Search to ncbiHGDS database
Query= 20030531C-000451 (20030531C-000451) 20030531C-000451
(1193 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22064953|ref|NT_035088.1|Hs11_35250 Homo sapiens chromosome ... 115 6e-23
Alignment gi|22057892|ref|NT_011786.10|HsX_11943 Homo sapiens chromosome ... 42 0.69
Alignment gi|22057384|ref|NT_034880.1|Hs6_35042 Homo sapiens chromosome 6... 42 0.69
Alignment gi|22055318|ref|NT_010280.12|Hs15_10437 Homo sapiens chromosome... 42 0.69
Alignment gi|22053857|ref|NT_009799.10|Hs13_9956 Homo sapiens chromosome ... 42 0.69
Alignment gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome ... 40 2.7
Alignment gi|22046004|ref|NT_028233.7|Hs7_28392 Homo sapiens chromosome 7... 40 2.7
Alignment gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6... 40 2.7
Alignment gi|22041390|ref|NT_022778.10|Hs4_22934 Homo sapiens chromosome ... 40 2.7
Alignment gi|22043776|ref|NT_005543.11|Hs3_5700 Homo sapiens chromosome 3... 40 2.7
Alignment gi|22042828|ref|NT_034534.1|Hs3_34696 Homo sapiens chromosome 3... 40 2.7
Alignment gi|22052521|ref|NT_011233.10|Hs19_11390 Homo sapiens chromosome... 40 2.7
Alignment gi|22060446|ref|NT_028380.7|Hs18_28539 Homo sapiens chromosome ... 40 2.7
Alignment gi|22057507|ref|NT_030828.6|Hs15_31084 Homo sapiens chromosome ... 40 2.7
Alignment gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome ... 40 2.7
Alignment gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome ... 40 2.7
Alignment gi|22065966|ref|NT_009151.12|Hs11_9308 Homo sapiens chromosome ... 40 2.7
>gi|22064953|ref|NT_035088.1|Hs11_35250 Homo sapiens chromosome 11 reference
genomic contig
Length = 8283011
Score = 115 bits (58), Expect = 6e-23
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 409 tgtgccagaactgcgtggagctggactcagctaccctggcaggcatcattgtcaccgaca 468
||||||||| ||| ||||||||||| |||| ||| |||| |||||||||||||| ||
Sbjct: 7752753 tgtgccagagctgtgtggagctggatccagccaccgtggctggcatcattgtcactgatg 7752694
Query: 469 tcatcgccactctgctcctcgctttgggagtctactgctttgctggacacgaga 522
|||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||
Sbjct: 7752693 tcattgccactctgctccttgctttgggagtcttctgctttgctggacatgaga 7752640
Score = 103 bits (52), Expect = 2e-19
Identities = 115/136 (84%)
Strand = Plus / Minus
Query: 38 tttcgggtgcctgtgagtcggttgtgggagggcggctttcacccaggctgcaagttctgt 97
|||| ||| |||||||||| | | |||||||| ||| |||||||||||| ||||| ||
Sbjct: 7755551 tttccggtacctgtgagtcagctaggggagggcagctctcacccaggctgatagttcggt 7755492
Query: 98 gacctgggtctgtctactggatgaactctgctggaagatggaacatagcaggtttctgtc 157
||||||| | | |||||||||||| || ||||| ||||||||||||||| |||||| ||
Sbjct: 7755491 gacctggctttatctactggatgagttccgctgggagatggaacatagcacgtttctctc 7755432
Query: 158 tggcctgatactggct 173
||||||| ||||||||
Sbjct: 7755431 tggcctggtactggct 7755416
Score = 83.8 bits (42), Expect = 2e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 583 agccccttcgagatcggaatgatggtcagtacagtcgtcttggtgagaactgggctcgga 642
||||||| |||||||| |||||| ||||||||| | ||||| | |||||||||||||
Sbjct: 7752076 agcccctccgagatcgagatgatgctcagtacagccaccttggaggaaactgggctcgga 7752017
Query: 643 acaagtaaacctgtgactggtggcttctag 672
|||||| |||||| ||||||||||||||||
Sbjct: 7752016 acaagtgaacctgagactggtggcttctag 7751987
Score = 77.8 bits (39), Expect = 1e-11
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 213 gaggaacttgaggacaaagtgtttgtgagttgcaataccagcatcatatgg 263
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 7753417 gaggaacttgaggacagagtgtttgtgaattgcaataccagcatcacatgg 7753367
Score = 58.0 bits (29), Expect = 1e-05
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 306 gacctgggaaaacgcatcctggatccaagaggattatataagtgcaatg 354
||||||||||||||||||||||| ||| ||||| |||||| ||| ||||
Sbjct: 7753321 gacctgggaaaacgcatcctggacccacgaggaatatataggtgtaatg 7753273
Score = 50.1 bits (25), Expect = 0.003
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 540 gctgctgacactcaagatttgttgaggaatgaccagctctatcag 584
||||| ||||| |||| | ||||||||||||||||| ||||||||
Sbjct: 7752342 gctgccgacacacaagctctgttgaggaatgaccaggtctatcag 7752298
Score = 44.1 bits (22), Expect = 0.18
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1051 cacagaagtttccatgacatcatgagcggaggtggcagagacatcaaggg 1100
||||||||||||||||| |||||| || |||||||||||| ||||||
Sbjct: 7751604 cacagaagtttccatgatgtcatgaatgggagtggcagagacaacaaggg 7751555
>gi|22057892|ref|NT_011786.10|HsX_11943 Homo sapiens chromosome X reference
genomic contig
Length = 7887963
Score = 42.1 bits (21), Expect = 0.69
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 944 gctccccacccccactggctc 964
|||||||||||||||||||||
Sbjct: 2215708 gctccccacccccactggctc 2215688
>gi|22057384|ref|NT_034880.1|Hs6_35042 Homo sapiens chromosome 6 reference
genomic contig
Length = 9104287
Score = 42.1 bits (21), Expect = 0.69
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1004 caccacagctgaaggcgggcgggctgctg 1032
||||||||||| ||||| |||||||||||
Sbjct: 9080630 caccacagctgcaggcgagcgggctgctg 9080602
>gi|22055318|ref|NT_010280.12|Hs15_10437 Homo sapiens chromosome 15
reference genomic contig
Length = 667659
Score = 42.1 bits (21), Expect = 0.69
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 931 gtgcaggattgctgctcccca 951
|||||||||||||||||||||
Sbjct: 220670 gtgcaggattgctgctcccca 220650
>gi|22053857|ref|NT_009799.10|Hs13_9956 Homo sapiens chromosome 13 reference
genomic contig
Length = 12392129
Score = 42.1 bits (21), Expect = 0.69
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 807 ctccctgcccacctgtgtccttctt 831
||||||||||||||||| |||||||
Sbjct: 8378599 ctccctgcccacctgtggccttctt 8378623
>gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome 9 reference
genomic contig
Length = 16078776
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 945 ctccccacccccactggctc 964
||||||||||||||||||||
Sbjct: 6025412 ctccccacccccactggctc 6025393
>gi|22046004|ref|NT_028233.7|Hs7_28392 Homo sapiens chromosome 7 reference
genomic contig
Length = 1274604
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 804 gccctccctgcccacctgtg 823
||||||||||||||||||||
Sbjct: 462081 gccctccctgcccacctgtg 462100
>gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6 reference
genomic contig
Length = 48753116
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 712 tgagaaagatgtcctccttc 731
||||||||||||||||||||
Sbjct: 37840837 tgagaaagatgtcctccttc 37840856
>gi|22041390|ref|NT_022778.10|Hs4_22934 Homo sapiens chromosome 4 reference
genomic contig
Length = 5583623
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 381 aaaatatttctgcaagtata 400
||||||||||||||||||||
Sbjct: 5411047 aaaatatttctgcaagtata 5411066
>gi|22043776|ref|NT_005543.11|Hs3_5700 Homo sapiens chromosome 3 reference
genomic contig
Length = 2597048
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 945 ctccccacccccactggctc 964
||||||||||||||||||||
Sbjct: 1471369 ctccccacccccactggctc 1471350
>gi|22042828|ref|NT_034534.1|Hs3_34696 Homo sapiens chromosome 3 reference
genomic contig
Length = 2258530
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 caggtttctgtctggcctga 165
||||||||||||||||||||
Sbjct: 1298153 caggtttctgtctggcctga 1298172
>gi|22052521|ref|NT_011233.10|Hs19_11390 Homo sapiens chromosome 19
reference genomic contig
Length = 1862376
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 936 ggattgctgctccccacccc 955
||||||||||||||||||||
Sbjct: 707636 ggattgctgctccccacccc 707655
>gi|22060446|ref|NT_028380.7|Hs18_28539 Homo sapiens chromosome 18 reference
genomic contig
Length = 3043488
Score = 40.1 bits (20), Expect = 2.7
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 811 ctgcccacctgtgtccttctttcttcgcttcccttt 846
|||||||||||||||| ||| ||| | |||||||||
Sbjct: 2146867 ctgcccacctgtgtccctctctctgcacttcccttt 2146832
>gi|22057507|ref|NT_030828.6|Hs15_31084 Homo sapiens chromosome 15 reference
genomic contig
Length = 6318192
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 agcccctatgaggtagaaat 211
||||||||||||||||||||
Sbjct: 2226895 agcccctatgaggtagaaat 2226914
>gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome 14 reference
genomic contig
Length = 39365623
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 992 ctttgacttccgcaccacag 1011
||||||||||||||||||||
Sbjct: 12865441 ctttgacttccgcaccacag 12865460
>gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome 14 reference
genomic contig
Length = 46538979
Score = 40.1 bits (20), Expect = 2.7
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 381 aaaatatttctgcaagtatattat 404
||||||||||||||| ||||||||
Sbjct: 41041544 aaaatatttctgcaattatattat 41041521
>gi|22065966|ref|NT_009151.12|Hs11_9308 Homo sapiens chromosome 11 reference
genomic contig
Length = 12972822
Score = 40.1 bits (20), Expect = 2.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 tatggctttatttttcgggt 45
||||||||||||||||||||
Sbjct: 12790716 tatggctttatttttcgggt 12790735
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1193
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1172
effective length of database: 2,826,363,332
effective search space: 3312497825104
effective search space used: 3312497825104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)