Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-000451


Query

>20030531C-000451 (20030531C-000451) 20030531C-000451
ACGGTCGAAT TCTCCACACG TTGGCTATGG CTTTATTTTT CGGGTGCCTG
TGAGTCGGTT GTGGGAGGGC GGCTTTCACC CAGGCTGCAA GTTCTGTGAC
CTGGGTCTGT CTACTGGATG AACTCTGCTG GAAGATGGAA CATAGCAGGT
TTCTGTCTGG CCTGATACTG GCTGCGTTTC TCTCCCGAGT GAGCCCCTAT
GAGGTAGAAA TGGAGGAACT TGAGGACAAA GTGTTTGTGA GTTGCAATAC
CAGCATCATA TGGCTACAAG GAACAGAAGG AGAACTACTT TCAGATAAAA
AAATAGACCT GGGAAAACGC ATCCTGGATC CAAGAGGATT ATATAAGTGC
AATGCGCCAA AAGAACAAGA CAGCAACAGC AAAATATTTC TGCAAGTATA
TTATCGAATG TGCCAGAACT GCGTGGAGCT GGACTCAGCT ACCCTGGCAG
GCATCATTGT CACCGACATC ATCGCCACTC TGCTCCTCGC TTTGGGAGTC
TACTGCTTTG CTGGACACGA GATGGGAAGG TTCTCTAGGG CTGCTGACAC
TCAAGATTTG TTGAGGAATG ACCAGCTCTA TCAGCCCCTT CGAGATCGGA
ATGATGGTCA GTACAGTCGT CTTGGTGAGA ACTGGGCTCG GAACAAGTAA
ACCTGTGACT GGTGGCTTCT AGGTGCATCT GTTACCGACT CAACTTCTCT
CCTTGCTCAG CTGAGAAAGA TGTCCTCCTT CAGTTGGCAG GTGCCTGGAT
TTTGAAGGAT CCTGGGTGAG GCATGGGAGT GGTCCTGACT TGGCTGAGCC
TTTGCCCTCC CTGCCCACCT GTGTCCTTCT TTCTTCGCTT CCCTTTCTCT
GCCCCACATG GACGGTATGA TGGGCAGTGT CTCACCATAT CCTGTCCCAC
TGGTGTTTTT TGGCCTGGCG GACTCTCTGG GTGCAGGATT GCTGCTCCCC
ACCCCCACTG GCTCTAGTCC CCGATACCAA CACTGCTGCT GCTTTGACTT
CCGCACCACA GCTGAAGGCG GGCGGGCTGC TGTGTTTAGA GACCTGGCCA
CACAGAAGTT TCCATGACAT CATGAGCGGA GGTGGCAGAG ACATCAAGGG
CCCCCAGAAT CACTTCTTAT CAAGGCTCTG AGAGAGTGTA TGAACAAGTC
TCACTTCTGC TAAGGGGCTG GGCCTTGGCT TTATGACTCT GTT

Search to ncbiHGDS database

Query= 20030531C-000451 (20030531C-000451) 20030531C-000451
         (1193 letters)

Database: Homo Sapiens Gene(masked sequence)
           1395 sequences; 2,826,392,627 total letters

Searching...................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|22064953|ref|NT_035088.1|Hs11_35250 Homo sapiens chromosome ...   115  6e-23
Alignment   gi|22057892|ref|NT_011786.10|HsX_11943 Homo sapiens chromosome ...    42  0.69
Alignment   gi|22057384|ref|NT_034880.1|Hs6_35042 Homo sapiens chromosome 6...    42  0.69
Alignment   gi|22055318|ref|NT_010280.12|Hs15_10437 Homo sapiens chromosome...    42  0.69
Alignment   gi|22053857|ref|NT_009799.10|Hs13_9956 Homo sapiens chromosome ...    42  0.69
Alignment   gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome ...    40  2.7
Alignment   gi|22046004|ref|NT_028233.7|Hs7_28392 Homo sapiens chromosome 7...    40  2.7
Alignment   gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6...    40  2.7
Alignment   gi|22041390|ref|NT_022778.10|Hs4_22934 Homo sapiens chromosome ...    40  2.7
Alignment   gi|22043776|ref|NT_005543.11|Hs3_5700 Homo sapiens chromosome 3...    40  2.7
Alignment   gi|22042828|ref|NT_034534.1|Hs3_34696 Homo sapiens chromosome 3...    40  2.7
Alignment   gi|22052521|ref|NT_011233.10|Hs19_11390 Homo sapiens chromosome...    40  2.7
Alignment   gi|22060446|ref|NT_028380.7|Hs18_28539 Homo sapiens chromosome ...    40  2.7
Alignment   gi|22057507|ref|NT_030828.6|Hs15_31084 Homo sapiens chromosome ...    40  2.7
Alignment   gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome ...    40  2.7
Alignment   gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome ...    40  2.7
Alignment   gi|22065966|ref|NT_009151.12|Hs11_9308 Homo sapiens chromosome ...    40  2.7


>gi|22064953|ref|NT_035088.1|Hs11_35250 Homo sapiens chromosome 11 reference
               genomic contig
          Length = 8283011

 Score =  115 bits (58), Expect = 6e-23
 Identities = 100/114 (87%)
 Strand = Plus / Minus


Query: 409     tgtgccagaactgcgtggagctggactcagctaccctggcaggcatcattgtcaccgaca 468
               ||||||||| ||| |||||||||||  |||| ||| |||| |||||||||||||| ||
Sbjct: 7752753 tgtgccagagctgtgtggagctggatccagccaccgtggctggcatcattgtcactgatg 7752694


Query: 469     tcatcgccactctgctcctcgctttgggagtctactgctttgctggacacgaga 522
               |||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||
Sbjct: 7752693 tcattgccactctgctccttgctttgggagtcttctgctttgctggacatgaga 7752640


 Score =  103 bits (52), Expect = 2e-19
 Identities = 115/136 (84%)
 Strand = Plus / Minus


Query: 38      tttcgggtgcctgtgagtcggttgtgggagggcggctttcacccaggctgcaagttctgt 97
               |||| ||| |||||||||| | |  |||||||| ||| ||||||||||||  ||||| ||
Sbjct: 7755551 tttccggtacctgtgagtcagctaggggagggcagctctcacccaggctgatagttcggt 7755492


Query: 98      gacctgggtctgtctactggatgaactctgctggaagatggaacatagcaggtttctgtc 157
               ||||||| | | ||||||||||||  || ||||| ||||||||||||||| |||||| ||
Sbjct: 7755491 gacctggctttatctactggatgagttccgctgggagatggaacatagcacgtttctctc 7755432


Query: 158     tggcctgatactggct 173
               ||||||| ||||||||
Sbjct: 7755431 tggcctggtactggct 7755416


 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus


Query: 583     agccccttcgagatcggaatgatggtcagtacagtcgtcttggtgagaactgggctcgga 642
               ||||||| ||||||||  |||||| ||||||||| |  ||||| |  |||||||||||||
Sbjct: 7752076 agcccctccgagatcgagatgatgctcagtacagccaccttggaggaaactgggctcgga 7752017


Query: 643     acaagtaaacctgtgactggtggcttctag 672
               |||||| |||||| ||||||||||||||||
Sbjct: 7752016 acaagtgaacctgagactggtggcttctag 7751987


 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus


Query: 213     gaggaacttgaggacaaagtgtttgtgagttgcaataccagcatcatatgg 263
               |||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 7753417 gaggaacttgaggacagagtgtttgtgaattgcaataccagcatcacatgg 7753367


 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus


Query: 306     gacctgggaaaacgcatcctggatccaagaggattatataagtgcaatg 354
               ||||||||||||||||||||||| ||| ||||| |||||| ||| ||||
Sbjct: 7753321 gacctgggaaaacgcatcctggacccacgaggaatatataggtgtaatg 7753273


 Score = 50.1 bits (25), Expect = 0.003
 Identities = 40/45 (88%)
 Strand = Plus / Minus


Query: 540     gctgctgacactcaagatttgttgaggaatgaccagctctatcag 584
               ||||| ||||| |||| | ||||||||||||||||| ||||||||
Sbjct: 7752342 gctgccgacacacaagctctgttgaggaatgaccaggtctatcag 7752298


 Score = 44.1 bits (22), Expect = 0.18
 Identities = 43/50 (86%)
 Strand = Plus / Minus


Query: 1051    cacagaagtttccatgacatcatgagcggaggtggcagagacatcaaggg 1100
               |||||||||||||||||  ||||||  ||  |||||||||||| ||||||
Sbjct: 7751604 cacagaagtttccatgatgtcatgaatgggagtggcagagacaacaaggg 7751555



>gi|22057892|ref|NT_011786.10|HsX_11943 Homo sapiens chromosome X reference
               genomic contig
          Length = 7887963

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus


Query: 944     gctccccacccccactggctc 964
               |||||||||||||||||||||
Sbjct: 2215708 gctccccacccccactggctc 2215688



>gi|22057384|ref|NT_034880.1|Hs6_35042 Homo sapiens chromosome 6 reference
               genomic contig
          Length = 9104287

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 27/29 (93%)
 Strand = Plus / Minus


Query: 1004    caccacagctgaaggcgggcgggctgctg 1032
               ||||||||||| ||||| |||||||||||
Sbjct: 9080630 caccacagctgcaggcgagcgggctgctg 9080602



>gi|22055318|ref|NT_010280.12|Hs15_10437 Homo sapiens chromosome 15
              reference genomic contig
          Length = 667659

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Minus


Query: 931    gtgcaggattgctgctcccca 951
              |||||||||||||||||||||
Sbjct: 220670 gtgcaggattgctgctcccca 220650



>gi|22053857|ref|NT_009799.10|Hs13_9956 Homo sapiens chromosome 13 reference
               genomic contig
          Length = 12392129

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 24/25 (96%)
 Strand = Plus / Plus


Query: 807     ctccctgcccacctgtgtccttctt 831
               ||||||||||||||||| |||||||
Sbjct: 8378599 ctccctgcccacctgtggccttctt 8378623



>gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome 9 reference
               genomic contig
          Length = 16078776

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 945     ctccccacccccactggctc 964
               ||||||||||||||||||||
Sbjct: 6025412 ctccccacccccactggctc 6025393



>gi|22046004|ref|NT_028233.7|Hs7_28392 Homo sapiens chromosome 7 reference
              genomic contig
          Length = 1274604

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 804    gccctccctgcccacctgtg 823
              ||||||||||||||||||||
Sbjct: 462081 gccctccctgcccacctgtg 462100



>gi|22061075|ref|NT_007592.10|Hs6_7749 Homo sapiens chromosome 6 reference
                genomic contig
          Length = 48753116

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 712      tgagaaagatgtcctccttc 731
                ||||||||||||||||||||
Sbjct: 37840837 tgagaaagatgtcctccttc 37840856



>gi|22041390|ref|NT_022778.10|Hs4_22934 Homo sapiens chromosome 4 reference
               genomic contig
          Length = 5583623

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 381     aaaatatttctgcaagtata 400
               ||||||||||||||||||||
Sbjct: 5411047 aaaatatttctgcaagtata 5411066



>gi|22043776|ref|NT_005543.11|Hs3_5700 Homo sapiens chromosome 3 reference
               genomic contig
          Length = 2597048

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 945     ctccccacccccactggctc 964
               ||||||||||||||||||||
Sbjct: 1471369 ctccccacccccactggctc 1471350



>gi|22042828|ref|NT_034534.1|Hs3_34696 Homo sapiens chromosome 3 reference
               genomic contig
          Length = 2258530

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 146     caggtttctgtctggcctga 165
               ||||||||||||||||||||
Sbjct: 1298153 caggtttctgtctggcctga 1298172



>gi|22052521|ref|NT_011233.10|Hs19_11390 Homo sapiens chromosome 19
              reference genomic contig
          Length = 1862376

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 936    ggattgctgctccccacccc 955
              ||||||||||||||||||||
Sbjct: 707636 ggattgctgctccccacccc 707655



>gi|22060446|ref|NT_028380.7|Hs18_28539 Homo sapiens chromosome 18 reference
               genomic contig
          Length = 3043488

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus


Query: 811     ctgcccacctgtgtccttctttcttcgcttcccttt 846
               |||||||||||||||| ||| ||| | |||||||||
Sbjct: 2146867 ctgcccacctgtgtccctctctctgcacttcccttt 2146832



>gi|22057507|ref|NT_030828.6|Hs15_31084 Homo sapiens chromosome 15 reference
               genomic contig
          Length = 6318192

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 192     agcccctatgaggtagaaat 211
               ||||||||||||||||||||
Sbjct: 2226895 agcccctatgaggtagaaat 2226914



>gi|22050229|ref|NT_026437.8|Hs14_26604 Homo sapiens chromosome 14 reference
                genomic contig
          Length = 39365623

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 992      ctttgacttccgcaccacag 1011
                ||||||||||||||||||||
Sbjct: 12865441 ctttgacttccgcaccacag 12865460



>gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome 14 reference
                genomic contig
          Length = 46538979

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus


Query: 381      aaaatatttctgcaagtatattat 404
                ||||||||||||||| ||||||||
Sbjct: 41041544 aaaatatttctgcaattatattat 41041521



>gi|22065966|ref|NT_009151.12|Hs11_9308 Homo sapiens chromosome 11 reference
                genomic contig
          Length = 12972822

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 26       tatggctttatttttcgggt 45
                ||||||||||||||||||||
Sbjct: 12790716 tatggctttatttttcgggt 12790735


  Database: Homo Sapiens Gene(masked sequence)
    Posted date:  Nov 13, 2002  9:59 PM
  Number of letters in database: 2,826,392,627
  Number of sequences in database:  1395

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1193
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1172
effective length of database: 2,826,363,332
effective search space: 3312497825104
effective search space used: 3312497825104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)