Search to ncbiHGDS database
Query= 20030531C-003018 (20030531C-003018) 20030531C-003018
(1058 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22058381|ref|NT_019696.9|HsX_19852 Homo sapiens chromosome X... 1388 0.0
Alignment gi|22053857|ref|NT_009799.10|Hs13_9956 Homo sapiens chromosome ... 90 3e-15
Alignment gi|22045328|ref|NT_004511.12|Hs1_4668 Homo sapiens chromosome 1... 60 3e-06
Alignment gi|22065129|ref|NT_024901.10|Hs17_25057 Homo sapiens chromosome... 50 0.003
Alignment gi|22043791|ref|NT_034400.1|Hs1_34562 Homo sapiens chromosome 1... 48 0.010
Alignment gi|17484369|ref|NT_011362.7|Hs20_11519 Homo sapiens chromosome ... 44 0.15
Alignment gi|22063928|ref|NT_033903.2|Hs11_34058 Homo sapiens chromosome ... 44 0.15
Alignment gi|22056350|ref|NT_033944.2|Hs6_34099 Homo sapiens chromosome 6... 42 0.61
Alignment gi|16168698|ref|NT_011520.8|Hs22_11677 Homo sapiens chromosome ... 42 0.61
Alignment gi|22058050|ref|NT_035325.1|Hs15_35487 Homo sapiens chromosome ... 42 0.61
Alignment gi|22065966|ref|NT_009151.12|Hs11_9308 Homo sapiens chromosome ... 42 0.61
Alignment gi|22061139|ref|NT_007627.9|Hs6_7784 Homo sapiens chromosome 6 ... 40 2.4
Alignment gi|22054609|ref|NT_025741.9|Hs6_25897 Homo sapiens chromosome 6... 40 2.4
Alignment gi|22052573|ref|NT_006802.10|Hs5_6959 Homo sapiens chromosome 5... 40 2.4
Alignment gi|22067415|ref|NT_011515.8|Hs21_11672 Homo sapiens chromosome ... 40 2.4
Alignment gi|22041195|ref|NT_022135.10|Hs2_22291 Homo sapiens chromosome ... 40 2.4
Alignment gi|22060079|ref|NT_024997.8|Hs18_25153 Homo sapiens chromosome ... 40 2.4
Alignment gi|22069010|ref|NT_010604.10|Hs16_10761 Homo sapiens chromosome... 40 2.4
Alignment gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome ... 40 2.4
Alignment gi|22060932|ref|NT_009681.12|Hs12_9838 Homo sapiens chromosome ... 40 2.4
>gi|22058381|ref|NT_019696.9|HsX_19852 Homo sapiens chromosome X reference
genomic contig
Length = 3162719
Score = 1388 bits (700), Expect = 0.0
Identities = 933/1006 (92%), Gaps = 11/1006 (1%)
Strand = Plus / Plus
Query: 44 caggtgtgaatgaggcaggatgaactggacaggtctgtacaccttgctcagtggcgtgaa 103
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2656840 caggtgtgaatgaggcaggatgaactggacaggtttgtacaccttgctcagtggcgtgaa 2656899
Query: 104 ccggcattctactgccattggccgagtatggctctcagtcatcttcatcttcagaatcat 163
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2656900 ccggcattctactgccattggccgagtatggctctcggtcatcttcatcttcagaatcat 2656959
Query: 164 ggtgctggtggtggctgcagagagtgtgtggggtgatgagaaatcttccttcatctgcaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2656960 ggtgctggtggtggctgcagagagtgtgtggggtgatgagaaatcttccttcatctgcaa 2657019
Query: 224 caccctccagcctggctgcaacagcgtctgctacgaccactttttccccatctcccatgt 283
||| ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 2657020 cacactccagcctggctgcaacagcgtttgctatgaccaattcttccccatctcccatgt 2657079
Query: 284 gcgtctgtggtctctgcagctcatcttggtttccaccccagctcttctcgtggccatgca 343
||| |||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 2657080 gcggctgtggtccctgcagctcatcctagtttccaccccagctctcctcgtggccatgca 2657139
Query: 344 cgtggctcaccagcagcacatagaaaagaaaatgctgcgacttgagggccatgccgaccc 403
||||||||||||||| |||||||| ||||||||||| || ||||||||||||| |||||
Sbjct: 2657140 cgtggctcaccagcaacacatagagaagaaaatgctacggcttgagggccatggggaccc 2657199
Query: 404 cctccacctggaggaggtgaagaggcacaaggtccacatctcagggacgctgtggtggac 463
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2657200 cctacacctggaggaggtgaagaggcacaaggtccacatctcagggacactgtggtggac 2657259
Query: 464 ctacgtcatcagcgtggtcttccggctgctgttcgaggccgccttcatgtacgtctttta 523
||| |||||||||||||| ||||||||| |||| ||||||| ||||||||| ||||||||
Sbjct: 2657260 ctatgtcatcagcgtggtgttccggctgttgtttgaggccgtcttcatgtatgtctttta 2657319
Query: 524 tctgctctaccctggctatgccatggtgcggttggtgaagtgtgaggcctacccctgccc 583
||||||||||||||||||||||||||||||| |||| ||||| || | ||||||||||||
Sbjct: 2657320 tctgctctaccctggctatgccatggtgcggctggtcaagtgcgacgtctacccctgccc 2657379
Query: 584 caacacagtggactgctttgtgtcccgccccaccgagaagaccgtcttcaccgtcttcat 643
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2657380 caacacagtggactgcttcgtgtcccgccccaccgagaaaaccgtcttcaccgtcttcat 2657439
Query: 644 gctggccgcctccggcatctgcatcatcctcaatgtggccgaggtggtgtacctcatctt 703
||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2657440 gctagctgcctctggcatctgcatcatcctcaatgtggccgaggtggtgtacctcatcat 2657499
Query: 704 ccgggcctgcgcccgccgagcccagcgccgctccaatccgccctcccgcaagggctcggg 763
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 2657500 ccgggcctgtgcccgccgagcccagcgccgctccaatccaccttcccgcaagggctc--- 2657556
Query: 764 gggcttcggccaccgcctctcacctgaatacaagcagaacgagatcaacaagctgctgag 823
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2657557 gggcttcggccaccgcctctcacctgaatacaagcagaatgagatcaacaagctgctgag 2657616
Query: 824 cgagcaggacggctccctgaaagacatactgcgccgcagccccggtaccggggctgggct 883
|||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 2657617 tgagcaggatggctccctgaaagacatactgcgccgcagccctggcaccggggctgggct 2657676
Query: 884 ggcggaaaagagcgaccgctgctcagcctgctgatgccacagaccaggcaacctcccatc 943
||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 2657677 ggctgaaaagagcgaccgctgctcggcctgctgatgccacataccaggcaacctcccatc 2657736
Query: 944 ctgcccctccaccctggccccggggctgcccctccttctcccctgccggctggctgagca 1003
| |||| | ||||| |||| ||| |||||||||||||||||||||| || ||
Sbjct: 2657737 ccacccc-cgaccct-gccctgggcgagcccctccttctcccctgccgg-----tgcaca 2657789
Query: 1004 ggcctctgcctgcgagggatttgctccatcaaaaccctccttccct 1049
||||||||||||| |||| || ||| ||||||||| |||||||||
Sbjct: 2657790 ggcctctgcctgctgggga-ttactcgatcaaaaccttccttccct 2657834
Score = 77.8 bits (39), Expect = 1e-11
Identities = 49/51 (96%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 1 agacacgcctgcagacattccctgggaaagggcaagcagcagccaggtgtg 51
|||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 2648378 agacacgcctgcagacattctctgggaaagggc-agcagcagccaggtgtg 2648427
>gi|22053857|ref|NT_009799.10|Hs13_9956 Homo sapiens chromosome 13 reference
genomic contig
Length = 12392129
Score = 89.7 bits (45), Expect = 3e-15
Identities = 111/133 (83%)
Strand = Plus / Minus
Query: 217 tctgcaacaccctccagcctggctgcaacagcgtctgctacgaccactttttccccatct 276
||||||||||||| ||||| |||||||| | ||| |||||||| |||| ||||||||||
Sbjct: 1743565 tctgcaacaccctgcagccaggctgcaagaacgtgtgctacgatcactacttccccatct 1743506
Query: 277 cccatgtgcgtctgtggtctctgcagctcatcttggtttccaccccagctcttctcgtgg 336
|||| | || || ||| | |||||||| ||||| || ||||| ||||| || || ||||
Sbjct: 1743505 cccacatccggctatgggccctgcagctgatcttcgtgtccacgccagcgctcctagtgg 1743446
Query: 337 ccatgcacgtggc 349
|||||||||||||
Sbjct: 1743445 ccatgcacgtggc 1743433
Score = 77.8 bits (39), Expect = 1e-11
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 582 cccaacacagtggactgctttgtgtcccgccccaccgagaagaccgtcttcaccgtcttc 641
|||||||| |||||||||||||||||||| ||||| |||||||| |||||||| || |||
Sbjct: 1743197 cccaacactgtggactgctttgtgtcccggcccacggagaagactgtcttcacagtgttc 1743138
Query: 642 atg 644
|||
Sbjct: 1743137 atg 1743135
Score = 67.9 bits (34), Expect = 1e-08
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 576 ccctgccccaacacagtggactgctttgtgtcccgccccaccgagaagaccgtcttcacc 635
|||||||||||||| ||||||||||| | ||| | ||||| ||||||||| |||||| |
Sbjct: 1696874 ccctgccccaacacggtggactgcttcatctccaggcccacggagaagaccatcttcatc 1696815
Query: 636 gtcttcatgctggc 649
|||||||||||||
Sbjct: 1696814 atcttcatgctggc 1696801
Score = 52.0 bits (26), Expect = 6e-04
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 252 tgctacgaccactttttccccatctcccatgtgcgtctgtggtctctgcagctcatcttg 311
||||| |||||||||||||| | ||||| | || |||||| | || ||||| |||||
Sbjct: 1777429 tgctatgaccactttttcccggtgtcccacatccggctgtgggccctccagctgatcttc 1777370
Query: 312 gtttccaccccagctcttctcgtggccatgcacgtggc 349
|| ||||||||||| || || ||||||||||| |||||
Sbjct: 1777369 gtctccaccccagcgctgctggtggccatgcatgtggc 1777332
Score = 42.1 bits (21), Expect = 0.61
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 212 cttcatctgcaacaccctccagcctggctgcaacagcgtctgctacgac 260
||||| ||||||||||| ||||| |||||| | | |||||||||||||
Sbjct: 1697274 cttcacctgcaacacccagcagccgggctgcgagaacgtctgctacgac 1697226
>gi|22045328|ref|NT_004511.12|Hs1_4668 Homo sapiens chromosome 1 reference
genomic contig
Length = 6811412
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 591 gtggactgctttgtgtcccgccccaccgagaagaccgtcttcaccgtcttcatg 644
|||||||||||||| || |||||||| ||||||||| |||||| | ||||||||
Sbjct: 2564377 gtggactgctttgtctctcgccccacggagaagaccatcttcatcatcttcatg 2564430
Score = 50.1 bits (25), Expect = 0.003
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 218 ctgcaacaccctccagcctggctgcaacagcgtctgctacgaccactttttccccatctc 277
|||||||||| ||||| ||||||| || ||||||||||||| ||| |||||||||||
Sbjct: 2554496 ctgcaacaccaagcagcccggctgcaccaacgtctgctacgacaactacttccccatctc 2554555
Query: 278 c 278
|
Sbjct: 2554556 c 2554556
Score = 42.1 bits (21), Expect = 0.61
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 171 gtggtggctgcagagagtgtgtggggtgatgag 203
||||||||||||||| | |||||||| ||||||
Sbjct: 2554449 gtggtggctgcagagcgcgtgtggggggatgag 2554481
>gi|22065129|ref|NT_024901.10|Hs17_25057 Homo sapiens chromosome 17
reference genomic contig
Length = 1405484
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 576 ccctgccccaacacagtggactgctttgtgtcccgccccaccgagaagaccgtcttc 632
|||||||| |||| || |||||||| ||| ||| |||||||||||||||||||||
Sbjct: 120359 ccctgcccgcacacggtcgactgcttcgtgagccggcccaccgagaagaccgtcttc 120303
>gi|22043791|ref|NT_034400.1|Hs1_34562 Homo sapiens chromosome 1 reference
genomic contig
Length = 946514
Score = 48.1 bits (24), Expect = 0.010
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 189 gtgtggggtgatgagaaatcttccttcatctgcaacaccctccagcctggctgcaacagc 248
|||||||| |||||| |||| |||| | |||||||||| |||||||||||| | | |
Sbjct: 920829 gtgtggggggatgagcaatccgacttcgtgtgcaacacccagcagcctggctgcgagaac 920888
Query: 249 gtctgctacgac 260
||||||||||||
Sbjct: 920889 gtctgctacgac 920900
Score = 46.1 bits (23), Expect = 0.039
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 591 gtggactgctttgtgtcccgccccaccgagaagaccgtcttca 633
||||||||||| |||||||| ||||| ||||| ||| ||||||
Sbjct: 921273 gtggactgcttcgtgtcccggcccacggagaaaaccatcttca 921315
Score = 44.1 bits (22), Expect = 0.15
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 231 cagcctggctgcaacagcgtctgctacgaccactttttccccatctccca 280
|||||||||||| | | |||||||||||||| |||||||||||||||
Sbjct: 771792 cagcctggctgccagaatgtctgctacgaccaggctttccccatctccca 771743
>gi|17484369|ref|NT_011362.7|Hs20_11519 Homo sapiens chromosome 20 reference
genomic contig
Length = 24982240
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 cctgggaaagggcaagcagcag 42
||||||||||||||||||||||
Sbjct: 5657633 cctgggaaagggcaagcagcag 5657612
>gi|22063928|ref|NT_033903.2|Hs11_34058 Homo sapiens chromosome 11 reference
genomic contig
Length = 6368572
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 164 ggtgctggtggtggctgcagag 185
||||||||||||||||||||||
Sbjct: 5745270 ggtgctggtggtggctgcagag 5745291
>gi|22056350|ref|NT_033944.2|Hs6_34099 Homo sapiens chromosome 6 reference
genomic contig
Length = 19894959
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 287 tctgtggtctctgcagctcat 307
|||||||||||||||||||||
Sbjct: 11629865 tctgtggtctctgcagctcat 11629845
Score = 40.1 bits (20), Expect = 2.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 609 cgccccaccgagaagaccgtcttcaccgtcttcatgctgg 648
|||||||| ||||| ||| |||||| | ||||||||||||
Sbjct: 18554505 cgccccacggagaaaaccatcttcatcatcttcatgctgg 18554544
>gi|16168698|ref|NT_011520.8|Hs22_11677 Homo sapiens chromosome 22 reference
genomic contig
Length = 23083944
Score = 42.1 bits (21), Expect = 0.61
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 163 tggtgctggtggtggctgcagagag 187
||||||||| |||||||||||||||
Sbjct: 10182319 tggtgctggaggtggctgcagagag 10182295
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 217 tctgcaacaccctccagcc 235
|||||||||||||||||||
Sbjct: 17909741 tctgcaacaccctccagcc 17909723
Score = 38.2 bits (19), Expect = 9.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 972 cccctccttctcccctgcc 990
|||||||||||||||||||
Sbjct: 6358700 cccctccttctcccctgcc 6358682
>gi|22058050|ref|NT_035325.1|Hs15_35487 Homo sapiens chromosome 15
reference genomic contig
Length = 2264849
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 atggtgctggtggtggctgca 182
|||||||||||||||||||||
Sbjct: 389544 atggtgctggtggtggctgca 389564
>gi|22065966|ref|NT_009151.12|Hs11_9308 Homo sapiens chromosome 11 reference
genomic contig
Length = 12972822
Score = 42.1 bits (21), Expect = 0.61
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 160 tcatggtgctggtggtggctgcaga 184
||||||||||||||||||| |||||
Sbjct: 3696194 tcatggtgctggtggtggcagcaga 3696218
>gi|22061139|ref|NT_007627.9|Hs6_7784 Homo sapiens chromosome 6
reference genomic contig
Length = 533682
Score = 40.1 bits (20), Expect = 2.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 932 caacctcccatcctgcccctccac 955
||||||||| ||||||||||||||
Sbjct: 24640 caacctcccctcctgcccctccac 24663
>gi|22054609|ref|NT_025741.9|Hs6_25897 Homo sapiens chromosome 6 reference
genomic contig
Length = 25642888
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1035 aaaccctccttcccttcttc 1054
||||||||||||||||||||
Sbjct: 19959064 aaaccctccttcccttcttc 19959083
>gi|22052573|ref|NT_006802.10|Hs5_6959 Homo sapiens chromosome 5 reference
genomic contig
Length = 679124
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 966 gggctgcccctccttctccc 985
||||||||||||||||||||
Sbjct: 390398 gggctgcccctccttctccc 390417
>gi|22067415|ref|NT_011515.8|Hs21_11672 Homo sapiens chromosome 21 reference
genomic contig
Length = 3429374
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 713 cgcccgccgagcccagcgcc 732
||||||||||||||||||||
Sbjct: 1605831 cgcccgccgagcccagcgcc 1605850
>gi|22041195|ref|NT_022135.10|Hs2_22291 Homo sapiens chromosome 2 reference
genomic contig
Length = 16160948
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 gcattctactgccattggcc 126
||||||||||||||||||||
Sbjct: 9119760 gcattctactgccattggcc 9119779
>gi|22060079|ref|NT_024997.8|Hs18_25153 Homo sapiens chromosome 18
reference genomic contig
Length = 453697
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 403 ccctccacctggaggaggtg 422
||||||||||||||||||||
Sbjct: 208576 ccctccacctggaggaggtg 208595
>gi|22069010|ref|NT_010604.10|Hs16_10761 Homo sapiens chromosome 16
reference genomic contig
Length = 5675707
Score = 40.1 bits (20), Expect = 2.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 307 tcttggtttccaccccagctcttc 330
||||| ||||||||||||||||||
Sbjct: 2119018 tcttgctttccaccccagctcttc 2118995
>gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome 14 reference
genomic contig
Length = 46538979
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 969 ctgcccctccttctcccctg 988
||||||||||||||||||||
Sbjct: 11259982 ctgcccctccttctcccctg 11259963
>gi|22060932|ref|NT_009681.12|Hs12_9838 Homo sapiens chromosome 12 reference
genomic contig
Length = 2739920
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 413 ggaggaggtgaagaggcaca 432
||||||||||||||||||||
Sbjct: 1558472 ggaggaggtgaagaggcaca 1558453
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1058
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1037
effective length of database: 2,826,363,332
effective search space: 2930938775284
effective search space used: 2930938775284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)