Search to ncbiHGDS database
Query= 20030531C-003703 (20030531C-003703) 20030531C-003703
(1080 letters)
Database: Homo Sapiens Gene(masked sequence)
1395 sequences; 2,826,392,627 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22043173|ref|NT_034488.1|Hs2_34650 Homo sapiens chromosome 2... 1265 0.0
Alignment gi|22045639|ref|NT_005403.10|Hs2_5560 Homo sapiens chromosome 2... 52 6e-04
Alignment gi|22041414|ref|NT_021977.12|Hs1_22133 Homo sapiens chromosome ... 46 0.040
Alignment gi|22051774|ref|NT_030059.7|Hs10_30314 Homo sapiens chromosome ... 44 0.16
Alignment gi|22053291|ref|NT_033922.2|Hs13_34077 Homo sapiens chromosome ... 42 0.63
Alignment gi|22058798|ref|NT_035236.1|Hs12_35398 Homo sapiens chromosome ... 42 0.63
Alignment gi|22063498|ref|NT_033901.2|Hs11_34056 Homo sapiens chromosome ... 42 0.63
Alignment gi|22044260|ref|NT_004321.12|Hs1_4478 Homo sapiens chromosome 1... 42 0.63
Alignment gi|22053317|ref|NT_019424.10|Hs6_19580 Homo sapiens chromosome ... 40 2.5
Alignment gi|22044733|ref|NT_006383.12|Hs4_6540 Homo sapiens chromosome 4... 40 2.5
Alignment gi|22067223|ref|NT_011512.6|Hs21_11669 Homo sapiens chromosome ... 40 2.5
Alignment gi|20559789|ref|NT_011387.7|Hs20_11544 Homo sapiens chromosome ... 40 2.5
Alignment gi|22044123|ref|NT_005204.10|Hs2_5361 Homo sapiens chromosome 2... 40 2.5
Alignment gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome ... 40 2.5
Alignment gi|22059914|ref|NT_030874.4|HsX_31130 Homo sapiens chromosome X... 38 9.8
Alignment gi|22059709|ref|NT_028406.7|HsX_28565 Homo sapiens chromosome X... 38 9.8
Alignment gi|22059011|ref|NT_025319.10|HsX_25475 Homo sapiens chromosome ... 38 9.8
Alignment gi|22056112|ref|NT_011651.10|HsX_11808 Homo sapiens chromosome ... 38 9.8
Alignment gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome ... 38 9.8
Alignment gi|22058645|ref|NT_007540.10|Hs6_7697 Homo sapiens chromosome 6... 38 9.8
>gi|22043173|ref|NT_034488.1|Hs2_34650 Homo sapiens chromosome 2 reference
genomic contig
Length = 2246521
Score = 1265 bits (638), Expect = 0.0
Identities = 866/942 (91%)
Strand = Plus / Minus
Query: 139 tgggctcaggtgactatgactccataaaggaaccctgtttccgggaggaaaatgcccatt 198
|||||||||| |||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct: 419899 tgggctcaggggactatgactccatgaaggaaccctgtttccgtgaagaaaatgctaatt 419840
Query: 199 tcaaccgaatctttctgcccactgtctactccatcatcttcttaactggcatagtgggta 258
|||| |||||| |||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct: 419839 tcaataaaatcttcctgcccaccatctactccatcatcttcttaactggcattgtgggca 419780
Query: 259 atggattggtcatcctggtcatgggttaccagaagaaactgagaagcatgacggacaagt 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419779 atggattggtcatcctggtcatgggttaccagaagaaactgagaagcatgacggacaagt 419720
Query: 319 acagactgcacctgtctgtggcagaccttctctttgtcctcacacttcccttctgggcag 378
|||| ||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||
Sbjct: 419719 acaggctgcacctgtcagtggccgacctcctctttgtcatcacgcttcccttctgggcag 419660
Query: 379 ttgatgccgtggcaaactggtactttgggaagtttctgtgcaaggcagtccatgtcatct 438
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 419659 ttgatgccgtggcaaactggtactttgggaacttcctatgcaaggcagtccatgtcatct 419600
Query: 439 atactgtcaatctctacagcagtgtgctcatcctggccttcatcagtctggaccggtacc 498
| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 419599 acacagtcaacctctacagcagtgtcctcatcctggccttcatcagtctggaccgctacc 419540
Query: 499 tggctatcgtccatgccaccaacagtcagaggccaaggaagctattggctgaaaaagtgg 558
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 419539 tggccatcgtccacgccaccaacagtcagaggccaaggaagctgttggctgaaaaggtgg 419480
Query: 559 tctatgtcggcgtctggatacctgccctcctgttgactattcctgatttcatctttgcga 618
||||||| ||||||||||| |||||||||||| |||||||||| || ||||||||||| |
Sbjct: 419479 tctatgttggcgtctggatccctgccctcctgctgactattcccgacttcatctttgcca 419420
Query: 619 atgtcagggagggggatgggaggtacatctgtgaccgcttctaccccaatgacctgtggt 678
| ||||| |||| |||| || || ||||||||||||||||||||||||||| |||||
Sbjct: 419419 acgtcagtgaggcagatgacagatatatctgtgaccgcttctaccccaatgacttgtggg 419360
Query: 679 tagtggtgttccagtttcagcacatcatggttggccttatcctgccgggtattgtcatcc 738
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 419359 tggttgtgttccagtttcagcacatcatggttggccttatcctgcctggtattgtcatcc 419300
Query: 739 tatcttgctattgcatcatcatctccaagctgtcccactccaagggctatcagaagcgca 798
| || ||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 419299 tgtcctgctattgcattatcatctccaagctgtcacactccaagggccaccagaagcgca 419240
Query: 799 aagctctcaaaaccaccgttatcctcatcctggctttcttcgcctgctggctgccatact 858
| || ||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct: 419239 aggccctcaagaccacagtcatcctcatcctggctttcttcgcctgttggctgccttact 419180
Query: 859 acatcgggatcagcatcgactccttcatcctcctggaaatcatccagcaagggtgtgagt 918
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 419179 acattgggatcagcatcgactccttcatcctcctggaaatcatcaagcaagggtgtgagt 419120
Query: 919 ttgagagcactgtgcacaagtggatttccatcactgaggcccttgcctttttccactgtt 978
|||||| ||||||||||||||||||||||||||| |||||||| || || ||||||||||
Sbjct: 419119 ttgagaacactgtgcacaagtggatttccatcaccgaggccctagctttcttccactgtt 419060
Query: 979 gcctgaatcctatcctctacgctttccttggagccaaatttaaaacctctgcccagcacg 1038
| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 419059 gtctgaaccccatcctctatgctttccttggagccaaatttaaaacctctgcccagcacg 419000
Query: 1039 cactcacctctgtgagcagagggtccagcctaaagatcctct 1080
||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 418999 cactcacctctgtgagcagagggtccagcctcaagatcctct 418958
Score = 83.8 bits (42), Expect = 2e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 5 tgttggctgcggcagcaggtagcaaagtgaccctgaggacttgagtgctccggtagcccc 64
||||||||||||||||||||||||||||||| | |||| | |||||||||| |||||| |
Sbjct: 422163 tgttggctgcggcagcaggtagcaaagtgacgccgagggcctgagtgctccagtagccac 422104
Query: 65 cgcggctggagagtgagcagttaccatgga 94
||| ||||||| ||| |||||||||||
Sbjct: 422103 cgcatctggagaaccagcggttaccatgga 422074
>gi|22045639|ref|NT_005403.10|Hs2_5560 Homo sapiens chromosome 2
reference genomic contig
Length = 14990191
Score = 52.0 bits (26), Expect = 6e-04
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 472 tggccttcatcagtctggaccggtacctggctatcgtccatgccac 517
|||||| ||||||| ||||||| |||||||| || |||||||||||
Sbjct: 7138 tggcctgcatcagtgtggaccgttacctggccattgtccatgccac 7093
>gi|22041414|ref|NT_021977.12|Hs1_22133 Homo sapiens chromosome 1
reference genomic contig
Length = 1375079
Score = 46.1 bits (23), Expect = 0.040
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 103 gtatattcacttcagataattacacagagga 133
||||| ||||| |||||||||||||||||||
Sbjct: 955594 gtataatcactccagataattacacagagga 955564
>gi|22051774|ref|NT_030059.7|Hs10_30314 Homo sapiens chromosome 10 reference
genomic contig
Length = 20700699
Score = 44.1 bits (22), Expect = 0.16
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 457 gcagtgtgctcatcctggcctt 478
||||||||||||||||||||||
Sbjct: 17766838 gcagtgtgctcatcctggcctt 17766859
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 960 cttgcctttttccactgttg 979
||||||||||||||||||||
Sbjct: 9642911 cttgcctttttccactgttg 9642930
>gi|22053291|ref|NT_033922.2|Hs13_34077 Homo sapiens chromosome 13 reference
genomic contig
Length = 10951376
Score = 42.1 bits (21), Expect = 0.63
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 232 tcatcttcttaactggcatag 252
|||||||||||||||||||||
Sbjct: 9823212 tcatcttcttaactggcatag 9823232
Score = 38.2 bits (19), Expect = 9.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 373 gggcagttgatgccgtggc 391
|||||||||||||||||||
Sbjct: 4006128 gggcagttgatgccgtggc 4006146
>gi|22058798|ref|NT_035236.1|Hs12_35398 Homo sapiens chromosome 12
reference genomic contig
Length = 814570
Score = 42.1 bits (21), Expect = 0.63
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 128 agaggatgacttgggctcagg 148
|||||||||||||||||||||
Sbjct: 199252 agaggatgacttgggctcagg 199232
>gi|22063498|ref|NT_033901.2|Hs11_34056 Homo sapiens chromosome 11
reference genomic contig
Length = 1601393
Score = 42.1 bits (21), Expect = 0.63
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 413 tctgtgcaaggcagtccatgtcatc 437
||||||||||||| |||||||||||
Sbjct: 568502 tctgtgcaaggcactccatgtcatc 568526
>gi|22044260|ref|NT_004321.12|Hs1_4478 Homo sapiens chromosome 1
reference genomic contig
Length = 1131467
Score = 42.1 bits (21), Expect = 0.63
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 324 ctgcacctgtctgtggcagac 344
|||||||||||||||||||||
Sbjct: 15473 ctgcacctgtctgtggcagac 15493
>gi|22053317|ref|NT_019424.10|Hs6_19580 Homo sapiens chromosome 6 reference
genomic contig
Length = 7107542
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 413 tctgtgcaaggcagtccatg 432
||||||||||||||||||||
Sbjct: 4781680 tctgtgcaaggcagtccatg 4781661
>gi|22044733|ref|NT_006383.12|Hs4_6540 Homo sapiens chromosome 4 reference
genomic contig
Length = 5239069
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 343 accttctctttgtcctcaca 362
||||||||||||||||||||
Sbjct: 2084342 accttctctttgtcctcaca 2084323
>gi|22067223|ref|NT_011512.6|Hs21_11669 Homo sapiens chromosome 21 reference
genomic contig
Length = 28515771
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 595 ctattcctgatttcatcttt 614
||||||||||||||||||||
Sbjct: 7557520 ctattcctgatttcatcttt 7557539
>gi|20559789|ref|NT_011387.7|Hs20_11544 Homo sapiens chromosome 20 reference
genomic contig
Length = 26257626
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1045 cctctgtgagcagagggtcc 1064
||||||||||||||||||||
Sbjct: 3611229 cctctgtgagcagagggtcc 3611210
Score = 38.2 bits (19), Expect = 9.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 126 acagaggatgacttgggct 144
|||||||||||||||||||
Sbjct: 8822748 acagaggatgacttgggct 8822766
>gi|22044123|ref|NT_005204.10|Hs2_5361 Homo sapiens chromosome 2 reference
genomic contig
Length = 7084632
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 129 gaggatgacttgggctcagg 148
||||||||||||||||||||
Sbjct: 592307 gaggatgacttgggctcagg 592288
>gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome 14 reference
genomic contig
Length = 46538979
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 129 gaggatgacttgggctcagg 148
||||||||||||||||||||
Sbjct: 12230219 gaggatgacttgggctcagg 12230200
Score = 40.1 bits (20), Expect = 2.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1043 cacctctgtgagcagagggt 1062
||||||||||||||||||||
Sbjct: 8676215 cacctctgtgagcagagggt 8676196
>gi|22059914|ref|NT_030874.4|HsX_31130 Homo sapiens chromosome X reference
genomic contig
Length = 725530
Score = 38.2 bits (19), Expect = 9.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 624 agggagggggatgggaggt 642
|||||||||||||||||||
Sbjct: 224280 agggagggggatgggaggt 224262
>gi|22059709|ref|NT_028406.7|HsX_28565 Homo sapiens chromosome X reference
genomic contig
Length = 2472203
Score = 38.2 bits (19), Expect = 9.8
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 470 cctggccttcatcagtctggacc 492
||||||||||||||| |||||||
Sbjct: 2306040 cctggccttcatcagcctggacc 2306062
>gi|22059011|ref|NT_025319.10|HsX_25475 Homo sapiens chromosome X reference
genomic contig
Length = 3020093
Score = 38.2 bits (19), Expect = 9.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 353 tgtcctcacacttcccttc 371
|||||||||||||||||||
Sbjct: 2746809 tgtcctcacacttcccttc 2746827
>gi|22056112|ref|NT_011651.10|HsX_11808 Homo sapiens chromosome X reference
genomic contig
Length = 3978552
Score = 38.2 bits (19), Expect = 9.8
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 764 caagctgtcccactccaag 782
|||||||||||||||||||
Sbjct: 2916184 caagctgtcccactccaag 2916166
>gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome 9 reference
genomic contig
Length = 16078776
Score = 38.2 bits (19), Expect = 9.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 291 aagaaactgagaagcatga 309
|||||||||||||||||||
Sbjct: 3084466 aagaaactgagaagcatga 3084484
>gi|22058645|ref|NT_007540.10|Hs6_7697 Homo sapiens chromosome 6 reference
genomic contig
Length = 6326152
Score = 38.2 bits (19), Expect = 9.8
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 223 tctactccatcatcttctt 241
|||||||||||||||||||
Sbjct: 6281393 tctactccatcatcttctt 6281411
Database: Homo Sapiens Gene(masked sequence)
Posted date: Nov 13, 2002 9:59 PM
Number of letters in database: 2,826,392,627
Number of sequences in database: 1395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1080
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1059
effective length of database: 2,826,363,332
effective search space: 2993118768588
effective search space used: 2993118768588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)