Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-003703


Query

>20030531C-003703 (20030531C-003703) 20030531C-003703
AGTCTGTTGG CTGCGGCAGC AGGTAGCAAA GTGACCCTGA GGACTTGAGT
GCTCCGGTAG CCCCCGCGGC TGGAGAGTGA GCAGTTACCA TGGACGGGTT
CCGTATATTC ACTTCAGATA ATTACACAGA GGATGACTTG GGCTCAGGTG
ACTATGACTC CATAAAGGAA CCCTGTTTCC GGGAGGAAAA TGCCCATTTC
AACCGAATCT TTCTGCCCAC TGTCTACTCC ATCATCTTCT TAACTGGCAT
AGTGGGTAAT GGATTGGTCA TCCTGGTCAT GGGTTACCAG AAGAAACTGA
GAAGCATGAC GGACAAGTAC AGACTGCACC TGTCTGTGGC AGACCTTCTC
TTTGTCCTCA CACTTCCCTT CTGGGCAGTT GATGCCGTGG CAAACTGGTA
CTTTGGGAAG TTTCTGTGCA AGGCAGTCCA TGTCATCTAT ACTGTCAATC
TCTACAGCAG TGTGCTCATC CTGGCCTTCA TCAGTCTGGA CCGGTACCTG
GCTATCGTCC ATGCCACCAA CAGTCAGAGG CCAAGGAAGC TATTGGCTGA
AAAAGTGGTC TATGTCGGCG TCTGGATACC TGCCCTCCTG TTGACTATTC
CTGATTTCAT CTTTGCGAAT GTCAGGGAGG GGGATGGGAG GTACATCTGT
GACCGCTTCT ACCCCAATGA CCTGTGGTTA GTGGTGTTCC AGTTTCAGCA
CATCATGGTT GGCCTTATCC TGCCGGGTAT TGTCATCCTA TCTTGCTATT
GCATCATCAT CTCCAAGCTG TCCCACTCCA AGGGCTATCA GAAGCGCAAA
GCTCTCAAAA CCACCGTTAT CCTCATCCTG GCTTTCTTCG CCTGCTGGCT
GCCATACTAC ATCGGGATCA GCATCGACTC CTTCATCCTC CTGGAAATCA
TCCAGCAAGG GTGTGAGTTT GAGAGCACTG TGCACAAGTG GATTTCCATC
ACTGAGGCCC TTGCCTTTTT CCACTGTTGC CTGAATCCTA TCCTCTACGC
TTTCCTTGGA GCCAAATTTA AAACCTCTGC CCAGCACGCA CTCACCTCTG
TGAGCAGAGG GTCCAGCCTA AAGATCCTCT

Search to ncbiHGDS database

Query= 20030531C-003703 (20030531C-003703) 20030531C-003703
         (1080 letters)

Database: Homo Sapiens Gene(masked sequence)
           1395 sequences; 2,826,392,627 total letters

Searching...................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|22043173|ref|NT_034488.1|Hs2_34650 Homo sapiens chromosome 2...  1265  0.0
Alignment   gi|22045639|ref|NT_005403.10|Hs2_5560 Homo sapiens chromosome 2...    52  6e-04
Alignment   gi|22041414|ref|NT_021977.12|Hs1_22133 Homo sapiens chromosome ...    46  0.040
Alignment   gi|22051774|ref|NT_030059.7|Hs10_30314 Homo sapiens chromosome ...    44  0.16
Alignment   gi|22053291|ref|NT_033922.2|Hs13_34077 Homo sapiens chromosome ...    42  0.63
Alignment   gi|22058798|ref|NT_035236.1|Hs12_35398 Homo sapiens chromosome ...    42  0.63
Alignment   gi|22063498|ref|NT_033901.2|Hs11_34056 Homo sapiens chromosome ...    42  0.63
Alignment   gi|22044260|ref|NT_004321.12|Hs1_4478 Homo sapiens chromosome 1...    42  0.63
Alignment   gi|22053317|ref|NT_019424.10|Hs6_19580 Homo sapiens chromosome ...    40  2.5
Alignment   gi|22044733|ref|NT_006383.12|Hs4_6540 Homo sapiens chromosome 4...    40  2.5
Alignment   gi|22067223|ref|NT_011512.6|Hs21_11669 Homo sapiens chromosome ...    40  2.5
Alignment   gi|20559789|ref|NT_011387.7|Hs20_11544 Homo sapiens chromosome ...    40  2.5
Alignment   gi|22044123|ref|NT_005204.10|Hs2_5361 Homo sapiens chromosome 2...    40  2.5
Alignment   gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome ...    40  2.5
Alignment   gi|22059914|ref|NT_030874.4|HsX_31130 Homo sapiens chromosome X...    38  9.8
Alignment   gi|22059709|ref|NT_028406.7|HsX_28565 Homo sapiens chromosome X...    38  9.8
Alignment   gi|22059011|ref|NT_025319.10|HsX_25475 Homo sapiens chromosome ...    38  9.8
Alignment   gi|22056112|ref|NT_011651.10|HsX_11808 Homo sapiens chromosome ...    38  9.8
Alignment   gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome ...    38  9.8
Alignment   gi|22058645|ref|NT_007540.10|Hs6_7697 Homo sapiens chromosome 6...    38  9.8


>gi|22043173|ref|NT_034488.1|Hs2_34650 Homo sapiens chromosome 2 reference
              genomic contig
          Length = 2246521

 Score = 1265 bits (638), Expect = 0.0
 Identities = 866/942 (91%)
 Strand = Plus / Minus


Query: 139    tgggctcaggtgactatgactccataaaggaaccctgtttccgggaggaaaatgcccatt 198
              |||||||||| |||||||||||||| ||||||||||||||||| || ||||||||  |||
Sbjct: 419899 tgggctcaggggactatgactccatgaaggaaccctgtttccgtgaagaaaatgctaatt 419840


Query: 199    tcaaccgaatctttctgcccactgtctactccatcatcttcttaactggcatagtgggta 258
              ||||   |||||| ||||||||  |||||||||||||||||||||||||||| ||||| |
Sbjct: 419839 tcaataaaatcttcctgcccaccatctactccatcatcttcttaactggcattgtgggca 419780


Query: 259    atggattggtcatcctggtcatgggttaccagaagaaactgagaagcatgacggacaagt 318
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419779 atggattggtcatcctggtcatgggttaccagaagaaactgagaagcatgacggacaagt 419720


Query: 319    acagactgcacctgtctgtggcagaccttctctttgtcctcacacttcccttctgggcag 378
              |||| ||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||
Sbjct: 419719 acaggctgcacctgtcagtggccgacctcctctttgtcatcacgcttcccttctgggcag 419660


Query: 379    ttgatgccgtggcaaactggtactttgggaagtttctgtgcaaggcagtccatgtcatct 438
              ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 419659 ttgatgccgtggcaaactggtactttgggaacttcctatgcaaggcagtccatgtcatct 419600


Query: 439    atactgtcaatctctacagcagtgtgctcatcctggccttcatcagtctggaccggtacc 498
              | || ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 419599 acacagtcaacctctacagcagtgtcctcatcctggccttcatcagtctggaccgctacc 419540


Query: 499    tggctatcgtccatgccaccaacagtcagaggccaaggaagctattggctgaaaaagtgg 558
              |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 419539 tggccatcgtccacgccaccaacagtcagaggccaaggaagctgttggctgaaaaggtgg 419480


Query: 559    tctatgtcggcgtctggatacctgccctcctgttgactattcctgatttcatctttgcga 618
              ||||||| ||||||||||| |||||||||||| |||||||||| || ||||||||||| |
Sbjct: 419479 tctatgttggcgtctggatccctgccctcctgctgactattcccgacttcatctttgcca 419420


Query: 619    atgtcagggagggggatgggaggtacatctgtgaccgcttctaccccaatgacctgtggt 678
              | ||||| ||||  ||||  || || ||||||||||||||||||||||||||| |||||
Sbjct: 419419 acgtcagtgaggcagatgacagatatatctgtgaccgcttctaccccaatgacttgtggg 419360


Query: 679    tagtggtgttccagtttcagcacatcatggttggccttatcctgccgggtattgtcatcc 738
              | || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 419359 tggttgtgttccagtttcagcacatcatggttggccttatcctgcctggtattgtcatcc 419300


Query: 739    tatcttgctattgcatcatcatctccaagctgtcccactccaagggctatcagaagcgca 798
              | || ||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 419299 tgtcctgctattgcattatcatctccaagctgtcacactccaagggccaccagaagcgca 419240


Query: 799    aagctctcaaaaccaccgttatcctcatcctggctttcttcgcctgctggctgccatact 858
              | || ||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||
Sbjct: 419239 aggccctcaagaccacagtcatcctcatcctggctttcttcgcctgttggctgccttact 419180


Query: 859    acatcgggatcagcatcgactccttcatcctcctggaaatcatccagcaagggtgtgagt 918
              |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 419179 acattgggatcagcatcgactccttcatcctcctggaaatcatcaagcaagggtgtgagt 419120


Query: 919    ttgagagcactgtgcacaagtggatttccatcactgaggcccttgcctttttccactgtt 978
              |||||| ||||||||||||||||||||||||||| |||||||| || || ||||||||||
Sbjct: 419119 ttgagaacactgtgcacaagtggatttccatcaccgaggccctagctttcttccactgtt 419060


Query: 979    gcctgaatcctatcctctacgctttccttggagccaaatttaaaacctctgcccagcacg 1038
              | ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 419059 gtctgaaccccatcctctatgctttccttggagccaaatttaaaacctctgcccagcacg 419000


Query: 1039   cactcacctctgtgagcagagggtccagcctaaagatcctct 1080
              ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 418999 cactcacctctgtgagcagagggtccagcctcaagatcctct 418958


 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus


Query: 5      tgttggctgcggcagcaggtagcaaagtgaccctgaggacttgagtgctccggtagcccc 64
              ||||||||||||||||||||||||||||||| | |||| | |||||||||| |||||| |
Sbjct: 422163 tgttggctgcggcagcaggtagcaaagtgacgccgagggcctgagtgctccagtagccac 422104


Query: 65     cgcggctggagagtgagcagttaccatgga 94
              |||  |||||||   ||| |||||||||||
Sbjct: 422103 cgcatctggagaaccagcggttaccatgga 422074



>gi|22045639|ref|NT_005403.10|Hs2_5560 Homo sapiens chromosome 2
            reference genomic contig
          Length = 14990191

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus


Query: 472  tggccttcatcagtctggaccggtacctggctatcgtccatgccac 517
            |||||| ||||||| ||||||| |||||||| || |||||||||||
Sbjct: 7138 tggcctgcatcagtgtggaccgttacctggccattgtccatgccac 7093



>gi|22041414|ref|NT_021977.12|Hs1_22133 Homo sapiens chromosome 1
              reference genomic contig
          Length = 1375079

 Score = 46.1 bits (23), Expect = 0.040
 Identities = 29/31 (93%)
 Strand = Plus / Minus


Query: 103    gtatattcacttcagataattacacagagga 133
              ||||| ||||| |||||||||||||||||||
Sbjct: 955594 gtataatcactccagataattacacagagga 955564



>gi|22051774|ref|NT_030059.7|Hs10_30314 Homo sapiens chromosome 10 reference
                genomic contig
          Length = 20700699

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus


Query: 457      gcagtgtgctcatcctggcctt 478
                ||||||||||||||||||||||
Sbjct: 17766838 gcagtgtgctcatcctggcctt 17766859


 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 960     cttgcctttttccactgttg 979
               ||||||||||||||||||||
Sbjct: 9642911 cttgcctttttccactgttg 9642930



>gi|22053291|ref|NT_033922.2|Hs13_34077 Homo sapiens chromosome 13 reference
               genomic contig
          Length = 10951376

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 232     tcatcttcttaactggcatag 252
               |||||||||||||||||||||
Sbjct: 9823212 tcatcttcttaactggcatag 9823232


 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 373     gggcagttgatgccgtggc 391
               |||||||||||||||||||
Sbjct: 4006128 gggcagttgatgccgtggc 4006146



>gi|22058798|ref|NT_035236.1|Hs12_35398 Homo sapiens chromosome 12
              reference genomic contig
          Length = 814570

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Minus


Query: 128    agaggatgacttgggctcagg 148
              |||||||||||||||||||||
Sbjct: 199252 agaggatgacttgggctcagg 199232



>gi|22063498|ref|NT_033901.2|Hs11_34056 Homo sapiens chromosome 11
              reference genomic contig
          Length = 1601393

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 24/25 (96%)
 Strand = Plus / Plus


Query: 413    tctgtgcaaggcagtccatgtcatc 437
              ||||||||||||| |||||||||||
Sbjct: 568502 tctgtgcaaggcactccatgtcatc 568526



>gi|22044260|ref|NT_004321.12|Hs1_4478 Homo sapiens chromosome 1
             reference genomic contig
          Length = 1131467

 Score = 42.1 bits (21), Expect = 0.63
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 324   ctgcacctgtctgtggcagac 344
             |||||||||||||||||||||
Sbjct: 15473 ctgcacctgtctgtggcagac 15493



>gi|22053317|ref|NT_019424.10|Hs6_19580 Homo sapiens chromosome 6 reference
               genomic contig
          Length = 7107542

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 413     tctgtgcaaggcagtccatg 432
               ||||||||||||||||||||
Sbjct: 4781680 tctgtgcaaggcagtccatg 4781661



>gi|22044733|ref|NT_006383.12|Hs4_6540 Homo sapiens chromosome 4 reference
               genomic contig
          Length = 5239069

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 343     accttctctttgtcctcaca 362
               ||||||||||||||||||||
Sbjct: 2084342 accttctctttgtcctcaca 2084323



>gi|22067223|ref|NT_011512.6|Hs21_11669 Homo sapiens chromosome 21 reference
               genomic contig
          Length = 28515771

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 595     ctattcctgatttcatcttt 614
               ||||||||||||||||||||
Sbjct: 7557520 ctattcctgatttcatcttt 7557539



>gi|20559789|ref|NT_011387.7|Hs20_11544 Homo sapiens chromosome 20 reference
               genomic contig
          Length = 26257626

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 1045    cctctgtgagcagagggtcc 1064
               ||||||||||||||||||||
Sbjct: 3611229 cctctgtgagcagagggtcc 3611210


 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 126     acagaggatgacttgggct 144
               |||||||||||||||||||
Sbjct: 8822748 acagaggatgacttgggct 8822766



>gi|22044123|ref|NT_005204.10|Hs2_5361 Homo sapiens chromosome 2 reference
              genomic contig
          Length = 7084632

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 129    gaggatgacttgggctcagg 148
              ||||||||||||||||||||
Sbjct: 592307 gaggatgacttgggctcagg 592288



>gi|22048717|ref|NT_025892.9|Hs14_26048 Homo sapiens chromosome 14 reference
                genomic contig
          Length = 46538979

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 129      gaggatgacttgggctcagg 148
                ||||||||||||||||||||
Sbjct: 12230219 gaggatgacttgggctcagg 12230200


 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 1043    cacctctgtgagcagagggt 1062
               ||||||||||||||||||||
Sbjct: 8676215 cacctctgtgagcagagggt 8676196



>gi|22059914|ref|NT_030874.4|HsX_31130 Homo sapiens chromosome X reference
              genomic contig
          Length = 725530

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus


Query: 624    agggagggggatgggaggt 642
              |||||||||||||||||||
Sbjct: 224280 agggagggggatgggaggt 224262



>gi|22059709|ref|NT_028406.7|HsX_28565 Homo sapiens chromosome X reference
               genomic contig
          Length = 2472203

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus


Query: 470     cctggccttcatcagtctggacc 492
               ||||||||||||||| |||||||
Sbjct: 2306040 cctggccttcatcagcctggacc 2306062



>gi|22059011|ref|NT_025319.10|HsX_25475 Homo sapiens chromosome X reference
               genomic contig
          Length = 3020093

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 353     tgtcctcacacttcccttc 371
               |||||||||||||||||||
Sbjct: 2746809 tgtcctcacacttcccttc 2746827



>gi|22056112|ref|NT_011651.10|HsX_11808 Homo sapiens chromosome X reference
               genomic contig
          Length = 3978552

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus


Query: 764     caagctgtcccactccaag 782
               |||||||||||||||||||
Sbjct: 2916184 caagctgtcccactccaag 2916166



>gi|22045221|ref|NT_017568.10|Hs9_17724 Homo sapiens chromosome 9 reference
               genomic contig
          Length = 16078776

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 291     aagaaactgagaagcatga 309
               |||||||||||||||||||
Sbjct: 3084466 aagaaactgagaagcatga 3084484



>gi|22058645|ref|NT_007540.10|Hs6_7697 Homo sapiens chromosome 6 reference
               genomic contig
          Length = 6326152

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 223     tctactccatcatcttctt 241
               |||||||||||||||||||
Sbjct: 6281393 tctactccatcatcttctt 6281411


  Database: Homo Sapiens Gene(masked sequence)
    Posted date:  Nov 13, 2002  9:59 PM
  Number of letters in database: 2,826,392,627
  Number of sequences in database:  1395

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1080
length of database: 2,826,392,627
effective HSP length: 21
effective length of query: 1059
effective length of database: 2,826,363,332
effective search space: 2993118768588
effective search space used: 2993118768588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)