Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-000541


Query

>20030531C-000541 (20030531C-000541) 20030531C-000541
AAAAGGGCAT GATGGGCGGG GGAGTTTTCC CGGCTCACTG TACCGCCTCT
CTGGCTGTCG AGTCGATAAT CCTAACGACG TTAAAGTCGT TTTTATTTCA
AGAAATCAAC AGAAAACAAG TCCCACCTCT AAAACTCAGC TGACGAGAAG
TGGGGTGTGC GGCGGCGAGT TCGAGAGCTA CGGGGCTTCA AACGCAGGAG
TGGGTTTTCT GGGTTTCTGG GTTCCTGGGT TCCCGGCGCA CCTCCTCCCG
GCACTCTACG CGCCTCGACC CACTACCTAG GCCCATGGGA ACTCAGAAGC
CTCGGATCCT GCCCTGGCTG ATATCTCAGC TGAACCAGGG GCAACTGGAG
GGCGTGGCCT GGCTGGATGA GGGCCACACG CGCTTCCGCA TCCCTTGGAA
GCACGGCTTG CGGCAGGATG CCCAGCAGGA GGACTTCGGC ATCTTCCAGG
CCTGGGCCGA GGCCAGTGGT GCCTACACTC CTGGGAAGGA TAAGCCCGAC
CTGCCCACCT GGAAGAGGAA TTTCCGGTCT GCCCTGAACC GGAAAGAAGC
ATTGCGTTTA GCAGAGGACC ACAGCAAGGA CCCCCACGAC CCACACAAGA
TCTATGAGTT TGTGACCTCA GGAGTTGGGG ACTTTCCTGA GCCAGACACC
TCTCTAGACC TCAGTGGCAG ATACAGTACC TCTGATACCC ACGAAGACAG
TCTGGATAAG TTACTAAGTG GCATGGACTT GGCCTCGGAT GCAGGGCCCC
CGAGCCTGAC CCTGGCCCTC GAGCAGCCCC CTCAGCTCTC CCTGAGCCCC
AGTGTAGACG CCCCCGCTTC TTGCCCCAAC CTGGGAGTCC GTGAAAACCC
ACTGAAGCAG CTGCTGGCGA ATGACGACGA GTGGGAGTTC CAGGTGACCG
TCTTCTACCG GGGCTGCCAA GTCTTCCAGC AGACTGTCTG CAGCCCGGGG
GGCCTGCGGC TGGTGGGATC CCAGGCCGAG GACGGGACGC TGGCCGGGC

Search to RefSeq (Human) database

Query= 20030531C-000541 (20030531C-000541) 20030531C-000541
         (999 letters)

Database: RefSeq (Homo Sapiens/Amino Acid)
           19,244 sequences; 10,046,356 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|4504725|ref|NP_001562.1| (NM_001571) interferon regulatory f...   356  1e-98
Alignment   gi|14249182|ref|NP_116032.1| (NM_032643) interferon regulatory ...   108  4e-24
Alignment   gi|4504727|ref|NP_002191.1| (NM_002200) interferon regulatory f...   103  1e-22
Alignment   gi|5453700|ref|NP_006138.1| (NM_006147) interferon regulatory f...   103  2e-22
Alignment   gi|4809288|ref|NP_004022.1| (NM_004031) interferon regulatory f...   100  2e-21
Alignment   gi|4809286|ref|NP_004021.1| (NM_004030) interferon regulatory f...    97  2e-20
Alignment   gi|4809284|ref|NP_004020.1| (NM_004029) interferon regulatory f...    97  2e-20
Alignment   gi|4758610|ref|NP_001563.2| (NM_001572) interferon regulatory f...    97  2e-20
Alignment   gi|4505287|ref|NP_002451.1| (NM_002460) interferon regulatory f...    94  1e-19
Alignment   gi|4504567|ref|NP_002154.1| (NM_002163) interferon consensus se...    82  4e-16


>gi|4504725|ref|NP_001562.1| (NM_001571) interferon regulatory
           factor 3 [Homo sapiens]
          Length = 427

 Score =  356 bits (914), Expect = 1e-98
 Identities = 176/240 (73%), Positives = 193/240 (80%), Gaps = 2/240 (0%)
 Frame = +3

Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEA 464
           MGT KPRILPWL+SQL+ GQLEGVAW+++  TRFRIPWKHGLRQDAQQEDFGIFQAWAEA
Sbjct: 1   MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA 60

Query: 465 SGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKDPHDPHKIYEFVTSGVGDFPEP 644
           +GAY PG+DKPDLPTWKRNFRSALNRKE LRLAED SKDPHDPHKIYEFV SGVGDF +P
Sbjct: 61  TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP 120

Query: 645 DTSLDLSGRYSTSDTHEDSLDKLLSGMDLA--SDAGPPSLTLALEQPPQLSLSPSVDAPA 818
           DTS D +G  STSDT ED LD+LL  M LA   D GPPSL +A E  PQ   SPS+D P
Sbjct: 121 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT 180

Query: 819 SCPNLGVRENPLKQLLANDDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAEDGTLAG 998
             PNLG  ENPLK+LL   +EWEF+VT FYRG QVFQQT+  P GLRLVGS+  D TL G
Sbjct: 181 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG 240



>gi|14249182|ref|NP_116032.1| (NM_032643) interferon regulatory
           factor 5 isoform b [Homo sapiens]
          Length = 498

 Score =  108 bits (271), Expect = 4e-24
 Identities = 90/280 (32%), Positives = 123/280 (43%), Gaps = 47/280 (16%)
 Frame = +3

Query: 282 PMGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWA 458
           P   ++ R+ PWL++Q+N  Q  G+ W++     F IPW+H  R    Q+ D  IF+AWA
Sbjct: 9   PTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWA 68

Query: 459 EASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDF 635
           + +G YT G D+ D   WK N R ALN+    RL  D  +D P  P+KIYE  ++G
Sbjct: 69  KETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNG---- 124

Query: 636 PEPDTSL---DLSGRYSTSDTHEDSLDKLLSGMDLASDA------GPPSLTLALEQPPQL 788
           P P  S    D S      +  E+ L ++L  + L  D        PP+L     QPP L
Sbjct: 125 PAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTL 184

Query: 789 SLSPSVDAPASCPN---------LGVRE--------NPL--------KQLLAN------- 872
                +  PA  P+          G RE         PL        +QLL +
Sbjct: 185 QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHM 244

Query: 873 ----DDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAE 980
               D E +FQ    YRG      T+ +P G RL  SQ E
Sbjct: 245 LPLTDLEIKFQ----YRGRPPRALTISNPHGCRLFYSQLE 280



>gi|4504727|ref|NP_002191.1| (NM_002200) interferon regulatory
           factor 5 isoform a [Homo sapiens]
          Length = 504

 Score =  103 bits (258), Expect = 1e-22
 Identities = 90/288 (31%), Positives = 123/288 (42%), Gaps = 55/288 (19%)
 Frame = +3

Query: 282 PMGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWA 458
           P   ++ R+ PWL++Q+N  Q  G+ W++     F IPW+H  R    Q+ D  IF+AWA
Sbjct: 9   PTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWA 68

Query: 459 EASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDF 635
           + +G YT G D+ D   WK N R ALN+    RL  D  +D P  P+KIYE  ++G
Sbjct: 69  KETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNG---- 124

Query: 636 PEPDTSL---DLSGRYSTSDTHEDSLDKLLSGMDL--ASDAG---------------PPS 755
           P P  S    D S      +  E+ L ++L  + L  A  +G               PP+
Sbjct: 125 PAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPT 184

Query: 756 LTLALEQPPQLSLSPSVD--------------------------APASCPNLGVRENPLK 857
           L     QPP +   P+ D                           PAS P  G  E  L
Sbjct: 185 LQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAG--EQLLP 242

Query: 858 QLLAN-------DDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAE 980
            LL +       D E +FQ    YRG      T+ +P G RL  SQ E
Sbjct: 243 DLLISPHMLPLTDLEIKFQ----YRGRPPRALTISNPHGCRLFYSQLE 286



>gi|5453700|ref|NP_006138.1| (NM_006147) interferon regulatory
           factor 6; Popliteala pterygium syndrome [Homo sapiens]
          Length = 467

 Score =  103 bits (256), Expect = 2e-22
 Identities = 77/253 (30%), Positives = 115/253 (45%), Gaps = 30/253 (11%)
 Frame = +3

Query: 294 QKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFG-IFQAWAEASG 470
           ++ R+ PWL++Q++ G   G+ WL     RF+IPWKH  R   QQE+   IF+AWA  +G
Sbjct: 6   RRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETG 65

Query: 471 AYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDFPEPD 647
            Y  G D PD   WK   R ALN+     L  D +K+ P +P KIY+     V D P+P
Sbjct: 66  KYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCDIPQPQ 120

Query: 648 TSLDLSGRYSTSDTHEDSLDKLLSGMDLASDAGPPSLTLALEQP-PQLSLSPSVDAPASC 824
            S+   G  ST     D  D  +   D   +       + ++   P L+++ S  APAS
Sbjct: 121 GSIINPG--STGSAPWDEKDNDVDEEDEEDELDQSQHHVPIQDTFPFLNINGSPMAPASV 178

Query: 825 PN-------------------LGVRENPLKQLLANDDEW-------EFQVTVFYRGCQVF 926
            N                   + V + P++   ++ + W       +  +   YRG +
Sbjct: 179 GNCSVGNCSPEAVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYG 238

Query: 927 Q-QTVCSPGGLRL 962
           Q  TV +P G RL
Sbjct: 239 QTMTVSNPQGCRL 251



>gi|4809288|ref|NP_004022.1| (NM_004031) interferon regulatory
           factor 7 isoform d [Homo sapiens]
          Length = 516

 Score =  100 bits (248), Expect = 2e-21
 Identities = 54/123 (43%), Positives = 71/123 (56%), Gaps = 13/123 (10%)
 Frame = +3

Query: 276 PRPMGTQK--PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGI 443
           PRP GT++  PR+L   WL+ +++ G  EG+ WLDE  T FR+PWKH  R+D  + D  I
Sbjct: 14  PRP-GTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARI 72

Query: 444 FQAWAEASGAYTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPH 596
           F+AWA A G + P    G   P+  T     WK NFR AL       +  D+S DP DPH
Sbjct: 73  FKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPH 132

Query: 597 KIY 605
           K+Y
Sbjct: 133 KVY 135



>gi|4809286|ref|NP_004021.1| (NM_004030) interferon regulatory
           factor 7, transcript variant c [Homo sapiens]
          Length = 164

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
 Frame = +3

Query: 300 PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGA 473
           PR+L   WL+ +++ G  EG+ WLDE  T FR+PWKH  R+D  + D  IF+AWA A G
Sbjct: 10  PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69

Query: 474 YTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPHKIY 605
           + P    G   P+  T     WK NFR AL       +  D+S DP DPHK+Y
Sbjct: 70  WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVY 122



>gi|4809284|ref|NP_004020.1| (NM_004029) interferon regulatory
           factor 7 isoform b [Homo sapiens]
          Length = 474

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
 Frame = +3

Query: 300 PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGA 473
           PR+L   WL+ +++ G  EG+ WLDE  T FR+PWKH  R+D  + D  IF+AWA A G
Sbjct: 10  PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69

Query: 474 YTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPHKIY 605
           + P    G   P+  T     WK NFR AL       +  D+S DP DPHK+Y
Sbjct: 70  WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVY 122



>gi|4758610|ref|NP_001563.2| (NM_001572) interferon regulatory
           factor 7 isoform a [Homo sapiens]
          Length = 503

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
 Frame = +3

Query: 300 PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGA 473
           PR+L   WL+ +++ G  EG+ WLDE  T FR+PWKH  R+D  + D  IF+AWA A G
Sbjct: 10  PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69

Query: 474 YTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPHKIY 605
           + P    G   P+  T     WK NFR AL       +  D+S DP DPHK+Y
Sbjct: 70  WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVY 122



>gi|4505287|ref|NP_002451.1| (NM_002460) interferon regulatory
           factor 4; multiple myeloma oncogene 1 [Homo sapiens]
          Length = 451

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
 Frame = +3

Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDA-QQEDFGIFQAWAEASGAYT 479
           ++  WLI Q++ G+  G+ W +E  + FRIPWKH  +QD  ++ED  +F+AWA   G +
Sbjct: 23  KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82

Query: 480 PGKDKPDLPTWKRNFRSALNRKEAL-RLAEDHSKDPHDPHKIYEFVTSG 623
            G DKPD PTWK   R ALN+      L E    D  DP+K+Y  V  G
Sbjct: 83  EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG 131



>gi|4504567|ref|NP_002154.1| (NM_002163) interferon consensus
           sequence binding protein 1; H-ICSBP; interferon
           regulatory factor 8 [Homo sapiens]
          Length = 426

 Score = 82.4 bits (202), Expect = 4e-16
 Identities = 68/243 (27%), Positives = 98/243 (39%), Gaps = 19/243 (7%)
 Frame = +3

Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWAEASGAYT 479
           R+  WLI Q++     G+ W +E  + FRIPWKH  +QD  QE D  IF+AWA   G +
Sbjct: 9   RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68

Query: 480 PGKDKPDLPTWKRNFRSALNRKEALRLAEDHSK-DPHDPHKIYEFVTSGVGDFPEPDTSL 656
            G DK +  TWK   R ALN+        D S+ D  +P+K+Y  V       PE +
Sbjct: 69  EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIV-------PEEEQKC 120

Query: 657 DLS-------GRYSTSDTHEDSLDKLLS--------GMDLASDAGPPSLTLALEQPPQLS 791
            L           +  +     +D+L+         GM +     PP    +   P   +
Sbjct: 121 KLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGM-IKRSPSPPEACRSQLLPDWWA 179

Query: 792 LSPSVDAP--ASCPNLGVRENPLKQLLANDDEWEFQVTVFYRGCQVFQQTVCSPGGLRLV 965
             PS   P            +   Q++         ++ +Y G  V Q T   P G RL
Sbjct: 180 QQPSTGVPLVTGYTTYDAHHSAFSQMV---------ISFYYGGKLVGQATTTCPEGCRLS 230

Query: 966 GSQ 974
            SQ
Sbjct: 231 LSQ 233


  Database: RefSeq (Homo Sapiens/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 10,046,356
  Number of sequences in database:  19,244

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22392919
Number of Sequences: 19244
Number of extensions: 624306
Number of successful extensions: 4172
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 3623
length of query: 333
length of database: 10,046,356
effective HSP length: 47
effective length of query: 285
effective length of database: 9,141,888
effective search space: 2605438080
effective search space used: 2605438080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search to RefSeq (Mouse) database

Query= 20030531C-000541 (20030531C-000541) 20030531C-000541
         (999 letters)

Database: RefSeq (Mus Musculus/Amino Acid)
           15,330 sequences; 7,155,815 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|8393627|ref|NP_058545.1| (NM_016849) interferon regulatory f...   286  8e-78
Alignment   gi|6754368|ref|NP_036187.1| (NM_012057) interferon regulatory f...   107  1e-23
Alignment   gi|8567364|ref|NP_058546.1| (NM_016850) interferon regulatory f...   101  7e-22
Alignment   gi|8393630|ref|NP_058547.1| (NM_016851) interferon regulatory f...   100  1e-21
Alignment   gi|30017401|ref|NP_835184.1| (NM_178083) interferon regulatory ...    96  3e-20
Alignment   gi|7305519|ref|NP_038702.1| (NM_013674) interferon regulatory f...    94  8e-20
Alignment   gi|6680339|ref|NP_032346.1| (NM_008320) interferon consensus se...    82  5e-16
Alignment   gi|31982243|ref|NP_032417.2| (NM_008391) interferon regulatory ...    80  2e-15
Alignment   gi|6680467|ref|NP_032416.1| (NM_008390) interferon regulatory f...    77  1e-14
Alignment   gi|6680474|ref|NP_032420.1| (NM_008394) interferon dependent po...    71  9e-13


>gi|8393627|ref|NP_058545.1| (NM_016849) interferon regulatory
           factor 3 [Mus musculus]
          Length = 419

 Score =  286 bits (733), Expect = 8e-78
 Identities = 151/234 (64%), Positives = 174/234 (73%), Gaps = 2/234 (0%)
 Frame = +3

Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEA 464
           M T KPRILPWL+SQL+ GQLEGVAWLDE  TRFRIPWKHGLRQDAQ  DFGIFQAWAEA
Sbjct: 1   METPKPRILPWLVSQLDLGQLEGVAWLDESRTRFRIPWKHGLRQDAQMADFGIFQAWAEA 60

Query: 465 SGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKDPHDPHKIYEFVTSGVGDFPEP 644
           SGAYTPGKDKPD+ TWKRNFRSALNRKE LRLA D+SKDP+DPHK+YEFVT G  DF
Sbjct: 61  SGAYTPGKDKPDVSTWKRNFRSALNRKEVLRLAADNSKDPYDPHKVYEFVTPGARDFVHL 120

Query: 645 DTSLDLSGRYSTSDTHEDSLDKLLSGMDLA--SDAGPPSLTLALEQPPQLSLSPSVDAPA 818
             S D +G+ S   + E +L KL  G+ L    D G   L + +  P Q   SP+V+
Sbjct: 121 GASPDTNGKSSLPHSQE-NLPKLFDGLILGPLKDEGSSDLAI-VSDPSQQLPSPNVN--- 175

Query: 819 SCPNLGVRENPLKQLLANDDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAE 980
           +  N   +ENPLKQLLA +++WEF+VT FYRG QVFQQT+  PGGLRLVGS A+
Sbjct: 176 NFLNPAPQENPLKQLLA-EEQWEFEVTAFYRGRQVFQQTLFCPGGLRLVGSTAD 228



>gi|6754368|ref|NP_036187.1| (NM_012057) interferon regulatory
           factor 5 [Mus musculus]
          Length = 497

 Score =  107 bits (266), Expect = 1e-23
 Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
 Frame = +3

Query: 282 PMGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWA 458
           P   ++ R+ PWL++Q+N  Q  G+ W++     F IPW+H  R    Q+ D  IF+AWA
Sbjct: 9   PPPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSQDGDNTIFKAWA 68

Query: 459 EASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDF 635
           + +G YT G D+ D   WK N R ALN+    +L  D  +D P  P+KIYE  ++G
Sbjct: 69  KETGKYTEGVDEADPAKWKANLRCALNKSRDFQLFYDGPRDMPPQPYKIYEVCSNGPAPT 128

Query: 636 PEPDTSLDLSGRYSTSDTHEDSLDKLLSGMDLASDA--GPPSLTLALEQ-----PPQLSL 794
               T   + G     +  E+ L ++L G+ +   A  GPP+   +L +     PP L
Sbjct: 129 ESQPTDDYVLG--EEEEEEEEELQRMLPGLSITEPALPGPPNAPYSLPKEDTKWPPALQP 186

Query: 795 SPSVDAPASCPNL 833
              +  P   PNL
Sbjct: 187 PVGLGPPVPDPNL 199



>gi|8567364|ref|NP_058546.1| (NM_016850) interferon regulatory
           factor 7 [Mus musculus]
          Length = 457

 Score =  101 bits (251), Expect = 7e-22
 Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
 Frame = +3

Query: 288 GTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEAS 467
           G Q+     WL+ +++ GQ EG+ WL+E  T FR+PWKH  R+D  +ED  IF+AWA A
Sbjct: 6   GVQRVLFGDWLLGEVSSGQYEGLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVAR 65

Query: 468 GAYTP-----------GKDKPDLPTWKRNFRSALNRKEALRLAEDHSKDPHDPHKIYEF- 611
           G + P             ++ +   WK NFR AL+      L +D+S DP DPHK+YE
Sbjct: 66  GRWPPSGVNLPPPEAEAAERRERRGWKTNFRCALHSTGRFILRQDNSGDPVDPHKVYELS 125

Query: 612 --VTSGVGDFPEPDTSLDLSGRYSTSDTHEDS-LDKLLSGMD-----LASDAG 746
             + S VG   E    + LS    T      S L +  +G+      L+SDAG
Sbjct: 126 RELGSTVGPATENREEVSLSNALPTQGVSPGSFLARENAGLQTPSPLLSSDAG 178



>gi|8393630|ref|NP_058547.1| (NM_016851) interferon regulatory
           factor 6 [Mus musculus]
          Length = 467

 Score =  100 bits (249), Expect = 1e-21
 Identities = 76/253 (30%), Positives = 115/253 (45%), Gaps = 30/253 (11%)
 Frame = +3

Query: 294 QKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFG-IFQAWAEASG 470
           ++ R+ PWL++Q++ G   G+ WL     RF+IPWKH  R   QQE+   IF+AWA  +G
Sbjct: 6   RRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETG 65

Query: 471 AYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDFPEPD 647
            Y  G D PD   WK   R ALN+     L  D +K+ P +P KIY+     V D P+P
Sbjct: 66  KYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCDIPQPQ 120

Query: 648 TSLDLSGRYSTSDTHEDSLDKLLSGMDLASDAGPPSLTLALEQP-PQLSLSPSVDAPASC 824
            S+   G  ST     D  D  +   +   +       + ++   P L+++ S  APAS
Sbjct: 121 GSVINPG--STGSAPWDEKDNDVDEDEEEDELEQSQHHVPIQDTFPFLNINGSPMAPASV 178

Query: 825 PN-------------------LGVRENPLKQLLANDDEW-------EFQVTVFYRGCQVF 926
            N                   + V + P++   ++ + W       +  +   YRG +
Sbjct: 179 GNCSVGNCSPESVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYG 238

Query: 927 Q-QTVCSPGGLRL 962
           Q  TV +P G RL
Sbjct: 239 QTMTVSNPQGCRL 251



>gi|30017401|ref|NP_835184.1| (NM_178083) interferon regulatory
           factor 6 [Mus musculus]
          Length = 233

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 63/185 (34%), Positives = 91/185 (49%), Gaps = 3/185 (1%)
 Frame = +3

Query: 294 QKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFG-IFQAWAEASG 470
           ++ R+ PWL++Q++ G   G+ WL     RF+IPWKH  R   QQE+   IF+AWA  +G
Sbjct: 6   RRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETG 65

Query: 471 AYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDFPEPD 647
            Y  G D PD   WK   R ALN+     L  D +K+ P +P KIY+     V D P+
Sbjct: 66  KYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCDIPQTQ 120

Query: 648 TSLDLSGRYSTSDTHEDSLDKLLSGMDLASDAGPPSLTLALEQP-PQLSLSPSVDAPASC 824
            S+   G  ST     D  D  +   +   +       + ++   P L+++ S  APAS
Sbjct: 121 GSVINPG--STGSAPWDEKDNDVDEDEEEDELEQSQHHVPIQDTFPFLNINGSPMAPASV 178

Query: 825 PNLGV 839
            N  V
Sbjct: 179 GNCSV 183



>gi|7305519|ref|NP_038702.1| (NM_013674) interferon regulatory
           factor 4; Sfpi1/PU.1 interaction partner [Mus musculus]
          Length = 450

 Score = 94.4 bits (233), Expect = 8e-20
 Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
 Frame = +3

Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDA-QQEDFGIFQAWAEASGAYT 479
           ++  WLI Q++ G+  G+ W +E  + FRIPWKH  +QD  ++ED  +F+AWA   G +
Sbjct: 23  KLRQWLIDQIDSGKYPGLVWENEEKSVFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82

Query: 480 PGKDKPDLPTWKRNFRSALNRKEAL-RLAEDHSKDPHDPHKIYEFVTSG 623
            G DKPD PTWK   R ALN+      L E    D  DP+K+Y  V  G
Sbjct: 83  EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG 131



>gi|6680339|ref|NP_032346.1| (NM_008320) interferon consensus
           sequence binding protein 1; interferon consensus
           sequence binding protein [Mus musculus]
          Length = 424

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
 Frame = +3

Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWAEASGAYT 479
           R+  WLI Q++     G+ W ++  T FRIPWKH  +QD  QE D  IF+AWA   G +
Sbjct: 9   RLRQWLIEQIDSSMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68

Query: 480 PGKDKPDLPTWKRNFRSALNRKEALRLAEDHSK-DPHDPHKIYEFV 614
            G DK +  TWK   R ALN+        D S+ D  +P+K+Y  V
Sbjct: 69  EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIV 113



>gi|31982243|ref|NP_032417.2| (NM_008391) interferon regulatory
           factor 2 [Mus musculus]
          Length = 349

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 40/112 (35%), Positives = 61/112 (53%), Gaps = 2/112 (1%)
 Frame = +3

Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWAE 461
           M  ++ R+ PWL  Q+N   + G+ WL++    F+IPW H  R     E D  +F+ WA
Sbjct: 1   MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60

Query: 462 ASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHS-KDPHDPHKIYEFV 614
            +G + PG DKPD  TWK NFR A+N    +   +D S K  ++  ++Y  +
Sbjct: 61  HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDRSIKKGNNAFRVYRML 112



>gi|6680467|ref|NP_032416.1| (NM_008390) interferon regulatory
           factor 1 [Mus musculus]
          Length = 329

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
 Frame = +3

Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQ-QEDFGIFQAWAE 461
           M   + R+ PWL  Q+N  Q+ G+ W+++    F+IPWKH  +      +D  +F++WA
Sbjct: 1   MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60

Query: 462 ASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD 581
            +G Y  G+ +PD  TWK NFR A+N    +   +D S++
Sbjct: 61  HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRN 100



>gi|6680474|ref|NP_032420.1| (NM_008394) interferon dependent
           positive acting transcription factor 3 gamma [Mus
           musculus]
          Length = 399

 Score = 70.9 bits (172), Expect = 9e-13
 Identities = 38/109 (34%), Positives = 55/109 (49%), Gaps = 2/109 (1%)
 Frame = +3

Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQD-AQQEDFGIFQAWAEASGAYT 479
           ++  W++ Q+  G   GV W D   T FRIPWKH  +QD  + +D  IF+AWA     +
Sbjct: 11  KLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFKEKHK 70

Query: 480 PGKDKPDLPTWKRNFRSALNR-KEALRLAEDHSKDPHDPHKIYEFVTSG 623
            G D      WK   R ALN+  E   + E    D  +P+K+Y  + +G
Sbjct: 71  DG-DIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAG 118


  Database: RefSeq (Mus Musculus/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 7,155,815
  Number of sequences in database:  15,330

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15609559
Number of Sequences: 15330
Number of extensions: 418100
Number of successful extensions: 2645
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2466
length of query: 333
length of database: 7,155,815
effective HSP length: 47
effective length of query: 285
effective length of database: 6,435,305
effective search space: 1834061925
effective search space used: 1834061925
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)