Search to RefSeq (Human) database
Query= 20030531C-000541 (20030531C-000541) 20030531C-000541
(999 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4504725|ref|NP_001562.1| (NM_001571) interferon regulatory f... 356 1e-98
Alignment gi|14249182|ref|NP_116032.1| (NM_032643) interferon regulatory ... 108 4e-24
Alignment gi|4504727|ref|NP_002191.1| (NM_002200) interferon regulatory f... 103 1e-22
Alignment gi|5453700|ref|NP_006138.1| (NM_006147) interferon regulatory f... 103 2e-22
Alignment gi|4809288|ref|NP_004022.1| (NM_004031) interferon regulatory f... 100 2e-21
Alignment gi|4809286|ref|NP_004021.1| (NM_004030) interferon regulatory f... 97 2e-20
Alignment gi|4809284|ref|NP_004020.1| (NM_004029) interferon regulatory f... 97 2e-20
Alignment gi|4758610|ref|NP_001563.2| (NM_001572) interferon regulatory f... 97 2e-20
Alignment gi|4505287|ref|NP_002451.1| (NM_002460) interferon regulatory f... 94 1e-19
Alignment gi|4504567|ref|NP_002154.1| (NM_002163) interferon consensus se... 82 4e-16
>gi|4504725|ref|NP_001562.1| (NM_001571) interferon regulatory
factor 3 [Homo sapiens]
Length = 427
Score = 356 bits (914), Expect = 1e-98
Identities = 176/240 (73%), Positives = 193/240 (80%), Gaps = 2/240 (0%)
Frame = +3
Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEA 464
MGT KPRILPWL+SQL+ GQLEGVAW+++ TRFRIPWKHGLRQDAQQEDFGIFQAWAEA
Sbjct: 1 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEA 60
Query: 465 SGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKDPHDPHKIYEFVTSGVGDFPEP 644
+GAY PG+DKPDLPTWKRNFRSALNRKE LRLAED SKDPHDPHKIYEFV SGVGDF +P
Sbjct: 61 TGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEFVNSGVGDFSQP 120
Query: 645 DTSLDLSGRYSTSDTHEDSLDKLLSGMDLA--SDAGPPSLTLALEQPPQLSLSPSVDAPA 818
DTS D +G STSDT ED LD+LL M LA D GPPSL +A E PQ SPS+D P
Sbjct: 121 DTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSLAVAPEPCPQPLRSPSLDNPT 180
Query: 819 SCPNLGVRENPLKQLLANDDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAEDGTLAG 998
PNLG ENPLK+LL +EWEF+VT FYRG QVFQQT+ P GLRLVGS+ D TL G
Sbjct: 181 PFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQTISCPEGLRLVGSEVGDRTLPG 240
>gi|14249182|ref|NP_116032.1| (NM_032643) interferon regulatory
factor 5 isoform b [Homo sapiens]
Length = 498
Score = 108 bits (271), Expect = 4e-24
Identities = 90/280 (32%), Positives = 123/280 (43%), Gaps = 47/280 (16%)
Frame = +3
Query: 282 PMGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWA 458
P ++ R+ PWL++Q+N Q G+ W++ F IPW+H R Q+ D IF+AWA
Sbjct: 9 PTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWA 68
Query: 459 EASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDF 635
+ +G YT G D+ D WK N R ALN+ RL D +D P P+KIYE ++G
Sbjct: 69 KETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNG---- 124
Query: 636 PEPDTSL---DLSGRYSTSDTHEDSLDKLLSGMDLASDA------GPPSLTLALEQPPQL 788
P P S D S + E+ L ++L + L D PP+L QPP L
Sbjct: 125 PAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTEDVKWPPTLQPPTLRPPTLQPPTL 184
Query: 789 SLSPSVDAPASCPN---------LGVRE--------NPL--------KQLLAN------- 872
+ PA P+ G RE PL +QLL +
Sbjct: 185 QPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAGEQLLPDLLISPHM 244
Query: 873 ----DDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAE 980
D E +FQ YRG T+ +P G RL SQ E
Sbjct: 245 LPLTDLEIKFQ----YRGRPPRALTISNPHGCRLFYSQLE 280
>gi|4504727|ref|NP_002191.1| (NM_002200) interferon regulatory
factor 5 isoform a [Homo sapiens]
Length = 504
Score = 103 bits (258), Expect = 1e-22
Identities = 90/288 (31%), Positives = 123/288 (42%), Gaps = 55/288 (19%)
Frame = +3
Query: 282 PMGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWA 458
P ++ R+ PWL++Q+N Q G+ W++ F IPW+H R Q+ D IF+AWA
Sbjct: 9 PTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWA 68
Query: 459 EASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDF 635
+ +G YT G D+ D WK N R ALN+ RL D +D P P+KIYE ++G
Sbjct: 69 KETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNG---- 124
Query: 636 PEPDTSL---DLSGRYSTSDTHEDSLDKLLSGMDL--ASDAG---------------PPS 755
P P S D S + E+ L ++L + L A +G PP+
Sbjct: 125 PAPTDSQPPEDYSFGAGEEEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPT 184
Query: 756 LTLALEQPPQLSLSPSVD--------------------------APASCPNLGVRENPLK 857
L QPP + P+ D PAS P G E L
Sbjct: 185 LQPPTLQPPVVLGPPAPDPSPLAPPPGNPAGFRELLSEVLEPGPLPASLPPAG--EQLLP 242
Query: 858 QLLAN-------DDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAE 980
LL + D E +FQ YRG T+ +P G RL SQ E
Sbjct: 243 DLLISPHMLPLTDLEIKFQ----YRGRPPRALTISNPHGCRLFYSQLE 286
>gi|5453700|ref|NP_006138.1| (NM_006147) interferon regulatory
factor 6; Popliteala pterygium syndrome [Homo sapiens]
Length = 467
Score = 103 bits (256), Expect = 2e-22
Identities = 77/253 (30%), Positives = 115/253 (45%), Gaps = 30/253 (11%)
Frame = +3
Query: 294 QKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFG-IFQAWAEASG 470
++ R+ PWL++Q++ G G+ WL RF+IPWKH R QQE+ IF+AWA +G
Sbjct: 6 RRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETG 65
Query: 471 AYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDFPEPD 647
Y G D PD WK R ALN+ L D +K+ P +P KIY+ V D P+P
Sbjct: 66 KYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCDIPQPQ 120
Query: 648 TSLDLSGRYSTSDTHEDSLDKLLSGMDLASDAGPPSLTLALEQP-PQLSLSPSVDAPASC 824
S+ G ST D D + D + + ++ P L+++ S APAS
Sbjct: 121 GSIINPG--STGSAPWDEKDNDVDEEDEEDELDQSQHHVPIQDTFPFLNINGSPMAPASV 178
Query: 825 PN-------------------LGVRENPLKQLLANDDEW-------EFQVTVFYRGCQVF 926
N + V + P++ ++ + W + + YRG +
Sbjct: 179 GNCSVGNCSPEAVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYG 238
Query: 927 Q-QTVCSPGGLRL 962
Q TV +P G RL
Sbjct: 239 QTMTVSNPQGCRL 251
>gi|4809288|ref|NP_004022.1| (NM_004031) interferon regulatory
factor 7 isoform d [Homo sapiens]
Length = 516
Score = 100 bits (248), Expect = 2e-21
Identities = 54/123 (43%), Positives = 71/123 (56%), Gaps = 13/123 (10%)
Frame = +3
Query: 276 PRPMGTQK--PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGI 443
PRP GT++ PR+L WL+ +++ G EG+ WLDE T FR+PWKH R+D + D I
Sbjct: 14 PRP-GTRRAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARI 72
Query: 444 FQAWAEASGAYTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPH 596
F+AWA A G + P G P+ T WK NFR AL + D+S DP DPH
Sbjct: 73 FKAWAVARGRWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPH 132
Query: 597 KIY 605
K+Y
Sbjct: 133 KVY 135
>gi|4809286|ref|NP_004021.1| (NM_004030) interferon regulatory
factor 7, transcript variant c [Homo sapiens]
Length = 164
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Frame = +3
Query: 300 PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGA 473
PR+L WL+ +++ G EG+ WLDE T FR+PWKH R+D + D IF+AWA A G
Sbjct: 10 PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69
Query: 474 YTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPHKIY 605
+ P G P+ T WK NFR AL + D+S DP DPHK+Y
Sbjct: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVY 122
>gi|4809284|ref|NP_004020.1| (NM_004029) interferon regulatory
factor 7 isoform b [Homo sapiens]
Length = 474
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Frame = +3
Query: 300 PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGA 473
PR+L WL+ +++ G EG+ WLDE T FR+PWKH R+D + D IF+AWA A G
Sbjct: 10 PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69
Query: 474 YTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPHKIY 605
+ P G P+ T WK NFR AL + D+S DP DPHK+Y
Sbjct: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVY 122
>gi|4758610|ref|NP_001563.2| (NM_001572) interferon regulatory
factor 7 isoform a [Homo sapiens]
Length = 503
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 11/113 (9%)
Frame = +3
Query: 300 PRIL--PWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEASGA 473
PR+L WL+ +++ G EG+ WLDE T FR+PWKH R+D + D IF+AWA A G
Sbjct: 10 PRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGR 69
Query: 474 YTP----GKDKPDLPT-----WKRNFRSALNRKEALRLAEDHSKDPHDPHKIY 605
+ P G P+ T WK NFR AL + D+S DP DPHK+Y
Sbjct: 70 WPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVY 122
>gi|4505287|ref|NP_002451.1| (NM_002460) interferon regulatory
factor 4; multiple myeloma oncogene 1 [Homo sapiens]
Length = 451
Score = 94.4 bits (233), Expect = 1e-19
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +3
Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDA-QQEDFGIFQAWAEASGAYT 479
++ WLI Q++ G+ G+ W +E + FRIPWKH +QD ++ED +F+AWA G +
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 480 PGKDKPDLPTWKRNFRSALNRKEAL-RLAEDHSKDPHDPHKIYEFVTSG 623
G DKPD PTWK R ALN+ L E D DP+K+Y V G
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG 131
>gi|4504567|ref|NP_002154.1| (NM_002163) interferon consensus
sequence binding protein 1; H-ICSBP; interferon
regulatory factor 8 [Homo sapiens]
Length = 426
Score = 82.4 bits (202), Expect = 4e-16
Identities = 68/243 (27%), Positives = 98/243 (39%), Gaps = 19/243 (7%)
Frame = +3
Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWAEASGAYT 479
R+ WLI Q++ G+ W +E + FRIPWKH +QD QE D IF+AWA G +
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 480 PGKDKPDLPTWKRNFRSALNRKEALRLAEDHSK-DPHDPHKIYEFVTSGVGDFPEPDTSL 656
G DK + TWK R ALN+ D S+ D +P+K+Y V PE +
Sbjct: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIV-------PEEEQKC 120
Query: 657 DLS-------GRYSTSDTHEDSLDKLLS--------GMDLASDAGPPSLTLALEQPPQLS 791
L + + +D+L+ GM + PP + P +
Sbjct: 121 KLGVATAGCVNEVTEMECGRSEIDELIKEPSVDDYMGM-IKRSPSPPEACRSQLLPDWWA 179
Query: 792 LSPSVDAP--ASCPNLGVRENPLKQLLANDDEWEFQVTVFYRGCQVFQQTVCSPGGLRLV 965
PS P + Q++ ++ +Y G V Q T P G RL
Sbjct: 180 QQPSTGVPLVTGYTTYDAHHSAFSQMV---------ISFYYGGKLVGQATTTCPEGCRLS 230
Query: 966 GSQ 974
SQ
Sbjct: 231 LSQ 233
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22392919
Number of Sequences: 19244
Number of extensions: 624306
Number of successful extensions: 4172
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 3623
length of query: 333
length of database: 10,046,356
effective HSP length: 47
effective length of query: 285
effective length of database: 9,141,888
effective search space: 2605438080
effective search space used: 2605438080
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-000541 (20030531C-000541) 20030531C-000541
(999 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|8393627|ref|NP_058545.1| (NM_016849) interferon regulatory f... 286 8e-78
Alignment gi|6754368|ref|NP_036187.1| (NM_012057) interferon regulatory f... 107 1e-23
Alignment gi|8567364|ref|NP_058546.1| (NM_016850) interferon regulatory f... 101 7e-22
Alignment gi|8393630|ref|NP_058547.1| (NM_016851) interferon regulatory f... 100 1e-21
Alignment gi|30017401|ref|NP_835184.1| (NM_178083) interferon regulatory ... 96 3e-20
Alignment gi|7305519|ref|NP_038702.1| (NM_013674) interferon regulatory f... 94 8e-20
Alignment gi|6680339|ref|NP_032346.1| (NM_008320) interferon consensus se... 82 5e-16
Alignment gi|31982243|ref|NP_032417.2| (NM_008391) interferon regulatory ... 80 2e-15
Alignment gi|6680467|ref|NP_032416.1| (NM_008390) interferon regulatory f... 77 1e-14
Alignment gi|6680474|ref|NP_032420.1| (NM_008394) interferon dependent po... 71 9e-13
>gi|8393627|ref|NP_058545.1| (NM_016849) interferon regulatory
factor 3 [Mus musculus]
Length = 419
Score = 286 bits (733), Expect = 8e-78
Identities = 151/234 (64%), Positives = 174/234 (73%), Gaps = 2/234 (0%)
Frame = +3
Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEA 464
M T KPRILPWL+SQL+ GQLEGVAWLDE TRFRIPWKHGLRQDAQ DFGIFQAWAEA
Sbjct: 1 METPKPRILPWLVSQLDLGQLEGVAWLDESRTRFRIPWKHGLRQDAQMADFGIFQAWAEA 60
Query: 465 SGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKDPHDPHKIYEFVTSGVGDFPEP 644
SGAYTPGKDKPD+ TWKRNFRSALNRKE LRLA D+SKDP+DPHK+YEFVT G DF
Sbjct: 61 SGAYTPGKDKPDVSTWKRNFRSALNRKEVLRLAADNSKDPYDPHKVYEFVTPGARDFVHL 120
Query: 645 DTSLDLSGRYSTSDTHEDSLDKLLSGMDLA--SDAGPPSLTLALEQPPQLSLSPSVDAPA 818
S D +G+ S + E +L KL G+ L D G L + + P Q SP+V+
Sbjct: 121 GASPDTNGKSSLPHSQE-NLPKLFDGLILGPLKDEGSSDLAI-VSDPSQQLPSPNVN--- 175
Query: 819 SCPNLGVRENPLKQLLANDDEWEFQVTVFYRGCQVFQQTVCSPGGLRLVGSQAE 980
+ N +ENPLKQLLA +++WEF+VT FYRG QVFQQT+ PGGLRLVGS A+
Sbjct: 176 NFLNPAPQENPLKQLLA-EEQWEFEVTAFYRGRQVFQQTLFCPGGLRLVGSTAD 228
>gi|6754368|ref|NP_036187.1| (NM_012057) interferon regulatory
factor 5 [Mus musculus]
Length = 497
Score = 107 bits (266), Expect = 1e-23
Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Frame = +3
Query: 282 PMGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWA 458
P ++ R+ PWL++Q+N Q G+ W++ F IPW+H R Q+ D IF+AWA
Sbjct: 9 PPPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSQDGDNTIFKAWA 68
Query: 459 EASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDF 635
+ +G YT G D+ D WK N R ALN+ +L D +D P P+KIYE ++G
Sbjct: 69 KETGKYTEGVDEADPAKWKANLRCALNKSRDFQLFYDGPRDMPPQPYKIYEVCSNGPAPT 128
Query: 636 PEPDTSLDLSGRYSTSDTHEDSLDKLLSGMDLASDA--GPPSLTLALEQ-----PPQLSL 794
T + G + E+ L ++L G+ + A GPP+ +L + PP L
Sbjct: 129 ESQPTDDYVLG--EEEEEEEEELQRMLPGLSITEPALPGPPNAPYSLPKEDTKWPPALQP 186
Query: 795 SPSVDAPASCPNL 833
+ P PNL
Sbjct: 187 PVGLGPPVPDPNL 199
>gi|8567364|ref|NP_058546.1| (NM_016850) interferon regulatory
factor 7 [Mus musculus]
Length = 457
Score = 101 bits (251), Expect = 7e-22
Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
Frame = +3
Query: 288 GTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFGIFQAWAEAS 467
G Q+ WL+ +++ GQ EG+ WL+E T FR+PWKH R+D +ED IF+AWA A
Sbjct: 6 GVQRVLFGDWLLGEVSSGQYEGLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVAR 65
Query: 468 GAYTP-----------GKDKPDLPTWKRNFRSALNRKEALRLAEDHSKDPHDPHKIYEF- 611
G + P ++ + WK NFR AL+ L +D+S DP DPHK+YE
Sbjct: 66 GRWPPSGVNLPPPEAEAAERRERRGWKTNFRCALHSTGRFILRQDNSGDPVDPHKVYELS 125
Query: 612 --VTSGVGDFPEPDTSLDLSGRYSTSDTHEDS-LDKLLSGMD-----LASDAG 746
+ S VG E + LS T S L + +G+ L+SDAG
Sbjct: 126 RELGSTVGPATENREEVSLSNALPTQGVSPGSFLARENAGLQTPSPLLSSDAG 178
>gi|8393630|ref|NP_058547.1| (NM_016851) interferon regulatory
factor 6 [Mus musculus]
Length = 467
Score = 100 bits (249), Expect = 1e-21
Identities = 76/253 (30%), Positives = 115/253 (45%), Gaps = 30/253 (11%)
Frame = +3
Query: 294 QKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFG-IFQAWAEASG 470
++ R+ PWL++Q++ G G+ WL RF+IPWKH R QQE+ IF+AWA +G
Sbjct: 6 RRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETG 65
Query: 471 AYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDFPEPD 647
Y G D PD WK R ALN+ L D +K+ P +P KIY+ V D P+P
Sbjct: 66 KYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCDIPQPQ 120
Query: 648 TSLDLSGRYSTSDTHEDSLDKLLSGMDLASDAGPPSLTLALEQP-PQLSLSPSVDAPASC 824
S+ G ST D D + + + + ++ P L+++ S APAS
Sbjct: 121 GSVINPG--STGSAPWDEKDNDVDEDEEEDELEQSQHHVPIQDTFPFLNINGSPMAPASV 178
Query: 825 PN-------------------LGVRENPLKQLLANDDEW-------EFQVTVFYRGCQVF 926
N + V + P++ ++ + W + + YRG +
Sbjct: 179 GNCSVGNCSPESVWPKTEPLEMEVPQAPIQPFYSSPELWISSLPMTDLDIKFQYRGKEYG 238
Query: 927 Q-QTVCSPGGLRL 962
Q TV +P G RL
Sbjct: 239 QTMTVSNPQGCRL 251
>gi|30017401|ref|NP_835184.1| (NM_178083) interferon regulatory
factor 6 [Mus musculus]
Length = 233
Score = 95.9 bits (237), Expect = 3e-20
Identities = 63/185 (34%), Positives = 91/185 (49%), Gaps = 3/185 (1%)
Frame = +3
Query: 294 QKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQEDFG-IFQAWAEASG 470
++ R+ PWL++Q++ G G+ WL RF+IPWKH R QQE+ IF+AWA +G
Sbjct: 6 RRVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETG 65
Query: 471 AYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD-PHDPHKIYEFVTSGVGDFPEPD 647
Y G D PD WK R ALN+ L D +K+ P +P KIY+ V D P+
Sbjct: 66 KYQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQ-----VCDIPQTQ 120
Query: 648 TSLDLSGRYSTSDTHEDSLDKLLSGMDLASDAGPPSLTLALEQP-PQLSLSPSVDAPASC 824
S+ G ST D D + + + + ++ P L+++ S APAS
Sbjct: 121 GSVINPG--STGSAPWDEKDNDVDEDEEEDELEQSQHHVPIQDTFPFLNINGSPMAPASV 178
Query: 825 PNLGV 839
N V
Sbjct: 179 GNCSV 183
>gi|7305519|ref|NP_038702.1| (NM_013674) interferon regulatory
factor 4; Sfpi1/PU.1 interaction partner [Mus musculus]
Length = 450
Score = 94.4 bits (233), Expect = 8e-20
Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +3
Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDA-QQEDFGIFQAWAEASGAYT 479
++ WLI Q++ G+ G+ W +E + FRIPWKH +QD ++ED +F+AWA G +
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSVFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 480 PGKDKPDLPTWKRNFRSALNRKEAL-RLAEDHSKDPHDPHKIYEFVTSG 623
G DKPD PTWK R ALN+ L E D DP+K+Y V G
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEG 131
>gi|6680339|ref|NP_032346.1| (NM_008320) interferon consensus
sequence binding protein 1; interferon consensus
sequence binding protein [Mus musculus]
Length = 424
Score = 81.6 bits (200), Expect = 5e-16
Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Frame = +3
Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWAEASGAYT 479
R+ WLI Q++ G+ W ++ T FRIPWKH +QD QE D IF+AWA G +
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 480 PGKDKPDLPTWKRNFRSALNRKEALRLAEDHSK-DPHDPHKIYEFV 614
G DK + TWK R ALN+ D S+ D +P+K+Y V
Sbjct: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIV 113
>gi|31982243|ref|NP_032417.2| (NM_008391) interferon regulatory
factor 2 [Mus musculus]
Length = 349
Score = 79.7 bits (195), Expect = 2e-15
Identities = 40/112 (35%), Positives = 61/112 (53%), Gaps = 2/112 (1%)
Frame = +3
Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWAE 461
M ++ R+ PWL Q+N + G+ WL++ F+IPW H R E D +F+ WA
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 462 ASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHS-KDPHDPHKIYEFV 614
+G + PG DKPD TWK NFR A+N + +D S K ++ ++Y +
Sbjct: 61 HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDRSIKKGNNAFRVYRML 112
>gi|6680467|ref|NP_032416.1| (NM_008390) interferon regulatory
factor 1 [Mus musculus]
Length = 329
Score = 77.0 bits (188), Expect = 1e-14
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +3
Query: 285 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQ-QEDFGIFQAWAE 461
M + R+ PWL Q+N Q+ G+ W+++ F+IPWKH + +D +F++WA
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 462 ASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHSKD 581
+G Y G+ +PD TWK NFR A+N + +D S++
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRN 100
>gi|6680474|ref|NP_032420.1| (NM_008394) interferon dependent
positive acting transcription factor 3 gamma [Mus
musculus]
Length = 399
Score = 70.9 bits (172), Expect = 9e-13
Identities = 38/109 (34%), Positives = 55/109 (49%), Gaps = 2/109 (1%)
Frame = +3
Query: 303 RILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQD-AQQEDFGIFQAWAEASGAYT 479
++ W++ Q+ G GV W D T FRIPWKH +QD + +D IF+AWA +
Sbjct: 11 KLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFKEKHK 70
Query: 480 PGKDKPDLPTWKRNFRSALNR-KEALRLAEDHSKDPHDPHKIYEFVTSG 623
G D WK R ALN+ E + E D +P+K+Y + +G
Sbjct: 71 DG-DIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAG 118
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15609559
Number of Sequences: 15330
Number of extensions: 418100
Number of successful extensions: 2645
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2466
length of query: 333
length of database: 7,155,815
effective HSP length: 47
effective length of query: 285
effective length of database: 6,435,305
effective search space: 1834061925
effective search space used: 1834061925
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)