Animal-Genome cDNA Clone 20030531/20030531C-0/20030531C-003018


Query

>20030531C-003018 (20030531C-003018) 20030531C-003018
AGACACGCCT GCAGACATTC CCTGGGAAAG GGCAAGCAGC AGCCAGGTGT
GAATGAGGCA GGATGAACTG GACAGGTCTG TACACCTTGC TCAGTGGCGT
GAACCGGCAT TCTACTGCCA TTGGCCGAGT ATGGCTCTCA GTCATCTTCA
TCTTCAGAAT CATGGTGCTG GTGGTGGCTG CAGAGAGTGT GTGGGGTGAT
GAGAAATCTT CCTTCATCTG CAACACCCTC CAGCCTGGCT GCAACAGCGT
CTGCTACGAC CACTTTTTCC CCATCTCCCA TGTGCGTCTG TGGTCTCTGC
AGCTCATCTT GGTTTCCACC CCAGCTCTTC TCGTGGCCAT GCACGTGGCT
CACCAGCAGC ACATAGAAAA GAAAATGCTG CGACTTGAGG GCCATGCCGA
CCCCCTCCAC CTGGAGGAGG TGAAGAGGCA CAAGGTCCAC ATCTCAGGGA
CGCTGTGGTG GACCTACGTC ATCAGCGTGG TCTTCCGGCT GCTGTTCGAG
GCCGCCTTCA TGTACGTCTT TTATCTGCTC TACCCTGGCT ATGCCATGGT
GCGGTTGGTG AAGTGTGAGG CCTACCCCTG CCCCAACACA GTGGACTGCT
TTGTGTCCCG CCCCACCGAG AAGACCGTCT TCACCGTCTT CATGCTGGCC
GCCTCCGGCA TCTGCATCAT CCTCAATGTG GCCGAGGTGG TGTACCTCAT
CTTCCGGGCC TGCGCCCGCC GAGCCCAGCG CCGCTCCAAT CCGCCCTCCC
GCAAGGGCTC GGGGGGCTTC GGCCACCGCC TCTCACCTGA ATACAAGCAG
AACGAGATCA ACAAGCTGCT GAGCGAGCAG GACGGCTCCC TGAAAGACAT
ACTGCGCCGC AGCCCCGGTA CCGGGGCTGG GCTGGCGGAA AAGAGCGACC
GCTGCTCAGC CTGCTGATGC CACAGACCAG GCAACCTCCC ATCCTGCCCC
TCCACCCTGG CCCCGGGGCT GCCCCTCCTT CTCCCCTGCC GGCTGGCTGA
GCAGGCCTCT GCCTGCGAGG GATTTGCTCC ATCAAAACCC TCCTTCCCTT
CTTCTAGG

Search to RefSeq (Human) database

Query= 20030531C-003018 (20030531C-003018) 20030531C-003018
         (1058 letters)

Database: RefSeq (Homo Sapiens/Amino Acid)
           19,244 sequences; 10,046,356 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|4504005|ref|NP_000157.1| (NM_000166) gap junction protein, b...   565  e-161
Alignment   gi|5803021|ref|NP_006774.1| (NM_006783) gap junction protein, b...   326  1e-89
Alignment   gi|6980948|ref|NP_003995.1| (NM_004004) gap junction protein, b...   325  2e-89
Alignment   gi|23397464|ref|NP_694944.1| (NM_153212) gap junction protein, ...   261  8e-70
Alignment   gi|10835079|ref|NP_005259.1| (NM_005268) gap junction protein, ...   256  1e-68
Alignment   gi|13128960|ref|NP_076872.1| (NM_024009) gap junction protein, ...   245  3e-65
Alignment   gi|22779877|ref|NP_068773.2| (NM_021954) gap junction protein, ...   217  1e-56
Alignment   gi|4885275|ref|NP_005258.1| (NM_005267) gap junction protein, a...   217  1e-56
Alignment   gi|4504001|ref|NP_000156.1| (NM_000165) connexin 43; gap juncti...   211  5e-55
Alignment   gi|4504003|ref|NP_002051.1| (NM_002060) connexin 37; gap juncti...   204  8e-53


>gi|4504005|ref|NP_000157.1| (NM_000166) gap junction protein, beta
           1, 32kDa (connexin 32, Charcot-Marie-Tooth neuropathy,
           X-linked); Gap junction protein, beta-1, 32kD (connexin
           32); gap junction protein, beta 1, 32kD (connexin 32,
           Charcot-Marie-Tooth neuropathy, X-linked) [Homo sapiens]
          Length = 283

 Score =  565 bits (1456), Expect = e-161
 Identities = 277/284 (97%), Positives = 278/284 (97%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1   MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
           NSVCYD FFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61  NSVCYDQFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120

Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
           KRHKVHISGTLWWTYVISVVFRLLFEA FMYVFYLLYPGYAMVRLVKC+ YPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCDVYPCPNTVDCF 180

Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 782
           VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239

Query: 783 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 914
           SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283



>gi|5803021|ref|NP_006774.1| (NM_006783) gap junction protein, beta
           6 (connexin 30) [Homo sapiens]
          Length = 261

 Score =  326 bits (836), Expect = 1e-89
 Identities = 151/256 (58%), Positives = 198/256 (76%), Gaps = 1/256 (0%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           M+W  L+T + GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+  F+CNTLQPGC
Sbjct: 1   MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 419
            +VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H   +K  R E   D   +E+
Sbjct: 61  KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETTRKFRRGEKRNDFKDIED 120

Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
           +K+HKV I G+LWWTY  S+ FR++FEAAFMYVFY LY GY +  ++KC   PCPN VDC
Sbjct: 121 IKKHKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180

Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 779
           F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C RR++R     +        H
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKNHP-----NHA 235

Query: 780 LSPEYKQNEINKLLSE 827
           L  E KQNE+N+L+S+
Sbjct: 236 LK-ESKQNEMNELISD 250



>gi|6980948|ref|NP_003995.1| (NM_004004) gap junction protein, beta
           2, 26kDa (connexin 26); gap junction protein, beta 2,
           26kD (connexin 26) [Homo sapiens]
          Length = 226

 Score =  325 bits (834), Expect = 2e-89
 Identities = 145/224 (64%), Positives = 191/224 (84%), Gaps = 1/224 (0%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           M+W  L T+L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1   MDWGTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 419
            +VCYDH+FPISH+RLW+LQLI VS+PALLVAMHVA+++H +K K ++ E  ++   +EE
Sbjct: 61  KNVCYDHYFPISHIRLWALQLIFVSSPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIEE 120

Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
           +K  KV I G+LWWTY  S+ FR++FEAAFMYVFY++Y G++M RLVKC A+PCPNTVDC
Sbjct: 121 IKTQKVRIEGSLWWTYTSSIFFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWPCPNTVDC 180

Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 731
           FVSRPTEKTVFTVFM+A SGICI+LNV E+ YL+ R C+ ++++
Sbjct: 181 FVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRYCSGKSKK 224



>gi|23397464|ref|NP_694944.1| (NM_153212) gap junction protein, beta
           4; connexin 30.3 [Homo sapiens]
          Length = 266

 Score =  261 bits (666), Expect = 8e-70
 Identities = 117/217 (53%), Positives = 159/217 (72%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           MNW  L  LLSGVN++ST + R+WLSV+FIFR++V VVAAE VW DE+  F+CNT QPGC
Sbjct: 1   MNWAFLQGLLSGVNKYSTVLSRIWLSVVFIFRVLVYVVAAEEVWDDEQKDFVCNTKQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
            +VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++  E+K     G   P   + +
Sbjct: 61  PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREERERKHHLKHGPNAPSLYDNL 120

Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
            + +    G LWWTY++S++F+   +A F+Y+F+ LY  Y M R+V C   PCP+TVDC+
Sbjct: 121 SKKR----GGLWWTYLLSLIFKAAVDAGFLYIFHRLYKDYDMPRVVACSVEPCPHTVDCY 176

Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC 713
           +SRPTEK VFT FM+  + ICI+LN++EV YL+ + C
Sbjct: 177 ISRPTEKKVFTYFMVTTAAICILLNLSEVFYLVGKRC 213



>gi|10835079|ref|NP_005259.1| (NM_005268) gap junction protein, beta
           5 (connexin 31.1) [Homo sapiens]
          Length = 273

 Score =  256 bits (655), Expect = 1e-68
 Identities = 120/228 (52%), Positives = 166/228 (72%), Gaps = 6/228 (2%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           MNW+    LLSGVN++STA GR+WLS++FIFR++V +V AE VW D+   F CNT QPGC
Sbjct: 1   MNWSIFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVWSDDHKDFDCNTRQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 419
           ++VC+D FFP+SHVRLW+LQLILV+ P+LLV MHVA+++  EK+     G ++  L+L
Sbjct: 61  SNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREVQEKRHREAHGENSGRLYLNP 120

Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
            K+      G LWWTYV S+VF+   + AF+YVF+  YP Y +  +VKC A PCPN VDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVFKASVDIAFLYVFHSFYPKYILPPVVKCHADPCPNIVDC 175

Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC-----ARRAQ 728
           F+S+P+EK +FT+FM+A + ICI+LN+ E++YL+ + C     AR+AQ
Sbjct: 176 FISKPSEKNIFTLFMVATAAICILLNLVELIYLVSKRCHECLAARKAQ 223



>gi|13128960|ref|NP_076872.1| (NM_024009) gap junction protein, beta
           3, 31kDa (connexin 31); gap junction protein, beta 3,
           31kD (connexin 31) [Homo sapiens]
          Length = 270

 Score =  245 bits (626), Expect = 3e-65
 Identities = 112/215 (52%), Positives = 158/215 (73%), Gaps = 2/215 (0%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           M+W  L  LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+  F CNT QPGC
Sbjct: 1   MDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTKQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 419
            +VCYD++FPIS++RLW+LQLI V+ P+LLV +HVA+++  E++  +  G     L+
Sbjct: 61  TNVCYDNYFPISNIRLWALQLIFVTCPSLLVILHVAYREERERRHRQKHGDQCAKLYDNA 120

Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKC-EAYPCPNTVD 596
            K+H     G LWWTY+ S++F+L+ E  F+Y+ + L+ G+ M RLV+C    PCPN VD
Sbjct: 121 GKKH-----GGLWWTYLFSLIFKLIIEFLFLYLLHTLWHGFNMPRLVQCANVAPCPNIVD 175

Query: 597 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLI 701
           C+++RPTEK +FT FM+ AS +CI+L + E+ YLI
Sbjct: 176 CYIARPTEKKIFTYFMVGASAVCIVLTICELCYLI 210



>gi|22779877|ref|NP_068773.2| (NM_021954) gap junction protein,
           alpha 3, 46kDa (connexin 46); gap junction protein,
           alpha 3, 46kD (connexin 46) [Homo sapiens]
          Length = 435

 Score =  217 bits (552), Expect = 1e-56
 Identities = 110/248 (44%), Positives = 152/248 (60%), Gaps = 14/248 (5%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W+ L  LL     HST IG+VWL+V+FIFRI+VL  AAE VWGDE+S F CNT QPGC
Sbjct: 3   DWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEDVWGDEQSDFTCNTQQPGCE 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEVK 425
           +VCYD  FPISH+R W+LQ+I VSTP L+   HV H   +E+K    E   + L  E
Sbjct: 63  NVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKERE-EEEQLKRESPS 121

Query: 426 --------------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVK 563
                         R +V ++G L  TYV +++F+ LFE  F+   Y LY G+ +  L +
Sbjct: 122 PKEPPQDNPSSRDDRGRVRMAGALLRTYVFNIIFKTLFEVGFIAGQYFLY-GFELKPLYR 180

Query: 564 CEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNP 743
           C+ +PCPNTVDCF+SRPTEKT+F +FMLA +   ++LN+ E+ +L ++   +    R  P
Sbjct: 181 CDRWPCPNTVDCFISRPTEKTIFIIFMLAVACASLLLNMLEIYHLGWKKLKQGVTSRLGP 240

Query: 744 PSRKGSGG 767
            + +   G
Sbjct: 241 DASEAPLG 248



>gi|4885275|ref|NP_005258.1| (NM_005267) gap junction protein, alpha
           8, 50kDa (connexin 50); gap junction membrane channel
           protein alpha-8; connexin 50; Gap junction membrane
           channel protein alpha-8 (connexin 50); gap junction
           protein, alpha 8, 50kD (connexin 50) [Homo sapiens]
          Length = 432

 Score =  217 bits (552), Expect = 1e-56
 Identities = 108/241 (44%), Positives = 148/241 (60%), Gaps = 14/241 (5%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W+ L  +L  VN HST IGRVWL+V+FIFRI++L  AAE VWGDE+S F+CNT QPGC
Sbjct: 3   DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKK----------MLRLEGH 395
           +VCYD  FPISH+RLW LQ+I VSTP+L+   H  H   +E+K               G
Sbjct: 63  NVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHYVRMEEKRKSRDEELGQQAGTNGG 122

Query: 396 ADPLHLEEVK----RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVK 563
            D   +++        K  + GTL  TY+  ++F+ LFE  F+   Y LY G+ ++ L +
Sbjct: 123 PDQGSVKKSSGSKGTKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY-GFRILPLYR 181

Query: 564 CEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNP 743
           C  +PCPN VDCFVSRPTEKT+F +FML+ + + + LNV E+ +L  +      +R
Sbjct: 182 CSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVSLFLNVMELSHLGLKGIRSALKRPVEQ 241

Query: 744 P 746
           P
Sbjct: 242 P 242



>gi|4504001|ref|NP_000156.1| (NM_000165) connexin 43; gap junction
           protein, alpha 1, 43kD; oculodentodigital dysplasia
           (syndactyly type III) [Homo sapiens]
          Length = 382

 Score =  211 bits (538), Expect = 5e-55
 Identities = 107/245 (43%), Positives = 155/245 (62%), Gaps = 19/245 (7%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W+ L  LL  V  +STA G+VWLSV+FIFRI++L  A ES WGDE+S+F CNT QPGC
Sbjct: 3   DWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPGCE 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLE---------GHA 398
           +VCYD  FPISHVR W LQ+I VS P LL   HV +    E+K+ + E         G
Sbjct: 63  NVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDGVN 122

Query: 399 DPLHLEEV----------KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
             +HL+++          +  KV + G L  TY+IS++F+ +FE AF+ + + +Y G+++
Sbjct: 123 VDMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSIFEVAFLLIQWYIY-GFSL 181

Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
             +  C+  PCP+ VDCF+SRPTEKT+F +FML  S + + LN+ E+ Y+ F+    R +
Sbjct: 182 SAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVSLALNIIELFYVFFKGVKDRVK 241

Query: 729 RRSNP 743
            +S+P
Sbjct: 242 GKSDP 246



>gi|4504003|ref|NP_002051.1| (NM_002060) connexin 37; gap junction
           protein, alpha 4, 37kD (connexin 37); gap junction
           protein, alpha 4, 37kD [Homo sapiens]
          Length = 333

 Score =  204 bits (519), Expect = 8e-53
 Identities = 109/253 (43%), Positives = 154/253 (60%), Gaps = 21/253 (8%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W  L  LL  V  HST +G++WL+V+FIFRI++L +A ESVWGDE+S F CNT QPGC
Sbjct: 3   DWGFLEKLLDQVREHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG--HADPLHLEE 419
           +VCYD  FPISH+R W LQ + VSTP L+   HV +    E+++ + EG   A P    +
Sbjct: 63  NVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLAQKEGELRALPAKDPQ 122

Query: 420 VKR-----------------HKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
           V+R                  ++ I   L  TYV SV+ + + EA F+Y  + LY G+ M
Sbjct: 123 VERALAGIELQMAKISVAEDGRLRIPRALMGTYVASVLCKSVLEAGFLYGQWRLY-GWTM 181

Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR--R 722
             +  C+  PCP  VDCFVSRPTEKT+F +FML    I ++LN+ E+V+L+ R  +R  R
Sbjct: 182 EPVFVCQRAPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLNLLELVHLLCRCLSRGMR 241

Query: 723 AQRRSNPPSRKGS 761
           A++  + P  +G+
Sbjct: 242 ARQGQDAPPTQGT 254


  Database: RefSeq (Homo Sapiens/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 10,046,356
  Number of sequences in database:  19,244

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22156462
Number of Sequences: 19244
Number of extensions: 561491
Number of successful extensions: 2494
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 2063
length of query: 352
length of database: 10,046,356
effective HSP length: 47
effective length of query: 305
effective length of database: 9,141,888
effective search space: 2788275840
effective search space used: 2788275840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Search to RefSeq (Mouse) database

Query= 20030531C-003018 (20030531C-003018) 20030531C-003018
         (1058 letters)

Database: RefSeq (Mus Musculus/Amino Acid)
           15,330 sequences; 7,155,815 total letters

Searching..................................................done

                                                                               Score     E
            Sequences producing significant alignments:                        (bits)  Value

Alignment   gi|22165406|ref|NP_032150.2| (NM_008124) gap junction membrane ...   569  e-163
Alignment   gi|6680017|ref|NP_032154.1| (NM_008128) gap junction membrane c...   325  3e-89
Alignment   gi|6680011|ref|NP_032151.1| (NM_008125) gap junction membrane c...   319  1e-87
Alignment   gi|6680015|ref|NP_032153.1| (NM_008127) gap junction membrane c...   264  6e-71
Alignment   gi|6753996|ref|NP_034421.1| (NM_010291) gap junction membrane c...   257  6e-69
Alignment   gi|6680013|ref|NP_032152.1| (NM_008126) gap junction membrane c...   257  8e-69
Alignment   gi|8393440|ref|NP_058671.1| (NM_016975) gap junction membrane c...   219  1e-57
Alignment   gi|6680009|ref|NP_032149.1| (NM_008123) gap junction membrane c...   216  1e-56
Alignment   gi|6753992|ref|NP_034418.1| (NM_010288) gap junction membrane c...   212  2e-55
Alignment   gi|6680003|ref|NP_032146.1| (NM_008120) gap junction membrane c...   212  3e-55


>gi|22165406|ref|NP_032150.2| (NM_008124) gap junction membrane
           channel protein beta 1; connexin 32; connexin-32 [Mus
           musculus]
          Length = 283

 Score =  569 bits (1467), Expect = e-163
 Identities = 279/284 (98%), Positives = 280/284 (98%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1   MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
           NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61  NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120

Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
           KRHKVHISGTLWWTYVISVVFRLLFEA FMYVFYLLYPGYAMVRLVKCEA+PCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCEAFPCPNTVDCF 180

Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 782
           VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239

Query: 783 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 914
           SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283



>gi|6680017|ref|NP_032154.1| (NM_008128) gap junction membrane
           channel protein beta 6; Connexin 30; DNA segment, Chr
           14, Brigham & Women's Genetics 0506 expressed [Mus
           musculus]
          Length = 261

 Score =  325 bits (832), Expect = 3e-89
 Identities = 154/260 (59%), Positives = 202/260 (77%), Gaps = 5/260 (1%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           M+W  L+T++ GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+  F+CNTLQPGC
Sbjct: 1   MDWGTLHTVIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 419
            +VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H   +K +R E   +   LE+
Sbjct: 61  KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETARKFIRGEKRNEFKDLED 120

Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
           +KR KV I G+LWWTY  S+ FR++FEAAFMYVFY LY GY +  ++KC   PCPN VDC
Sbjct: 121 IKRQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180

Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR----RSNPPSRKGSGG 767
           F+SRPTEKTVFTVFM++AS IC++LNVAE+ YL+ + C RR++R    R++P
Sbjct: 181 FISRPTEKTVFTVFMISASVICMLLNVAELCYLLLKLCFRRSKRTQAQRNHP-------- 232

Query: 768 FGHRLSPEYKQNEINKLLSE 827
             H L  E KQNE+N+L+S+
Sbjct: 233 -NHALK-ESKQNEMNELISD 250



>gi|6680011|ref|NP_032151.1| (NM_008125) gap junction membrane
           channel protein beta 2; connexin 26 [Mus musculus]
          Length = 226

 Score =  319 bits (818), Expect = 1e-87
 Identities = 142/224 (63%), Positives = 187/224 (83%), Gaps = 1/224 (0%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           M+W  L ++L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1   MDWGTLQSILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 419
            +VCYDH FPISH+RLW+LQLI+VSTPALLVAMHVA+++H +K K ++ E   +   +EE
Sbjct: 61  KNVCYDHHFPISHIRLWALQLIMVSTPALLVAMHVAYRRHEKKRKFMKGEIKNEFKDIEE 120

Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
           +K  KV I G+LWWTY  S+ FR++FEA FMYVFY++Y G+ M RLVKC A+PCPNTVDC
Sbjct: 121 IKTQKVRIEGSLWWTYTTSIFFRVIFEAVFMYVFYIMYNGFFMQRLVKCNAWPCPNTVDC 180

Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 731
           F+SRPTEKTVFTVFM++ SGICI+LN+ E+ YL  R C+ +++R
Sbjct: 181 FISRPTEKTVFTVFMISVSGICILLNITELCYLFVRYCSGKSKR 224



>gi|6680015|ref|NP_032153.1| (NM_008127) gap junction membrane
           channel protein beta 4; connexin 30.3 [Mus musculus]
          Length = 266

 Score =  264 bits (674), Expect = 6e-71
 Identities = 119/231 (51%), Positives = 166/231 (71%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           MNW  L  +LSGVN++STA+GR+WLSV+FIFR++V VVAAE VW D++  FICNT QPGC
Sbjct: 1   MNWGFLQGILSGVNKYSTALGRIWLSVVFIFRVLVYVVAAEEVWDDDQKDFICNTKQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
            +VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++  E+K     G   P     +
Sbjct: 61  PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREERERKHRLKHGPNAPALYSNL 120

Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
            + +    G LWWTY++S++F+   ++ F+Y+F+ +Y  Y M R+V C   PCP+TVDC+
Sbjct: 121 SKKR----GGLWWTYLLSLIFKAAVDSGFLYIFHCIYKDYDMPRVVACSVTPCPHTVDCY 176

Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRK 755
           ++RPTEK VFT FM+  + ICI+LN++EVVYL+ + C    + R    SR+
Sbjct: 177 IARPTEKKVFTYFMVVTAAICILLNLSEVVYLVGKRCMEVFRPRRRKASRR 227



>gi|6753996|ref|NP_034421.1| (NM_010291) gap junction membrane
           channel protein beta 5; connexin 31.1 [Mus musculus]
          Length = 271

 Score =  257 bits (657), Expect = 6e-69
 Identities = 117/227 (51%), Positives = 159/227 (69%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           MNW+    LLSGVN++STA GR+WLS++F+FR++V +V AE VWGD++  F CNT QPGC
Sbjct: 1   MNWSVFEGLLSGVNKYSTAFGRIWLSLVFVFRVLVYLVTAERVWGDDQKDFDCNTRQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
            +VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++  EKK     G
Sbjct: 61  TNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYRKAREKKYQEKIGEGYLYPNPGK 120

Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
           KR      G LWWTYV S+ F+   +  F+Y+F+  YP Y +  +VKC A PCPNTVDCF
Sbjct: 121 KR------GGLWWTYVFSLSFKATIDIIFLYLFHAFYPRYTLPSMVKCHAEPCPNTVDCF 174

Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNP 743
           +++P+EK +F VFM+  + ICI+LN+ E++YL+ + C+  AQ R  P
Sbjct: 175 IAKPSEKNIFIVFMVVTAVICILLNLVELIYLVIKRCSECAQLRRPP 221



>gi|6680013|ref|NP_032152.1| (NM_008126) gap junction membrane
           channel protein beta 3; connexin 31; DNA segment, Chr 4,
           Wayne State University 144, expressed [Mus musculus]
          Length = 270

 Score =  257 bits (656), Expect = 8e-69
 Identities = 119/221 (53%), Positives = 162/221 (72%), Gaps = 2/221 (0%)
 Frame = +3

Query: 63  MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
           M+W  L  LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+  F CNT QPGC
Sbjct: 1   MDWKKLQDLLSGVNQYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTRQPGC 60

Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 419
            +VCYD+FFPIS++RLW+LQLI V+ P++LV +HVA+++  E+K  +  G     L+
Sbjct: 61  TNVCYDNFFPISNIRLWALQLIFVTCPSMLVILHVAYREERERKHRQKHGEQCAKLYSHP 120

Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEA-YPCPNTVD 596
            K+H     G LWWTY+ S++F+L+ E  F+YV + L+ G+ M RLV+C +  PCPNTVD
Sbjct: 121 GKKH-----GGLWWTYLFSLIFKLIIELVFLYVLHTLWHGFTMPRLVQCASIVPCPNTVD 175

Query: 597 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR 719
           C+++RPTEK VFT FM+ AS +CIIL + E+ YLIF    R
Sbjct: 176 CYIARPTEKKVFTYFMVGASAVCIILTICEICYLIFHRIMR 216



>gi|8393440|ref|NP_058671.1| (NM_016975) gap junction membrane
           channel protein alpha 3; connexin 46; alpha 3 connexin
           [Mus musculus]
          Length = 417

 Score =  219 bits (559), Expect = 1e-57
 Identities = 111/245 (45%), Positives = 152/245 (61%), Gaps = 19/245 (7%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W+ L  LL     HST IG+VWL+V+FIFRI+VL  AAE VWGDE+S F CNT QPGC
Sbjct: 3   DWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPGCE 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKK-------MLRLEGHADP 404
           +VCYD  FPISH+R W+LQ+I VSTP L+   HV H   +E+K       +LR +
Sbjct: 63  NVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEELLRRDNPQHG 122

Query: 405 LHLEEVK------------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
              E ++            R KV I+G L  TYV +++F+ LFE  F+   Y LY G+ +
Sbjct: 123 RGREPMRTGSPRDPPLRDDRGKVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLY-GFQL 181

Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
             L +C+ +PCPNTVDCF+SRPTEKT+F +FMLA +   ++LN+ E+ +L ++   +
Sbjct: 182 QPLYRCDRWPCPNTVDCFISRPTEKTIFVIFMLAVACASLVLNMLEIYHLGWKKLKQGVT 241

Query: 729 RRSNP 743
              NP
Sbjct: 242 NHFNP 246



>gi|6680009|ref|NP_032149.1| (NM_008123) gap junction membrane
           channel protein alpha 8; connexin 50; alpha 8 connexin;
           lens opacity 10 [Mus musculus]
          Length = 440

 Score =  216 bits (551), Expect = 1e-56
 Identities = 119/299 (39%), Positives = 167/299 (55%), Gaps = 22/299 (7%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W+ L  +L  VN HST IGRVWL+V+FIFRI++L  AAE VWGDE+S F+CNT QPGC
Sbjct: 3   DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLE------------ 389
           +VCYD  FPISH+RLW LQ+I VSTP+L+   H  H   +E+K    E
Sbjct: 63  NVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHHVRMEEKRKDREAEELCQQSRSNG 122

Query: 390 GHADPLHLEEVK----------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPG 539
           G   P+  ++              K  + GTL  TYV  ++F+ LFE  F+   Y LY G
Sbjct: 123 GERVPIAPDQASIRKSSSSSKGTKKFRLEGTLLRTYVCHIIFKTLFEVGFIVGHYFLY-G 181

Query: 540 YAMVRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR 719
           + ++ L +C  +PCPN VDCFVSRPTEKT+F +FML+ + + + LN+ E+ +L  +
Sbjct: 182 FRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVAFVSLFLNIMEMSHLGMKGIRS 241

Query: 720 RAQRRSNPPSRKGSGGFGHRLSPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKS 896
             +R    P  + +    H ++    Q      L E++   K +    P T  G+ E S
Sbjct: 242 AFKRPVEQPLGEIAEKSLHSIAVSSIQKAKGYQLLEEE---KIVSHYFPLTEVGMVETS 297



>gi|6753992|ref|NP_034418.1| (NM_010288) gap junction membrane
           channel protein alpha 1; connexin 43; alpha 1 connexin
           [Mus musculus]
          Length = 382

 Score =  212 bits (540), Expect = 2e-55
 Identities = 108/245 (44%), Positives = 155/245 (63%), Gaps = 19/245 (7%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W+ L  LL  V  +STA G+VWLSV+FIFRI++L  A ES WGDE+S+F CNT QPGC
Sbjct: 3   DWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPGCE 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLE---------GHA 398
           +VCYD  FPISHVR W LQ+I VS P LL   HV +    E+K+ + E         G
Sbjct: 63  NVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDGVN 122

Query: 399 DPLHLEEV----------KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
             +HL+++          +  KV + G L  TY+IS++F+ +FE AF+ + + +Y G+++
Sbjct: 123 VEMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSVFEVAFLLIQWYIY-GFSL 181

Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
             +  C+  PCP+ VDCF+SRPTEKT+F +FML  S + + LN+ E+ Y+ F+    R +
Sbjct: 182 SAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVSLALNIIELFYVFFKGVKDRVK 241

Query: 729 RRSNP 743
            RS+P
Sbjct: 242 GRSDP 246



>gi|6680003|ref|NP_032146.1| (NM_008120) gap junction membrane
           channel protein alpha 4; connexin 37 [Mus musculus]
          Length = 333

 Score =  212 bits (539), Expect = 3e-55
 Identities = 107/252 (42%), Positives = 154/252 (60%), Gaps = 19/252 (7%)
 Frame = +3

Query: 66  NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
           +W  L  LL  V  HST +G++WL+V+FIFRI++L +A ESVWGDE+S F CNT QPGC
Sbjct: 3   DWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 62

Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH-----ADPLH 410
           +VCYD  FPISH+R W LQ + VSTP L+   HV +    E+++ + EG      +  LH
Sbjct: 63  NVCYDQAFPISHIRYWVLQFLFVSTPTLIYLGHVIYLSRREERLRQKEGELRALPSKDLH 122

Query: 411 LEE--------------VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
           +E                +  ++ I G L  TYV+SV+ + + EA F+Y  + LY G+ M
Sbjct: 123 VERALAAIEHQMAKISVAEDGRLRIRGALMGTYVVSVLCKSVLEAGFLYGQWRLY-GWTM 181

Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
             +  C+  PCP+ VDC+VSRPTEKT+F +FML    I ++LN+ E+V+L+ R  +R  +
Sbjct: 182 EPVFVCQRAPCPHIVDCYVSRPTEKTIFIIFMLVVGVISLVLNLLELVHLLCRCVSREIK 241

Query: 729 RRSNPPSRKGSG 764
            R +  +R   G
Sbjct: 242 ARRDHDARPAQG 253


  Database: RefSeq (Mus Musculus/Amino Acid)
    Posted date:  Jul 1, 2003  6:07 AM
  Number of letters in database: 7,155,815
  Number of sequences in database:  15,330

Lambda     K      H
   0.318    0.135    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15590819
Number of Sequences: 15330
Number of extensions: 383967
Number of successful extensions: 1727
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of query: 352
length of database: 7,155,815
effective HSP length: 47
effective length of query: 305
effective length of database: 6,435,305
effective search space: 1962768025
effective search space used: 1962768025
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)