Search to RefSeq (Human) database
Query= 20030531C-003018 (20030531C-003018) 20030531C-003018
(1058 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|4504005|ref|NP_000157.1| (NM_000166) gap junction protein, b... 565 e-161
Alignment gi|5803021|ref|NP_006774.1| (NM_006783) gap junction protein, b... 326 1e-89
Alignment gi|6980948|ref|NP_003995.1| (NM_004004) gap junction protein, b... 325 2e-89
Alignment gi|23397464|ref|NP_694944.1| (NM_153212) gap junction protein, ... 261 8e-70
Alignment gi|10835079|ref|NP_005259.1| (NM_005268) gap junction protein, ... 256 1e-68
Alignment gi|13128960|ref|NP_076872.1| (NM_024009) gap junction protein, ... 245 3e-65
Alignment gi|22779877|ref|NP_068773.2| (NM_021954) gap junction protein, ... 217 1e-56
Alignment gi|4885275|ref|NP_005258.1| (NM_005267) gap junction protein, a... 217 1e-56
Alignment gi|4504001|ref|NP_000156.1| (NM_000165) connexin 43; gap juncti... 211 5e-55
Alignment gi|4504003|ref|NP_002051.1| (NM_002060) connexin 37; gap juncti... 204 8e-53
>gi|4504005|ref|NP_000157.1| (NM_000166) gap junction protein, beta
1, 32kDa (connexin 32, Charcot-Marie-Tooth neuropathy,
X-linked); Gap junction protein, beta-1, 32kD (connexin
32); gap junction protein, beta 1, 32kD (connexin 32,
Charcot-Marie-Tooth neuropathy, X-linked) [Homo sapiens]
Length = 283
Score = 565 bits (1456), Expect = e-161
Identities = 277/284 (97%), Positives = 278/284 (97%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
NSVCYD FFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDQFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
KRHKVHISGTLWWTYVISVVFRLLFEA FMYVFYLLYPGYAMVRLVKC+ YPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCDVYPCPNTVDCF 180
Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 782
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239
Query: 783 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 914
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283
>gi|5803021|ref|NP_006774.1| (NM_006783) gap junction protein, beta
6 (connexin 30) [Homo sapiens]
Length = 261
Score = 326 bits (836), Expect = 1e-89
Identities = 151/256 (58%), Positives = 198/256 (76%), Gaps = 1/256 (0%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
M+W L+T + GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 419
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K R E D +E+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETTRKFRRGEKRNDFKDIED 120
Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
+K+HKV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKKHKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 779
F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C RR++R + H
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKNHP-----NHA 235
Query: 780 LSPEYKQNEINKLLSE 827
L E KQNE+N+L+S+
Sbjct: 236 LK-ESKQNEMNELISD 250
>gi|6980948|ref|NP_003995.1| (NM_004004) gap junction protein, beta
2, 26kDa (connexin 26); gap junction protein, beta 2,
26kD (connexin 26) [Homo sapiens]
Length = 226
Score = 325 bits (834), Expect = 2e-89
Identities = 145/224 (64%), Positives = 191/224 (84%), Gaps = 1/224 (0%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
M+W L T+L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1 MDWGTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 419
+VCYDH+FPISH+RLW+LQLI VS+PALLVAMHVA+++H +K K ++ E ++ +EE
Sbjct: 61 KNVCYDHYFPISHIRLWALQLIFVSSPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIEE 120
Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
+K KV I G+LWWTY S+ FR++FEAAFMYVFY++Y G++M RLVKC A+PCPNTVDC
Sbjct: 121 IKTQKVRIEGSLWWTYTSSIFFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWPCPNTVDC 180
Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 731
FVSRPTEKTVFTVFM+A SGICI+LNV E+ YL+ R C+ ++++
Sbjct: 181 FVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRYCSGKSKK 224
>gi|23397464|ref|NP_694944.1| (NM_153212) gap junction protein, beta
4; connexin 30.3 [Homo sapiens]
Length = 266
Score = 261 bits (666), Expect = 8e-70
Identities = 117/217 (53%), Positives = 159/217 (72%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
MNW L LLSGVN++ST + R+WLSV+FIFR++V VVAAE VW DE+ F+CNT QPGC
Sbjct: 1 MNWAFLQGLLSGVNKYSTVLSRIWLSVVFIFRVLVYVVAAEEVWDDEQKDFVCNTKQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ E+K G P + +
Sbjct: 61 PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREERERKHHLKHGPNAPSLYDNL 120
Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
+ + G LWWTY++S++F+ +A F+Y+F+ LY Y M R+V C PCP+TVDC+
Sbjct: 121 SKKR----GGLWWTYLLSLIFKAAVDAGFLYIFHRLYKDYDMPRVVACSVEPCPHTVDCY 176
Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC 713
+SRPTEK VFT FM+ + ICI+LN++EV YL+ + C
Sbjct: 177 ISRPTEKKVFTYFMVTTAAICILLNLSEVFYLVGKRC 213
>gi|10835079|ref|NP_005259.1| (NM_005268) gap junction protein, beta
5 (connexin 31.1) [Homo sapiens]
Length = 273
Score = 256 bits (655), Expect = 1e-68
Identities = 120/228 (52%), Positives = 166/228 (72%), Gaps = 6/228 (2%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
MNW+ LLSGVN++STA GR+WLS++FIFR++V +V AE VW D+ F CNT QPGC
Sbjct: 1 MNWSIFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVWSDDHKDFDCNTRQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 419
++VC+D FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ EK+ G ++ L+L
Sbjct: 61 SNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREVQEKRHREAHGENSGRLYLNP 120
Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
K+ G LWWTYV S+VF+ + AF+YVF+ YP Y + +VKC A PCPN VDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVFKASVDIAFLYVFHSFYPKYILPPVVKCHADPCPNIVDC 175
Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC-----ARRAQ 728
F+S+P+EK +FT+FM+A + ICI+LN+ E++YL+ + C AR+AQ
Sbjct: 176 FISKPSEKNIFTLFMVATAAICILLNLVELIYLVSKRCHECLAARKAQ 223
>gi|13128960|ref|NP_076872.1| (NM_024009) gap junction protein, beta
3, 31kDa (connexin 31); gap junction protein, beta 3,
31kD (connexin 31) [Homo sapiens]
Length = 270
Score = 245 bits (626), Expect = 3e-65
Identities = 112/215 (52%), Positives = 158/215 (73%), Gaps = 2/215 (0%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
M+W L LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+ F CNT QPGC
Sbjct: 1 MDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTKQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 419
+VCYD++FPIS++RLW+LQLI V+ P+LLV +HVA+++ E++ + G L+
Sbjct: 61 TNVCYDNYFPISNIRLWALQLIFVTCPSLLVILHVAYREERERRHRQKHGDQCAKLYDNA 120
Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKC-EAYPCPNTVD 596
K+H G LWWTY+ S++F+L+ E F+Y+ + L+ G+ M RLV+C PCPN VD
Sbjct: 121 GKKH-----GGLWWTYLFSLIFKLIIEFLFLYLLHTLWHGFNMPRLVQCANVAPCPNIVD 175
Query: 597 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLI 701
C+++RPTEK +FT FM+ AS +CI+L + E+ YLI
Sbjct: 176 CYIARPTEKKIFTYFMVGASAVCIVLTICELCYLI 210
>gi|22779877|ref|NP_068773.2| (NM_021954) gap junction protein,
alpha 3, 46kDa (connexin 46); gap junction protein,
alpha 3, 46kD (connexin 46) [Homo sapiens]
Length = 435
Score = 217 bits (552), Expect = 1e-56
Identities = 110/248 (44%), Positives = 152/248 (60%), Gaps = 14/248 (5%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W+ L LL HST IG+VWL+V+FIFRI+VL AAE VWGDE+S F CNT QPGC
Sbjct: 3 DWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEDVWGDEQSDFTCNTQQPGCE 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEVK 425
+VCYD FPISH+R W+LQ+I VSTP L+ HV H +E+K E + L E
Sbjct: 63 NVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKERE-EEEQLKRESPS 121
Query: 426 --------------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVK 563
R +V ++G L TYV +++F+ LFE F+ Y LY G+ + L +
Sbjct: 122 PKEPPQDNPSSRDDRGRVRMAGALLRTYVFNIIFKTLFEVGFIAGQYFLY-GFELKPLYR 180
Query: 564 CEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNP 743
C+ +PCPNTVDCF+SRPTEKT+F +FMLA + ++LN+ E+ +L ++ + R P
Sbjct: 181 CDRWPCPNTVDCFISRPTEKTIFIIFMLAVACASLLLNMLEIYHLGWKKLKQGVTSRLGP 240
Query: 744 PSRKGSGG 767
+ + G
Sbjct: 241 DASEAPLG 248
>gi|4885275|ref|NP_005258.1| (NM_005267) gap junction protein, alpha
8, 50kDa (connexin 50); gap junction membrane channel
protein alpha-8; connexin 50; Gap junction membrane
channel protein alpha-8 (connexin 50); gap junction
protein, alpha 8, 50kD (connexin 50) [Homo sapiens]
Length = 432
Score = 217 bits (552), Expect = 1e-56
Identities = 108/241 (44%), Positives = 148/241 (60%), Gaps = 14/241 (5%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W+ L +L VN HST IGRVWL+V+FIFRI++L AAE VWGDE+S F+CNT QPGC
Sbjct: 3 DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKK----------MLRLEGH 395
+VCYD FPISH+RLW LQ+I VSTP+L+ H H +E+K G
Sbjct: 63 NVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHYVRMEEKRKSRDEELGQQAGTNGG 122
Query: 396 ADPLHLEEVK----RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVK 563
D +++ K + GTL TY+ ++F+ LFE F+ Y LY G+ ++ L +
Sbjct: 123 PDQGSVKKSSGSKGTKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY-GFRILPLYR 181
Query: 564 CEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNP 743
C +PCPN VDCFVSRPTEKT+F +FML+ + + + LNV E+ +L + +R
Sbjct: 182 CSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVSLFLNVMELSHLGLKGIRSALKRPVEQ 241
Query: 744 P 746
P
Sbjct: 242 P 242
>gi|4504001|ref|NP_000156.1| (NM_000165) connexin 43; gap junction
protein, alpha 1, 43kD; oculodentodigital dysplasia
(syndactyly type III) [Homo sapiens]
Length = 382
Score = 211 bits (538), Expect = 5e-55
Identities = 107/245 (43%), Positives = 155/245 (62%), Gaps = 19/245 (7%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W+ L LL V +STA G+VWLSV+FIFRI++L A ES WGDE+S+F CNT QPGC
Sbjct: 3 DWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPGCE 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLE---------GHA 398
+VCYD FPISHVR W LQ+I VS P LL HV + E+K+ + E G
Sbjct: 63 NVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDGVN 122
Query: 399 DPLHLEEV----------KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
+HL+++ + KV + G L TY+IS++F+ +FE AF+ + + +Y G+++
Sbjct: 123 VDMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSIFEVAFLLIQWYIY-GFSL 181
Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
+ C+ PCP+ VDCF+SRPTEKT+F +FML S + + LN+ E+ Y+ F+ R +
Sbjct: 182 SAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVSLALNIIELFYVFFKGVKDRVK 241
Query: 729 RRSNP 743
+S+P
Sbjct: 242 GKSDP 246
>gi|4504003|ref|NP_002051.1| (NM_002060) connexin 37; gap junction
protein, alpha 4, 37kD (connexin 37); gap junction
protein, alpha 4, 37kD [Homo sapiens]
Length = 333
Score = 204 bits (519), Expect = 8e-53
Identities = 109/253 (43%), Positives = 154/253 (60%), Gaps = 21/253 (8%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W L LL V HST +G++WL+V+FIFRI++L +A ESVWGDE+S F CNT QPGC
Sbjct: 3 DWGFLEKLLDQVREHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG--HADPLHLEE 419
+VCYD FPISH+R W LQ + VSTP L+ HV + E+++ + EG A P +
Sbjct: 63 NVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLAQKEGELRALPAKDPQ 122
Query: 420 VKR-----------------HKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
V+R ++ I L TYV SV+ + + EA F+Y + LY G+ M
Sbjct: 123 VERALAGIELQMAKISVAEDGRLRIPRALMGTYVASVLCKSVLEAGFLYGQWRLY-GWTM 181
Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR--R 722
+ C+ PCP VDCFVSRPTEKT+F +FML I ++LN+ E+V+L+ R +R R
Sbjct: 182 EPVFVCQRAPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLNLLELVHLLCRCLSRGMR 241
Query: 723 AQRRSNPPSRKGS 761
A++ + P +G+
Sbjct: 242 ARQGQDAPPTQGT 254
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22156462
Number of Sequences: 19244
Number of extensions: 561491
Number of successful extensions: 2494
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 2063
length of query: 352
length of database: 10,046,356
effective HSP length: 47
effective length of query: 305
effective length of database: 9,141,888
effective search space: 2788275840
effective search space used: 2788275840
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-003018 (20030531C-003018) 20030531C-003018
(1058 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|22165406|ref|NP_032150.2| (NM_008124) gap junction membrane ... 569 e-163
Alignment gi|6680017|ref|NP_032154.1| (NM_008128) gap junction membrane c... 325 3e-89
Alignment gi|6680011|ref|NP_032151.1| (NM_008125) gap junction membrane c... 319 1e-87
Alignment gi|6680015|ref|NP_032153.1| (NM_008127) gap junction membrane c... 264 6e-71
Alignment gi|6753996|ref|NP_034421.1| (NM_010291) gap junction membrane c... 257 6e-69
Alignment gi|6680013|ref|NP_032152.1| (NM_008126) gap junction membrane c... 257 8e-69
Alignment gi|8393440|ref|NP_058671.1| (NM_016975) gap junction membrane c... 219 1e-57
Alignment gi|6680009|ref|NP_032149.1| (NM_008123) gap junction membrane c... 216 1e-56
Alignment gi|6753992|ref|NP_034418.1| (NM_010288) gap junction membrane c... 212 2e-55
Alignment gi|6680003|ref|NP_032146.1| (NM_008120) gap junction membrane c... 212 3e-55
>gi|22165406|ref|NP_032150.2| (NM_008124) gap junction membrane
channel protein beta 1; connexin 32; connexin-32 [Mus
musculus]
Length = 283
Score = 569 bits (1467), Expect = e-163
Identities = 279/284 (98%), Positives = 280/284 (98%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
KRHKVHISGTLWWTYVISVVFRLLFEA FMYVFYLLYPGYAMVRLVKCEA+PCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCEAFPCPNTVDCF 180
Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 782
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239
Query: 783 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 914
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283
>gi|6680017|ref|NP_032154.1| (NM_008128) gap junction membrane
channel protein beta 6; Connexin 30; DNA segment, Chr
14, Brigham & Women's Genetics 0506 expressed [Mus
musculus]
Length = 261
Score = 325 bits (832), Expect = 3e-89
Identities = 154/260 (59%), Positives = 202/260 (77%), Gaps = 5/260 (1%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
M+W L+T++ GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTVIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 419
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K +R E + LE+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETARKFIRGEKRNEFKDLED 120
Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
+KR KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKRQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR----RSNPPSRKGSGG 767
F+SRPTEKTVFTVFM++AS IC++LNVAE+ YL+ + C RR++R R++P
Sbjct: 181 FISRPTEKTVFTVFMISASVICMLLNVAELCYLLLKLCFRRSKRTQAQRNHP-------- 232
Query: 768 FGHRLSPEYKQNEINKLLSE 827
H L E KQNE+N+L+S+
Sbjct: 233 -NHALK-ESKQNEMNELISD 250
>gi|6680011|ref|NP_032151.1| (NM_008125) gap junction membrane
channel protein beta 2; connexin 26 [Mus musculus]
Length = 226
Score = 319 bits (818), Expect = 1e-87
Identities = 142/224 (63%), Positives = 187/224 (83%), Gaps = 1/224 (0%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
M+W L ++L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1 MDWGTLQSILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 419
+VCYDH FPISH+RLW+LQLI+VSTPALLVAMHVA+++H +K K ++ E + +EE
Sbjct: 61 KNVCYDHHFPISHIRLWALQLIMVSTPALLVAMHVAYRRHEKKRKFMKGEIKNEFKDIEE 120
Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 599
+K KV I G+LWWTY S+ FR++FEA FMYVFY++Y G+ M RLVKC A+PCPNTVDC
Sbjct: 121 IKTQKVRIEGSLWWTYTTSIFFRVIFEAVFMYVFYIMYNGFFMQRLVKCNAWPCPNTVDC 180
Query: 600 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 731
F+SRPTEKTVFTVFM++ SGICI+LN+ E+ YL R C+ +++R
Sbjct: 181 FISRPTEKTVFTVFMISVSGICILLNITELCYLFVRYCSGKSKR 224
>gi|6680015|ref|NP_032153.1| (NM_008127) gap junction membrane
channel protein beta 4; connexin 30.3 [Mus musculus]
Length = 266
Score = 264 bits (674), Expect = 6e-71
Identities = 119/231 (51%), Positives = 166/231 (71%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
MNW L +LSGVN++STA+GR+WLSV+FIFR++V VVAAE VW D++ FICNT QPGC
Sbjct: 1 MNWGFLQGILSGVNKYSTALGRIWLSVVFIFRVLVYVVAAEEVWDDDQKDFICNTKQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ E+K G P +
Sbjct: 61 PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREERERKHRLKHGPNAPALYSNL 120
Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
+ + G LWWTY++S++F+ ++ F+Y+F+ +Y Y M R+V C PCP+TVDC+
Sbjct: 121 SKKR----GGLWWTYLLSLIFKAAVDSGFLYIFHCIYKDYDMPRVVACSVTPCPHTVDCY 176
Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRK 755
++RPTEK VFT FM+ + ICI+LN++EVVYL+ + C + R SR+
Sbjct: 177 IARPTEKKVFTYFMVVTAAICILLNLSEVVYLVGKRCMEVFRPRRRKASRR 227
>gi|6753996|ref|NP_034421.1| (NM_010291) gap junction membrane
channel protein beta 5; connexin 31.1 [Mus musculus]
Length = 271
Score = 257 bits (657), Expect = 6e-69
Identities = 117/227 (51%), Positives = 159/227 (69%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
MNW+ LLSGVN++STA GR+WLS++F+FR++V +V AE VWGD++ F CNT QPGC
Sbjct: 1 MNWSVFEGLLSGVNKYSTAFGRIWLSLVFVFRVLVYLVTAERVWGDDQKDFDCNTRQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 422
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ EKK G
Sbjct: 61 TNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYRKAREKKYQEKIGEGYLYPNPGK 120
Query: 423 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 602
KR G LWWTYV S+ F+ + F+Y+F+ YP Y + +VKC A PCPNTVDCF
Sbjct: 121 KR------GGLWWTYVFSLSFKATIDIIFLYLFHAFYPRYTLPSMVKCHAEPCPNTVDCF 174
Query: 603 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNP 743
+++P+EK +F VFM+ + ICI+LN+ E++YL+ + C+ AQ R P
Sbjct: 175 IAKPSEKNIFIVFMVVTAVICILLNLVELIYLVIKRCSECAQLRRPP 221
>gi|6680013|ref|NP_032152.1| (NM_008126) gap junction membrane
channel protein beta 3; connexin 31; DNA segment, Chr 4,
Wayne State University 144, expressed [Mus musculus]
Length = 270
Score = 257 bits (656), Expect = 8e-69
Identities = 119/221 (53%), Positives = 162/221 (72%), Gaps = 2/221 (0%)
Frame = +3
Query: 63 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 242
M+W L LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+ F CNT QPGC
Sbjct: 1 MDWKKLQDLLSGVNQYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTRQPGC 60
Query: 243 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 419
+VCYD+FFPIS++RLW+LQLI V+ P++LV +HVA+++ E+K + G L+
Sbjct: 61 TNVCYDNFFPISNIRLWALQLIFVTCPSMLVILHVAYREERERKHRQKHGEQCAKLYSHP 120
Query: 420 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEA-YPCPNTVD 596
K+H G LWWTY+ S++F+L+ E F+YV + L+ G+ M RLV+C + PCPNTVD
Sbjct: 121 GKKH-----GGLWWTYLFSLIFKLIIELVFLYVLHTLWHGFTMPRLVQCASIVPCPNTVD 175
Query: 597 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR 719
C+++RPTEK VFT FM+ AS +CIIL + E+ YLIF R
Sbjct: 176 CYIARPTEKKVFTYFMVGASAVCIILTICEICYLIFHRIMR 216
>gi|8393440|ref|NP_058671.1| (NM_016975) gap junction membrane
channel protein alpha 3; connexin 46; alpha 3 connexin
[Mus musculus]
Length = 417
Score = 219 bits (559), Expect = 1e-57
Identities = 111/245 (45%), Positives = 152/245 (61%), Gaps = 19/245 (7%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W+ L LL HST IG+VWL+V+FIFRI+VL AAE VWGDE+S F CNT QPGC
Sbjct: 3 DWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPGCE 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKK-------MLRLEGHADP 404
+VCYD FPISH+R W+LQ+I VSTP L+ HV H +E+K +LR +
Sbjct: 63 NVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEELLRRDNPQHG 122
Query: 405 LHLEEVK------------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
E ++ R KV I+G L TYV +++F+ LFE F+ Y LY G+ +
Sbjct: 123 RGREPMRTGSPRDPPLRDDRGKVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLY-GFQL 181
Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
L +C+ +PCPNTVDCF+SRPTEKT+F +FMLA + ++LN+ E+ +L ++ +
Sbjct: 182 QPLYRCDRWPCPNTVDCFISRPTEKTIFVIFMLAVACASLVLNMLEIYHLGWKKLKQGVT 241
Query: 729 RRSNP 743
NP
Sbjct: 242 NHFNP 246
>gi|6680009|ref|NP_032149.1| (NM_008123) gap junction membrane
channel protein alpha 8; connexin 50; alpha 8 connexin;
lens opacity 10 [Mus musculus]
Length = 440
Score = 216 bits (551), Expect = 1e-56
Identities = 119/299 (39%), Positives = 167/299 (55%), Gaps = 22/299 (7%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W+ L +L VN HST IGRVWL+V+FIFRI++L AAE VWGDE+S F+CNT QPGC
Sbjct: 3 DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLE------------ 389
+VCYD FPISH+RLW LQ+I VSTP+L+ H H +E+K E
Sbjct: 63 NVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHHVRMEEKRKDREAEELCQQSRSNG 122
Query: 390 GHADPLHLEEVK----------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPG 539
G P+ ++ K + GTL TYV ++F+ LFE F+ Y LY G
Sbjct: 123 GERVPIAPDQASIRKSSSSSKGTKKFRLEGTLLRTYVCHIIFKTLFEVGFIVGHYFLY-G 181
Query: 540 YAMVRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR 719
+ ++ L +C +PCPN VDCFVSRPTEKT+F +FML+ + + + LN+ E+ +L +
Sbjct: 182 FRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVAFVSLFLNIMEMSHLGMKGIRS 241
Query: 720 RAQRRSNPPSRKGSGGFGHRLSPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKS 896
+R P + + H ++ Q L E++ K + P T G+ E S
Sbjct: 242 AFKRPVEQPLGEIAEKSLHSIAVSSIQKAKGYQLLEEE---KIVSHYFPLTEVGMVETS 297
>gi|6753992|ref|NP_034418.1| (NM_010288) gap junction membrane
channel protein alpha 1; connexin 43; alpha 1 connexin
[Mus musculus]
Length = 382
Score = 212 bits (540), Expect = 2e-55
Identities = 108/245 (44%), Positives = 155/245 (63%), Gaps = 19/245 (7%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W+ L LL V +STA G+VWLSV+FIFRI++L A ES WGDE+S+F CNT QPGC
Sbjct: 3 DWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPGCE 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLE---------GHA 398
+VCYD FPISHVR W LQ+I VS P LL HV + E+K+ + E G
Sbjct: 63 NVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKEEELKVAQTDGVN 122
Query: 399 DPLHLEEV----------KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
+HL+++ + KV + G L TY+IS++F+ +FE AF+ + + +Y G+++
Sbjct: 123 VEMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSVFEVAFLLIQWYIY-GFSL 181
Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
+ C+ PCP+ VDCF+SRPTEKT+F +FML S + + LN+ E+ Y+ F+ R +
Sbjct: 182 SAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVSLALNIIELFYVFFKGVKDRVK 241
Query: 729 RRSNP 743
RS+P
Sbjct: 242 GRSDP 246
>gi|6680003|ref|NP_032146.1| (NM_008120) gap junction membrane
channel protein alpha 4; connexin 37 [Mus musculus]
Length = 333
Score = 212 bits (539), Expect = 3e-55
Identities = 107/252 (42%), Positives = 154/252 (60%), Gaps = 19/252 (7%)
Frame = +3
Query: 66 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 245
+W L LL V HST +G++WL+V+FIFRI++L +A ESVWGDE+S F CNT QPGC
Sbjct: 3 DWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPGCT 62
Query: 246 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH-----ADPLH 410
+VCYD FPISH+R W LQ + VSTP L+ HV + E+++ + EG + LH
Sbjct: 63 NVCYDQAFPISHIRYWVLQFLFVSTPTLIYLGHVIYLSRREERLRQKEGELRALPSKDLH 122
Query: 411 LEE--------------VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 548
+E + ++ I G L TYV+SV+ + + EA F+Y + LY G+ M
Sbjct: 123 VERALAAIEHQMAKISVAEDGRLRIRGALMGTYVVSVLCKSVLEAGFLYGQWRLY-GWTM 181
Query: 549 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 728
+ C+ PCP+ VDC+VSRPTEKT+F +FML I ++LN+ E+V+L+ R +R +
Sbjct: 182 EPVFVCQRAPCPHIVDCYVSRPTEKTIFIIFMLVVGVISLVLNLLELVHLLCRCVSREIK 241
Query: 729 RRSNPPSRKGSG 764
R + +R G
Sbjct: 242 ARRDHDARPAQG 253
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15590819
Number of Sequences: 15330
Number of extensions: 383967
Number of successful extensions: 1727
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of query: 352
length of database: 7,155,815
effective HSP length: 47
effective length of query: 305
effective length of database: 6,435,305
effective search space: 1962768025
effective search space used: 1962768025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)