Search to RefSeq (Human) database
Query= 20030531C-003267 (20030531C-003267) 20030531C-003267
(1615 letters)
Database: RefSeq (Homo Sapiens/Amino Acid)
19,244 sequences; 10,046,356 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|16757970|ref|NP_443198.1| (NM_052966) niban protein [Homo sa... 389 e-108
Alignment gi|11545797|ref|NP_071366.1| (NM_022083) niban protein [Homo sa... 389 e-108
Alignment gi|24308287|ref|NP_073744.1| (NM_022833) hypothetical protein D... 103 3e-22
Alignment gi|22726193|ref|NP_060228.1| (NM_017758) hypothetical protein F... 36 0.062
Alignment gi|31542207|ref|NP_775815.2| (NM_173544) B-cell novel protein 1... 34 0.31
Alignment gi|16357498|ref|NP_076916.1| (NM_024011) cell division cycle 2-... 33 0.40
Alignment gi|16357482|ref|NP_277070.1| (NM_033528) cell division cycle 2-... 33 0.40
Alignment gi|16357486|ref|NP_277073.1| (NM_033531) cell division cycle 2-... 33 0.40
Alignment gi|16357484|ref|NP_277071.1| (NM_033529) cell division cycle 2-... 33 0.40
Alignment gi|16357492|ref|NP_284922.1| (NM_033536) cell division cycle 2-... 33 0.40
>gi|16757970|ref|NP_443198.1| (NM_052966) niban protein [Homo sapiens]
Length = 928
Score = 389 bits (1000), Expect = e-108
Identities = 236/433 (54%), Positives = 266/433 (60%)
Frame = +1
Query: 1 QYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYE 180
QYDYDSSTIRK+IFQEALVQITLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENVYE
Sbjct: 483 QYDYDSSTIRKKIFQEALVQITLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENVYE 542
Query: 181 EILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRAS 360
EILHQILLDETLKVIKEAA+LKKHNLFEDNMALPSESVSSLTDLK P GSNQASPARRAS
Sbjct: 543 EILHQILLDETLKVIKEAAILKKHNLFEDNMALPSESVSSLTDLKPPTGSNQASPARRAS 602
Query: 361 AILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDD 540
AILPG SE +SNEVFQ LAKGE G Q+IIS +DD
Sbjct: 603 AILPGVLGSETLSNEVFQESEEEKQPEVPSSLAKGESLSLPGPSPPPDGTEQVIISRVDD 662
Query: 541 PAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEV 720
P VN VA EDTAG GT SS +ASGSLK LR LLT ++EV
Sbjct: 663 PVVNPVATEDTAGLPGTCSSELEFGGTLEDEEPAQEEPEPITASGSLKALRKLLTASVEV 722
Query: 721 PAESGKLKIEEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXX 900
P +S + +EEDTN E+ VPQE E+EEE QAAA DNC E++V ERE
Sbjct: 723 PVDSAPV-MEEDTNGESHVPQENEEEEEKE-----PSQAAAIHPDNCEESEVSEREAQ-- 774
Query: 901 XXXXXXXXXXXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXX 1080
G + S G TEE + GP +GEL A L
Sbjct: 775 ----PPCPEAHGEELGGFPEVGSPASPPASGGLTEEPL---GPMEGELPGEACTLTAHEG 827
Query: 1081 XXXXXXXXXXXXPQEGCMFSSDPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAH 1260
QEGC SDP+ ESQ+S +E +GG+ S A ASV+A E + A
Sbjct: 828 RGGKCTEEGDASQQEGCTLGSDPICLSESQVSEEQEEMGGQSSAAQATASVNAEEIKVAR 887
Query: 1261 VHQCPWVVENDPN 1299
+H+C WVVE+ PN
Sbjct: 888 IHECQWVVEDAPN 900
>gi|11545797|ref|NP_071366.1| (NM_022083) niban protein [Homo sapiens]
Length = 726
Score = 389 bits (1000), Expect = e-108
Identities = 236/433 (54%), Positives = 266/433 (60%)
Frame = +1
Query: 1 QYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYE 180
QYDYDSSTIRK+IFQEALVQITLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENVYE
Sbjct: 281 QYDYDSSTIRKKIFQEALVQITLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENVYE 340
Query: 181 EILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRAS 360
EILHQILLDETLKVIKEAA+LKKHNLFEDNMALPSESVSSLTDLK P GSNQASPARRAS
Sbjct: 341 EILHQILLDETLKVIKEAAILKKHNLFEDNMALPSESVSSLTDLKPPTGSNQASPARRAS 400
Query: 361 AILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDD 540
AILPG SE +SNEVFQ LAKGE G Q+IIS +DD
Sbjct: 401 AILPGVLGSETLSNEVFQESEEEKQPEVPSSLAKGESLSLPGPSPPPDGTEQVIISRVDD 460
Query: 541 PAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEV 720
P VN VA EDTAG GT SS +ASGSLK LR LLT ++EV
Sbjct: 461 PVVNPVATEDTAGLPGTCSSELEFGGTLEDEEPAQEEPEPITASGSLKALRKLLTASVEV 520
Query: 721 PAESGKLKIEEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXX 900
P +S + +EEDTN E+ VPQE E+EEE QAAA DNC E++V ERE
Sbjct: 521 PVDSAPV-MEEDTNGESHVPQENEEEEEKE-----PSQAAAIHPDNCEESEVSEREAQ-- 572
Query: 901 XXXXXXXXXXXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDXXXX 1080
G + S G TEE + GP +GEL A L
Sbjct: 573 ----PPCPEAHGEELGGFPEVGSPASPPASGGLTEEPL---GPMEGELPGEACTLTAHEG 625
Query: 1081 XXXXXXXXXXXXPQEGCMFSSDPLSPRESQMSVGEELVGGECSTALDAASVDAGEREAAH 1260
QEGC SDP+ ESQ+S +E +GG+ S A ASV+A E + A
Sbjct: 626 RGGKCTEEGDASQQEGCTLGSDPICLSESQVSEEQEEMGGQSSAAQATASVNAEEIKVAR 685
Query: 1261 VHQCPWVVENDPN 1299
+H+C WVVE+ PN
Sbjct: 686 IHECQWVVEDAPN 698
>gi|24308287|ref|NP_073744.1| (NM_022833) hypothetical protein
DKFZp434H0820 [Homo sapiens]
Length = 733
Score = 103 bits (257), Expect = 3e-22
Identities = 46/93 (49%), Positives = 69/93 (73%)
Frame = +1
Query: 1 QYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYE 180
+YDYDSS++RKR F+EAL+QI++P + K LA CK EL ++++ IF D I VEN YE
Sbjct: 466 KYDYDSSSVRKRFFREALLQISIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYE 525
Query: 181 EILHQILLDETLKVIKEAAVLKKHNLFEDNMAL 279
E++ Q ++ + L+ +KEAAV +KHNL+ D+M +
Sbjct: 526 EVVLQTVMKDILQAVKEAAVQRKHNLYRDSMVM 558
>gi|22726193|ref|NP_060228.1| (NM_017758) hypothetical protein
FLJ20308 [Homo sapiens]
Length = 378
Score = 36.2 bits (82), Expect = 0.062
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 721 PAESGKLKIEEDTNEET--LVPQEMEKEEETTQVCTGAHQAAASSQDNCAE 867
P K K +ED++ E Q+++KEEE +V +G Q SQD CA+
Sbjct: 36 PVSGAKRKYQEDSDPERSDYEEQQLQKEEEARKVKSGIRQMRLFSQDECAK 86
>gi|31542207|ref|NP_775815.2| (NM_173544) B-cell novel protein 1
[Homo sapiens]
Length = 697
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/76 (27%), Positives = 38/76 (49%), Gaps = 3/76 (3%)
Frame = +1
Query: 1 QYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYE 180
++ DS ++R + + I LP + L CK EL ++E + A + + E +YE
Sbjct: 514 KFKSDSGLAQRRFIRGWGLCIFLPFVLSQLEPGCKKELPEFEGDVLAVGSQALTTEGIYE 573
Query: 181 EILHQILL---DETLK 219
+++ LL D+ LK
Sbjct: 574 DVIRGCLLQRIDQELK 589
>gi|16357498|ref|NP_076916.1| (NM_024011) cell division cycle 2-like 2
isoform 1; cell division cycle 2-like 3; p58GTA protein
kinase; PITSLRE protein kinase beta;
galactosyltransferase associated protein kinase; PITSLRE
A [Homo sapiens]
Length = 777
Score = 33.5 bits (75), Expect = 0.40
Identities = 29/102 (28%), Positives = 38/102 (36%)
Frame = +1
Query: 748 EEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXX 927
EE+ EE +E E+EEE + TG++ AS Q + +V E E
Sbjct: 295 EEEEEEEGSTSEESEEEEEEEEEETGSNSEEASEQ---SAEEVSEEEMSEDEERENENHL 351
Query: 928 XXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEG 1053
GE E EE+V G P LTEG
Sbjct: 352 LVVPESRFDRDSGESEE-------AEEEVGEGTPQSSALTEG 386
>gi|16357482|ref|NP_277070.1| (NM_033528) cell division cycle 2-like 2
isoform 3; cell division cycle 2-like 3; p58GTA protein
kinase; PITSLRE protein kinase beta;
galactosyltransferase associated protein kinase; PITSLRE
A [Homo sapiens]
Length = 776
Score = 33.5 bits (75), Expect = 0.40
Identities = 29/102 (28%), Positives = 38/102 (36%)
Frame = +1
Query: 748 EEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXX 927
EE+ EE +E E+EEE + TG++ AS Q + +V E E
Sbjct: 294 EEEEEEEGSTSEESEEEEEEEEEETGSNSEEASEQ---SAEEVSEEEMSEDEERENENHL 350
Query: 928 XXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEG 1053
GE E EE+V G P LTEG
Sbjct: 351 LVVPESRFDRDSGESEE-------AEEEVGEGTPQSSALTEG 385
>gi|16357486|ref|NP_277073.1| (NM_033531) cell division cycle 2-like 2
isoform 5; cell division cycle 2-like 3; p58GTA protein
kinase; PITSLRE protein kinase beta;
galactosyltransferase associated protein kinase; PITSLRE
A [Homo sapiens]
Length = 780
Score = 33.5 bits (75), Expect = 0.40
Identities = 29/102 (28%), Positives = 38/102 (36%)
Frame = +1
Query: 748 EEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXX 927
EE+ EE +E E+EEE + TG++ AS Q + +V E E
Sbjct: 298 EEEEEEEGSTSEESEEEEEEEEEETGSNSEEASEQ---SAEEVSEEEMSEDEERENENHL 354
Query: 928 XXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEG 1053
GE E EE+V G P LTEG
Sbjct: 355 LVVPESRFDRDSGESEE-------AEEEVGEGTPQSSALTEG 389
>gi|16357484|ref|NP_277071.1| (NM_033529) cell division cycle 2-like 2
isoform 4; cell division cycle 2-like 3; p58GTA protein
kinase; PITSLRE protein kinase beta;
galactosyltransferase associated protein kinase; PITSLRE
A [Homo sapiens]
Length = 767
Score = 33.5 bits (75), Expect = 0.40
Identities = 29/102 (28%), Positives = 38/102 (36%)
Frame = +1
Query: 748 EEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXX 927
EE+ EE +E E+EEE + TG++ AS Q + +V E E
Sbjct: 285 EEEEEEEGSTSEESEEEEEEEEEETGSNSEEASEQ---SAEEVSEEEMSEDEERENENHL 341
Query: 928 XXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEG 1053
GE E EE+V G P LTEG
Sbjct: 342 LVVPESRFDRDSGESEE-------AEEEVGEGTPQSSALTEG 376
>gi|16357492|ref|NP_284922.1| (NM_033536) cell division cycle 2-like 2
isoform 1; cell division cycle 2-like 3; p58GTA protein
kinase; PITSLRE protein kinase beta;
galactosyltransferase associated protein kinase; PITSLRE
A [Homo sapiens]
Length = 777
Score = 33.5 bits (75), Expect = 0.40
Identities = 29/102 (28%), Positives = 38/102 (36%)
Frame = +1
Query: 748 EEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERETHXXXXXXXXXXX 927
EE+ EE +E E+EEE + TG++ AS Q + +V E E
Sbjct: 295 EEEEEEEGSTSEESEEEEEEEEEETGSNSEEASEQ---SAEEVSEEEMSEDEERENENHL 351
Query: 928 XXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEG 1053
GE E EE+V G P LTEG
Sbjct: 352 LVVPESRFDRDSGESEE-------AEEEVGEGTPQSSALTEG 386
Database: RefSeq (Homo Sapiens/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 10,046,356
Number of sequences in database: 19,244
Lambda K H
0.313 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35062368
Number of Sequences: 19244
Number of extensions: 941413
Number of successful extensions: 3483
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 3009
length of query: 538
length of database: 10,046,356
effective HSP length: 53
effective length of query: 484
effective length of database: 9,026,424
effective search space: 4368789216
effective search space used: 4368789216
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search to RefSeq (Mouse) database
Query= 20030531C-003267 (20030531C-003267) 20030531C-003267
(1615 letters)
Database: RefSeq (Mus Musculus/Amino Acid)
15,330 sequences; 7,155,815 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|11528504|ref|NP_071301.1| (NM_022018) niban protein [Mus mus... 337 7e-93
Alignment gi|22122641|ref|NP_666231.1| (NM_146119) RIKEN cDNA 9130404D14 ... 105 4e-23
Alignment gi|29126193|ref|NP_803415.1| (NM_177464) DNA segment, Chr 19, E... 35 0.075
Alignment gi|30424609|ref|NP_776122.1| (NM_173761) RIKEN cDNA 2210410K23 ... 33 0.37
Alignment gi|6679048|ref|NP_032717.1| (NM_008691) neurofilament 3, medium... 32 0.83
Alignment gi|6755668|ref|NP_035614.1| (NM_011484) signal transducing adap... 31 1.4
Alignment gi|30425118|ref|NP_780616.1| (NM_175407) RIKEN cDNA 5330439J01 ... 31 1.8
Alignment gi|31044423|ref|NP_766531.2| (NM_172943) expressed sequence AW0... 31 1.8
Alignment gi|6671652|ref|NP_031600.1| (NM_007574) complement component 1,... 30 2.4
Alignment gi|22122369|ref|NP_666053.1| (NM_145941) eukaryotic translation... 30 3.1
>gi|11528504|ref|NP_071301.1| (NM_022018) niban protein [Mus musculus]
Length = 725
Score = 337 bits (865), Expect = 7e-93
Identities = 220/463 (47%), Positives = 262/463 (56%), Gaps = 13/463 (2%)
Frame = +1
Query: 1 QYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYE 180
QYDYDSSTIRK+IFQEAL+QITLPT+QKALAS CKPELQKYEQFIFADHT+MIHVENVYE
Sbjct: 281 QYDYDSSTIRKKIFQEALIQITLPTVQKALASTCKPELQKYEQFIFADHTNMIHVENVYE 340
Query: 181 EILHQILLDETLKVIKEAAVLKKHNLFEDNMALPSESVSSLTDLKTPAGSNQASPARRAS 360
EIL++ILLDETLKVI EAA+LKKHNLFEDNMALPSESVSSLTDLKT GSNQASPARR S
Sbjct: 341 EILYEILLDETLKVITEAAILKKHNLFEDNMALPSESVSSLTDLKTAMGSNQASPARRVS 400
Query: 361 AILPGGPDSEIVSNEVFQXXXXXXXXXXXXXLAKGEXXXXXXXXXXXGGDGQLIISSMDD 540
AILPG PD+E+ SNEVFQ GGDGQ+ S+D
Sbjct: 401 AILPGAPDNELPSNEVFQEPEEKKEQPGVPG-----SLAISASSCPSGGDGQV---SVDH 452
Query: 541 PAVNLVAAEDTAGDLGTHSSXXXXXXXXXXXXXXXXXXXXTSASGSLKELRDLLTVTIEV 720
A + E+TAG L +H S ++ GSLKEL+ LLTVT+ V
Sbjct: 453 SAGGPLTVENTAGPLSSHLSEVEAGGTLKDEEPTCQSPEPSAVPGSLKELKKLLTVTVSV 512
Query: 721 PAESGKLKIEEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERET--- 891
ES + +E D + T VPQE KEEE +++ A AA QD+C E +V E+E
Sbjct: 513 --ESAPV-VENDIHNGTPVPQENIKEEE-SKIHPEASHPAAIQQDSCEEREVREKEAQPL 568
Query: 892 HXXXXXXXXXXXXXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLDX 1071
G L+E T PGP EE EA P + L S D
Sbjct: 569 EAEAPGVDLGILPEGRGSTSQSTSGGLTENTSCPGPIEEPFEAQEPAEKVLPAIVSTED- 627
Query: 1072 XXXXXXXXXXXXXXXPQEGCMFSSDPLSPRES----QMSVGEELVGGECSTALDAASVDA 1239
PQE SS+P+ P ES Q S +E++GGE S+AL +D
Sbjct: 628 SPQAGGEAEHSVTVTPQEDATLSSNPICPMESNEVAQASGDQEVLGGEDSSAL---GMDT 684
Query: 1240 GEREAAHVHQCPWVVENDPNTTETLE------SQPEGPPAQPW 1350
+ H H C W+VE D +T+ L S PE P++ W
Sbjct: 685 EQVNDTHEHACQWLVE-DTLSTDILAVHDFDVSSPE-QPSEEW 725
>gi|22122641|ref|NP_666231.1| (NM_146119) RIKEN cDNA 9130404D14 [Mus
musculus]
Length = 749
Score = 105 bits (263), Expect = 4e-23
Identities = 48/93 (51%), Positives = 69/93 (73%)
Frame = +1
Query: 1 QYDYDSSTIRKRIFQEALVQITLPTMQKALASMCKPELQKYEQFIFADHTHMIHVENVYE 180
+YDYDSS++RKR F+EAL+QIT+P + K LA CK EL ++++ IF D I VEN YE
Sbjct: 479 KYDYDSSSVRKRFFREALLQITIPFLLKKLAPTCKSELPRFQELIFEDFARFILVENTYE 538
Query: 181 EILHQILLDETLKVIKEAAVLKKHNLFEDNMAL 279
E++ Q ++ + L+ +KEAAV +KHNL+ D+M L
Sbjct: 539 EVVLQTVMKDILQAVKEAAVQRKHNLYRDSMVL 571
>gi|29126193|ref|NP_803415.1| (NM_177464) DNA segment, Chr 19, ERATO
Doi 386, expressed [Mus musculus]
Length = 775
Score = 35.4 bits (80), Expect = 0.075
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 265 DNMALP----SESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSNEV 408
D MA+P S+S ++ + L+TP G ++ SP + +PGGPD ++ S V
Sbjct: 227 DGMAMPVTLSSDSETAPSSLETPDGMSKHSPGDISVVSVPGGPDEDVDSTFV 278
>gi|30424609|ref|NP_776122.1| (NM_173761) RIKEN cDNA 2210410K23 [Mus
musculus]
Length = 559
Score = 33.1 bits (74), Expect = 0.37
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = -1
Query: 1117 AQPQPRQHTRPLLLQGHPVRKPPL*APLWGAPRPLLAPLW 998
A PQP+Q +PL PV+ PPL P + +P+ L P W
Sbjct: 294 AAPQPQQVAQPL-----PVQPPPLVQPQYQSPQQPLQPRW 328
>gi|6679048|ref|NP_032717.1| (NM_008691) neurofilament 3, medium;
neurofilament, medium polypeptide [Mus musculus]
Length = 849
Score = 32.0 bits (71), Expect = 0.83
Identities = 30/119 (25%), Positives = 40/119 (33%)
Frame = +1
Query: 712 IEVPAESGKLKIEEDTNEETLVPQEMEKEEETTQVCTGAHQAAASSQDNCAENQVHERET 891
+E P + K E+ EET V E + EET A+A + AE + E E
Sbjct: 441 VEAPKLKVQHKFVEEIIEETKVEDEKSEMEETLTAIAEELAASAKEEKEEAEEKEEEPEA 500
Query: 892 HXXXXXXXXXXXXXXXXXXXXXXCGELSEGTRSPGPTEEQVEAGGPPKGELTEGASGLD 1068
G+ E G +Q E GG K EG+S D
Sbjct: 501 EKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEK----EGSSEKD 555
>gi|6755668|ref|NP_035614.1| (NM_011484) signal transducing adaptor
molecule (SH3 domain and ITAM motif) 1 [Mus musculus]
Length = 548
Score = 31.2 bits (69), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 274 ALPSESVSSLTDLKTPAGSNQASPARRASAILPGGPDSEIVSN 402
+LP E +SS++ P+ +NQA P+++ A P S + N
Sbjct: 429 SLPPEQLSSISQGAVPSSANQALPSQQTQASYPNAMVSSVQGN 471
>gi|30425118|ref|NP_780616.1| (NM_175407) RIKEN cDNA 5330439J01 [Mus
musculus]
Length = 106
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/52 (36%), Positives = 24/52 (45%)
Frame = +3
Query: 630 PRTPPGKARAHLCLRLLEGTQRPVDSDH*STSGVWQAQD*RRYK*GDPGSPG 785
P TP G+ L L+L + TQ PV + W Q R + DP SPG
Sbjct: 5 PVTPAGQLTTSLWLKLKQITQLPVIKHLGGSGSPWWPQGRRSQQVLDPSSPG 56
>gi|31044423|ref|NP_766531.2| (NM_172943) expressed sequence
AW050020 [Mus musculus]
Length = 395
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/46 (36%), Positives = 27/46 (57%), Gaps = 2/46 (4%)
Frame = +1
Query: 736 KLKIEEDTNEETLVPQE--MEKEEETTQVCTGAHQAAASSQDNCAE 867
K K +ED++ E +E ++KEEE +V +G Q SQD C++
Sbjct: 58 KRKYQEDSDPERSDYEEHQLQKEEEARKVKSGIRQIRLFSQDECSK 103
>gi|6671652|ref|NP_031600.1| (NM_007574) complement component 1, q
subcomponent, gamma polypeptide; complement component 1,
q subcomponent, c polypeptide [Mus musculus]
Length = 246
Score = 30.4 bits (67), Expect = 2.4
Identities = 28/82 (34%), Positives = 39/82 (47%)
Frame = +3
Query: 405 GIPGVRGKEGVWGLQFFGQRRKPSFPCAQPSPRRGRAAHHFKHG*PCCESCGCRGHSRRP 584
G+PG GK+G GLQ G + +P P + +G + G P G RG +
Sbjct: 41 GMPGAPGKDGHDGLQ--GPKGEPGIPAVPGT--QGPKGQKGEPGMP-----GHRGKNGPR 91
Query: 585 GHTLIRAGV*GDS*GPRTPPGK 650
G +G+ GD GPR PPG+
Sbjct: 92 G----TSGLPGDP-GPRGPPGE 108
>gi|22122369|ref|NP_666053.1| (NM_145941) eukaryotic translation
initiation factor 4, gamma 1; hypothetical protein
MGC37551 [Mus musculus]
Length = 642
Score = 30.0 bits (66), Expect = 3.1
Identities = 34/126 (26%), Positives = 49/126 (37%), Gaps = 8/126 (6%)
Frame = +2
Query: 1022 GGPPKGSLQRGLP-------DWMPLEE-KGPCVLSRLRLCPKKVACSVRTPSAPGRARCL 1177
GGPP + RGLP + +P+ + P SRL K + R
Sbjct: 79 GGPPGPPINRGLPLVDDGGWNTVPISKGSRPIDTSRLTKITKPGSIDSNNQLFAPGGRLS 138
Query: 1178 WEKNWWEGSAAQPWMLPAWMQGRGRLPMFTSVRGWLRMIQTPPRPWSHSQRVPQHSPGRS 1357
W K GS A+P + L F++++ QT P + ++RV Q S
Sbjct: 139 WGKGSSGGSGAKPSDTASEATRPATLNRFSALQ------QTLPAENTDNRRVVQRSSLSR 192
Query: 1358 ERGSLA 1375
ERG A
Sbjct: 193 ERGEKA 198
Database: RefSeq (Mus Musculus/Amino Acid)
Posted date: Jul 1, 2003 6:07 AM
Number of letters in database: 7,155,815
Number of sequences in database: 15,330
Lambda K H
0.313 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24564551
Number of Sequences: 15330
Number of extensions: 633276
Number of successful extensions: 2098
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of query: 538
length of database: 7,155,815
effective HSP length: 51
effective length of query: 486
effective length of database: 6,373,985
effective search space: 3097756710
effective search space used: 3097756710
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)