Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-001704
(1457 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851237.1| PREDICTED: similar to LINE-1 reverse transcript... 250 5e-99
Alignment gi|XP_848463.1| PREDICTED: similar to LINE-1 reverse transcript... 249 1e-93
Alignment gi|XP_852055.1| PREDICTED: similar to LINE-1 reverse transcript... 202 2e-84
Alignment gi|XP_850691.1| PREDICTED: similar to LINE-1 reverse transcript... 266 4e-71
Alignment gi|XP_854759.1| PREDICTED: similar to LINE-1 reverse transcript... 265 6e-71
Alignment gi|XP_851979.1| PREDICTED: similar to LINE-1 reverse transcript... 264 1e-70
Alignment gi|XP_538066.2| PREDICTED: similar to LINE-1 reverse transcript... 263 2e-70
Alignment gi|XP_850132.1| PREDICTED: similar to LINE-1 reverse transcript... 263 4e-70
Alignment gi|XP_536180.2| PREDICTED: similar to LINE-1 reverse transcript... 263 4e-70
Alignment gi|XP_853568.1| PREDICTED: similar to LINE-1 reverse transcript... 263 4e-70
>ref|XP_851237.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1275
Score = 250 bits (638), Expect(3) = 5e-99
Identities = 123/232 (53%), Positives = 169/232 (72%), Gaps = 12/232 (5%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 2 MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 61
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H +G +KAGVA+LISDK++F K + +D+EGHY++ KGSI +ED+ I+N YAPN+GA
Sbjct: 62 IYHLNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVGA 121
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR-LN*Y-----FQDI- 668
+KYI ++T +K +D NT+I+GDFN L+ DRSS+H S+K R LN F DI
Sbjct: 122 AKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKHNISKKTRALNDTLDQMDFTDIE 181
Query: 669 ---ISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFSDHNGM 815
EYTFF SAHGTFSRID+I GHK+ LN+++ I + +FSDHN +
Sbjct: 182 RTLHPNSTEYTFFSSAHGTFSRIDHIFGHKSGLNRYQKIGIVPCIFSDHNAL 233
Score = 102 bits (255), Expect(3) = 5e-99
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+Q+LWDAAKAVLRGK+
Sbjct: 241 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTLQHLWDAAKAVLRGKY 299
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E++QI LT +L ELEK++Q P
Sbjct: 300 IAIQASIQKLERTQIQKLTLHLKELEKKQQIDP 332
Score = 50.1 bits (118), Expect(3) = 5e-99
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 12/99 (12%)
Frame = +3
Query: 1155 EISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTA 1334
E+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T
Sbjct: 346 ELNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTK 405
Query: 1335 K---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
+ I++ YYE L K FLE++ LP+L QE
Sbjct: 406 EIQTILKTYYEQLYANKLGNLEEMDAFLESHKLPQLEQE 444
>ref|XP_848463.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1272
Score = 249 bits (635), Expect(3) = 1e-93
Identities = 116/232 (50%), Positives = 168/232 (72%), Gaps = 12/232 (5%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R TY LK+++W
Sbjct: 1 MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQMDTYSLKMKDWRT 60
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H++G +KAGVA+LISDK++F K + +D+EGHY++ KGSI +ED+ I+N YAPN+G
Sbjct: 61 IYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVGT 120
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDFN L+ DRSS+H S++ R +
Sbjct: 121 AKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKHNISKETRALNDTLDQMDFTDIY 180
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFSDHNGM 815
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FSDHN +
Sbjct: 181 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNAL 232
Score = 85.1 bits (209), Expect(3) = 1e-93
Identities = 47/93 (50%), Positives = 64/93 (68%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K ++ETN+NE+TTIQNLWDAAKAVLR
Sbjct: 240 KKFGRTSNTWRLRTILLKDER-VNQEIKEELKTFMETNENEDTTIQNLWDAAKAVLRDAC 298
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
+ K E++QI LT ++ ELEK++Q P
Sbjct: 299 NT--SIHSKLERTQIQKLTLHIKELEKKQQIDP 329
Score = 51.2 bits (121), Expect(3) = 1e-93
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Frame = +3
Query: 1155 EISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTA 1334
E+ +IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T
Sbjct: 343 ELKEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTK 402
Query: 1335 K---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
+ I++ YYE L K FLE++ LPKL QE
Sbjct: 403 EIQTILKTYYEQLYANKLGNLEEMDTFLESHKLPKLEQE 441
>ref|XP_852055.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1402
Score = 202 bits (513), Expect(3) = 2e-84
Identities = 94/198 (47%), Positives = 138/198 (69%), Gaps = 12/198 (6%)
Frame = +3
Query: 258 PTVSCLQETHLRGKGTYRLKVREWGKLFHASGQDRKAGVALLISDKIEFKMKAIKKDKEG 437
P++ CLQETH R K TY LK++ W ++H++G +KAGVA+LISDK++F K + +D+EG
Sbjct: 154 PSICCLQETHFRQKDTYSLKIKGWRTIYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEG 213
Query: 438 HYLMTKGSI*EEDIIIINKYAPNIGASKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDR 617
HY++ KGSI +ED+ I+N YAPN+GA+KYI ++T +K +D NT+I+GDFN L+ DR
Sbjct: 214 HYIILKGSIQQEDLTILNIYAPNVGAAKYINQLLTKVKKYLDNNTLILGDFNLALSILDR 273
Query: 618 SSRHS------------RKVRLN*YFQDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLN 761
SS+H+ ++ ++ + EYTFF SAHGTFSRID+ILGHK+ LN
Sbjct: 274 SSKHNIFKETRALNDTLNQMDFTDIYRTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLN 333
Query: 762 KFKSIETISSVFSDHNGM 815
+++ I + +FSDHN +
Sbjct: 334 RYQKIGIVPCIFSDHNAL 351
Score = 100 bits (249), Expect(3) = 2e-84
Identities = 50/90 (55%), Positives = 71/90 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWD AKAVLRGK+
Sbjct: 359 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDTAKAVLRGKY 417
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQ 1108
AIQA ++K E++QI LT ++ ELEK++Q
Sbjct: 418 IAIQASIQKLERTQIQKLTLHIKELEKKKQ 447
Score = 51.6 bits (122), Expect(3) = 2e-84
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 12/99 (12%)
Frame = +3
Query: 1155 EISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTA 1334
E+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T
Sbjct: 465 ELNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTK 524
Query: 1335 K---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
+ I++ YYE L K FLE++ LPKL QE
Sbjct: 525 EIQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQE 563
>ref|XP_850691.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1196
Score = 266 bits (680), Expect = 4e-71
Identities = 165/458 (36%), Positives = 252/458 (55%), Gaps = 38/458 (8%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 1 MTLNSYLSIVTLNVNGLNDPIKRRRISDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 60
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H++G +KAGVA+LISDK++F K + +D+EGHY++ KGSI +ED+ I+N YAPN+GA
Sbjct: 61 IYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVGA 120
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDFN L+ DRSS+H S++ R +
Sbjct: 121 AKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKHNISKETRALNDTLDQMDFTDIY 180
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFS---------DHN- 809
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FS +HN
Sbjct: 181 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNK 240
Query: 810 --GMXXXXXXXXXXXXXXXXHLD*TTFYLKKISGSMRKPRRKLKNTW--RQMIMKTQPFK 977
G LK+ + ++N W + +++ +
Sbjct: 241 KFGRTSNTWRLRTILLKDKRVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIA 300
Query: 978 TSGMLQKQCLEGNSERYRPSSKKKKNLKSTI*PTT*MXXXXXXXXXXXXAEGGNHEDQEE 1157
+QK LE + K+ K I PT + E
Sbjct: 301 IQASIQK--LERTQIQKLTLHIKELEKKQQIDPTPKRRRELIKI-------------RAE 345
Query: 1158 ISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTAK 1337
+++IE ++T+E+ + + N+ + +++ KKTQIN+I NEKG+I+ +T +
Sbjct: 346 LNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKRKKTQINKIMNEKGQITTNTKE 405
Query: 1338 ---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
I++ YYE L K FLE++ LPKL QE
Sbjct: 406 IQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQE 443
Score = 104 bits (259), Expect = 3e-22
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWDAAKAVLRGK+
Sbjct: 240 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKY 298
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E++QI LT ++ ELEK++Q P
Sbjct: 299 IAIQASIQKLERTQIQKLTLHIKELEKKQQIDP 331
>ref|XP_854759.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1275
Score = 265 bits (678), Expect = 6e-71
Identities = 165/458 (36%), Positives = 251/458 (54%), Gaps = 38/458 (8%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 2 MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 61
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H+ G +KAGVA+LISDK++F K + +D+EGHY++ KGSI +ED+ I+N YAPN+GA
Sbjct: 62 IYHSKGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVGA 121
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDFN L+ DRSS+H S++ R +
Sbjct: 122 AKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKHNISKETRALNDTLDQMDFTDIY 181
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFS---------DHN- 809
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FS +HN
Sbjct: 182 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNK 241
Query: 810 --GMXXXXXXXXXXXXXXXXHLD*TTFYLKKISGSMRKPRRKLKNTW--RQMIMKTQPFK 977
G LK+ + ++N W + +++ +
Sbjct: 242 KFGRTSNTWRLRTILLKDKRVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIA 301
Query: 978 TSGMLQKQCLEGNSERYRPSSKKKKNLKSTI*PTT*MXXXXXXXXXXXXAEGGNHEDQEE 1157
+QK LE + K+ K I PT + E
Sbjct: 302 IQASIQK--LERTQIQKLTLHIKELEKKQQIDPTPKRRRELIKI-------------RAE 346
Query: 1158 ISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTAK 1337
+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T +
Sbjct: 347 LNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTKE 406
Query: 1338 ---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
I++ YYE L K FLE++ LPKL QE
Sbjct: 407 IQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQE 444
Score = 104 bits (259), Expect = 3e-22
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWDAAKAVLRGK+
Sbjct: 241 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKY 299
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E++QI LT ++ ELEK++Q P
Sbjct: 300 IAIQASIQKLERTQIQKLTLHIKELEKKQQIDP 332
>ref|XP_851979.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1275
Score = 264 bits (675), Expect = 1e-70
Identities = 164/458 (35%), Positives = 252/458 (55%), Gaps = 38/458 (8%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 2 MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 61
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H++G +KAGVA+LISDK++F K + +D+EGHY++ +GSI +ED+ I+N YAPN+GA
Sbjct: 62 IYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILQGSIQQEDLTILNIYAPNVGA 121
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDFN L+ DRSS+H S++ R +
Sbjct: 122 AKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKHNISKETRALNDTLDQMDFTDIY 181
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFS---------DHN- 809
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FS +HN
Sbjct: 182 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNK 241
Query: 810 --GMXXXXXXXXXXXXXXXXHLD*TTFYLKKISGSMRKPRRKLKNTW--RQMIMKTQPFK 977
G LK+ + ++N W + +++ +
Sbjct: 242 KFGRTSNTWRLRTILLKDKRVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIA 301
Query: 978 TSGMLQKQCLEGNSERYRPSSKKKKNLKSTI*PTT*MXXXXXXXXXXXXAEGGNHEDQEE 1157
+QK LE + K+ K I PT + E
Sbjct: 302 IQASIQK--LERTQIQKLTLHIKELEKKQQIDPTPKRRRELIKI-------------RAE 346
Query: 1158 ISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTAK 1337
+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T +
Sbjct: 347 LNEIETRRTVEQINKTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTKE 406
Query: 1338 ---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
I++ YYE L K FLE++ LPKL QE
Sbjct: 407 IQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQE 444
Score = 104 bits (259), Expect = 3e-22
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWDAAKAVLRGK+
Sbjct: 241 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKY 299
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E++QI LT ++ ELEK++Q P
Sbjct: 300 IAIQASIQKLERTQIQKLTLHIKELEKKQQIDP 332
>ref|XP_538066.2| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1275
Score = 263 bits (673), Expect = 2e-70
Identities = 162/458 (35%), Positives = 250/458 (54%), Gaps = 38/458 (8%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS+ T NVNGLN IKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 2 MTLNSYLSIATLNVNGLNDTIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 61
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H++G +KAGV +LISDK++F K + +D+EGHY++ KGSI +ED+ IIN YAPN+GA
Sbjct: 62 IYHSNGPQKKAGVTILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLRIINIYAPNVGA 121
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDF L+ DRSS+H S++ R +
Sbjct: 122 AKYINQLLTKVKKYLDNNTLILGDFKLALSILDRSSKHNISKETRALNDTLDQMDFTDIY 181
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFSDHNGMXXXXXXXX 839
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FSDHN +
Sbjct: 182 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNK 241
Query: 840 XXXXXXXXHLD*TTFY------------LKKISGSMRKPRRKLKNTW--RQMIMKTQPFK 977
T LK+ + ++N W + +++ +
Sbjct: 242 KFGRTSNTWRLRTILLKDKRVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIA 301
Query: 978 TSGMLQKQCLEGNSERYRPSSKKKKNLKSTI*PTT*MXXXXXXXXXXXXAEGGNHEDQEE 1157
+QK +EG + K+ K I PT + + E
Sbjct: 302 IQASIQK--VEGTQIQKLTLHIKELEKKQQIDPTHKRRRELI-------------KIRAE 346
Query: 1158 ISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTAK 1337
+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T +
Sbjct: 347 LNEIETRRTVEQINRTRNWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTKE 406
Query: 1338 ---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
I++ YYE L K FLE++ LP + QE
Sbjct: 407 IQTILQTYYEQLYANKLGNPEEMDAFLESHKLPTMEQE 444
Score = 103 bits (256), Expect = 6e-22
Identities = 52/93 (55%), Positives = 72/93 (77%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWDAAKAVLRGK+
Sbjct: 241 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKY 299
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E +QI LT ++ ELEK++Q P
Sbjct: 300 IAIQASIQKVEGTQIQKLTLHIKELEKKQQIDP 332
>ref|XP_850132.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1275
Score = 263 bits (671), Expect = 4e-70
Identities = 164/458 (35%), Positives = 251/458 (54%), Gaps = 38/458 (8%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 2 MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 61
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H++G +KAGVA+LISDK++F K + +D+EGHY++ KGSI +ED+ I+N YAPN+GA
Sbjct: 62 IYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVGA 121
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDFN L+ DRSS+ S++ R +
Sbjct: 122 AKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKQNISKETRALNDTLDQMDFTDIY 181
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFS---------DHN- 809
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FS +HN
Sbjct: 182 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNK 241
Query: 810 --GMXXXXXXXXXXXXXXXXHLD*TTFYLKKISGSMRKPRRKLKNTW--RQMIMKTQPFK 977
G LK+ + ++N W + +++ +
Sbjct: 242 KFGRTSNTWRLRTILLKDKRVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIA 301
Query: 978 TSGMLQKQCLEGNSERYRPSSKKKKNLKSTI*PTT*MXXXXXXXXXXXXAEGGNHEDQEE 1157
+QK LE + K+ K I PT + E
Sbjct: 302 IQASIQK--LERTQIQKLTLHIKELEKKQQIDPTPKRRRELIKI-------------RAE 346
Query: 1158 ISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTAK 1337
+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T +
Sbjct: 347 LNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTKE 406
Query: 1338 ---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
I++ YYE L K FLE++ LPKL QE
Sbjct: 407 IQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQE 444
Score = 104 bits (259), Expect = 3e-22
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWDAAKAVLRGK+
Sbjct: 241 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKY 299
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E++QI LT ++ ELEK++Q P
Sbjct: 300 IAIQASIQKLERTQIQKLTLHIKELEKKQQIDP 332
>ref|XP_536180.2| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1274
Score = 263 bits (671), Expect = 4e-70
Identities = 164/458 (35%), Positives = 251/458 (54%), Gaps = 38/458 (8%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 1 MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 60
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H++G +KAGVA+LISDK++F K + +D+EGHY++ KGSI +ED+ I+N YAPN+GA
Sbjct: 61 IYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVGA 120
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDFN L+ DRSS+ S++ R +
Sbjct: 121 AKYINQLLTKVKKYLDNNTLILGDFNLALSILDRSSKQNISKETRALNDTLDQMDFTDIY 180
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFS---------DHN- 809
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FS +HN
Sbjct: 181 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNK 240
Query: 810 --GMXXXXXXXXXXXXXXXXHLD*TTFYLKKISGSMRKPRRKLKNTW--RQMIMKTQPFK 977
G LK+ + ++N W + +++ +
Sbjct: 241 KFGRTSNTWRLRTILLKDKRVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIA 300
Query: 978 TSGMLQKQCLEGNSERYRPSSKKKKNLKSTI*PTT*MXXXXXXXXXXXXAEGGNHEDQEE 1157
+QK LE + K+ K I PT + E
Sbjct: 301 IQASIQK--LERTQIQKLTLHIKELEKKQQIDPTPKRRRELIKI-------------RAE 345
Query: 1158 ISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTAK 1337
+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T +
Sbjct: 346 LNEIETRRTVEEINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTKE 405
Query: 1338 ---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
I++ YYE L K FLE++ LPKL QE
Sbjct: 406 IQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQE 443
Score = 104 bits (259), Expect = 3e-22
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWDAAKAVLRGK+
Sbjct: 240 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKY 298
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E++QI LT ++ ELEK++Q P
Sbjct: 299 IAIQASIQKLERTQIQKLTLHIKELEKKQQIDP 331
>ref|XP_853568.1| PREDICTED: similar to LINE-1 reverse transcriptase homolog [Canis
familiaris]
Length = 1275
Score = 263 bits (671), Expect = 4e-70
Identities = 164/458 (35%), Positives = 251/458 (54%), Gaps = 38/458 (8%)
Frame = +3
Query: 156 MAINTYLSVITSNVNGLNAPIKRHRMADWIQKQEPTVSCLQETHLRGKGTYRLKVREWGK 335
M +N+YLS++T NVNGLN PIKR R++DWI+KQ+P++ CLQETH R K TY LK++ W
Sbjct: 2 MTLNSYLSIVTLNVNGLNDPIKRRRVSDWIKKQDPSICCLQETHFRQKDTYSLKIKGWRT 61
Query: 336 LFHASGQDRKAGVALLISDKIEFKMKAIKKDKEGHYLMTKGSI*EEDIIIINKYAPNIGA 515
++H++G +KAGVA+LISDK++F K + +D+EGHY++ KGSI +ED+ I+N YAPN+GA
Sbjct: 62 IYHSNGPQKKAGVAILISDKLKFTPKTVVRDEEGHYIILKGSIQQEDLTILNIYAPNVGA 121
Query: 516 SKYIQ*IITDIKGEIDGNTIIVGDFNTLLTSTDRSSRH--SRKVR----------LN*YF 659
+KYI ++T +K +D NT+I+GDFN L+ DRSS+ S++ R +
Sbjct: 122 AKYINRLLTKVKKYLDNNTLILGDFNLALSILDRSSKQNISKETRALNDTLDQMDFTDIY 181
Query: 660 QDIISKKPEYTFF*SAHGTFSRIDYILGHKTKLNKFKSIETISSVFS---------DHN- 809
+ + EYTFF SAHGTFSRID+ILGHK+ LN+++ I + +FS +HN
Sbjct: 182 RTLHPNSTEYTFFSSAHGTFSRIDHILGHKSGLNRYQKIGIVPCIFSDHNALKLELNHNK 241
Query: 810 --GMXXXXXXXXXXXXXXXXHLD*TTFYLKKISGSMRKPRRKLKNTW--RQMIMKTQPFK 977
G LK+ + ++N W + +++ +
Sbjct: 242 KFGRTSNTWRLRTILLKDKRVNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKYIA 301
Query: 978 TSGMLQKQCLEGNSERYRPSSKKKKNLKSTI*PTT*MXXXXXXXXXXXXAEGGNHEDQEE 1157
+QK LE + K+ K I PT + E
Sbjct: 302 IQASIQK--LERTQIQKLTLHIKELEKKQQIDPTPKRRRELIKI-------------RAE 346
Query: 1158 ISKIEIQKTIEKNQ*NQELVL*KGNQN*QTSGWTHQEEEKKTQINRIRNEKGEISMDTAK 1337
+++IE ++T+E+ + + N+ + +++ +KTQIN+I NEKGEI+ +T +
Sbjct: 347 LNEIETRRTVEQINRTRSWFFERINKIDKPLASLIKKKREKTQINKIMNEKGEITTNTKE 406
Query: 1338 ---IMREYYE*LILPK---------FLETYSLPKLNQE 1415
I++ YYE L K FLE++ LPKL QE
Sbjct: 407 IQTILKTYYEQLYANKLGNLEEMDAFLESHKLPKLEQE 444
Score = 104 bits (259), Expect = 3e-22
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = +2
Query: 839 KK*EKKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKAVLRGKF 1018
KK + T+RL ILLK + VN+E K+E+K+++ETN+NE+TT+QNLWDAAKAVLRGK+
Sbjct: 241 KKFGRTSNTWRLRTILLKDKR-VNQEIKEELKRFMETNENEDTTVQNLWDAAKAVLRGKY 299
Query: 1019 RAIQAFLKKEEKSQINNLTHNLNELEKEEQTKP 1117
AIQA ++K E++QI LT ++ ELEK++Q P
Sbjct: 300 IAIQASIQKLERTQIQKLTLHIKELEKKQQIDP 332
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,149,374
Number of Sequences: 33732
Number of extensions: 911821
Number of successful extensions: 2883
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2742
length of database: 19,266,565
effective HSP length: 107
effective length of database: 15,657,241
effective search space used: 5918437098
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611C-001704
(1457 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004189.1| hypothetical protein LOC434320 [Mus musculus] 45 4e-06
>ref|NP_001004189.1| hypothetical protein LOC434320 [Mus musculus]
Length = 115
Score = 45.1 bits (105), Expect(2) = 4e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 851 KKMTTFRLNNILLKKNQWVNEETKKEIKKYLETNDNENTTIQNLWDAAKA 1000
K T+++ N LL + V E KKEIK +LE N+NE TT NLWD KA
Sbjct: 66 KPTFTWKMINTLLN-DTLVKEGIKKEIKDFLEFNENEVTTYPNLWDTMKA 114
Score = 25.4 bits (54), Expect(2) = 4e-06
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 756 LNKFKSIETISSVFSDHNGM 815
LN++K++E + SDH+G+
Sbjct: 35 LNRYKNMEIFQCILSDHHGI 54
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,172,161
Number of Sequences: 45328
Number of extensions: 1071081
Number of successful extensions: 2881
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 2642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2874
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 6395302242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)