Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000083
(1684 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209214.1| NADH dehydrogenase subunit 4 [Bos taurus]. 426 e-128
Alignment gi|YP_209213.1| NADH dehydrogenase subunit 4L [Bos taurus]. 99 9e-21
>ref|YP_209214.1| NADH dehydrogenase subunit 4 [Bos taurus].
Length = 459
Score = 426 bits (1095), Expect(2) = e-128
Identities = 232/365 (63%), Positives = 264/365 (72%)
Frame = +1
Query: 367 NATVHXXXXXXXXXXXXNQLGENSLNFSLTFFSDXXXXXXXXXXXXXXXXXXXXSQSHLS 546
N+T H NQ G+NSLNFSL FFSD SQ HLS
Sbjct: 26 NSTAHSLLISFTSLLLMNQFGDNSLNFSLLFFSDSLSTPLLILTMWLLPLMLMASQHHLS 85
Query: 547 KEXXXXXXXXXXXXXXXXXXXXXXXXATELILFYILFEATLVPTLIIITR*GNQTERLNA 726
KE A ELILFYILFEATLVPTLIIITR GNQTERLNA
Sbjct: 86 KENLTRKKLFITMLISLQLFLIMTFTAMELILFYILFEATLVPTLIIITRWGNQTERLNA 145
Query: 727 GLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHY*SHPLSNS*SNXXXXXXXXXXXXV 906
GLYFLFYTLAGSLPLLVAL+YIQNT GSLNFL++ Y P+ NS SN V
Sbjct: 146 GLYFLFYTLAGSLPLLVALIYIQNTVGSLNFLMLQYWVQPVHNSWSNVFMWLACMMAFMV 205
Query: 907 KIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLMLX 1086
K+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG++RIT ILNP+T+++AYPF+ML
Sbjct: 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMLRITLILNPMTDFMAYPFIMLS 265
Query: 1087 XXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSSI 1266
CLRQTDLKSLIAYSSVSH+ALVIVAI+IQTP S++GATAL+IAHGLTSS+
Sbjct: 266 LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSYMGATALMIAHGLTSSM 325
Query: 1267 LFCLANTNYERVHSRTIILARGLQTLLPLIXT**LIASLTNLALPPSINLIGRIFIITAS 1446
LFCLAN+NYER+HSRT+ILARGLQTLLPL+ T L+ASLTNLALPP+INLIG +F++ ++
Sbjct: 326 LFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVVMST 385
Query: 1447 FS*SN 1461
FS SN
Sbjct: 386 FSWSN 390
Score = 53.1 bits (126), Expect(2) = e-128
Identities = 29/49 (59%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 1500 AFYSLYLLITNPRGKYPXHINXIQPSFTRETP-SKPYYSTLLLLDLNPK 1643
A YSLY+LI RGKY HIN I PSFTRE + LLLL LNPK
Sbjct: 404 ALYSLYMLIMTQRGKYTYHINNISPSFTRENALMSLHILPLLLLTLNPK 452
>ref|YP_209213.1| NADH dehydrogenase subunit 4L [Bos taurus].
Length = 98
Score = 99.4 bits (246), Expect = 9e-21
Identities = 50/69 (72%), Positives = 56/69 (81%)
Frame = +2
Query: 65 YRSHLISSLLCLEGMXXXXXXXXXXXXXNTHFTLANIIPIILLVFAACEAALGLSLLVIV 244
YRSHL+SSLLCLEGM N+HFTLA+++PIILLVFAACEAALGLSLLV+V
Sbjct: 22 YRSHLMSSLLCLEGMMLSLFVMAALTILNSHFTLASMMPIILLVFAACEAALGLSLLVMV 81
Query: 245 SNTYGTDYV 271
SNTYGTDYV
Sbjct: 82 SNTYGTDYV 90
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,747,257
Number of extensions: 981003
Number of successful extensions: 2513
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2482
Number of HSP's successfully gapped: 3
Length of query: 561
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 454
Effective length of database: 14,140,958
Effective search space: 6419994932
Effective search space used: 6419994932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000083
(1684 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008480.1| NADH dehydrogenase subunit 4 [Canis lupus famil... 413 e-124
Alignment gi|NP_008479.1| NADH dehydrogenase subunit 4L [Canis lupus fami... 96 8e-20
>ref|NP_008480.1| NADH dehydrogenase subunit 4 [Canis lupus familiaris].
Length = 459
Score = 413 bits (1061), Expect(2) = e-124
Identities = 227/365 (62%), Positives = 258/365 (70%)
Frame = +1
Query: 367 NATVHXXXXXXXXXXXXNQLGENSLNFSLTFFSDXXXXXXXXXXXXXXXXXXXXSQSHLS 546
N T + NQ +N+LN SL FFSD SQ HLS
Sbjct: 26 NTTTYGLLISLISLFYLNQPNDNTLNSSLMFFSDSLSAPLLALTTWLLPLMLMASQHHLS 85
Query: 547 KEXXXXXXXXXXXXXXXXXXXXXXXXATELILFYILFEATLVPTLIIITR*GNQTERLNA 726
KE A+ELI FYILFEATL+PTLIIITR GNQTERLNA
Sbjct: 86 KEPLTRKKLYISMLILLQLFLIMTFTASELIFFYILFEATLIPTLIIITRWGNQTERLNA 145
Query: 727 GLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHY*SHPLSNS*SNXXXXXXXXXXXXV 906
GLYFLFYTL GSLPLLVAL+YI N GSLNFL+I Y PL NS SN V
Sbjct: 146 GLYFLFYTLMGSLPLLVALLYIHNFMGSLNFLMIQYWIQPLPNSWSNIFLWLACMMAFMV 205
Query: 907 KIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLMLX 1086
K+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG+MRITT+LNPLTN++AYPF+ML
Sbjct: 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTLLNPLTNFMAYPFMMLS 265
Query: 1087 XXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSSI 1266
CLRQTDLKSLIAYSSVSH+ALVIVA++IQTP S++GATAL+IAHGLTSS+
Sbjct: 266 LWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAVLIQTPWSYMGATALMIAHGLTSSM 325
Query: 1267 LFCLANTNYERVHSRTIILARGLQTLLPLIXT**LIASLTNLALPPSINLIGRIFIITAS 1446
LFCLAN+NYER+HSRT+ILARGLQTLLPL+ L+ASLTNLALPP+INLIG +F++ +S
Sbjct: 326 LFCLANSNYERIHSRTMILARGLQTLLPLMAAWWLLASLTNLALPPTINLIGELFVVMSS 385
Query: 1447 FS*SN 1461
FS SN
Sbjct: 386 FSWSN 390
Score = 53.9 bits (128), Expect(2) = e-124
Identities = 29/49 (59%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 1500 AFYSLYLLITNPRGKYPXHINXIQPSFTRETPSKP-YYSTLLLLDLNPK 1643
A YSLY+LIT RGKY HI I+PSFTRE + LLLL LNPK
Sbjct: 404 ALYSLYMLITTQRGKYSHHIKNIKPSFTRENALMTLHLLPLLLLSLNPK 452
>ref|NP_008479.1| NADH dehydrogenase subunit 4L [Canis lupus familiaris].
Length = 98
Score = 96.3 bits (238), Expect = 8e-20
Identities = 48/69 (69%), Positives = 54/69 (78%)
Frame = +2
Query: 65 YRSHLISSLLCLEGMXXXXXXXXXXXXXNTHFTLANIIPIILLVFAACEAALGLSLLVIV 244
YRSHL+SSLLCLEGM N H TLA+++PI+LLVFAACEAALGLSLLV+V
Sbjct: 22 YRSHLMSSLLCLEGMMLSLFVMMSVTILNNHLTLASMMPIVLLVFAACEAALGLSLLVMV 81
Query: 245 SNTYGTDYV 271
SNTYGTDYV
Sbjct: 82 SNTYGTDYV 90
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,743,477
Number of extensions: 1001767
Number of successful extensions: 2477
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2434
Number of HSP's successfully gapped: 3
Length of query: 561
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 453
Effective length of database: 15,274,216
Effective search space: 6919219848
Effective search space used: 6919219848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000083
(1684 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024035.1| NADH dehydrogenase subunit 4 [Homo sapiens]. 368 e-108
Alignment gi|YP_003024034.1| NADH dehydrogenase subunit 4L [Homo sapiens]. 91 4e-18
>ref|YP_003024035.1| NADH dehydrogenase subunit 4 [Homo sapiens].
Length = 459
Score = 368 bits (945), Expect(2) = e-108
Identities = 203/365 (55%), Positives = 238/365 (65%)
Frame = +1
Query: 367 NATVHXXXXXXXXXXXXNQLGENSLNFSLTFFSDXXXXXXXXXXXXXXXXXXXXSQSHLS 546
N T H NQ+ N + S TF SD SQ HLS
Sbjct: 26 NTTTHSLIISIIPLLFFNQINNNLFSCSPTFSSDPLTTPLLMLTTWLLPLTIMASQRHLS 85
Query: 547 KEXXXXXXXXXXXXXXXXXXXXXXXXATELILFYILFEATLVPTLIIITR*GNQTERLNA 726
E ATELI+FYI FE TL+PTL IITR GNQ ERLNA
Sbjct: 86 SEPLSRKKLYLSMLISLQISLIMTFTATELIMFYIFFETTLIPTLAIITRWGNQPERLNA 145
Query: 727 GLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHY*SHPLSNS*SNXXXXXXXXXXXXV 906
G YFLFYTL GSLPLL+AL+Y NT GSLN L++ + LSNS +N V
Sbjct: 146 GTYFLFYTLVGSLPLLIALIYTHNTLGSLNILLLTLTAQELSNSWANNLMWLAYTMAFMV 205
Query: 907 KIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLMLX 1086
K+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG+MR+T ILNPLT ++AYPFL+L
Sbjct: 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPLTKHMAYPFLVLS 265
Query: 1087 XXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSSI 1266
CLRQTDLKSLIAYSS+SH+ALV+ AI+IQTP SF GA L+IAHGLTSS+
Sbjct: 266 LWGMIMTSSICLRQTDLKSLIAYSSISHMALVVTAILIQTPWSFTGAVILMIAHGLTSSL 325
Query: 1267 LFCLANTNYERVHSRTIILARGLQTLLPLIXT**LIASLTNLALPPSINLIGRIFIITAS 1446
LFCLAN+NYER HSR +IL++GLQTLLPL+ L+ASL NLALPP+INL+G + ++ +
Sbjct: 326 LFCLANSNYERTHSRIMILSQGLQTLLPLMAFWWLLASLANLALPPTINLLGELSVLVTT 385
Query: 1447 FS*SN 1461
FS SN
Sbjct: 386 FSWSN 390
Score = 43.5 bits (101), Expect(2) = e-108
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 1500 AFYSLYLLITNPRGKYPXHINXIQPSFTRE-TPSKPYYSTLLLLDLNP 1640
A YSLY+ T G HIN ++PSFTRE T + S +LLL LNP
Sbjct: 404 ALYSLYMFTTTQWGSLTHHINNMKPSFTRENTLMFMHLSPILLLSLNP 451
>ref|YP_003024034.1| NADH dehydrogenase subunit 4L [Homo sapiens].
Length = 98
Score = 90.5 bits (223), Expect = 4e-18
Identities = 45/69 (65%), Positives = 51/69 (73%)
Frame = +2
Query: 65 YRSHLISSLLCLEGMXXXXXXXXXXXXXNTHFTLANIIPIILLVFAACEAALGLSLLVIV 244
YRSHL+SSLLCLEGM NTH LANI+PI +LVFAACEAA+GL+LLV +
Sbjct: 22 YRSHLMSSLLCLEGMMLSLFIMATLMTLNTHSLLANIVPIAMLVFAACEAAVGLALLVSI 81
Query: 245 SNTYGTDYV 271
SNTYG DYV
Sbjct: 82 SNTYGLDYV 90
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,083,628
Number of extensions: 1001691
Number of successful extensions: 2568
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2558
Number of HSP's successfully gapped: 3
Length of query: 561
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 453
Effective length of database: 14,737,052
Effective search space: 6675884556
Effective search space used: 6675884556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000083
(1684 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904337.1| NADH dehydrogenase subunit 4 [Mus musculus]. 371 e-107
Alignment gi|NP_904336.1| NADH dehydrogenase subunit 4L [Mus musculus]. 77 4e-14
Alignment gi|NP_904338.1| NADH dehydrogenase subunit 5 [Mus musculus]. 50 7e-06
>ref|NP_904337.1| NADH dehydrogenase subunit 4 [Mus musculus].
Length = 459
Score = 371 bits (952), Expect(2) = e-107
Identities = 200/347 (57%), Positives = 242/347 (69%)
Frame = +1
Query: 421 QLGENSLNFSLTFFSDXXXXXXXXXXXXXXXXXXXXSQSHLSKEXXXXXXXXXXXXXXXX 600
Q EN NFS F SD SQ+HL K+
Sbjct: 44 QTDENYKNFSNMFSSDPLSTPLIILTAWLLPLMLMASQNHLKKDNNVLQKLYISMLISLQ 103
Query: 601 XXXXXXXXATELILFYILFEATLVPTLIIITR*GNQTERLNAGLYFLFYTLAGSLPLLVA 780
ATELI+FYILFEATL+PTLIIITR GNQTERLNAG+YFLFYTL GS+PLL+A
Sbjct: 104 ILLIMTFSATELIMFYILFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLIGSIPLLIA 163
Query: 781 LVYIQNTTGSLNFLIIHY*SHPLSNS*SNXXXXXXXXXXXXVKIPLYGLHL*LPKAHVEA 960
L+ IQN G+LN +I+ + +H L S SN +K+PLYG+HL LPKAHVEA
Sbjct: 164 LILIQNHVGTLNLMILSFTTHTLDASWSNNLLWLACMMAFLIKMPLYGVHLWLPKAHVEA 223
Query: 961 PIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLMLXXXXXXXXXXXCLRQTDLK 1140
PIAGS++LAA+LLKLG YG++RI+ IL+PLT Y+AYPF++L CLRQTDLK
Sbjct: 224 PIAGSMILAAILLKLGSYGMIRISIILDPLTKYMAYPFILLSLWGMIMTSSICLRQTDLK 283
Query: 1141 SLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSSILFCLANTNYERVHSRTII 1320
SLIAYSSVSH+ALVI +I+IQTP SF+GAT L+IAHGLTSS+LFCLAN+NYER+HSRT+I
Sbjct: 284 SLIAYSSVSHMALVIASIMIQTPWSFMGATMLMIAHGLTSSLLFCLANSNYERIHSRTMI 343
Query: 1321 LARGLQTLLPLIXT**LIASLTNLALPPSINLIGRIFIITASFS*SN 1461
+ARGLQ + PL+ T L+ASL NLALPPSINL+G +FI + FS SN
Sbjct: 344 MARGLQMVFPLMATWWLMASLANLALPPSINLMGELFITMSLFSWSN 390
Score = 39.3 bits (90), Expect(2) = e-107
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 1506 YSLYLLITNPRGKYPXHINXIQPSFTRE-TPSKPYYSTLLLLDLNPK 1643
YS+Y++IT RGK H+ +QPS TRE T + L+LL +PK
Sbjct: 406 YSMYMIITTQRGKLTNHMINLQPSHTRELTLMALHMIPLILLTTSPK 452
>ref|NP_904336.1| NADH dehydrogenase subunit 4L [Mus musculus].
Length = 98
Score = 77.0 bits (188), Expect = 4e-14
Identities = 40/69 (57%), Positives = 49/69 (71%)
Frame = +2
Query: 65 YRSHLISSLLCLEGMXXXXXXXXXXXXXNTHFTLANIIPIILLVFAACEAALGLSLLVIV 244
+RSHL+S+LLCLEGM N++ + IPI +LVFAACEAA+GL+LLV V
Sbjct: 22 FRSHLMSTLLCLEGMVLSLFIMTSVTSLNSNSMSSMPIPITILVFAACEAAVGLALLVKV 81
Query: 245 SNTYGTDYV 271
SNTYGTDYV
Sbjct: 82 SNTYGTDYV 90
>ref|NP_904338.1| NADH dehydrogenase subunit 5 [Mus musculus].
Length = 607
Score = 49.7 bits (117), Expect = 7e-06
Identities = 59/274 (21%), Positives = 106/274 (38%), Gaps = 1/274 (0%)
Frame = +1
Query: 625 ATELILFYILFEATLVPTLIIITR*GNQTERLNAGLYFLFYTLAGSLPLLVALVYIQNTT 804
A + +I +E + + ++I +T+ A L + Y G + ++A+V+
Sbjct: 134 ANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILAMVWFSLNM 193
Query: 805 GSLNFLIIHY*SHPLSNS*SNXXXXXXXXXXXXVKIPLYGLHL*LPKAHVEAPIAGSIVL 984
S I + SN+ N K +GLH LP A +E P S +L
Sbjct: 194 NSWELQQIMF-----SNNNDNLIPLMGLLIAATGKSAQFGLHPWLPSA-MEGPTPVSALL 247
Query: 985 AAVLLKLGGYGIMRITTILNPLTNYIAYPFLMLXXXXXXXXXXXCLRQTDLKSLIAYSSV 1164
+ + + G ++ L N+I L L L Q D+K +IA+S+
Sbjct: 248 HSSTMVVAGIFLLVRFHPLTTNNNFILTTMLCLGALTTLFTAICALTQNDIKKIIAFSTS 307
Query: 1165 SHIALVIVAIIIQTP*SFIGATALIIAHGLTSSILF-CLANTNYERVHSRTIILARGLQT 1341
S + L++V + + P A I H ++LF C + + + I +
Sbjct: 308 SQLGLMMVTLGMNQPHL---AFLHICTHAFFKAMLFMCSGSIIHSLADEQDIRKMGNITK 364
Query: 1342 LLPLIXT**LIASLTNLALPPSINLIGRIFIITA 1443
++P + +I SL +P + II A
Sbjct: 365 IMPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEA 398
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,453,176
Number of extensions: 867242
Number of successful extensions: 2456
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2444
Number of HSP's successfully gapped: 4
Length of query: 561
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 454
Effective length of database: 12,403,707
Effective search space: 5631282978
Effective search space used: 5631282978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000083
(1684 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008643.1| NADH dehydrogenase subunit 4 [Sus scrofa]. 471 e-142
Alignment gi|NP_008642.1| NADH dehydrogenase subunit 4L [Sus scrofa]. 102 5e-22
>ref|NP_008643.1| NADH dehydrogenase subunit 4 [Sus scrofa].
Length = 459
Score = 471 bits (1212), Expect(2) = e-142
Identities = 263/365 (72%), Positives = 276/365 (75%)
Frame = +1
Query: 367 NATVHXXXXXXXXXXXXNQLGENSLNFSLTFFSDXXXXXXXXXXXXXXXXXXXXSQSHLS 546
NATVH NQLGENSLNFSLTFFSD SQSHLS
Sbjct: 26 NATVHSLLISLISLSLLNQLGENSLNFSLTFFSDSLSAPLLVLTTWLLPLMLMASQSHLS 85
Query: 547 KEXXXXXXXXXXXXXXXXXXXXXXXXATELILFYILFEATLVPTLIIITR*GNQTERLNA 726
KE ATELILFYILFEATLVPTLIIITR GNQTERLNA
Sbjct: 86 KETTTRKKLYITMLILLQLFLIMTFTATELILFYILFEATLVPTLIIITRWGNQTERLNA 145
Query: 727 GLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHY*SHPLSNS*SNXXXXXXXXXXXXV 906
GLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHY SHPLSNS SN V
Sbjct: 146 GLYFLFYTLAGSLPLLVALVYIQNTTGSLNFLIIHYWSHPLSNSWSNIFMWLACIMAFMV 205
Query: 907 KIPLYGLHL*LPKAHVEAPIAGSIVLAAVLLKLGGYGIMRITTILNPLTNYIAYPFLMLX 1086
K+PLYGLHL LPKAHVEAPIAGS+VLAAVLLKLGGYG+MRITTILNPLTNY+AYPFLML
Sbjct: 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITTILNPLTNYMAYPFLMLS 265
Query: 1087 XXXXXXXXXXCLRQTDLKSLIAYSSVSHIALVIVAIIIQTP*SFIGATALIIAHGLTSSI 1266
CLRQTDLKSLIAYSSVSH+ALVIVAI+IQTP SF+GATAL+IAHGLTSS+
Sbjct: 266 MWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAIMIQTPWSFMGATALMIAHGLTSSM 325
Query: 1267 LFCLANTNYERVHSRTIILARGLQTLLPLIXT**LIASLTNLALPPSINLIGRIFIITAS 1446
LFCLANTNYERVHSRT+ILARGLQTLLPL+ T L+ASLTNLALPPSINLIG +FIITAS
Sbjct: 326 LFCLANTNYERVHSRTMILARGLQTLLPLMATWWLMASLTNLALPPSINLIGELFIITAS 385
Query: 1447 FS*SN 1461
FS SN
Sbjct: 386 FSWSN 390
Score = 52.8 bits (125), Expect(2) = e-142
Identities = 29/49 (59%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 1500 AFYSLYLLITNPRGKYPXHINXIQPSFTRETPSKP-YYSTLLLLDLNPK 1643
A YSLY+LIT RGKY HIN I+ SFTRE + LLLL LNPK
Sbjct: 404 ALYSLYMLITTQRGKYTHHINNIKASFTRENALMALHILPLLLLTLNPK 452
>ref|NP_008642.1| NADH dehydrogenase subunit 4L [Sus scrofa].
Length = 98
Score = 102 bits (255), Expect = 5e-22
Identities = 52/69 (75%), Positives = 56/69 (81%)
Frame = +2
Query: 65 YRSHLISSLLCLEGMXXXXXXXXXXXXXNTHFTLANIIPIILLVFAACEAALGLSLLVIV 244
YRSHL+SSLLCLEGM NTHFTLAN++PIILLVFAACEAALGLSLLV+V
Sbjct: 22 YRSHLMSSLLCLEGMMLSLFIMSTLIILNTHFTLANMMPIILLVFAACEAALGLSLLVMV 81
Query: 245 SNTYGTDYV 271
SNTYGTDYV
Sbjct: 82 SNTYGTDYV 90
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,420,886
Number of extensions: 639355
Number of successful extensions: 1514
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1505
Number of HSP's successfully gapped: 3
Length of query: 561
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 457
Effective length of database: 8,754,644
Effective search space: 4000872308
Effective search space used: 4000872308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000083
(1684 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1740 0.0
Sscrofa_Chr17 470 e-129
Sscrofa_Chr16 198 7e-48
Sscrofa_Chr14 188 7e-45
Sscrofa_Chr05 174 1e-40
Sscrofa_Chr18 143 4e-31
Sscrofa_Chr06 113 3e-22
Sscrofa_ChrX 90 5e-15
Sscrofa_Chr13 64 3e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 1740 bits (878), Expect = 0.0
Identities = 1414/1591 (88%), Gaps = 6/1591 (0%)
Strand = Plus / Plus
Query: 2 gtgccattagtatatataaacatcattatagcattcgcgatcgcccttgcagggttactt 61
|||||||||||||| |||||||| ||| |||||||||| |||||||| ||| ||||
Sbjct: 120056497 gtgccattagtatacataaacattattgtagcattcgcagtcgcccttataggactactc 120056556
Query: 62 atatatcgatctcacttaatatcttcactactatgcctagaaggaatgatactatcacta 121
||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct: 120056557 atataccgatctcacttaatatcttcactactgtgcctagagggaatgatattatcactt 120056616
Query: 122 ttcatcatatcgactctaattatcctaaacacacacttcaccctagctaacataataccc 181
||||||||||| ||| |||| || ||| |||||||||||||||||||| |||||||||
Sbjct: 120056617 ttcatcatatctactttaatcgtcttaagcacacacttcaccctagctagcataatacct 120056676
Query: 182 attattttactagtgtttgcagcctgcgaagctgcactaggcctgtcactactagtaata 241
||||||||| |||| |||||||||||||| || ||||| || |||||| |||||||||||
Sbjct: 120056677 attattttattagtatttgcagcctgcgaggccgcactcggtctgtcattactagtaata 120056736
Query: 242 gtatccaacacatacggtaccgattacgtccaaaacttaaaccttttacaatgctaaaaa 301
||||| || ||||| ||||| |||||| ||||||| |||| || |||||||||||||||
Sbjct: 120056737 gtatctaatacatatggtacggattacatccaaaatctaaatctcttacaatgctaaaaa 120056796
Query: 302 ttattatcccaacaacaatactactacccataacatgaatatctaaacacaacataatct 361
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 120056797 ttattatcccaacaacaatactactacccataacatgaatatctaaacacagtataatct 120056856
Query: 362 gaatcaatgcaacagtacatagtctcctcattagcctgatcagtctatccctactaaacc 421
|||| ||||||||||||||||| ||||| |||||||| || || || |||||| ||||||
Sbjct: 120056857 gaattaatgcaacagtacatagcctccttattagcctaattagcctctccctattaaacc 120056916
Query: 422 aactaggcgaaaacagccttaatttttccttaacattcttctccgactcactatcagcac 481
||||| ||| ||||| |||||||| || | ||||| |||||||||||||||||| ||
Sbjct: 120056917 aactaaacgacaacagtcttaatttctctctgacatttttctccgactcactatcaatac 120056976
Query: 482 ccctactagttctaaccacatgactcctcccccttatactaatagctagccaatctcacc 541
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct: 120056977 ccctactagttctaaccatatgactcctcccccttatactaatagctagtcaatcccact 120057036
Query: 542 tatcaaaagaaaccacaacccgnnnnnnnctatatattaccatactaatcctactacaac 601
||||||||||||| |||||||| ||||| || || |||||||||||||||||||
Sbjct: 120057037 tatcaaaagaaacaacaacccgaaaaaaactatacatcactatactaatcctactacaac 120057096
Query: 602 tattcctaattataaccttcaccgccaccgaactaatcctattctatatcctattcgaag 661
|||||||||| ||||||||||| ||||||||||||||| |||| ||||| ||||||||||
Sbjct: 120057097 tattcctaatcataaccttcactgccaccgaactaatcttattttatattctattcgaag 120057156
Query: 662 caacactagtacccacactaattatcatcacacgctgaggaaaccaaacagaacgactca 721
|||||||||| |||||| ||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 120057157 caacactagtgcccacattaattattattacacgctgaggaaatcaaacagaacgactca 120057216
Query: 722 atgcaggactttatttcctattctacaccctagcaggatccctaccactgctagtagcac 781
|||||||||| |||||| ||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 120057217 atgcaggactgtatttcttattctataccctagcaggatccctaccactactggtagcac 120057276
Query: 782 tagtttatatccaaaataccacaggctcactaaacttcttaattatccattactgatccc 841
|||| || || |||||||| |||||||||||||| ||||||||||| || ||||| |||
Sbjct: 120057277 tagtctacattcaaaatactacaggctcactaaatttcttaattattcactactgggccc 120057336
Query: 842 acccattatccaactcttgatcaaacatttttatatgattagcatgcatcatagccttca 901
||||| || | || |||||||||| |||||||||||| ||||||||||||| |||||||
Sbjct: 120057337 acccactacctaatacttgatcaaatatttttatatgactagcatgcatcatggccttca 120057396
Query: 902 tagtaaaaatacctctgtacggactccatctttgactgccaaaagcccatgtagaagccc 961
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 120057397 tagtaaaaataccactgtatggactccacctttgactgccaaaagcccatgtagaagccc 120057456
Query: 962 ccattgcaggttcaatagtacttgcagccgtactgctaaaactcggaggctatggcataa 1021
| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 120057457 ctattgcaggttcaatagtacttgcagccgtactgctaaagcttggaggctatggtataa 120057516
Query: 1022 tgcgaatcactactattctaaacccactaacaaactacatagcctatccattcctcatgc 1081
| ||||| || |||||||||||||||||||||||||||||||| || ||||| || || |
Sbjct: 120057517 tacgaattaccactattctaaacccactaacaaactacatagcttacccatttcttatac 120057576
Query: 1082 tttccatatgaggcataatcataaccagctctatctgcttacgtcaaaccgacctaaaat 1141
|||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 120057577 tttccatatggggcataattataaccagctctatttgcttacgtcaaactgacctaaaat 120057636
Query: 1142 ccttaatcgcctattcatcagtaagtcatatagcacttgtaatcgtagcaatcataattc 1201
|| |||| || || ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 120057637 ccctaattgcttactcatcagtaagccatatagcacttgtaattgtagcaatcataattc 120057696
Query: 1202 aaaccccctgaagcttcataggggccacagctctcataattgcccacggactaacatcct 1261
|||||||| ||||||||||||| ||||||||||| ||||| ||||||||| |||||||||
Sbjct: 120057697 aaaccccccgaagcttcataggagccacagctcttataatcgcccacggattaacatcct 120057756
Query: 1262 ccatactattctgcctagccaacactaactatgaacgagtacacagccgaaccataatcc 1321
||||||||||||||||||| || |||||||| ||||||||||| || ||||| |||||||
Sbjct: 120057757 ccatactattctgcctagctaatactaactacgaacgagtacatagtcgaactataatcc 120057816
Query: 1322 tggcccgaggactgcaaacactcctaccactcatagncacatgatgactaatagcaagcc 1381
| ||||||||||| |||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct: 120057817 tagcccgaggactacaaacattcctaccacttatagcaacatgatgactaatagcaagcc 120057876
Query: 1382 tcacaaacctagccctacccccatccatcaatctaatcggaagaatatttatcatcacag 1441
||||||| |||||||||||||||||||||||| |||| ||| | |||| ||||| ||||
Sbjct: 120057877 tcacaaatctagccctacccccatccatcaatttaattggagaattattcatcattacag 120057936
Query: 1442 catcattttcatgatccaacatcacaattattctcataggaataaacataataatta-ag 1500
|||||||||| ||||||||||||||||||||||| |||||| |||| ||| |||||| ||
Sbjct: 120057937 catcattttcctgatccaacatcacaattattcttataggactaaatatactaattacag 120057996
Query: 1501 ccttctactctctctacttactaattactaac-ccacgaggaaaatacccccancacatt 1559
|| |||||||||||||| ||||||||| |||| | |||||||||||| |||| | ||||
Sbjct: 120057997 ccctctactctctctacatactaatta-taacacaacgaggaaaatatacccaccccatt 120058055
Query: 1560 aacnacatccaaccctcattcacacgagaaa 1590
| ||||| |||||||||| ||||||||||
Sbjct: 120058056 a---acatcaaaccctcatttacacgagaaa 120058083
Score = 1723 bits (869), Expect = 0.0
Identities = 1412/1591 (88%), Gaps = 9/1591 (0%)
Strand = Plus / Minus
Query: 2 gtgccattagtatatataaacatcattatagcattcgcgatcgcccttgcagggttactt 61
||||||||||||||||||||||| || |||||||||| |||||||| ||| ||||
Sbjct: 96268603 gtgccattagtatatataaacattatcgtagcattcgcagtcgcccttataggactactc 96268544
Query: 62 atatatcgatctcacttaatatcttcactactatgcctagaaggaatgatactatcacta 121
||||| |||||||||||||| |||||||||||||||||||| ||||| ||| |||||||
Sbjct: 96268543 atataccgatctcacttaatgtcttcactactatgcctagagggaataatattatcactt 96268484
Query: 122 ttcatcatatcgactctaattatcctaaacacacacttcaccctagctaacataataccc 181
||||||||||| ||| ||||| || ||||||||||||||||||| |||| ||||||||||
Sbjct: 96268483 ttcatcatatctactttaattgtcttaaacacacacttcacccttgctagcataataccc 96268424
Query: 182 attattttactagtgtttgcagcctgcgaagctgcactaggcctgtcactactagtaata 241
|||||| || |||| |||||||| ||||| || ||||| || || || ||||||| |||
Sbjct: 96268423 attattctattagtatttgcagcttgcgaggccgcactcggtctatcgttactagtgata 96268364
Query: 242 gtatccaacacatacggtaccgattacgtccaaaacttaaaccttttacaatgctaaaaa 301
|||||||| ||||| |||||||| |||||||||||| |||| || |||||||||||| ||
Sbjct: 96268363 gtatccaatacatatggtaccgactacgtccaaaacctaaatctcttacaatgctaataa 96268304
Query: 302 ttattatcccaacaacaatactactacccataacatgaatatctaaacacaacataatct 361
||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 96268303 ttattattccaacaa-aatactactacccataacatgaatatctaaacacagtataatct 96268245
Query: 362 gaatcaatgcaacagtacatagtctcctcattagcctgatcagtctatccctactaaacc 421
|||| ||||||||||||||||| ||||| |||||||| || ||||| |||||| ||||||
Sbjct: 96268244 gaattaatgcaacagtacatagcctccttattagcctaattagtctctccctattaaacc 96268185
Query: 422 aactaggcgaaaacagccttaatttttccttaacattcttctccgactcactatcagcac 481
| ||| ||| ||||| ||||| || | |||||| |||||||||||||||||| |||
Sbjct: 96268184 agctaaacgacaacagtcttaacttct----aacatttttctccgactcactatcaacac 96268129
Query: 482 ccctactagttctaaccacatgactcctcccccttatactaatagctagccaatctcacc 541
| ||||||||||||||||||||||| || ||||||||||||| |||||| ||||| |||
Sbjct: 96268128 ctctactagttctaaccacatgacttcttccccttatactaacagctagtcaatcccact 96268069
Query: 542 tatcaaaagaaaccacaacccgnnnnnnnctatatattaccatactaatcctactacaac 601
||||||||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct: 96268068 tatcaaaagaaacaacaacccgaaaaaaactatacatcaccatactaatcctactacaac 96268009
Query: 602 tattcctaattataaccttcaccgccaccgaactaatcctattctatatcctattcgaag 661
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct: 96268008 tattcctaattataaccttcaccgccaccgaactaatcttattttatattctattcgaag 96267949
Query: 662 caacactagtacccacactaattatcatcacacgctgaggaaaccaaacagaacgactca 721
||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 96267948 caacactagtacccacattaattatcattacacgctgaggaaatcaaacagaacgactca 96267889
Query: 722 atgcaggactttatttcctattctacaccctagcaggatccctaccactgctagtagcac 781
|||||||||| || ||| ||||||| |||||||| |||||||||||||| || |||||||
Sbjct: 96267888 atgcaggactatacttcttattctataccctagcgggatccctaccactactggtagcac 96267829
Query: 782 tagtttatatccaaaataccacaggctcactaaacttcttaattatccattactgatccc 841
|||| || ||||| ||||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct: 96267828 tagtctacatccagaatactacaggctcactaaatttcttaattattcactactgatccc 96267769
Query: 842 acccattatccaactcttgatcaaacatttttatatgattagcatgcatcatagccttca 901
|||||||||| || |||||||||| |||||||||||| ||||||||||||| |||||||
Sbjct: 96267768 acccattatctaatacttgatcaaatatttttatatgactagcatgcatcatggccttca 96267709
Query: 902 tagtaaaaatacctctgtacggactccatctttgactgccaaaagcccatgtagaagccc 961
||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||
Sbjct: 96267708 tagtaaaaataccactatatggactccacctttgactgccaaaagcccatgtagaagccc 96267649
Query: 962 ccattgcaggttcaatagtacttgcagccgtactgctaaaactcggaggctatggcataa 1021
||||||||||||||||||||||||||||| |||||||||| || ||||||||||| ||||
Sbjct: 96267648 ccattgcaggttcaatagtacttgcagccatactgctaaagcttggaggctatggtataa 96267589
Query: 1022 tgcgaatcactactattctaaacccactaacaaactacatagcctatccattcctcatgc 1081
| ||||| || |||||||||||||||||||||||||||||||| || ||||| || || |
Sbjct: 96267588 tacgaattaccactattctaaacccactaacaaactacatagcttacccatttcttatac 96267529
Query: 1082 tttccatatgaggcataatcataaccagctctatctgcttacgtcaaaccgacctaaaat 1141
|||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||
Sbjct: 96267528 tttccatatgaggcatgattataaccagctctatttgcttacgtcaaactgacctaaaat 96267469
Query: 1142 ccttaatcgcctattcatcagtaagtcatatagcacttgtaatcgtagcaatcataattc 1201
|| ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 96267468 ccctaatcgcttactcatcagtaagccatatagcacttgtaattgtagcaatcataattc 96267409
Query: 1202 aaaccccctgaagcttcataggggccacagctctcataattgcccacggactaacatcct 1261
|||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||
Sbjct: 96267408 aaaccccctgaagcttcataggagctacagctcttataatcgcccacggactaacatcct 96267349
Query: 1262 ccatactattctgcctagccaacactaactatgaacgagtacacagccgaaccataatcc 1321
|||||||||||||||| || || ||||| || ||||||||||||| ||||| |||||||
Sbjct: 96267348 ccatactattctgcctggctaatactaattacaaacgagtacacagtcgaactataatcc 96267289
Query: 1322 tggcccgaggactgcaaacactcctaccactcatagncacatgatgactaatagcaagcc 1381
| |||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 96267288 tagcccgagggttacaaacattcctaccactcatagcaacatgatgactaatagcaagcc 96267229
Query: 1382 tcacaaacctagccctacccccatccatcaatctaatcggaagaatatttatcatcacag 1441
||||||| |||||||||||||||||||||||| |||| ||| | | || ||||||||||
Sbjct: 96267228 tcacaaatctagccctacccccatccatcaatttaattggagaattgttcatcatcacag 96267169
Query: 1442 catcattttcatgatccaacatcacaattattctcataggaataaacataataatta-ag 1500
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct: 96267168 catcattttcctgatccaacatcacaattattcttataggaataaatataataattacag 96267109
Query: 1501 ccttctactctctctacttactaattactaac-ccacgaggaaaatacccccancacatt 1559
|| |||||||||||||| ||||||| |||| | |||||||||||| |||| ||||||
Sbjct: 96267108 ccctctactctctctacatactaat--ataacacaacgaggaaaatatacccaccacatt 96267051
Query: 1560 aacnacatccaaccctcattcacacgagaaa 1590
||| ||| | |||||||||| ||| ||||||
Sbjct: 96267050 aacaacagcaaaccctcatttacatgagaaa 96267020
>Sscrofa_Chr17
|| Length = 69701581
Score = 470 bits (237), Expect = e-129
Identities = 740/905 (81%), Gaps = 6/905 (0%)
Strand = Plus / Plus
Query: 583 atactaatcctactacaactattcctaattataaccttcaccgccaccgaactaatccta 642
|||||| | ||||| | ||||||| || | |||||||| | |||||| |||||||| ||
Sbjct: 15219372 atactagtgctactgccactattcttagtaataacctttcctgccaccaaactaatctta 15219431
Query: 643 ttctatatcctattcgaagcaacactagtacccacactaattatcatcacacgctgagga 702
|| || | |||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 15219432 tt-tacaccctatttgaagcaacattagtacccacactaattatcatcacacgctgagga 15219490
Query: 703 aaccaaacagaacgactcaatgcaggactttatttcctattctacaccctagcaggatcc 762
| |||||||||| |||| || |||||| | || || || ||||||| ||||||||||||
Sbjct: 15219491 agccaaacagaatgacttaacgcaggattatactttctgttctacatgctagcaggatcc 15219550
Query: 763 ctaccactgctagtagcactagtttatatccaaaataccacaggctcactaaacttctta 822
|| ||||| |||||| | |||||||||||||||| |||| ||||||||||||||||||
Sbjct: 15219551 ctcccacttctagtaacgttagtttatatccaaaacaccatgggctcactaaacttctta 15219610
Query: 823 attatccatt-actgatcccacccattatccaactcttgatcaaacatttttatatgatt 881
|| || |||| ||||| ||| || | | ||| | |||||||| || || ||||||||
Sbjct: 15219611 atcatacattaactgaattcacgcactgcctaacacctgatcaaatatcttcatatgatt 15219670
Query: 882 agcatgcatcatagccttcatagtaaaaatacctctgtacggactccatctttgactgcc 941
|||||| || ||||||||||||||||||||||| || |||||||| ||||||||| | ||
Sbjct: 15219671 agcatgtattatagccttcatagtaaaaataccactatacggacttcatctttgattacc 15219730
Query: 942 aaaagcccatgtagaagcccccattgcaggttcaatagtacttgcagccgtactgctaaa 1001
||||||||||| ||||||| || ||||| |||||||||||||||||||| || ||||
Sbjct: 15219731 caaagcccatgtggaagcccgtatcgcaggctcaatagtacttgcagccgtcctattaaa 15219790
Query: 1002 actcggaggctatggcataatgcgaatcactactattctaaacccactaacaaactacat 1061
||| |||||||| |||||| ||| | ||| | ||||| ||||||||||||| || |||
Sbjct: 15219791 acttggaggctacggcatactgcaggtgactgccattctcaacccactaacaagcttcat 15219850
Query: 1062 agcctatccattcctcatgctttccatatgaggcataatcataaccagctctatctgctt 1121
|||||| ||||| | | || ||| | || |||||||||||||||||||| |||| |||
Sbjct: 15219851 agcctacccatttttaacactctccctgtggggcataatcataaccagctcaatcttctt 15219910
Query: 1122 acgtcaaaccgacctaaaatccttaatcgcctattcatcagtaagtcatatagcacttgt 1181
| | |||| | |||| |||||| |||| | | ||||||||||||||||||||||||||
Sbjct: 15219911 aggccaaatcaacctgaaatccccaatcactcactcatcagtaagtcatatagcacttgt 15219970
Query: 1182 aatcgtagcaatcataattcaaaccccctgaagcttcataggggccacagctctcataat 1241
||| ||||||| | |||| |||||||| |||||||| |||| ||| ||||| || |||||
Sbjct: 15219971 aattgtagcaagcctaatccaaaccccatgaagctttatagaggcaacagccctaataat 15220030
Query: 1242 tgcccacggactaacatcctccatactattctgcctagccaacactaactatgaacgagt 1301
||||||||| |||||| || |||| ||||||| | || ||||| ||||| || | ||
Sbjct: 15220031 tgcccacggcttaacattgtctataccattctgcttcgcaaacaccaactacgagcacgt 15220090
Query: 1302 acacagccgaaccataatcctggcccgaggactgcaaacactcctaccactcatagncac 1361
||| || |||||||| ||||| ||||| || || || ||| | |||||||| | | ||
Sbjct: 15220091 acatagtcgaaccatgatcctagcccggggcctacagacatttctaccacttacggcaac 15220150
Query: 1362 atgatgactaat----agcaagcctcacaaacctagccctacccccatccatcaatctaa 1417
||||||| |||| |||||||||| |||||||||| ||||||||| |||| || ||||
Sbjct: 15220151 atgatgattaatagcaagcaagcctcgcaaacctagctctacccccaaccattaacctaa 15220210
Query: 1418 tcggaagaatatttatcatcacagcatcattttcatgatccaacatcacaattattctca 1477
| ||| | | || ||||||||||||||||| || ||||| || ||||| || || ||||
Sbjct: 15220211 ttggagaactcttcatcatcacagcatcattctcctgatctaatatcaccatcatcctca 15220270
Query: 1478 tagga 1482
|||||
Sbjct: 15220271 tagga 15220275
>Sscrofa_Chr16
|| Length = 86898991
Score = 198 bits (100), Expect = 7e-48
Identities = 205/240 (85%)
Strand = Plus / Minus
Query: 74 cacttaatatcttcactactatgcctagaaggaatgatactatcactattcatcatatcg 133
||||||||||| ||||| | |||||||||||||||||||||||||| || || |||||
Sbjct: 7699384 cacttaatatcgtcactgttgtgcctagaaggaatgatactatcactttttattatatct 7699325
Query: 134 actctaattatcctaaacacacacttcaccctagctaacataatacccattattttacta 193
|||||||| ||| |||| ||||| ||||| | || | |||||||||||| ||| | |||
Sbjct: 7699324 actctaatcatcttaaatacacatttcactccggccagcataatacccatcattctgcta 7699265
Query: 194 gtgtttgcagcctgcgaagctgcactaggcctgtcactactagtaatagtatccaacaca 253
|| || ||||||||||| || ||||| || || ||| ||||||||| |||||| || |||
Sbjct: 7699264 gtattcgcagcctgcgaggccgcacttggtctatcattactagtaacagtatcaaataca 7699205
Query: 254 tacggtaccgattacgtccaaaacttaaaccttttacaatgctaaaaattattatcccaa 313
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 7699204 tatggtaccgactacgtccaaaacttaaacctcttacaatgctaaaaattattaccccaa 7699145
>Sscrofa_Chr14
|| Length = 153851969
Score = 188 bits (95), Expect = 7e-45
Identities = 198/231 (85%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 1090 tgaggcataatcataaccagctctatctgcttacgtcaaaccgacctaaaatccttaatc 1149
||||||||||||||||||||||| | |||||||| ||||||||| | |||||| || ||
Sbjct: 43110063 tgaggcataatcataaccagctcaacctgcttacaccaaaccgacttgaaatccctagtc 43110122
Query: 1150 gcctattcatcagt-aagtcatatagcacttgtaatcgtagcaatcataattcaaacccc 1208
|| | |||||||| ||||||||||||||||||||| | ||||||| |||| ||||||||
Sbjct: 43110123 gctttctcatcagttaagtcatatagcacttgtaattgcagcaatcctaatccaaacccc 43110182
Query: 1209 ctgaagcttcataggggccacagctctcataattgcccacggactaacatcctccatact 1268
|||||||| ||||| || |||||||| |||| || |||||| |||||||||| || |
Sbjct: 43110183 atgaagctttataggagcaacagctctaataactggccacggcttaacatcctctatgat 43110242
Query: 1269 attctgcctagccaacactaactatgaacgagtacacagccgaaccataat 1319
||||||||| || ||||||||||||||||| |||| ||||||||||||||
Sbjct: 43110243 attctgcctcgcaaacactaactatgaacgcctacatagccgaaccataat 43110293
Score = 83.8 bits (42), Expect = 3e-13
Identities = 135/164 (82%), Gaps = 4/164 (2%)
Strand = Plus / Plus
Query: 571 ctatatattaccatactaatcctactacaactattcctaattataaccttcaccgccacc 630
||||||||||| ||||||||| | ||||| | |||||||||||||| ||||| |||||
Sbjct: 36163735 ctatatattacaatactaatcatgctacagatgttcctaattataacattcacggccaca 36163794
Query: 631 gaactaatcctattctatatcctattcgaagcaacactagtacccacactaattatcatc 690
|||| || |||||||| || |||| |||||||||||||| |||| | ||||| ||
Sbjct: 36163795 taactgattctattctacctcttattagaagcaacactagt---cacaat-attattatt 36163850
Query: 691 acacgctgaggaaaccaaacagaacgactcaatgcaggacttta 734
|| | |||||||||| ||||||||| | | ||||||||||||||
Sbjct: 36163851 acccactgaggaaacgaaacagaacaatttaatgcaggacttta 36163894
Score = 83.8 bits (42), Expect = 3e-13
Identities = 135/164 (82%), Gaps = 4/164 (2%)
Strand = Plus / Plus
Query: 571 ctatatattaccatactaatcctactacaactattcctaattataaccttcaccgccacc 630
||||||||||| ||||||||| | ||||| | |||||||||||||| ||||| |||||
Sbjct: 36164505 ctatatattacaatactaatcatgctacagatgttcctaattataacattcacggccaca 36164564
Query: 631 gaactaatcctattctatatcctattcgaagcaacactagtacccacactaattatcatc 690
|||| || |||||||| || |||| |||||||||||||| |||| | ||||| ||
Sbjct: 36164565 taactgattctattctacctcttattagaagcaacactagt---cacaat-attattatt 36164620
Query: 691 acacgctgaggaaaccaaacagaacgactcaatgcaggacttta 734
|| | |||||||||| ||||||||| | | ||||||||||||||
Sbjct: 36164621 acccactgaggaaacgaaacagaacaatttaatgcaggacttta 36164664
>Sscrofa_Chr05
|| Length = 111506441
Score = 174 bits (88), Expect = 1e-40
Identities = 159/183 (86%)
Strand = Plus / Plus
Query: 1213 agcttcataggggccacagctctcataattgcccacggactaacatcctccatactattc 1272
|||||||||||||| ||||| || ||| | ||||||||| |||||||||||||| |||||
Sbjct: 53826134 agcttcataggggcaacagccctaatagtcgcccacggattaacatcctccatattattc 53826193
Query: 1273 tgcctagccaacactaactatgaacgagtacacagccgaaccataatcctggcccgagga 1332
|||||||| ||||| ||||| || |||||||||||| |||||||||||| ||| ||||
Sbjct: 53826194 tgcctagcaaacaccaactaggagtgagtacacagccaaaccataatcctagcctgaggc 53826253
Query: 1333 ctgcaaacactcctaccactcatagncacatgatgactaatagcaagcctcacaaaccta 1392
||||||||| | ||||||||||||| ||||| ||| ||||||||||||| |||||| ||
Sbjct: 53826254 ctgcaaacatttctaccactcatagcaacatggtgattaatagcaagccttacaaactta 53826313
Query: 1393 gcc 1395
|||
Sbjct: 53826314 gcc 53826316
>Sscrofa_Chr18
|| Length = 61220071
Score = 143 bits (72), Expect = 4e-31
Identities = 117/132 (88%)
Strand = Plus / Minus
Query: 191 ctagtgtttgcagcctgcgaagctgcactaggcctgtcactactagtaatagtatccaac 250
||||| |||||||| || ||||||||||| ||||| |||| | || |||||||||| |||
Sbjct: 60928060 ctagtatttgcagcttgtgaagctgcacttggcctatcacgattactaatagtatcaaac 60928001
Query: 251 acatacggtaccgattacgtccaaaacttaaaccttttacaatgctaaaaattattatcc 310
||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 60928000 acatatagtaccgattatgtccaaatcttaaacctcctacaatgctaaaaattattatcc 60927941
Query: 311 caacaacaatac 322
||||||||||||
Sbjct: 60927940 caacaacaatac 60927929
>Sscrofa_Chr06
|| Length = 157765593
Score = 113 bits (57), Expect = 3e-22
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 231 tactagtaatagtatccaacacatacggtaccgattacgtccaaaacttaaaccttttac 290
|||||||||||||||| || ||||| ||||||||||| ||||||||| ||||||| ||||
Sbjct: 78758426 tactagtaatagtatcaaatacatatggtaccgattatgtccaaaacctaaacctcttac 78758367
Query: 291 aatgctaaaaattattatcccaaca 315
||||||||||||||| |||||||||
Sbjct: 78758366 aatgctaaaaattatcatcccaaca 78758342
>Sscrofa_ChrX
|| Length = 144288218
Score = 89.7 bits (45), Expect = 5e-15
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 1345 ctaccactcatagncacatgatgactaatagcaagcctcacaaacctagccctaccccca 1404
||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct: 23484444 ctaccactcatagcaacatgatgactaatagcaagccttacaaactgagctctaccccca 23484503
Query: 1405 tccatcaatctaatcggaagaatatttatcatcacagcatcatt 1448
||| || ||||| ||| | |||| |||||||||||||||||
Sbjct: 23484504 atcattaacctaattggagaactattcatcatcacagcatcatt 23484547
>Sscrofa_Chr13
|| Length = 218635234
Score = 63.9 bits (32), Expect = 3e-07
Identities = 103/126 (81%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 1466 caattattctcataggaataaacataataatta-agccttctactctctctacttactaa 1524
||||||||||||||||| | || ||| |||||| |||| ||||||| ||||| ||||||
Sbjct: 112014470 caattattctcataggactgaatatactaattacagccctctactccctctatatactaa 112014411
Query: 1525 ttactaacccacgaggaaaatacccccancacattaacnacatccaaccctcattcacac 1584
|||| | | |||||||||||| | || |||| ||| | ||| | |||||||||||||
Sbjct: 112014410 ttacaacacaacgaggaaaatatacacactacatcaacaatatcaagccctcattcacac 112014351
Query: 1585 gagaaa 1590
||||||
Sbjct: 112014350 gagaaa 112014345
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 46,763,877
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 16
Length of query: 1684
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1662
Effective length of database: 2,808,408,574
Effective search space: 4667575049988
Effective search space used: 4667575049988
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)