Animal-Genome cDNA 20110601C-000087


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000087
         (1039 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033596.1| glioma tumor suppressor candidate region gen...   489   e-138

>ref|NP_001033596.1| glioma tumor suppressor candidate region gene 2 protein [Bos taurus].
          Length = 484

 Score =  489 bits (1259), Expect = e-138
 Identities = 250/322 (77%), Positives = 268/322 (83%)
 Frame = +2

Query: 53   RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
            +CSKSE D+GFLGLRPTSVDPAL                LAQEPLGLEVDQFLEDVRLQE
Sbjct: 12   QCSKSETDTGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEVDQFLEDVRLQE 71

Query: 233  RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
            RTSGGLISEAPDEKLFFVDTG K+KELN+KRT+ QKRSLLLKKPLR DL+LENTSKVP P
Sbjct: 72   RTSGGLISEAPDEKLFFVDTGFKDKELNKKRTKGQKRSLLLKKPLRSDLILENTSKVPVP 131

Query: 413  KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
            KDVLAHQVPNA+KL+RKEQLWE+LAKQG+LP EVRRAQARLLNPPAA AKPGPQD   RP
Sbjct: 132  KDVLAHQVPNARKLKRKEQLWERLAKQGKLPGEVRRAQARLLNPPAATAKPGPQDTVQRP 191

Query: 593  FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
            FYDLWAK NPLD PLEGQD FFLEQTKKKGVKRPQHLHTKPS+ PAVEVTPAGASYNP+F
Sbjct: 192  FYDLWAKGNPLDRPLEGQDEFFLEQTKKKGVKRPQHLHTKPSRVPAVEVTPAGASYNPAF 251

Query: 773  EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQXXXXXXXXXXXX 952
            EDHQ LL AAHEVELQR+K  EKLERQLALP +EQAATQESAF+EMCQ            
Sbjct: 252  EDHQNLLWAAHEVELQREKAAEKLERQLALPASEQAATQESAFREMCQGLLEESDGEGEP 311

Query: 953  AQGQDRGLEAGGNQAKGPKASP 1018
             +GQD G EAG   A+G +ASP
Sbjct: 312  GEGQDEGPEAGDPAARG-EASP 332


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,350,058
Number of extensions: 911963
Number of successful extensions: 5709
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5648
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000087
         (1039 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533631.2| PREDICTED: similar to Glioma tumor suppressor c...   507   e-144

>ref|XP_533631.2| PREDICTED: similar to Glioma tumor suppressor candidate region gene 2
            protein (p60) [Canis familiaris].
          Length = 520

 Score =  507 bits (1306), Expect = e-144
 Identities = 260/346 (75%), Positives = 278/346 (80%), Gaps = 1/346 (0%)
 Frame = +2

Query: 5    ASFNKMXXXXXXXXXXRCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEP 184
            ASF KM          RCSKSE D+GFLG RPTSVDPAL                LAQEP
Sbjct: 31   ASFAKMAPEGSGGGGGRCSKSETDTGFLGFRPTSVDPALRRRRRGPRNKKRGWRRLAQEP 90

Query: 185  LGLEVDQFLEDVRLQERTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKP 364
            LGLEVDQFLEDVRLQERTSGGL+SEAPDEKLFFVDTGSK KEL++KRTRSQKRSLLLKKP
Sbjct: 91   LGLEVDQFLEDVRLQERTSGGLVSEAPDEKLFFVDTGSKRKELDKKRTRSQKRSLLLKKP 150

Query: 365  LRIDLVLENTSKVPAPKDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNP 544
            LR+DL+LENTSKVPAPKDVLAHQ+PNA+KL+RKEQLWEKLAKQGELPR+VRRAQARLLNP
Sbjct: 151  LRVDLILENTSKVPAPKDVLAHQIPNARKLKRKEQLWEKLAKQGELPRDVRRAQARLLNP 210

Query: 545  PAARAKPGPQDAAGRPFYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQA 724
            P  +AKPGPQD   RPFYDLWAKDNPL+ PL GQD FFLEQTKKKGVKRP HLH KPSQ 
Sbjct: 211  PKTKAKPGPQDTVERPFYDLWAKDNPLEQPLAGQDTFFLEQTKKKGVKRPPHLHIKPSQV 270

Query: 725  PAVEVTPAGASYNPSFEDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQ 904
            PAVEVTPAGASYNPSFEDHQTLL AAHEVELQRQKE EKLERQLALP +EQ ATQESAFQ
Sbjct: 271  PAVEVTPAGASYNPSFEDHQTLLLAAHEVELQRQKEAEKLERQLALPASEQPATQESAFQ 330

Query: 905  EMCQXXXXXXXXXXXXAQGQDRGLEAGGNQAKGPKASPA-VRLASL 1039
            EMCQ             +G D   EAGG Q +G + SP  VRLA++
Sbjct: 331  EMCQGLLEESDGEEEPGEGPDTVPEAGGKQTEGAETSPTPVRLAAM 376


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,934,673
Number of extensions: 944236
Number of successful extensions: 6173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6129
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000087
         (1039 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056525.2| glioma tumor suppressor candidate region gene 2...   476   e-134

>ref|NP_056525.2| glioma tumor suppressor candidate region gene 2 protein [Homo
           sapiens].
          Length = 478

 Score =  476 bits (1225), Expect = e-134
 Identities = 246/311 (79%), Positives = 257/311 (82%)
 Frame = +2

Query: 53  RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
           R SKS+ADSGFLGLRPTSVDPAL                LAQEPLGLEVDQFLEDVRLQE
Sbjct: 12  RSSKSDADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEVDQFLEDVRLQE 71

Query: 233 RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
           RTSGGL+SEAP+EKLFFVDTGSK K L +KRT+ QK+SLLLKKPLR+DL+LENTSKVPAP
Sbjct: 72  RTSGGLLSEAPNEKLFFVDTGSKEKGLTKKRTKVQKKSLLLKKPLRVDLILENTSKVPAP 131

Query: 413 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
           KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNP A RAKPGPQD   RP
Sbjct: 132 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAKPGPQDTVERP 191

Query: 593 FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
           FYDLWA DNPLD PL GQD FFLEQTKKKGVKRP  LHTKPSQAPAVEV PAGASYNPSF
Sbjct: 192 FYDLWASDNPLDRPLVGQDEFFLEQTKKKGVKRPARLHTKPSQAPAVEVAPAGASYNPSF 251

Query: 773 EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQXXXXXXXXXXXX 952
           EDHQTLL AAHEVELQRQKE EKLERQLALP  EQAATQES FQE+C+            
Sbjct: 252 EDHQTLLSAAHEVELQRQKEAEKLERQLALPATEQAATQESTFQELCEGLLEESDGEGEP 311

Query: 953 AQGQDRGLEAG 985
            QG+  G EAG
Sbjct: 312 GQGE--GPEAG 320


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,844,314
Number of extensions: 899352
Number of successful extensions: 5328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5289
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000087
         (1039 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_598592.2| glioma tumor suppressor candidate region gene 2...   439   e-123

>ref|NP_598592.2| glioma tumor suppressor candidate region gene 2 [Mus musculus].
          Length = 484

 Score =  439 bits (1130), Expect = e-123
 Identities = 219/288 (76%), Positives = 243/288 (84%)
 Frame = +2

Query: 53  RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
           R S+S+ADSGFLGLRPTSVDPAL                LA+EPLGLEVDQFLEDVRLQE
Sbjct: 12  RGSRSQADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAEEPLGLEVDQFLEDVRLQE 71

Query: 233 RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
           RT+GGL++EAP+EKLFFVDTG K KE  +KRT  QK+S  L+KPLR+DL LEN SK+PAP
Sbjct: 72  RTTGGLLAEAPNEKLFFVDTGFKRKEPRKKRTLVQKKSQRLQKPLRVDLALENHSKIPAP 131

Query: 413 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
           KD+LAHQVPNAKKLRRKE+LWEKLAKQGELPR+VR+AQARLL+PP  +AKPGPQD   RP
Sbjct: 132 KDILAHQVPNAKKLRRKEELWEKLAKQGELPRDVRKAQARLLSPPTPKAKPGPQDIIERP 191

Query: 593 FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
           FYDLW  DNPLD PL GQDAFFLEQTKKKGV+RPQ LH KPSQ PAVEV PAGASYNP+F
Sbjct: 192 FYDLWNPDNPLDTPLIGQDAFFLEQTKKKGVRRPQRLHIKPSQVPAVEVIPAGASYNPTF 251

Query: 773 EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQ 916
           EDHQ LLR AHEVELQR+KE EKLERQLALP +EQAATQES F+EMC+
Sbjct: 252 EDHQALLREAHEVELQREKEAEKLERQLALPTSEQAATQESVFREMCE 299


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,127,438
Number of extensions: 718896
Number of successful extensions: 4174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000087
         (1039 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356008.1| PREDICTED: glioma tumor suppressor candidate...   577   e-165

>ref|XP_003356008.1| PREDICTED: glioma tumor suppressor candidate region gene 2 protein
            [Sus scrofa].
          Length = 483

 Score =  577 bits (1487), Expect = e-165
 Identities = 296/329 (89%), Positives = 300/329 (91%)
 Frame = +2

Query: 53   RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
            RCSKSEADSGFLGLRPTSVDPAL                LAQEPLGLEVDQFLEDVRLQE
Sbjct: 12   RCSKSEADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEVDQFLEDVRLQE 71

Query: 233  RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
            RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP
Sbjct: 72   RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 131

Query: 413  KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
            KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP
Sbjct: 132  KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 191

Query: 593  FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
            FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF
Sbjct: 192  FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 251

Query: 773  EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQXXXXXXXXXXXX 952
            EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQ            
Sbjct: 252  EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQGLLEESDGEGEL 311

Query: 953  AQGQDRGLEAGGNQAKGPKASPAVRLASL 1039
            A+GQDRGLEAGG+QA+G +ASPAVRLASL
Sbjct: 312  AEGQDRGLEAGGDQAEGAEASPAVRLASL 340


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,648,806
Number of extensions: 596765
Number of successful extensions: 3809
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3763
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000087
         (1039 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         478   e-132

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  478 bits (241), Expect = e-132
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                            
Query: 3        gtgcttcctttaacaagatggcggcgggaagtagtgccgctggcggtgcgcgctgctcaa 62
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973593 gtgcttcctttaacaagatggcggcgggaagtagtgccgctggcggtgcgcgctgctcaa 48973652

                                                                            
Query: 63       aaagcgaggccgactctggcttcctggggctgcggcccacttcggtggacccagccttga 122
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973653 aaagcgaggccgactctggcttcctggggctgcggcccacttcggtggacccagccttga 48973712

                                                                            
Query: 123      ggcggcggcggcgaggcccaagaaataagaagcgggggtggcggcggctcgctcaggagc 182
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973713 ggcggcggcggcgaggcccaagaaataagaagcgggggtggcggcggctcgctcaggagc 48973772

                                                                            
Query: 183      cgctgggactggaggtcgatcagttcctggaggacgtgcggctgcaggagcgcacgagcg 242
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973773 cgctgggactggaggtcgatcagttcctggaggacgtgcggctgcaggagcgcacgagcg 48973832

                 
Query: 243      g 243
                |
Sbjct: 48973833 g 48973833



 Score =  396 bits (200), Expect = e-108
 Identities = 200/200 (100%)
 Strand = Plus / Plus

                                                                            
Query: 418      cgtccttgcccaccaggtccccaatgccaagaagctccggcggaaggagcagctatggga 477
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977248 cgtccttgcccaccaggtccccaatgccaagaagctccggcggaaggagcagctatggga 48977307

                                                                            
Query: 478      gaagctggccaagcagggcgagctgccccgggaggtgcgcagggcgcaggcccggctcct 537
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977308 gaagctggccaagcagggcgagctgccccgggaggtgcgcagggcgcaggcccggctcct 48977367

                                                                            
Query: 538      caaccctcctgcggccagagccaagcctgggccccaggatgccgccgggcgtcccttcta 597
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977368 caaccctcctgcggccagagccaagcctgggccccaggatgccgccgggcgtcccttcta 48977427

                                    
Query: 598      tgacctctgggccaaagaca 617
                ||||||||||||||||||||
Sbjct: 48977428 tgacctctgggccaaagaca 48977447



 Score =  240 bits (121), Expect = 1e-60
 Identities = 145/153 (94%)
 Strand = Plus / Plus

                                                                            
Query: 887      caggagtccgccttccaggagatgtgccaggggctgctggaggaatcggacggggagggg 946
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 48979918 caggagtccgccttccaggagatgtgccaggggctgctggaggagtcggacggggagggg 48979977

                                                                            
Query: 947      gagctggcccagggccaggaccgggggctggaggctggaggaaaccaggccaaaggacca 1006
                ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 48979978 gagctggccgagggccaggaccgggggctggaggctggaggagaccaggccgaaggagca 48980037

                                                 
Query: 1007     aaggcctcgccagcggtccgcctggcttccttg 1039
                 ||||||||||||| ||||||||||| ||||||
Sbjct: 48980038 gaggcctcgccagccgtccgcctggcctccttg 48980070



 Score =  220 bits (111), Expect = 1e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 307      agagctgaacaggaagaggaccagaagccagaagaggtccctgcttctcaagaaacccct 366
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48976614 agagctgaacaggaagaggaccagaagccagaagaggtccctgcttctcaagaaacccct 48976673

                                                                   
Query: 367      tcggatcgacctcgtcctagagaacacatccaaggtccctgcccccaaaga 417
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48976674 tcggatcgacctcgtcctagagaacacatccaaggtccctgcccccaaaga 48976724



 Score =  216 bits (109), Expect = 2e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 782      cagactctgctccgtgcggcccatgaggtagagctgcagcggcagaaagaggtggagaag 841
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48979729 cagactctgctccgtgcggcccatgaggtagagctgcagcggcagaaagaggtggagaag 48979788

                                                                 
Query: 842      ctggagcggcagctggccctgccccccgccgagcaggccgccacccagg 890
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48979789 ctggagcggcagctggccctgccccccgccgagcaggccgccacccagg 48979837



 Score =  194 bits (98), Expect = 7e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                            
Query: 687      agcggcctcagcatctccacaccaagccctcccaggcgcctgctgtggaggtgacccccg 746
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48978357 agcggcctcagcatctccacaccaagccctcccaggcgcctgctgtggaggtgacccccg 48978416

                                                      
Query: 747      cgggagcctcctacaacccgtcctttgaggaccaccag 784
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 48978417 cgggagcctcctacaacccgtcctttgaggaccaccag 48978454



 Score =  141 bits (71), Expect = 9e-31
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                            
Query: 618      acccgctggatgggcccctggaaggccaggacgcgttcttcctggagcagaccaagaaga 677
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977713 acccgctggatgggcccctggaaggccaggacgcgttcttcctggagcagaccaagaaga 48977772

                           
Query: 678      agggggtgaag 688
                |||||||||||
Sbjct: 48977773 agggggtgaag 48977783



 Score =  131 bits (66), Expect = 8e-28
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                            
Query: 243      gtggcttgatatcagaggccccggatgaaaaactcttcttcgtggacactggctccaaga 302
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48974260 gtggcttgatatcagaggccccggatgaaaaactcttcttcgtggacactggctccaaga 48974319

                      
Query: 303      ataaag 308
                ||||||
Sbjct: 48974320 ataaag 48974325


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,968,298
Number of extensions: 264
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 8
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)