Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000087
(1039 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033596.1| glioma tumor suppressor candidate region gen... 489 e-138
>ref|NP_001033596.1| glioma tumor suppressor candidate region gene 2 protein [Bos taurus].
Length = 484
Score = 489 bits (1259), Expect = e-138
Identities = 250/322 (77%), Positives = 268/322 (83%)
Frame = +2
Query: 53 RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
+CSKSE D+GFLGLRPTSVDPAL LAQEPLGLEVDQFLEDVRLQE
Sbjct: 12 QCSKSETDTGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEVDQFLEDVRLQE 71
Query: 233 RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
RTSGGLISEAPDEKLFFVDTG K+KELN+KRT+ QKRSLLLKKPLR DL+LENTSKVP P
Sbjct: 72 RTSGGLISEAPDEKLFFVDTGFKDKELNKKRTKGQKRSLLLKKPLRSDLILENTSKVPVP 131
Query: 413 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
KDVLAHQVPNA+KL+RKEQLWE+LAKQG+LP EVRRAQARLLNPPAA AKPGPQD RP
Sbjct: 132 KDVLAHQVPNARKLKRKEQLWERLAKQGKLPGEVRRAQARLLNPPAATAKPGPQDTVQRP 191
Query: 593 FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
FYDLWAK NPLD PLEGQD FFLEQTKKKGVKRPQHLHTKPS+ PAVEVTPAGASYNP+F
Sbjct: 192 FYDLWAKGNPLDRPLEGQDEFFLEQTKKKGVKRPQHLHTKPSRVPAVEVTPAGASYNPAF 251
Query: 773 EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQXXXXXXXXXXXX 952
EDHQ LL AAHEVELQR+K EKLERQLALP +EQAATQESAF+EMCQ
Sbjct: 252 EDHQNLLWAAHEVELQREKAAEKLERQLALPASEQAATQESAFREMCQGLLEESDGEGEP 311
Query: 953 AQGQDRGLEAGGNQAKGPKASP 1018
+GQD G EAG A+G +ASP
Sbjct: 312 GEGQDEGPEAGDPAARG-EASP 332
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,350,058
Number of extensions: 911963
Number of successful extensions: 5709
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5648
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000087
(1039 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533631.2| PREDICTED: similar to Glioma tumor suppressor c... 507 e-144
>ref|XP_533631.2| PREDICTED: similar to Glioma tumor suppressor candidate region gene 2
protein (p60) [Canis familiaris].
Length = 520
Score = 507 bits (1306), Expect = e-144
Identities = 260/346 (75%), Positives = 278/346 (80%), Gaps = 1/346 (0%)
Frame = +2
Query: 5 ASFNKMXXXXXXXXXXRCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEP 184
ASF KM RCSKSE D+GFLG RPTSVDPAL LAQEP
Sbjct: 31 ASFAKMAPEGSGGGGGRCSKSETDTGFLGFRPTSVDPALRRRRRGPRNKKRGWRRLAQEP 90
Query: 185 LGLEVDQFLEDVRLQERTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKP 364
LGLEVDQFLEDVRLQERTSGGL+SEAPDEKLFFVDTGSK KEL++KRTRSQKRSLLLKKP
Sbjct: 91 LGLEVDQFLEDVRLQERTSGGLVSEAPDEKLFFVDTGSKRKELDKKRTRSQKRSLLLKKP 150
Query: 365 LRIDLVLENTSKVPAPKDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNP 544
LR+DL+LENTSKVPAPKDVLAHQ+PNA+KL+RKEQLWEKLAKQGELPR+VRRAQARLLNP
Sbjct: 151 LRVDLILENTSKVPAPKDVLAHQIPNARKLKRKEQLWEKLAKQGELPRDVRRAQARLLNP 210
Query: 545 PAARAKPGPQDAAGRPFYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQA 724
P +AKPGPQD RPFYDLWAKDNPL+ PL GQD FFLEQTKKKGVKRP HLH KPSQ
Sbjct: 211 PKTKAKPGPQDTVERPFYDLWAKDNPLEQPLAGQDTFFLEQTKKKGVKRPPHLHIKPSQV 270
Query: 725 PAVEVTPAGASYNPSFEDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQ 904
PAVEVTPAGASYNPSFEDHQTLL AAHEVELQRQKE EKLERQLALP +EQ ATQESAFQ
Sbjct: 271 PAVEVTPAGASYNPSFEDHQTLLLAAHEVELQRQKEAEKLERQLALPASEQPATQESAFQ 330
Query: 905 EMCQXXXXXXXXXXXXAQGQDRGLEAGGNQAKGPKASPA-VRLASL 1039
EMCQ +G D EAGG Q +G + SP VRLA++
Sbjct: 331 EMCQGLLEESDGEEEPGEGPDTVPEAGGKQTEGAETSPTPVRLAAM 376
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,934,673
Number of extensions: 944236
Number of successful extensions: 6173
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6129
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000087
(1039 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056525.2| glioma tumor suppressor candidate region gene 2... 476 e-134
>ref|NP_056525.2| glioma tumor suppressor candidate region gene 2 protein [Homo
sapiens].
Length = 478
Score = 476 bits (1225), Expect = e-134
Identities = 246/311 (79%), Positives = 257/311 (82%)
Frame = +2
Query: 53 RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
R SKS+ADSGFLGLRPTSVDPAL LAQEPLGLEVDQFLEDVRLQE
Sbjct: 12 RSSKSDADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEVDQFLEDVRLQE 71
Query: 233 RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
RTSGGL+SEAP+EKLFFVDTGSK K L +KRT+ QK+SLLLKKPLR+DL+LENTSKVPAP
Sbjct: 72 RTSGGLLSEAPNEKLFFVDTGSKEKGLTKKRTKVQKKSLLLKKPLRVDLILENTSKVPAP 131
Query: 413 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNP A RAKPGPQD RP
Sbjct: 132 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAKPGPQDTVERP 191
Query: 593 FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
FYDLWA DNPLD PL GQD FFLEQTKKKGVKRP LHTKPSQAPAVEV PAGASYNPSF
Sbjct: 192 FYDLWASDNPLDRPLVGQDEFFLEQTKKKGVKRPARLHTKPSQAPAVEVAPAGASYNPSF 251
Query: 773 EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQXXXXXXXXXXXX 952
EDHQTLL AAHEVELQRQKE EKLERQLALP EQAATQES FQE+C+
Sbjct: 252 EDHQTLLSAAHEVELQRQKEAEKLERQLALPATEQAATQESTFQELCEGLLEESDGEGEP 311
Query: 953 AQGQDRGLEAG 985
QG+ G EAG
Sbjct: 312 GQGE--GPEAG 320
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,844,314
Number of extensions: 899352
Number of successful extensions: 5328
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5289
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000087
(1039 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598592.2| glioma tumor suppressor candidate region gene 2... 439 e-123
>ref|NP_598592.2| glioma tumor suppressor candidate region gene 2 [Mus musculus].
Length = 484
Score = 439 bits (1130), Expect = e-123
Identities = 219/288 (76%), Positives = 243/288 (84%)
Frame = +2
Query: 53 RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
R S+S+ADSGFLGLRPTSVDPAL LA+EPLGLEVDQFLEDVRLQE
Sbjct: 12 RGSRSQADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAEEPLGLEVDQFLEDVRLQE 71
Query: 233 RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
RT+GGL++EAP+EKLFFVDTG K KE +KRT QK+S L+KPLR+DL LEN SK+PAP
Sbjct: 72 RTTGGLLAEAPNEKLFFVDTGFKRKEPRKKRTLVQKKSQRLQKPLRVDLALENHSKIPAP 131
Query: 413 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
KD+LAHQVPNAKKLRRKE+LWEKLAKQGELPR+VR+AQARLL+PP +AKPGPQD RP
Sbjct: 132 KDILAHQVPNAKKLRRKEELWEKLAKQGELPRDVRKAQARLLSPPTPKAKPGPQDIIERP 191
Query: 593 FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
FYDLW DNPLD PL GQDAFFLEQTKKKGV+RPQ LH KPSQ PAVEV PAGASYNP+F
Sbjct: 192 FYDLWNPDNPLDTPLIGQDAFFLEQTKKKGVRRPQRLHIKPSQVPAVEVIPAGASYNPTF 251
Query: 773 EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQ 916
EDHQ LLR AHEVELQR+KE EKLERQLALP +EQAATQES F+EMC+
Sbjct: 252 EDHQALLREAHEVELQREKEAEKLERQLALPTSEQAATQESVFREMCE 299
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,127,438
Number of extensions: 718896
Number of successful extensions: 4174
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4109
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000087
(1039 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356008.1| PREDICTED: glioma tumor suppressor candidate... 577 e-165
>ref|XP_003356008.1| PREDICTED: glioma tumor suppressor candidate region gene 2 protein
[Sus scrofa].
Length = 483
Score = 577 bits (1487), Expect = e-165
Identities = 296/329 (89%), Positives = 300/329 (91%)
Frame = +2
Query: 53 RCSKSEADSGFLGLRPTSVDPALXXXXXXXXXXXXXXXXLAQEPLGLEVDQFLEDVRLQE 232
RCSKSEADSGFLGLRPTSVDPAL LAQEPLGLEVDQFLEDVRLQE
Sbjct: 12 RCSKSEADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEVDQFLEDVRLQE 71
Query: 233 RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 412
RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP
Sbjct: 72 RTSGGLISEAPDEKLFFVDTGSKNKELNRKRTRSQKRSLLLKKPLRIDLVLENTSKVPAP 131
Query: 413 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 592
KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP
Sbjct: 132 KDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPPAARAKPGPQDAAGRP 191
Query: 593 FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 772
FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF
Sbjct: 192 FYDLWAKDNPLDGPLEGQDAFFLEQTKKKGVKRPQHLHTKPSQAPAVEVTPAGASYNPSF 251
Query: 773 EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQXXXXXXXXXXXX 952
EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQ
Sbjct: 252 EDHQTLLRAAHEVELQRQKEVEKLERQLALPPAEQAATQESAFQEMCQGLLEESDGEGEL 311
Query: 953 AQGQDRGLEAGGNQAKGPKASPAVRLASL 1039
A+GQDRGLEAGG+QA+G +ASPAVRLASL
Sbjct: 312 AEGQDRGLEAGGDQAEGAEASPAVRLASL 340
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,648,806
Number of extensions: 596765
Number of successful extensions: 3809
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3763
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000087
(1039 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 478 e-132
>Sscrofa_Chr06
|| Length = 157765593
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Plus
Query: 3 gtgcttcctttaacaagatggcggcgggaagtagtgccgctggcggtgcgcgctgctcaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973593 gtgcttcctttaacaagatggcggcgggaagtagtgccgctggcggtgcgcgctgctcaa 48973652
Query: 63 aaagcgaggccgactctggcttcctggggctgcggcccacttcggtggacccagccttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973653 aaagcgaggccgactctggcttcctggggctgcggcccacttcggtggacccagccttga 48973712
Query: 123 ggcggcggcggcgaggcccaagaaataagaagcgggggtggcggcggctcgctcaggagc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973713 ggcggcggcggcgaggcccaagaaataagaagcgggggtggcggcggctcgctcaggagc 48973772
Query: 183 cgctgggactggaggtcgatcagttcctggaggacgtgcggctgcaggagcgcacgagcg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48973773 cgctgggactggaggtcgatcagttcctggaggacgtgcggctgcaggagcgcacgagcg 48973832
Query: 243 g 243
|
Sbjct: 48973833 g 48973833
Score = 396 bits (200), Expect = e-108
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 418 cgtccttgcccaccaggtccccaatgccaagaagctccggcggaaggagcagctatggga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977248 cgtccttgcccaccaggtccccaatgccaagaagctccggcggaaggagcagctatggga 48977307
Query: 478 gaagctggccaagcagggcgagctgccccgggaggtgcgcagggcgcaggcccggctcct 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977308 gaagctggccaagcagggcgagctgccccgggaggtgcgcagggcgcaggcccggctcct 48977367
Query: 538 caaccctcctgcggccagagccaagcctgggccccaggatgccgccgggcgtcccttcta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977368 caaccctcctgcggccagagccaagcctgggccccaggatgccgccgggcgtcccttcta 48977427
Query: 598 tgacctctgggccaaagaca 617
||||||||||||||||||||
Sbjct: 48977428 tgacctctgggccaaagaca 48977447
Score = 240 bits (121), Expect = 1e-60
Identities = 145/153 (94%)
Strand = Plus / Plus
Query: 887 caggagtccgccttccaggagatgtgccaggggctgctggaggaatcggacggggagggg 946
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 48979918 caggagtccgccttccaggagatgtgccaggggctgctggaggagtcggacggggagggg 48979977
Query: 947 gagctggcccagggccaggaccgggggctggaggctggaggaaaccaggccaaaggacca 1006
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct: 48979978 gagctggccgagggccaggaccgggggctggaggctggaggagaccaggccgaaggagca 48980037
Query: 1007 aaggcctcgccagcggtccgcctggcttccttg 1039
||||||||||||| ||||||||||| ||||||
Sbjct: 48980038 gaggcctcgccagccgtccgcctggcctccttg 48980070
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 307 agagctgaacaggaagaggaccagaagccagaagaggtccctgcttctcaagaaacccct 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48976614 agagctgaacaggaagaggaccagaagccagaagaggtccctgcttctcaagaaacccct 48976673
Query: 367 tcggatcgacctcgtcctagagaacacatccaaggtccctgcccccaaaga 417
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48976674 tcggatcgacctcgtcctagagaacacatccaaggtccctgcccccaaaga 48976724
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 782 cagactctgctccgtgcggcccatgaggtagagctgcagcggcagaaagaggtggagaag 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48979729 cagactctgctccgtgcggcccatgaggtagagctgcagcggcagaaagaggtggagaag 48979788
Query: 842 ctggagcggcagctggccctgccccccgccgagcaggccgccacccagg 890
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48979789 ctggagcggcagctggccctgccccccgccgagcaggccgccacccagg 48979837
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 687 agcggcctcagcatctccacaccaagccctcccaggcgcctgctgtggaggtgacccccg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48978357 agcggcctcagcatctccacaccaagccctcccaggcgcctgctgtggaggtgacccccg 48978416
Query: 747 cgggagcctcctacaacccgtcctttgaggaccaccag 784
||||||||||||||||||||||||||||||||||||||
Sbjct: 48978417 cgggagcctcctacaacccgtcctttgaggaccaccag 48978454
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 618 acccgctggatgggcccctggaaggccaggacgcgttcttcctggagcagaccaagaaga 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48977713 acccgctggatgggcccctggaaggccaggacgcgttcttcctggagcagaccaagaaga 48977772
Query: 678 agggggtgaag 688
|||||||||||
Sbjct: 48977773 agggggtgaag 48977783
Score = 131 bits (66), Expect = 8e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 243 gtggcttgatatcagaggccccggatgaaaaactcttcttcgtggacactggctccaaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48974260 gtggcttgatatcagaggccccggatgaaaaactcttcttcgtggacactggctccaaga 48974319
Query: 303 ataaag 308
||||||
Sbjct: 48974320 ataaag 48974325
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,968,298
Number of extensions: 264
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 8
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)