Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000101
(1925 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094716.1| hypothetical protein LOC615685 [Bos taurus]. 264 2e-70
>ref|NP_001094716.1| hypothetical protein LOC615685 [Bos taurus].
Length = 131
Score = 264 bits (675), Expect = 2e-70
Identities = 125/131 (95%), Positives = 125/131 (95%)
Frame = +3
Query: 255 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 434
MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
Sbjct: 1 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60
Query: 435 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPE 614
EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLP FEEYSADVEEEEPE
Sbjct: 61 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120
Query: 615 ADHPQMGVSQQ 647
ADHPQMGVSQQ
Sbjct: 121 ADHPQMGVSQQ 131
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,801,280
Number of extensions: 1345085
Number of successful extensions: 3364
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3364
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 532
Effective length of database: 14,074,782
Effective search space: 7487784024
Effective search space used: 7487784024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000101
(1925 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854335.1| PREDICTED: hypothetical protein XP_849242 [Cani... 230 4e-60
>ref|XP_854335.1| PREDICTED: hypothetical protein XP_849242 [Canis familiaris].
Length = 119
Score = 230 bits (586), Expect = 4e-60
Identities = 109/115 (94%), Positives = 109/115 (94%)
Frame = +3
Query: 303 TPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSESEDCLPFLQLAQDYISS 482
TPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSESEDCLPFLQLAQDYISS
Sbjct: 5 TPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSESEDCLPFLQLAQDYISS 64
Query: 483 CGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPEADHPQMGVSQQ 647
CGKKTLHEVLEKVFKSFRPLLGLP FEEYSADVEEEEPEADHPQMGVSQQ
Sbjct: 65 CGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEADHPQMGVSQQ 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,323,086
Number of extensions: 1381348
Number of successful extensions: 3490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3486
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 532
Effective length of database: 15,240,880
Effective search space: 8108148160
Effective search space used: 8108148160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000101
(1925 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_690006.2| hypothetical protein LOC222166 [Homo sapiens]. 264 2e-70
>ref|NP_690006.2| hypothetical protein LOC222166 [Homo sapiens].
Length = 131
Score = 264 bits (675), Expect = 2e-70
Identities = 125/131 (95%), Positives = 125/131 (95%)
Frame = +3
Query: 255 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 434
MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
Sbjct: 1 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60
Query: 435 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPE 614
EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLP FEEYSADVEEEEPE
Sbjct: 61 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120
Query: 615 ADHPQMGVSQQ 647
ADHPQMGVSQQ
Sbjct: 121 ADHPQMGVSQQ 131
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,306,251
Number of extensions: 1367761
Number of successful extensions: 3260
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3260
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 532
Effective length of database: 14,704,088
Effective search space: 7822574816
Effective search space used: 7822574816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000101
(1925 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080905.1| hypothetical protein LOC68235 [Mus musculus]. 133 6e-31
>ref|NP_080905.1| hypothetical protein LOC68235 [Mus musculus].
Length = 134
Score = 133 bits (334), Expect = 6e-31
Identities = 71/124 (57%), Positives = 77/124 (62%)
Frame = +1
Query: 283 RRNGAXXXXXXXXXXXXXXAGWISTQTPASPSTCCVRITAAGTIFTCGVRARTACLFCS* 462
RR+G AGW ST T ASPST CVR TAA T FTCG RARTAC CS
Sbjct: 3 RRSGVPARPLSSSPPRRRSAGWTSTPTRASPSTYCVRTTAAATAFTCGARARTACPSCSW 62
Query: 463 HRITSPPAAXXXXXXXXXXXXXXXDLYWGFQMQMTTRLKNTVQMWKRRSQRPTTPKWGSV 642
+ITS PAA DL WGFQ QMTTRLK+TV+MW+RRSQR TT KWGSV
Sbjct: 63 PKITSLPAARRPSMKSWKKSSNPSDLCWGFQTQMTTRLKSTVRMWRRRSQRRTTRKWGSV 122
Query: 643 SSRL 654
SS+L
Sbjct: 123 SSKL 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,530,149
Number of extensions: 1169732
Number of successful extensions: 2823
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2822
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 533
Effective length of database: 12,373,671
Effective search space: 6595166643
Effective search space used: 6595166643
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000101
(1925 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134859.2| PREDICTED: UPF0452 protein C7orf41 homolog [... 264 1e-70
>ref|XP_003134859.2| PREDICTED: UPF0452 protein C7orf41 homolog [Sus scrofa].
Length = 131
Score = 264 bits (675), Expect = 1e-70
Identities = 125/131 (95%), Positives = 125/131 (95%)
Frame = +3
Query: 255 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 434
MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
Sbjct: 1 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60
Query: 435 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPE 614
EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLP FEEYSADVEEEEPE
Sbjct: 61 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120
Query: 615 ADHPQMGVSQQ 647
ADHPQMGVSQQ
Sbjct: 121 ADHPQMGVSQQ 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,894,537
Number of extensions: 871542
Number of successful extensions: 2171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2170
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 536
Effective length of database: 8,729,747
Effective search space: 4679144392
Effective search space used: 4679144392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000101
(1925 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 2422 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 2422 bits (1222), Expect = 0.0
Identities = 1339/1388 (96%), Gaps = 3/1388 (0%)
Strand = Plus / Minus
Query: 540 ttactggggcttccagatgcagatgacgacgcgtttgaagaatacagtgcagatgtggaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156484 ttactggggcttccagatgcagatgacgacgcgtttgaagaatacagtgcagatgtggaa 47156425
Query: 600 gaggaggagccagaggccgaccacccccaaatgggggtcagtcagcagtagacttccaag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156424 gaggaggagccagaggccgaccacccccaaatgggggtcagtcagcagtagacttccaag 47156365
Query: 660 ggctcccacctgagaaggagcgtgagccccgtggtacccgaggggggtttacaagctcct 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156364 ggctcccacctgagaaggagcgtgagccccgtggtacccgaggggggtttacaagctcct 47156305
Query: 720 gggttagcattttgcattagcacttcgaaacaggacggctgactcccagcatccaaatta 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156304 gggttagcattttgcattagcacttcgaaacaggacggctgactcccagcatccaaatta 47156245
Query: 780 aaaatgaaatacctttttaatgaccacaaaatatctgggatgagctttgctcagaagtga 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156244 aaaatgaaatacctttttaatgaccacaaaatatctgggatgagctttgctcagaagtga 47156185
Query: 840 cctgaattttactcccatttcggtgggtctctgtggagttgtcttgttagcctttgccgt 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156184 cctgaattttactcccatttcggtgggtctctgtggagttgtcttgttagcctttgccgt 47156125
Query: 900 tttgaatttggagtccgtcttgtggctgactgttctctcttgggtttatgttggagagct 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156124 tttgaatttggagtccgtcttgtggctgactgttctctcttgggtttatgttggagagct 47156065
Query: 960 aacatttgctgactcgactgtcgagaactctgaatgtattaaggatgtgttttgagtcat 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156064 aacatttgctgactcgactgtcgagaactctgaatgtattaaggatgtgttttgagtcat 47156005
Query: 1020 cgcaggtgacattatcgagggaaagcatggcagagaagaaatgcagtctgcactttttat 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156004 cgcaggtgacattatcgagggaaagcatggcagagaagaaatgcagtctgcactttttat 47155945
Query: 1080 gtaccttttaagtgtatgtaagtggaaggtttgcttataaagcatgagttttaataccta 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155944 gtaccttttaagtgtatgtaagtggaaggtttgcttataaagcatgagttttaataccta 47155885
Query: 1140 gtcattaaactgcacaagtacaaatacaagggcagnnnnnnngaattacttagttttgga 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 47155884 gtcattaaactgcacaagtacaaatacaagggcagaaaaaaagaattacttagttttgga 47155825
Query: 1200 ttaagagggtaagagaggcaaaggagccttcgtttaagtgttctgccattactaaggtac 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155824 ttaagagggtaagagaggcaaaggagccttcgtttaagtgttctgccattactaaggtac 47155765
Query: 1260 ctggatatatagcagctggttcatggttaggtataaacatgacttgcatgttcgattatt 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155764 ctggatatatagcagctggttcatggttaggtataaacatgacttgcatgttcgattatt 47155705
Query: 1320 ttaaaacatgctgattccaaagccacttttaaaggctaatagtggagaatataaatgggg 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155704 ttaaaacatgctgattccaaagccacttttaaaggctaatagtggagaatataaatgggg 47155645
Query: 1380 tgacgtaaatcattgactttaaaatgtttctaagccaccccacctatgaaatgaaacatt 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155644 tgacgtaaatcattgactttaaaatgtttctaagccaccccacctatgaaatgaaacatt 47155585
Query: 1440 gaccttctctctttataacaagatggcaacttgttaaatcacgaaaacatcccaaatcca 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155584 gaccttctctctttataacaagatggcaacttgttaaatcacgaaaacatcccaaatcca 47155525
Query: 1500 agtgccacttaaactttgaggccatagataaatttaaaggggaaaataaaccaggattnn 1559
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 47155524 agtgccacttaaactttgaagccatagataaatttaaaggggaaaataaaccaggattaa 47155465
Query: 1560 nnnnnntgttttttagatatgatggaatccttctttactttcttaatctatcttttattc 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155464 aaaaaatgttttttagatatgatggaatccttctttactttcttaatctatcttttattc 47155405
Query: 1620 cttnnnnnnnnngtcaagaaaatgatcccactgtgtaatttattaaacaattgtaagtgc 1679
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155404 cttaaaaaaaaagtcaagaaaatgatcccactgtgtaatttattaaacaattgtaagtgc 47155345
Query: 1680 tttaaggaacctaattgcagtgaagttttaaagtggtgtgaaggtagggggtctttgaat 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155344 tttaaggaacctaattgcagtgaagttttaaagtggtgtgaaggtagggggtctttgaat 47155285
Query: 1740 cctgngttagcttggttcggaggggacgttttaatgatcaatatcctcccgac-actaac 1798
|||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 47155284 cctgggttagcttggttcagaggggacgttttaatgatcaatatcct-ccgacaactaac 47155226
Query: 1799 tggaaacactgctggcatcatttancancagagacgtggcnnnnnnnnnnnnnnnatact 1858
|||||||||||||||||||||||| || |||||||||||| |||||
Sbjct: 47155225 tggaaacactgctggcatcatttagcagcagagacgtggcgggggtgggggggggatact 47155166
Query: 1859 ttgtaacactaacgtggaattattt-aaacattcattttttctagatccttctacatctc 1917
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 47155165 ttgtaacactaacgtggaattatttaaaacattcatttttcttagatccttctacatctc 47155106
Query: 1918 tggttcaa 1925
||||||||
Sbjct: 47155105 tggttcaa 47155098
Score = 244 bits (123), Expect = 2e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 417 cacgtgtggagtgagagcgaggactgcctgccttttttgcagctagcacaggattacatc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47174850 cacgtgtggagtgagagcgaggactgcctgccttttttgcagctagcacaggattacatc 47174791
Query: 477 tcctcctgcggcaagaagacgctccatgaagtcttggaaaaagtcttcaagtctttcaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47174790 tcctcctgcggcaagaagacgctccatgaagtcttggaaaaagtcttcaagtctttcaga 47174731
Query: 537 cct 539
|||
Sbjct: 47174730 cct 47174728
Score = 157 bits (79), Expect = 3e-35
Identities = 92/95 (96%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 1 gggcgcggcgccgagccgtccctggtcgccgcccaccctttt-cacacagcatgtaaaca 59
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 47185646 gggcgcggcgccgagccgtccctggtcgccgcccacccagttacacacagcatgtaaaca 47185587
Query: 60 gtccccgccgggaggagccccgggagcggagggaa 94
|||||||||||||||||||||||||||||||||||
Sbjct: 47185586 gtccccgccgggaggagccccgggagcggagggaa 47185552
Score = 63.9 bits (32), Expect = 3e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 251 caggatggatttccagcagctggctgacgttg 282
||||||||||||||||||||||||||||||||
Sbjct: 47185395 caggatggatttccagcagctggctgacgttg 47185364
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,391,903
Number of extensions: 414
Number of successful extensions: 414
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 8
Length of query: 1925
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1903
Effective length of database: 2,808,408,574
Effective search space: 5344401516322
Effective search space used: 5344401516322
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)