Animal-Genome cDNA 20110601C-000101


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000101
         (1925 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001094716.1| hypothetical protein LOC615685 [Bos taurus].      264   2e-70

>ref|NP_001094716.1| hypothetical protein LOC615685 [Bos taurus].
          Length = 131

 Score =  264 bits (675), Expect = 2e-70
 Identities = 125/131 (95%), Positives = 125/131 (95%)
 Frame = +3

Query: 255 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 434
           MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
Sbjct: 1   MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60

Query: 435 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPE 614
           EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLP      FEEYSADVEEEEPE
Sbjct: 61  EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120

Query: 615 ADHPQMGVSQQ 647
           ADHPQMGVSQQ
Sbjct: 121 ADHPQMGVSQQ 131


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,801,280
Number of extensions: 1345085
Number of successful extensions: 3364
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3364
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 532
Effective length of database: 14,074,782
Effective search space: 7487784024
Effective search space used: 7487784024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000101
         (1925 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854335.1| PREDICTED: hypothetical protein XP_849242 [Cani...   230   4e-60

>ref|XP_854335.1| PREDICTED: hypothetical protein XP_849242 [Canis familiaris].
          Length = 119

 Score =  230 bits (586), Expect = 4e-60
 Identities = 109/115 (94%), Positives = 109/115 (94%)
 Frame = +3

Query: 303 TPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSESEDCLPFLQLAQDYISS 482
           TPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSESEDCLPFLQLAQDYISS
Sbjct: 5   TPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSESEDCLPFLQLAQDYISS 64

Query: 483 CGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPEADHPQMGVSQQ 647
           CGKKTLHEVLEKVFKSFRPLLGLP      FEEYSADVEEEEPEADHPQMGVSQQ
Sbjct: 65  CGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPEADHPQMGVSQQ 119


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,323,086
Number of extensions: 1381348
Number of successful extensions: 3490
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3486
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 532
Effective length of database: 15,240,880
Effective search space: 8108148160
Effective search space used: 8108148160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000101
         (1925 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_690006.2| hypothetical protein LOC222166 [Homo sapiens].       264   2e-70

>ref|NP_690006.2| hypothetical protein LOC222166 [Homo sapiens].
          Length = 131

 Score =  264 bits (675), Expect = 2e-70
 Identities = 125/131 (95%), Positives = 125/131 (95%)
 Frame = +3

Query: 255 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 434
           MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
Sbjct: 1   MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60

Query: 435 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPE 614
           EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLP      FEEYSADVEEEEPE
Sbjct: 61  EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120

Query: 615 ADHPQMGVSQQ 647
           ADHPQMGVSQQ
Sbjct: 121 ADHPQMGVSQQ 131


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,306,251
Number of extensions: 1367761
Number of successful extensions: 3260
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3260
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 532
Effective length of database: 14,704,088
Effective search space: 7822574816
Effective search space used: 7822574816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000101
         (1925 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080905.1| hypothetical protein LOC68235 [Mus musculus].        133   6e-31

>ref|NP_080905.1| hypothetical protein LOC68235 [Mus musculus].
          Length = 134

 Score =  133 bits (334), Expect = 6e-31
 Identities = 71/124 (57%), Positives = 77/124 (62%)
 Frame = +1

Query: 283 RRNGAXXXXXXXXXXXXXXAGWISTQTPASPSTCCVRITAAGTIFTCGVRARTACLFCS* 462
           RR+G               AGW ST T ASPST CVR TAA T FTCG RARTAC  CS 
Sbjct: 3   RRSGVPARPLSSSPPRRRSAGWTSTPTRASPSTYCVRTTAAATAFTCGARARTACPSCSW 62

Query: 463 HRITSPPAAXXXXXXXXXXXXXXXDLYWGFQMQMTTRLKNTVQMWKRRSQRPTTPKWGSV 642
            +ITS PAA               DL WGFQ QMTTRLK+TV+MW+RRSQR TT KWGSV
Sbjct: 63  PKITSLPAARRPSMKSWKKSSNPSDLCWGFQTQMTTRLKSTVRMWRRRSQRRTTRKWGSV 122

Query: 643 SSRL 654
           SS+L
Sbjct: 123 SSKL 126


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,530,149
Number of extensions: 1169732
Number of successful extensions: 2823
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2822
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 533
Effective length of database: 12,373,671
Effective search space: 6595166643
Effective search space used: 6595166643
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000101
         (1925 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003134859.2| PREDICTED: UPF0452 protein C7orf41 homolog [...   264   1e-70

>ref|XP_003134859.2| PREDICTED: UPF0452 protein C7orf41 homolog [Sus scrofa].
          Length = 131

 Score =  264 bits (675), Expect = 1e-70
 Identities = 125/131 (95%), Positives = 125/131 (95%)
 Frame = +3

Query: 255 MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 434
           MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES
Sbjct: 1   MDFQQLADVAEKWCSNTPFELIATEETERRMDFYADPGVSFYVLCPDNGCGDNFHVWSES 60

Query: 435 EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPXXXXXXFEEYSADVEEEEPE 614
           EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLP      FEEYSADVEEEEPE
Sbjct: 61  EDCLPFLQLAQDYISSCGKKTLHEVLEKVFKSFRPLLGLPDADDDAFEEYSADVEEEEPE 120

Query: 615 ADHPQMGVSQQ 647
           ADHPQMGVSQQ
Sbjct: 121 ADHPQMGVSQQ 131


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,894,537
Number of extensions: 871542
Number of successful extensions: 2171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2170
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 536
Effective length of database: 8,729,747
Effective search space: 4679144392
Effective search space used: 4679144392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000101
         (1925 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr18                                                        2422   0.0  

>Sscrofa_Chr18 
||          Length = 61220071

 Score = 2422 bits (1222), Expect = 0.0
 Identities = 1339/1388 (96%), Gaps = 3/1388 (0%)
 Strand = Plus / Minus

                                                                            
Query: 540      ttactggggcttccagatgcagatgacgacgcgtttgaagaatacagtgcagatgtggaa 599
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156484 ttactggggcttccagatgcagatgacgacgcgtttgaagaatacagtgcagatgtggaa 47156425

                                                                            
Query: 600      gaggaggagccagaggccgaccacccccaaatgggggtcagtcagcagtagacttccaag 659
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156424 gaggaggagccagaggccgaccacccccaaatgggggtcagtcagcagtagacttccaag 47156365

                                                                            
Query: 660      ggctcccacctgagaaggagcgtgagccccgtggtacccgaggggggtttacaagctcct 719
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156364 ggctcccacctgagaaggagcgtgagccccgtggtacccgaggggggtttacaagctcct 47156305

                                                                            
Query: 720      gggttagcattttgcattagcacttcgaaacaggacggctgactcccagcatccaaatta 779
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156304 gggttagcattttgcattagcacttcgaaacaggacggctgactcccagcatccaaatta 47156245

                                                                            
Query: 780      aaaatgaaatacctttttaatgaccacaaaatatctgggatgagctttgctcagaagtga 839
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156244 aaaatgaaatacctttttaatgaccacaaaatatctgggatgagctttgctcagaagtga 47156185

                                                                            
Query: 840      cctgaattttactcccatttcggtgggtctctgtggagttgtcttgttagcctttgccgt 899
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156184 cctgaattttactcccatttcggtgggtctctgtggagttgtcttgttagcctttgccgt 47156125

                                                                            
Query: 900      tttgaatttggagtccgtcttgtggctgactgttctctcttgggtttatgttggagagct 959
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156124 tttgaatttggagtccgtcttgtggctgactgttctctcttgggtttatgttggagagct 47156065

                                                                            
Query: 960      aacatttgctgactcgactgtcgagaactctgaatgtattaaggatgtgttttgagtcat 1019
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156064 aacatttgctgactcgactgtcgagaactctgaatgtattaaggatgtgttttgagtcat 47156005

                                                                            
Query: 1020     cgcaggtgacattatcgagggaaagcatggcagagaagaaatgcagtctgcactttttat 1079
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47156004 cgcaggtgacattatcgagggaaagcatggcagagaagaaatgcagtctgcactttttat 47155945

                                                                            
Query: 1080     gtaccttttaagtgtatgtaagtggaaggtttgcttataaagcatgagttttaataccta 1139
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155944 gtaccttttaagtgtatgtaagtggaaggtttgcttataaagcatgagttttaataccta 47155885

                                                                            
Query: 1140     gtcattaaactgcacaagtacaaatacaagggcagnnnnnnngaattacttagttttgga 1199
                |||||||||||||||||||||||||||||||||||       ||||||||||||||||||
Sbjct: 47155884 gtcattaaactgcacaagtacaaatacaagggcagaaaaaaagaattacttagttttgga 47155825

                                                                            
Query: 1200     ttaagagggtaagagaggcaaaggagccttcgtttaagtgttctgccattactaaggtac 1259
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155824 ttaagagggtaagagaggcaaaggagccttcgtttaagtgttctgccattactaaggtac 47155765

                                                                            
Query: 1260     ctggatatatagcagctggttcatggttaggtataaacatgacttgcatgttcgattatt 1319
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155764 ctggatatatagcagctggttcatggttaggtataaacatgacttgcatgttcgattatt 47155705

                                                                            
Query: 1320     ttaaaacatgctgattccaaagccacttttaaaggctaatagtggagaatataaatgggg 1379
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155704 ttaaaacatgctgattccaaagccacttttaaaggctaatagtggagaatataaatgggg 47155645

                                                                            
Query: 1380     tgacgtaaatcattgactttaaaatgtttctaagccaccccacctatgaaatgaaacatt 1439
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155644 tgacgtaaatcattgactttaaaatgtttctaagccaccccacctatgaaatgaaacatt 47155585

                                                                            
Query: 1440     gaccttctctctttataacaagatggcaacttgttaaatcacgaaaacatcccaaatcca 1499
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155584 gaccttctctctttataacaagatggcaacttgttaaatcacgaaaacatcccaaatcca 47155525

                                                                            
Query: 1500     agtgccacttaaactttgaggccatagataaatttaaaggggaaaataaaccaggattnn 1559
                ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  
Sbjct: 47155524 agtgccacttaaactttgaagccatagataaatttaaaggggaaaataaaccaggattaa 47155465

                                                                            
Query: 1560     nnnnnntgttttttagatatgatggaatccttctttactttcttaatctatcttttattc 1619
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155464 aaaaaatgttttttagatatgatggaatccttctttactttcttaatctatcttttattc 47155405

                                                                            
Query: 1620     cttnnnnnnnnngtcaagaaaatgatcccactgtgtaatttattaaacaattgtaagtgc 1679
                |||         ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155404 cttaaaaaaaaagtcaagaaaatgatcccactgtgtaatttattaaacaattgtaagtgc 47155345

                                                                            
Query: 1680     tttaaggaacctaattgcagtgaagttttaaagtggtgtgaaggtagggggtctttgaat 1739
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47155344 tttaaggaacctaattgcagtgaagttttaaagtggtgtgaaggtagggggtctttgaat 47155285

                                                                            
Query: 1740     cctgngttagcttggttcggaggggacgttttaatgatcaatatcctcccgac-actaac 1798
                |||| ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 47155284 cctgggttagcttggttcagaggggacgttttaatgatcaatatcct-ccgacaactaac 47155226

                                                                            
Query: 1799     tggaaacactgctggcatcatttancancagagacgtggcnnnnnnnnnnnnnnnatact 1858
                |||||||||||||||||||||||| || ||||||||||||               |||||
Sbjct: 47155225 tggaaacactgctggcatcatttagcagcagagacgtggcgggggtgggggggggatact 47155166

                                                                            
Query: 1859     ttgtaacactaacgtggaattattt-aaacattcattttttctagatccttctacatctc 1917
                ||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||
Sbjct: 47155165 ttgtaacactaacgtggaattatttaaaacattcatttttcttagatccttctacatctc 47155106

                        
Query: 1918     tggttcaa 1925
                ||||||||
Sbjct: 47155105 tggttcaa 47155098



 Score =  244 bits (123), Expect = 2e-61
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                            
Query: 417      cacgtgtggagtgagagcgaggactgcctgccttttttgcagctagcacaggattacatc 476
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47174850 cacgtgtggagtgagagcgaggactgcctgccttttttgcagctagcacaggattacatc 47174791

                                                                            
Query: 477      tcctcctgcggcaagaagacgctccatgaagtcttggaaaaagtcttcaagtctttcaga 536
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47174790 tcctcctgcggcaagaagacgctccatgaagtcttggaaaaagtcttcaagtctttcaga 47174731

                   
Query: 537      cct 539
                |||
Sbjct: 47174730 cct 47174728



 Score =  157 bits (79), Expect = 3e-35
 Identities = 92/95 (96%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1        gggcgcggcgccgagccgtccctggtcgccgcccaccctttt-cacacagcatgtaaaca 59
                ||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||
Sbjct: 47185646 gggcgcggcgccgagccgtccctggtcgccgcccacccagttacacacagcatgtaaaca 47185587

                                                   
Query: 60       gtccccgccgggaggagccccgggagcggagggaa 94
                |||||||||||||||||||||||||||||||||||
Sbjct: 47185586 gtccccgccgggaggagccccgggagcggagggaa 47185552



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 251      caggatggatttccagcagctggctgacgttg 282
                ||||||||||||||||||||||||||||||||
Sbjct: 47185395 caggatggatttccagcagctggctgacgttg 47185364


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,391,903
Number of extensions: 414
Number of successful extensions: 414
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 8
Length of query: 1925
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1903
Effective length of database: 2,808,408,574
Effective search space: 5344401516322
Effective search space used: 5344401516322
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)