Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000130
(1214 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776804.1| 40S ribosomal protein SA [Bos taurus]. 555 e-158
Alignment gi|XP_002695310.1| PREDICTED: ribosomal protein SA-like [Bos ta... 270 2e-72
>ref|NP_776804.1| 40S ribosomal protein SA [Bos taurus].
Length = 295
Score = 555 bits (1431), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGNFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP+TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_002695310.1| PREDICTED: ribosomal protein SA-like [Bos taurus].
Length = 168
Score = 270 bits (690), Expect = 2e-72
Identities = 139/150 (92%), Positives = 142/150 (94%), Gaps = 2/150 (1%)
Frame = +3
Query: 369 YIINLKRTWE--KLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT 542
Y +NL + + KLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT
Sbjct: 13 YGMNLDQRFNICKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT 72
Query: 543 PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 722
PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN
Sbjct: 73 PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 132
Query: 723 NKGAHSVGLMWWMLAREVLRMRGTISREHP 812
NKGAHSVGLMWWMLAREVLRMRGTISR P
Sbjct: 133 NKGAHSVGLMWWMLAREVLRMRGTISRFIP 162
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,987,499
Number of extensions: 1363323
Number of successful extensions: 4608
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4587
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,207,134
Effective search space: 4247933066
Effective search space used: 4247933066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000130
(1214 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860784.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860746.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860712.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_534228.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_850029.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_533909.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860584.1| PREDICTED: similar to 40S ribosomal protein SA ... 551 e-157
Alignment gi|XP_860646.1| PREDICTED: similar to 40S ribosomal protein SA ... 549 e-156
Alignment gi|XP_866616.1| PREDICTED: similar to 40S ribosomal protein SA ... 543 e-154
Alignment gi|XP_866603.1| PREDICTED: similar to 40S ribosomal protein SA ... 543 e-154
>ref|XP_860784.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 14 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860746.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 13 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860712.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 12 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_534228.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 1 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_850029.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 2 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_533909.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 1 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860584.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 9 [Canis familiaris].
Length = 276
Score = 551 bits (1419), Expect = e-157
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP +GEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPE-------------------EGEWTAPAPEFTA 221
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 222 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 276
>ref|XP_860646.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 11 [Canis familiaris].
Length = 310
Score = 549 bits (1414), Expect = e-156
Identities = 275/310 (88%), Positives = 275/310 (88%), Gaps = 15/310 (4%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPT---------------EDWSAQPTTEDWSAAPTAQAT 1085
TQPEVADWSEGVQVPSVPIQQFPT EDWSAQP TEDWSAAPTAQAT
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTGIGLALRVCPLKCVFEDWSAQPATEDWSAAPTAQAT 300
Query: 1086 EWVGTTTEWS 1115
EWVGTTTEWS
Sbjct: 301 EWVGTTTEWS 310
>ref|XP_866616.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 5 [Canis familiaris].
Length = 295
Score = 543 bits (1400), Expect = e-154
Identities = 270/295 (91%), Positives = 270/295 (91%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPL YVDIAIPCNNKG HSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGVHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVL MRGTIS EHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLLMRGTISCEHPWEVMPDLYFYRDPEEIEKEEQATAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTE S
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTECS 295
>ref|XP_866603.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 4 [Canis familiaris].
Length = 295
Score = 543 bits (1400), Expect = e-154
Identities = 270/295 (91%), Positives = 270/295 (91%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPL YVDIAIPCNNKG HSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGVHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVL MRGTIS EHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLLMRGTISCEHPWEVMPDLYFYRDPEEIEKEEQATAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTE S
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTECS 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,897,546
Number of extensions: 1378938
Number of successful extensions: 4905
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 4811
Number of HSP's successfully gapped: 37
Length of query: 404
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 299
Effective length of database: 15,374,224
Effective search space: 4596892976
Effective search space used: 4596892976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000130
(1214 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002286.2| 40S ribosomal protein SA [Homo sapiens]. 556 e-158
Alignment gi|NP_001012321.1| 40S ribosomal protein SA [Homo sapiens]. 556 e-158
>ref|NP_002286.2| 40S ribosomal protein SA [Homo sapiens].
Length = 295
Score = 556 bits (1432), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TT+WS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
>ref|NP_001012321.1| 40S ribosomal protein SA [Homo sapiens].
Length = 295
Score = 556 bits (1432), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TT+WS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,009,272
Number of extensions: 1356626
Number of successful extensions: 4556
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4529
Number of HSP's successfully gapped: 2
Length of query: 404
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 299
Effective length of database: 14,835,944
Effective search space: 4435947256
Effective search space used: 4435947256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000130
(1214 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086186.1| PREDICTED: 40S ribosomal protein SA-like [Mu... 555 e-158
Alignment gi|NP_035159.3| 40S ribosomal protein SA [Mus musculus]. 555 e-158
Alignment gi|XP_921694.1| PREDICTED: 40S ribosomal protein SA-like isofor... 527 e-150
>ref|XP_003086186.1| PREDICTED: 40S ribosomal protein SA-like [Mus musculus].
Length = 295
Score = 555 bits (1430), Expect = e-158
Identities = 273/295 (92%), Positives = 273/295 (92%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
>ref|NP_035159.3| 40S ribosomal protein SA [Mus musculus].
Length = 295
Score = 555 bits (1430), Expect = e-158
Identities = 273/295 (92%), Positives = 273/295 (92%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
>ref|XP_921694.1| PREDICTED: 40S ribosomal protein SA-like isoform 1 [Mus musculus].
Length = 295
Score = 527 bits (1357), Expect = e-150
Identities = 260/295 (88%), Positives = 264/295 (89%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MS AL+VLQMKEEDV KFLAAGTHLGGTNL+FQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSRALNVLQMKEEDVFKFLAAGTHLGGTNLEFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARA+VAIENP DVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAVVAIENPPDVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVD+AIPCNNKGAHSVGLM WMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDMAIPCNNKGAHSVGLMKWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVL MRGTISREHPWEVMPDLYFYRDP FQGEWT PAPEFTA
Sbjct: 181 EVLCMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTTPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
QPEVA WSEGVQ PSVPIQQFP EDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVAHWSEGVQAPSVPIQQFPMEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,493,085
Number of extensions: 1144989
Number of successful extensions: 3808
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 3
Length of query: 404
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 300
Effective length of database: 12,493,815
Effective search space: 3748144500
Effective search space used: 3748144500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000130
(1214 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032223.1| 40S ribosomal protein SA [Sus scrofa]. 561 e-160
>ref|NP_001032223.1| 40S ribosomal protein SA [Sus scrofa].
Length = 295
Score = 561 bits (1445), Expect = e-160
Identities = 276/295 (93%), Positives = 276/295 (93%)
Frame = +3
Query: 231 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 410
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 411 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 590
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 591 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 770
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 771 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 950
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 951 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 1115
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 295
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,138,936
Number of extensions: 904112
Number of successful extensions: 3061
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3044
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 303
Effective length of database: 8,829,335
Effective search space: 2675288505
Effective search space used: 2675288505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000130
(1214 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1624 0.0
Sscrofa_Chr17 1285 0.0
Sscrofa_Chr01 1187 0.0
Sscrofa_Chr03 940 0.0
Sscrofa_Chr12 932 0.0
gb|GL894387.2| Sus scrofa unplaced genomic scaffold ChrUScaf2271 844 0.0
Sscrofa_Chr14 829 0.0
Sscrofa_Chr09 829 0.0
Sscrofa_Chr02 615 e-173
Sscrofa_Chr04 599 e-168
>Sscrofa_Chr06
|| Length = 157765593
Score = 1624 bits (819), Expect = 0.0
Identities = 979/1030 (95%), Gaps = 8/1030 (0%)
Strand = Plus / Plus
Query: 153 cctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaact 212
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 113006061 cctttccgcgctgctcagaccggggtccatagggcgttgttcttgattcccgtcgtaact 113006120
Query: 213 taaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 272
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 113006121 taaagggaaactttcacaatgtccagagccctcgatgtcttgcaaatgaaagaggaggat 113006180
Query: 273 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 113006181 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaagg 113006240
Query: 333 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 392
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 113006241 gaacagtacatctacaaaaggaaaagtgatggcatctatgtcataaatctgcagagaacc 113006300
Query: 393 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 452
|||||||| |||||||||| |||||||||| | |||||||||||||||||||| ||||||
Sbjct: 113006301 tgggagaagcttctgttggtggctcgtgccgttgttgccattgaaaacccagctgatgtc 113006360
Query: 453 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 512
|||||||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 113006361 agtgtcatatcctccaggaacactggccagcgagctgtgct-----ttgctgctgctact 113006415
Query: 513 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 572
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113006416 ggagccactcctattgctggcctcttcactcctggaaccttcactaaccagatccaggca 113006475
Query: 573 gccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctc 632
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 113006476 gccttccgggagccgagacttctggttgttactgatcccagggctgaccaccagcctctc 113006535
Query: 633 acagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctg 692
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113006536 acagaggcctcttacgttaacctgcctgccattgctctgtgtaacacagactcacctctg 113006595
Query: 693 cgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatg 752
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 113006596 cgttatgtggacattgccatcccgtgcaacaaaaagggagctctctcagtgggtctgatg 113006655
Query: 753 tggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccca 812
|||||||||||| ||| ||||||||||||||||||||||| || |||| | |||||||||
Sbjct: 113006656 tggtggatgctcacccaggaagttctgcgcatgcgtggcatcacctcctgtgaacaccca 113006715
Query: 813 tgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagag 872
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113006716 tgggaagtcatgcctgacctctccttctacagagatcctgaagagattgaaaaggaagag 113006775
Query: 873 caggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 932
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113006776 caggcttcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 113006835
Query: 933 gctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtg 992
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 113006836 gctcctga--tcactgccactcaacctgaggtggcaaattggtccgaaggtgtgcaggtg 113006893
Query: 993 ccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaa 1052
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113006894 ccttctgtgcccatccagcaattccctgctgaagattggagtgctcagcctaccactgaa 113006953
Query: 1053 gattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtgg 1112
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct: 113006954 gattggtctgcagttcccactgtgcaggccactgaatgggtaggaacagccactgagttg 113007013
Query: 1113 tcttaagttcttccatgaactctt-attttctaaaaatagaagtgagttggatgtaaaat 1171
|||||||||||||||||||||||| | |||||||||||||||||| |||| || ||||||
Sbjct: 113007014 tcttaagttcttccatgaactcttaagtttctaaaaatagaagtgggttgaatataaaat 113007073
Query: 1172 aaacattttc 1181
||||| ||||
Sbjct: 113007074 aaacagtttc 113007083
Score = 1624 bits (819), Expect = 0.0
Identities = 979/1030 (95%), Gaps = 8/1030 (0%)
Strand = Plus / Plus
Query: 153 cctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaact 212
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 113111723 cctttccgcgctgctcagaccggggtccatagggcgttgttcttgattcccgtcgtaact 113111782
Query: 213 taaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 272
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 113111783 taaagggaaactttcacaatgtccagagccctcgatgtcttgcaaatgaaagaggaggat 113111842
Query: 273 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 332
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 113111843 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaagg 113111902
Query: 333 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 392
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 113111903 gaacagtacatctacaaaaggaaaagtgatggcatctatgtcataaatctgcagagaacc 113111962
Query: 393 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 452
|||||||| |||||||||| |||||||||| | |||||||||||||||||||| ||||||
Sbjct: 113111963 tgggagaagcttctgttggtggctcgtgccgttgttgccattgaaaacccagctgatgtc 113112022
Query: 453 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 512
|||||||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 113112023 agtgtcatatcctccaggaacactggccagcgagctgtgct-----ttgctgctgctact 113112077
Query: 513 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 572
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113112078 ggagccactcctattgctggcctcttcactcctggaaccttcactaaccagatccaggca 113112137
Query: 573 gccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctc 632
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 113112138 gccttccgggagccgagacttctggttgttactgatcccagggctgaccaccagcctctc 113112197
Query: 633 acagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctg 692
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113112198 acagaggcctcttacgttaacctgcctgccattgctctgtgtaacacagactcacctctg 113112257
Query: 693 cgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatg 752
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 113112258 cgttatgtggacattgccatcccgtgcaacaaaaagggagctctctcagtgggtctgatg 113112317
Query: 753 tggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccca 812
|||||||||||| ||| ||||||||||||||||||||||| || |||| | |||||||||
Sbjct: 113112318 tggtggatgctcacccaggaagttctgcgcatgcgtggcatcacctcctgtgaacaccca 113112377
Query: 813 tgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagag 872
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113112378 tgggaagtcatgcctgacctctccttctacagagatcctgaagagattgaaaaggaagag 113112437
Query: 873 caggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 932
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113112438 caggcttcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 113112497
Query: 933 gctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtg 992
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 113112498 gctcctga--tcactgccactcaacctgaggtggcaaattggtccgaaggtgtgcaggtg 113112555
Query: 993 ccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaa 1052
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113112556 ccttctgtgcccatccagcaattccctgctgaagattggagtgctcagcctaccactgaa 113112615
Query: 1053 gattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtgg 1112
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct: 113112616 gattggtctgcagttcccactgtgcaggccactgaatgggtaggaacagccactgagttg 113112675
Query: 1113 tcttaagttcttccatgaactctt-attttctaaaaatagaagtgagttggatgtaaaat 1171
|||||||||||||||||||||||| | |||||||||||||||||| |||| || ||||||
Sbjct: 113112676 tcttaagttcttccatgaactcttaagtttctaaaaatagaagtgggttgaatataaaat 113112735
Query: 1172 aaacattttc 1181
||||| ||||
Sbjct: 113112736 aaacagtttc 113112745
Score = 474 bits (239), Expect = e-131
Identities = 616/745 (82%), Gaps = 35/745 (4%)
Strand = Plus / Minus
Query: 239 agccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaac 298
|||||| ||||||||||| || || || |||||| ||||||| | ||||||||||||
Sbjct: 134197925 agcccttgatgtcctgcatataaaggaagaggat---ctcaagtcctttgcagcaggaat 134197869
Query: 299 ccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaaaag 358
|||| | |||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 134197868 ccacttaggtggcactgaccttgacttccaagtggaacagtacatctataaaaggaaaag 134197809
Query: 359 tgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggctcg 418
| ||||| ||||||||||||| ||||||||||||||| ||| ||||||||||| ||||
Sbjct: 134197808 taatggcctctacatcataaacctgaagagaacctggaagatgcttctgttggcagctca 134197749
Query: 419 tgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatactgg 478
|| ||| | ||| || ||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 134197748 tgtcattgctgctatggaaaacccagctgatatcagtgtcatatcctccaggaacactgg 134197689
Query: 479 ccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccgctt 538
||| |||||||||||| |||||||||||||| ||||| |||
Sbjct: 134197688 ccaaggagctgtgctgacgtttgctgctgcca------------------ctggcttctt 134197647
Query: 539 cactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctggt 598
| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134197646 ccctcctggaaccttcgctaaccagatccaggcagctttccgggagccaagacttctgga 134197587
Query: 599 ggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcc 658
|||||| ||||||||||| ||||||| ||||| ||||||||||| || ||||||
Sbjct: 134197586 ggttaccaatcccagggcttcccaccagtctctcctagaggcctcttgcattcgcctgcc 134197527
Query: 659 taccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatcccgtg 718
| ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| | ||
Sbjct: 134197526 tgccattgctccgtgtaacacagactctcctctgcgttatgtggacattgctatctcatg 134197467
Query: 719 caacaacaagggagctcactcagtgggtc-tgatgtggtggatgctcgcccgggaagttc 777
||||||||||||||| |||| | |||| ||||||| || |||| ||||
Sbjct: 134197466 caacaacaagggagc-------atgggacatgat------gatgctcacctgggaggttc 134197420
Query: 778 tgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctctact 837
|| |||||| | |||||||| | ||||||||| ||| ||||||||||| | || ||
Sbjct: 134197419 tgagcatgctctgtgccatctcctgtgaacacccacaggaggtcatgcctgatcgctgct 134197360
Query: 838 tctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtga 897
||| |||||| ||||||| || ||||||| |||||||| ||||||||||| |||||||
Sbjct: 134197359 tcttgggagatcttgaagaggttaaaaaggaggagcaggcagcagctgagaaagctgtga 134197300
Query: 898 ccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactcaac 957
|||||||||||||||||||| ||||||| || |||||| ||||||||||||| | ||| |
Sbjct: 134197299 ccaaggaggaatttcagggtaaatggacggctccagcttctgagttcactgctattcagc 134197240
Query: 958 ctgaggtggcagattggtccgaagg 982
||||||||||||| ||||| |||||
Sbjct: 134197239 ctgaggtggcagactggtctgaagg 134197215
Score = 333 bits (168), Expect = 1e-88
Identities = 580/714 (81%), Gaps = 20/714 (2%)
Strand = Plus / Plus
Query: 252 ctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggc 311
||||||||||| || | ||| |||||||| |||||| ||| | || |||||| | ||||
Sbjct: 111604905 ctgcaaatgaaggaaggggaagtcctcaaattccttacagaggaaatccacctagatggc 111604964
Query: 312 accaaccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctac 371
||||||| ||||||||||| |||||| | | ||||| |||||| || |||||||||
Sbjct: 111604965 gccaacctcaacttccaaatgcaacagtcc--ccacaaagggaaaactggtggcatctat 111605022
Query: 372 atcataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgcc 431
|| ||| ||| || |||| ||||||||| ||||| || ||| ||||||| | | ||
Sbjct: 111605023 gtcgtaagtctaaaaagaatctgggagaaggttctg---gcagcttgtgccattgatacc 111605079
Query: 432 attgaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtg 491
||||||||| | | ||||||| |||||||||||| |||| ||||| |||| |||||||
Sbjct: 111605080 attgaaaactcgactgatgtcactgtcatatcctctaggagtactgaacagcaagctgtg 111605139
Query: 492 ctgaagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaacc 551
|| |||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct: 111605140 ctaaagtttgctgctgccactggagccactcctattgctcactgtgccgttcctggaact 111605199
Query: 552 ttcactaaccagatccaggcagccttccgggagccaagacttctggtggttactgatccc 611
||||||| |||||||| |||| ||||| ||||| |||||||||| |||||||||||||
Sbjct: 111605200 ttcactaggcagatccaagcaggcttccaggagcagagacttctgg-ggttactgatccc 111605258
Query: 612 agggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctg 671
||||||||||| |||||||||| ||||||||||||| |||| ||||||||
Sbjct: 111605259 agggctgaccagcagcctctca-----------tatgttaacctgcttacctttgctctg 111605307
Query: 672 tgtaacacagactcacctctgcgttatgtggacattgccatcccgtgcaa--caacaagg 729
|||||||||||||| ||||| | | | ||||||||||||| || ||||| ||||||||
Sbjct: 111605308 agtaacacagactcaactctgtgctctatggacattgccattccctgcaattcaacaagg 111605367
Query: 730 gagctcactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtg 789
|||||||||||||||||||||||||||||||| || |||||||||||| | || |||
Sbjct: 111605368 aagctcactcagtgggtctgatgtggtggatgccagct-gggaagttctgcccttgtgtg 111605426
Query: 790 gcaccatctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatc 849
|| | ||||||| || |||||| ||| |||||||| | ||||||||| ||| ||| |
Sbjct: 111605427 acatcctctcccgtgagcacccacaggaggtcatgccccatctctacttccacacagacc 111605486
Query: 850 ctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaat 909
| ||||||| |||| ||||||||||||| || ||| | || ||||||||||||||||||
Sbjct: 111605487 cggaagagactgaagaggaagagcaggctgccgctaaaaacactgtgaccaaggaggaat 111605546
Query: 910 ttcagggtgaatggactgcgccagctcctgagttcactgccactcaacctgagg 963
||| |||| ||||||| | | ||||||||| || ||||| ||| || ||||||
Sbjct: 111605547 ttcggggtaaatggacagttctagctcctgaatttactgctacttaaactgagg 111605600
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 38 gaacgcagctagctgcgagaattaatgtgaattgcaggacacattgatcatcgacacttc 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872658 gaacgcagctagctgcgagaattaatgtgaattgcaggacacattgatcatcgacacttc 872599
Query: 98 gaacgcacttgcggccccgggttcctcccggggctacgcctgtctgagcgtc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872598 gaacgcacttgcggccccgggttcctcccggggctacgcctgtctgagcgtc 872547
Score = 103 bits (52), Expect = 2e-19
Identities = 152/180 (84%), Gaps = 4/180 (2%)
Strand = Plus / Minus
Query: 451 tcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcca 510
||||||||| |||||| |||| ||||||||| | ||||| | ||||||||||||| ||
Sbjct: 138656572 tcagtgtcacatcctctgggaacactggccagagggctgttccaaagtttgctgctgtca 138656513
Query: 511 ctggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccagg 570
| ||||| || |||||||||| | || || ||||||| || |||||||||||| |||| |
Sbjct: 138656512 c-ggagctacccctattgctg-ctgcctctctcctggcacgttcactaaccaggtccaag 138656455
Query: 571 cagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctc 630
||||||||| || |||| | ||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 138656454 cagccttccagg-gccacgtctt-tggtggttcctgatcccagggctgcccaccagcctc 138656397
>Sscrofa_Chr17
|| Length = 69701581
Score = 1285 bits (648), Expect = 0.0
Identities = 899/980 (91%), Gaps = 2/980 (0%)
Strand = Plus / Minus
Query: 154 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 213
||||| ||||| ||||||| ||||||||||||| ||||||| || |||| | |||||||
Sbjct: 35639978 ctttctgcgctacccagacaggggtccatacggtgttgttcccgactcccttggtaactt 35639919
Query: 214 aaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatg 273
||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 35639918 aaagggaaactttcacaatatctggagcccttgatgtcctgcaaatgaaagaggaggata 35639859
Query: 274 tcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatgg 333
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
Sbjct: 35639858 tcctcaaattccttgcagcagaaacccacctaagtggcaccaaccttgacttcccaatag 35639799
Query: 334 aacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacct 393
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 35639798 aacagtacatctaccaaaggaaaagtgatggcatctacatcataaatctgaagaaagcct 35639739
Query: 394 gggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtca 453
|||||||| || | |||| |||| |||||| ||||||| |||||||||||| ||||||
Sbjct: 35639738 gggagaaattt-taatggctgctcatgccattgttgccagtgaaaacccagctaatgtca 35639680
Query: 454 gtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccactg 513
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 35639679 gtgtcatatcctccaggaatactgctcagagagctgtgctgaagtttgctgctgccactg 35639620
Query: 514 gagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggcag 573
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||
Sbjct: 35639619 gagccactcctattgctggccgctttattcctggaaccctcactaaccagatccaggtag 35639560
Query: 574 ccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctca 633
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35639559 ccttctgggagccaagacttctggtggttactgatccaagggctgagcaccagcctctca 35639500
Query: 634 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgc 693
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35639499 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactctcctctgc 35639440
Query: 694 gttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgt 753
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct: 35639439 attacgtggacattgctatcccgtgcaacaacaagagagcttgctcagtgggtctgatat 35639380
Query: 754 ggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccat 813
||||| |||| ||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct: 35639379 ggtgggtgcttgcccgggaagttccacgcatgtgtggcaccatctcctgtgaacacccag 35639320
Query: 814 gggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagc 873
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 35639319 aggaagtcatgcctgatctctacttcga-agagatcctgaagagattgaaaaggaagagc 35639261
Query: 874 aggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccag 933
|||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35639260 aggcagctgctgagaaggatgtgaccaaggaggaatttcagggtgaatggactgctccag 35639201
Query: 934 ctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtgc 993
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 35639200 ctcctgagttcactgctactcaacctgaggtggcagattggtctgaaggcctgcaggtgc 35639141
Query: 994 cttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaag 1053
| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 35639140 cctctgtgcccatccagcagttccctactgaagactggagtgctcagcctgccactgaag 35639081
Query: 1054 attggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggt 1113
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 35639080 attggtctgaagctcccacttctcaggccactgaatgggtaggaatgaccactgagtggt 35639021
Query: 1114 cttaagttcttccatgaact 1133
||||||||||||||| ||||
Sbjct: 35639020 cttaagttcttccataaact 35639001
Score = 1285 bits (648), Expect = 0.0
Identities = 899/980 (91%), Gaps = 2/980 (0%)
Strand = Plus / Plus
Query: 154 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 213
||||| ||||| ||||||| ||||||||||||| ||||||| || |||| | |||||||
Sbjct: 35825021 ctttctgcgctacccagacaggggtccatacggtgttgttcccgactcccttggtaactt 35825080
Query: 214 aaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatg 273
||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 35825081 aaagggaaactttcacaatatctggagcccttgatgtcctgcaaatgaaagaggaggata 35825140
Query: 274 tcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatgg 333
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
Sbjct: 35825141 tcctcaaattccttgcagcagaaacccacctaagtggcaccaaccttgacttcccaatag 35825200
Query: 334 aacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacct 393
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 35825201 aacagtacatctaccaaaggaaaagtgatggcatctacatcataaatctgaagaaagcct 35825260
Query: 394 gggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtca 453
|||||||| || | |||| |||| |||||| ||||||| |||||||||||| ||||||
Sbjct: 35825261 gggagaaattt-taatggctgctcatgccattgttgccagtgaaaacccagctaatgtca 35825319
Query: 454 gtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccactg 513
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 35825320 gtgtcatatcctccaggaatactgctcagagagctgtgctgaagtttgctgctgccactg 35825379
Query: 514 gagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggcag 573
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||
Sbjct: 35825380 gagccactcctattgctggccgctttattcctggaaccctcactaaccagatccaggtag 35825439
Query: 574 ccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctca 633
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35825440 ccttctgggagccaagacttctggtggttactgatccaagggctgagcaccagcctctca 35825499
Query: 634 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgc 693
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35825500 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactctcctctgc 35825559
Query: 694 gttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgt 753
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct: 35825560 attacgtggacattgctatcccgtgcaacaacaagagagcttgctcagtgggtctgatat 35825619
Query: 754 ggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccat 813
||||| |||| ||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct: 35825620 ggtgggtgcttgcccgggaagttccacgcatgtgtggcaccatctcctgtgaacacccag 35825679
Query: 814 gggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagc 873
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 35825680 aggaagtcatgcctgatctctacttcga-agagatcctgaagagattgaaaaggaagagc 35825738
Query: 874 aggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccag 933
|||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35825739 aggcagctgctgagaaggatgtgaccaaggaggaatttcagggtgaatggactgctccag 35825798
Query: 934 ctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtgc 993
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 35825799 ctcctgagttcactgctactcaacctgaggtggcagattggtctgaaggcctgcaggtgc 35825858
Query: 994 cttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaag 1053
| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 35825859 cctctgtgcccatccagcagttccctactgaagactggagtgctcagcctgccactgaag 35825918
Query: 1054 attggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggt 1113
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 35825919 attggtctgaagctcccacttctcaggccactgaatgggtaggaatgaccactgagtggt 35825978
Query: 1114 cttaagttcttccatgaact 1133
||||||||||||||| ||||
Sbjct: 35825979 cttaagttcttccataaact 35825998
Score = 555 bits (280), Expect = e-155
Identities = 730/877 (83%), Gaps = 6/877 (0%)
Strand = Plus / Plus
Query: 199 ttcccgtcgtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaa 258
||||| || |||||| |||||| ||||||||||||| || |||| ||||||||||||
Sbjct: 23694315 ttcccatcataactttaagggaaactttcacaatgttgggggccccaaatgtcctgcaaa 23694374
Query: 259 tgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaacc 318
|| ||| ||||||||||| |||||| |||||||||||||| | |||||||||| |
Sbjct: 23694375 gga----ggaagatgtcctcaaattccttacagcaggaacccacttaggtggcaccagct 23694430
Query: 319 ttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataa 378
|||| |||||||||||||||| |||||| |||||| |||||||||||||| |||| |||
Sbjct: 23694431 ttgatttccaaatggaacagtttatctaccaaaggagaagtgatggcatctgcatcttaa 23694490
Query: 379 atctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaa 438
||||| | ||| |||||| | ||| || |||| ||| ||||| | || ||||||||||
Sbjct: 23694491 atctggcgggaatgtgggaggagcttttgatggcagcttgtgcccttgtggccattgaaa 23694550
Query: 439 acccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagt 498
||| || ||||||||| | |||| || |||||| || || || | ||| |||| | |
Sbjct: 23694551 acctaggtaatgtcagtgacctatcgtctaggaatcgtgacccgctaactgggctgca-t 23694609
Query: 499 ttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttcacta 558
||||||||||| ||||||||||||||| |||||| || ||||||||||| | |||||
Sbjct: 23694610 ttgctgctgcctctggagccactcctactgctgggtgcatcactcctggactatccacta 23694669
Query: 559 accagatccaggcagccttccgggagccaagacttctggtggttactgatcccagggctg 618
|||||||||||||||||| | ||||||| ||||| | ||||||||||||||||||||||
Sbjct: 23694670 accagatccaggcagcctcctgggagcccagactcccagtggttactgatcccagggctg 23694729
Query: 619 accaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaaca 678
|||||| |||||| ||||| |||||||||| ||||| | ||||||||||||||
Sbjct: 23694730 cccaccaacctctctcagagttctcttatgttcacctgaccgatgttgctctgtgtaact 23694789
Query: 679 cagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctcact 738
||||| | |||| | ||||||||| ||| ||||| ||||||||||||| | |||||||
Sbjct: 23694790 cagaccctcctccacattatgtggatgttgtcatcctgtgcaacaacaagagggctcact 23694849
Query: 739 cagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatct 798
||||||||||| | |||||||||||| ||| |||||||||| ||||| ||||||||||||
Sbjct: 23694850 cagtgggtctggtatggtggatgctcacccaggaagttctgagcatgtgtggcaccatct 23694909
Query: 799 cccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaagaga 858
||| |||||| ||||| | ||||||||||| ||||||||||||||||||||| || |||
Sbjct: 23694910 cccatgaacactcatggaaggtcatgcctgatctctacttctacagagatcctaaaaaga 23694969
Query: 859 ttgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtg 918
||| |||||||||||||| || |||||||| | |||| |||||||||||||||||||
Sbjct: 23694970 ttggaaaggaagagcaggaggctgctgagaaagtgatgactaaggaggaatttcagggtg 23695029
Query: 919 aatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccg 978
||||||| | ||| |||||||||||||||| | || |||||||| ||||| ||| | |
Sbjct: 23695030 aatggaccactcca-ctcctgagttcactgctgcccagcctgaggttgcagactggcctg 23695088
Query: 979 aaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctc 1038
||||||||||||||| |||||||||||||||| ||||| ||||| ||||||| |||
Sbjct: 23695089 caggtgtgcaggtgccccctgtgcccatccagcatttccccactgacaattggagccctc 23695148
Query: 1039 agcctaccactgaagattggtctgcagctcccactgc 1075
||||| |||| ||||| |||||||| |||||||||||
Sbjct: 23695149 agcctgccaccgaagactggtctgctgctcccactgc 23695185
Score = 107 bits (54), Expect = 1e-20
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 451 tcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcca 510
||||||||| | || ||||||| ||||||| ||||||| ||| |||||||||| ||
Sbjct: 55065239 tcagtgtcacacccaccaggaagactggccggcgagctatgccgaagtttgctctggctg 55065298
Query: 511 ctggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccagg 570
||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct: 55065299 ctggagccactcctatttctggctgcttcgctcctagaaccttcgctaaccagatccagg 55065358
Query: 571 ca 572
||
Sbjct: 55065359 ca 55065360
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 888 aaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcact 947
||||||||| ||| ||||||||||||||| | |||||| || |||||||||||||| |||
Sbjct: 4629093 aaggctgtgcccagggaggaatttcagggaggatggacggctccagctcctgagtttact 4629034
Query: 948 gc 949
||
Sbjct: 4629033 gc 4629032
Score = 61.9 bits (31), Expect = 8e-07
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 568 aggcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagc 627
||||||||||||| ||| ||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 4629380 aggcagccttccgaaagctgagatgtctgggggttgctgatcccagcactgaccaccagc 4629321
Query: 628 ctctcacagaggcct 642
|||||| ||||||||
Sbjct: 4629320 ctctcatagaggcct 4629306
>Sscrofa_Chr01
|| Length = 315321322
Score = 1187 bits (599), Expect = 0.0
Identities = 878/965 (90%), Gaps = 12/965 (1%)
Strand = Plus / Minus
Query: 174 ggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatg 233
||||||||||| |||||||||||||||||| || | ||||||||||| ||||| ||||||
Sbjct: 263614268 ggggtccatacagcgttgttcttgattcccatcatgacttaaagggaaactttgacaatg 263614209
Query: 234 tccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagca 293
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263614208 tctggagcccttgatgtcctgcaaatgaaagaggaggatgtcctcaaattccttgcagca 263614149
Query: 294 ggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaagg 353
|||||||||| |||| ||||||||||||||||||||||| ||||| || || | ||||
Sbjct: 263614148 agaacccacctaggtgtcaccaaccttgacttccaaatggcacagtctatgtaaagaagg 263614089
Query: 354 aaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcg 413
||||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||||| |
Sbjct: 263614088 aaaagggatagcatctatatcataa-tctgaagagaacctgggagaa-cttctgttggtg 263614031
Query: 414 gctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaat 473
||||||||||| ||||||| |||| | ||||| |||||||||||||||||||||||||||
Sbjct: 263614030 gctcgtgccattgttgccactgaagatccagctgatgtcagtgtcatatcctccaggaat 263613971
Query: 474 actggccagcgagctgtgctgaagtttgctgctgccactgg-agccactcctattgctgg 532
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263613970 actggccatcgagctgtgctgaagtttgctgctgccactgggagccactcctattgctgg 263613911
Query: 533 ccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagact 592
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 263613910 ccgcttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaaga-t 263613852
Query: 593 tctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaa 652
||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 263613851 tctggtggtgactgatcccagggctgaccaccagcatctcacagaagtctcttatgttaa 263613792
Query: 653 cctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccat 712
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| |||||
Sbjct: 263613791 cctgcctaccattgctctgtgtaacaaagactctcctctgcattatgcggacatagccat 263613732
Query: 713 cccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccggga 772
||| || |||||| ||| |||||||||||||| |||||| ||| ||||||| ||||||||
Sbjct: 263613731 cccatgaaacaacgaggaagctcactcagtgg-tctgatctggcggatgcttgcccggga 263613673
Query: 773 agttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacct 832
|||||||||||||| |||||||||||| || ||||||| ||||||||||||||| | |
Sbjct: 263613672 agttctgcgcatgcctggcaccatctctcgtgaacaccagtgggaagtcatgcctcattt 263613613
Query: 833 ctacttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggc 892
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 263613612 ttacttctacagagatcctgaagagattgaaaaggaagagcaggcagctgctgagaaggc 263613553
Query: 893 tgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccac 952
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 263613552 tgtgaccaaggaggaatttcagggtgaatggactgctccagctcctgagttcattgctac 263613493
Query: 953 tcaacctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagca 1012
|||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 263613492 tcaacctgagatggcagattggtccagaggcgtgcaggtgccttctgtgcccatccatca 263613433
Query: 1013 attccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccac 1072
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 263613432 gttacctactgaagactggagtgctcagcctaccac-------tggtctgcagctcccac 263613380
Query: 1073 tgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaagttcttccatgaac 1132
||| |||||||||||||| ||||||||| | |||||||| |||||||||||||||| ||
Sbjct: 263613379 tgctcaggccactgaatgcgtaggaacagctactgagtgatcttaagttcttccatagac 263613320
Query: 1133 tctta 1137
|||||
Sbjct: 263613319 tctta 263613315
Score = 1136 bits (573), Expect = 0.0
Identities = 856/951 (90%), Gaps = 12/951 (1%)
Strand = Plus / Minus
Query: 177 gtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatgtcc 236
||||||| ||| ||||||||| |||| || || ||||||||||| ||||||||| ||||
Sbjct: 172599884 gtccatatggctttgttcttggttcctgttgtgacttaaagggaaactttcacattgtct 172599825
Query: 237 ggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcagga 296
|||||||| |||||| || |||||||| |||||||||||||| | ||| |||||||||||
Sbjct: 172599824 ggagcccttgatgtcttgtaaatgaaaaaggaggatgtcctctaattctttgcagcagga 172599765
Query: 297 acccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaaa 356
|||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct: 172599764 acccactgaggtggcaccaggcttgacttcccaatggaacattacatctacaaaaggaaa 172599705
Query: 357 agtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggct 416
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct: 172599704 agcgatggcatctacatcataaatctgaagagaacccgggagaaacttctgtggatggct 172599645
Query: 417 cgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatact 476
|||| | | |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 172599644 cgtgacgttgttgccattgaaaacccagctgatgtcagtgtcacatcctccaggaatact 172599585
Query: 477 ggccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccgc 536
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 172599584 ggccagtgagctatactgaagtttgctgctgccactggagccactcctattgctggccac 172599525
Query: 537 ttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctg 596
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 172599524 ttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaagacttctg 172599465
Query: 597 gtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctg 656
||||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 172599464 gtggttacttatccaagagctgaccaccaacctctcacagaggcctcttatattaacctg 172599405
Query: 657 cctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatcccg 716
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct: 172599404 cctaccattgctctgtgtaacacagactcgcctctgcgttatgtggacaatgccatcctg 172599345
Query: 717 tgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccgggaagtt 776
|||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 172599344 tgcaacaacaagagagctcactcagtgggtctgatgtggtgaatgcttgcccagg----- 172599290
Query: 777 ctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctctac 836
||| |||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 172599289 ------atgtgtggcaccatctcccgtgaacacccatgggaagtcatgcctgatttctac 172599236
Query: 837 ttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtg 896
|||||||||||||||||||||||||||||||| ||| |||| || ||||||| |||||||
Sbjct: 172599235 ttctacagagatcctgaagagattgaaaaggaggaggaggcagcggctgagatggctgtg 172599176
Query: 897 accaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactcaa 956
|||||||||||| |||||||||||| || ||| |||| ||||||||||||||| ||||||
Sbjct: 172599175 accaaggaggaacttcagggtgaatagaatgctccaggtcctgagttcactgctactcaa 172599116
Query: 957 cctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaattc 1016
||||||||||||||||||||| |||| ||||||||||||||| | || ||||||| |||
Sbjct: 172599115 cctgaggtggcagattggtccaaaggcatgcaggtgccttctgggtccttccagcagttc 172599056
Query: 1017 cctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgcg 1076
||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 172599055 cctactgaagactggagtgctcagcct-gcaccgaagattgctctgcagctcccactttt 172598997
Query: 1077 caggccactgaatgggtaggaacaaccactgagtggtcttaagttcttcca 1127
|||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 172598996 caggccactgaatgggtaggaaaaaccactgagtggtccaaagttcttcca 172598946
Score = 159 bits (80), Expect = 4e-36
Identities = 184/216 (85%), Gaps = 2/216 (0%)
Strand = Plus / Minus
Query: 257 aatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaa 316
|||||| ||||||||||||||||| |||||| || ||||||||||| ||||| |||||
Sbjct: 150365707 aatgaaggaggaggatgtcctcaaattccttacatcaggaacccactcaggtggtaccaa 150365648
Query: 317 ccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcat 376
|||||| |||||||||||||||| ||||||||||||||||| ||||||| | ||| ||||
Sbjct: 150365647 ccttgatttccaaatggaacagt-catctacaaaaggaaaaatgatggcct-tacctcat 150365590
Query: 377 aaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattga 436
| | ||||||||||||||||||| |||||| || |||| |||||| ||||||||| |
Sbjct: 150365589 tactttgaagagaacctgggagaagcttctgccagctgctcctgccattgttgccattta 150365530
Query: 437 aaacccagccgatgtcagtgtcatatcctccaggaa 472
||||| || || ||||| ||| ||||||||||||
Sbjct: 150365529 aaaccttgctgaggtcagggtcccatcctccaggaa 150365494
Score = 143 bits (72), Expect = 3e-31
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 210 acttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggag 269
||||||||||| ||||| ||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 35664465 acttaaagggaaacttttgcaatgtcaggagcccttgatgtcctgcatataaaggaggag 35664524
Query: 270 gatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaa 329
|||| || || |||||||||||||||||| | | ||||||||| |||||||||||||
Sbjct: 35664525 gatgctcttaaactccttgcagcaggaacccccttaagtggcaccagccttgacttccaa 35664584
Query: 330 atggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaa 385
| |||||| |||| | ||||||||||| |||||||||||| || |||||||||||
Sbjct: 35664585 gtagaacagaacatttgcaaaaggaaaaatgatggcatctatattataaatctgaa 35664640
Score = 79.8 bits (40), Expect = 3e-12
Identities = 210/264 (79%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 324 ttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctg 383
|||||||||||||| |||||| | |||||||||||||||||| | | ||| ||| |||
Sbjct: 131820792 ttccaaatggaacactacatcagccaaaggaaaagtgatggcaccgatatcttaagtcta 131820851
Query: 384 aagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaaccca 443
|||||||||| ||||| |||| |||| | || ||| || | | ||||| |||||||
Sbjct: 131820852 aagagaacctcagagaagattctcctggcagttcctgctattgctaccatttaaaacccc 131820911
Query: 444 gccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgct 503
| || ||||| | ||||||||||||| | |||||| | | ||||| | |||||||||
Sbjct: 131820912 actgaggtcagggccatatcctccaggtgcagtggcca-ccatctgtgttaaagtttgct 131820970
Query: 504 gctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccag 563
|||| |||| |||||||| || | || || ||||||| ||| ||||||| |||| |||
Sbjct: 131820971 gctgtcactagagccactactcct-cttgcggcttcacatctgcaaccttccctaagcag 131821029
Query: 564 atccaggcagccttccgggagcca 587
||||| | ||||||||||||||||
Sbjct: 131821030 atccaagtagccttccgggagcca 131821053
Score = 79.8 bits (40), Expect = 3e-12
Identities = 210/264 (79%), Gaps = 2/264 (0%)
Strand = Plus / Minus
Query: 324 ttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctg 383
|||||||||||||| |||||| | |||||||||||||||||| | | ||| ||| |||
Sbjct: 131893995 ttccaaatggaacactacatcagccaaaggaaaagtgatggcaccgatatcttaagtcta 131893936
Query: 384 aagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaaccca 443
|||||||||| ||||| |||| |||| | || ||| || | | ||||| |||||||
Sbjct: 131893935 aagagaacctcagagaagattctcctggcagttcctgctattgctaccatttaaaacccc 131893876
Query: 444 gccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgct 503
| || ||||| | ||||||||||||| | |||||| | | ||||| | |||||||||
Sbjct: 131893875 actgaggtcagggccatatcctccaggtgcagtggcca-ccatctgtgttaaagtttgct 131893817
Query: 504 gctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccag 563
|||| |||| |||||||| || | || || ||||||| ||| ||||||| |||| |||
Sbjct: 131893816 gctgtcactagagccactactcct-cttgcggcttcacatctgcaaccttccctaagcag 131893758
Query: 564 atccaggcagccttccgggagcca 587
||||| | ||||||||||||||||
Sbjct: 131893757 atccaagtagccttccgggagcca 131893734
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 549 accttcactaaccagatccaggcagccttccgggagccaagacttc 594
|||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 150365454 accttccctaaccagatccaggcatccttccgggagtcaagacttc 150365409
>Sscrofa_Chr03
|| Length = 144787322
Score = 940 bits (474), Expect = 0.0
Identities = 735/817 (89%), Gaps = 10/817 (1%)
Strand = Plus / Plus
Query: 166 cccagaccggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactt 225
||||||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||
Sbjct: 38173001 cccagacaggggtccatacagcgttgtccttgattcccactgtaacttaaagggaaactg 38173060
Query: 226 tcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttcc 285
||||||||||| |||||||| | ||||||||||||||||||||||| |||||||| |||
Sbjct: 38173061 tcacaatgtccagagccctcaaagtcctgcaaatgaaagaggaggaggtcctcaaattct 38173120
Query: 286 ttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatct 345
||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct: 38173121 ttgcagcaggaacccacctaggtgacacc----ttgacttccaaatggaacagtacatct 38173176
Query: 346 acaaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttc 405
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 38173177 acaaaaggaaaagtgatggcatctacagcataaatctgaagagaacctgggagaagcttc 38173236
Query: 406 tgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcct 465
|||||| |||| |||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 38173237 ggttggcagctcctgccattgttgccattgagaacccagctgatgtcagtgtcatatcct 38173296
Query: 466 ccaggaatactggccagcgagctgtgctgaagtttgctgctgccactggagccactccta 525
||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||
Sbjct: 38173297 ccaggaatactggccagcgagctgtgctgaagtttgctgctgccactagcgtcacgccta 38173356
Query: 526 ttgctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagc 585
|||||||| ||||||||||||||||||||||||||||| || ||||||||| | |||||
Sbjct: 38173357 gtgctggcctcttcactcctggaaccttcactaaccaga-cccggcagcctt-ctggagc 38173414
Query: 586 caagacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcctctt 645
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct: 38173415 caagacttctggtggttactgaccccagggctgaccaccagcatctcacaga-gcctctt 38173473
Query: 646 atgttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggaca 705
||||||||||||||||||||||||| ||| ||||||| ||||| | ||| |||||||
Sbjct: 38173474 tcattaacctgcctaccattgctctgtgcaacgcagactctcctctacattacgtggaca 38173533
Query: 706 ttgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcg 765
|||||| || || || ||||||||||||||||||||||||||| |||||||||||
Sbjct: 38173534 ttgccagtccatg---cagtaagggagctcactcagtgggtctgatggggtggatgctca 38173590
Query: 766 cccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgc 825
|| ||||| ||||| ||| |||||||||||| | |||||||||||||| |||||||
Sbjct: 38173591 cctaggaagatctgcatgtgcctggcaccatctctcatgaacacccatgggaggtcatgc 38173650
Query: 826 ctgacctctacttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctg 885
|||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct: 38173651 ctgatctctgcttctacagagatcctgaagagactgaaaaggaagagcaggcagcagccg 38173710
Query: 886 agaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttca 945
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 38173711 agaaggctgtgaccaaggaggaatttcagggtgaatggtctgctccacctcctgagttca 38173770
Query: 946 ctgccactcaacctgaggtggcagattggtccgaagg 982
|||| |||||||||||||||||||| |||||| ||||
Sbjct: 38173771 ctgctactcaacctgaggtggcagactggtccaaagg 38173807
Score = 932 bits (470), Expect = 0.0
Identities = 767/864 (88%), Gaps = 19/864 (2%)
Strand = Plus / Minus
Query: 154 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 213
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 139808191 ctttccgcgctgcccagactggggtccacacggcgttgttcttgattcccgtggtaactt 139808132
Query: 214 aaa-gggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 272
||| |||| |||||| ||||||| | |||||||||||||| ||||| | |||||||
Sbjct: 139808131 aaaagggaaactttcgcaatgtctgcagccctcgatgtccagcaaa-----gcggaggat 139808077
Query: 273 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 332
||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 139808076 gtctgcaggttccttgcagcaggaacccaccttgctggcaccaaccttgacttccacatg 139808017
Query: 333 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 392
||||||||| || |||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct: 139808016 gaacagtacctccacaaaaggaaaagtgatggcatttacatcagaaatcggaagagaacc 139807957
Query: 393 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 452
|||||||| ||||||||||| |||| |||||| |||||||| | | ||||||| || |||
Sbjct: 139807956 tgggagaagcttctgttggcagctcttgccattgttgccatggcagacccagctgaggtc 139807897
Query: 453 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 512
||||||| ||||| ||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 139807896 agtgtcacctcctctaggaatatcggccagtgggctgtgctgaagtttgctgctgccact 139807837
Query: 513 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 572
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 139807836 ggagcccctcctattgctggctgcttcactcctggaaccttccctaaccagatccaggca 139807777
Query: 573 gccttccgggagccaagacttctggtggttactgatcccagggctga-ccaccagcctct 631
|||||| |||||||||||||||||||||| || |||||||||||||| || || ||||||
Sbjct: 139807776 gccttctgggagccaagacttctggtggtgaccgatcccagggctgacccccccgcctct 139807717
Query: 632 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 691
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 139807716 cacagaggcctcctgtgttaacctgcgtaccattgctctgtgtaacacagactcgcctct 139807657
Query: 692 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 751
||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 139807656 gcgttatgtggacatcgccatcccgagcaaccacaagggagctcactcagtgggtccgat 139807597
Query: 752 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 811
||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||| |||
Sbjct: 139807596 gtggtagatgctcgcctgggaagttctgcgcatgcgtggcgccatcacccgtgaaccccc 139807537
Query: 812 atgggaagtca---tgcctgacctctacttctacagagatcctgaagagattgaaaagga 868
||||||| || ||||||||||| || ||||||||| ||||||||||||||| ||||
Sbjct: 139807536 gtgggaagccaggtggcctgacctctcctgctacagagaccctgaagagattgaagagga 139807477
Query: 869 agagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgc 928
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139807476 agagcaggcagtggcggagaaggctgtgaccaaggaggaatttcagggtgaatggactgt 139807417
Query: 929 gccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgca 988
|||||||| | |||| |||| ||||||||| ||| |||| ||||| |||||
Sbjct: 139807416 gccagctcttcggttccctgctactcaacct---------gatgggtctgaaggcgtgca 139807366
Query: 989 ggtgccttctgtgcccatccagca 1012
|||||| |||||||||||||||||
Sbjct: 139807365 ggtgccctctgtgcccatccagca 139807342
Score = 129 bits (65), Expect = 4e-27
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 1057 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtctt 1116
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 139807324 ggtctgcagctcccactgctcaggccactgaatgggtaggaacaaccactgagtggtctg 139807265
Query: 1117 aagttcttccatgaactctta 1137
||||||||||| ||||||||
Sbjct: 139807264 aagttcttccacaaactctta 139807244
Score = 87.7 bits (44), Expect = 1e-14
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 1047 actgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccact 1106
|||||||| |||||||||||| ||||||| ||||| |||||||||||||||| || ||||
Sbjct: 38173850 actgaagactggtctgcagctgccactgctcaggctactgaatgggtaggaataatcact 38173909
Query: 1107 gagtggtcttaa 1118
||| ||||||||
Sbjct: 38173910 gaggggtcttaa 38173921
>Sscrofa_Chr12
|| Length = 63588571
Score = 932 bits (470), Expect = 0.0
Identities = 767/864 (88%), Gaps = 19/864 (2%)
Strand = Plus / Minus
Query: 154 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 213
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 54882901 ctttccgcgctgcccagactggggtccacacggcgttgttcttgattcccgtggtaactt 54882842
Query: 214 aaa-gggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 272
||| |||| |||||| ||||||| | |||||||||||||| ||||| | |||||||
Sbjct: 54882841 aaaagggaaactttcgcaatgtctgcagccctcgatgtccagcaaa-----gcggaggat 54882787
Query: 273 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 332
||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 54882786 gtctgcaggttccttgcagcaggaacccaccttgctggcaccaaccttgacttccacatg 54882727
Query: 333 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 392
||||||||| || |||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct: 54882726 gaacagtacctccacaaaaggaaaagtgatggcatttacatcagaaatcggaagagaacc 54882667
Query: 393 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 452
|||||||| ||||||||||| |||| |||||| |||||||| | | ||||||| || |||
Sbjct: 54882666 tgggagaagcttctgttggcagctcttgccattgttgccatggcagacccagctgaggtc 54882607
Query: 453 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 512
||||||| ||||| ||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 54882606 agtgtcacctcctctaggaatatcggccagtgggctgtgctgaagtttgctgctgccact 54882547
Query: 513 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 572
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 54882546 ggagcccctcctattgctggctgcttcactcctggaaccttccctaaccagatccaggca 54882487
Query: 573 gccttccgggagccaagacttctggtggttactgatcccagggctga-ccaccagcctct 631
|||||| |||||||||||||||||||||| || |||||||||||||| || || ||||||
Sbjct: 54882486 gccttctgggagccaagacttctggtggtgaccgatcccagggctgacccccccgcctct 54882427
Query: 632 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 691
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 54882426 cacagaggcctcctgtgttaacctgcgtaccattgctctgtgtaacacagactcgcctct 54882367
Query: 692 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 751
||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 54882366 gcgttatgtggacatcgccatcccgagcaaccacaagggagctcactcagtgggtccgat 54882307
Query: 752 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 811
||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||| |||
Sbjct: 54882306 gtggtagatgctcgcctgggaagttctgcgcatgcgtggcgccatcacccgtgaaccccc 54882247
Query: 812 atgggaagtca---tgcctgacctctacttctacagagatcctgaagagattgaaaagga 868
||||||| || ||||||||||| || ||||||||| ||||||||||||||| ||||
Sbjct: 54882246 gtgggaagccaggtggcctgacctctcctgctacagagaccctgaagagattgaagagga 54882187
Query: 869 agagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgc 928
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54882186 agagcaggcagtggcggagaaggctgtgaccaaggaggaatttcagggtgaatggactgt 54882127
Query: 929 gccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgca 988
|||||||| | |||| |||| ||||||||| ||| |||| ||||| |||||
Sbjct: 54882126 gccagctcttcggttccctgctactcaacct---------gatgggtctgaaggcgtgca 54882076
Query: 989 ggtgccttctgtgcccatccagca 1012
|||||| |||||||||||||||||
Sbjct: 54882075 ggtgccctctgtgcccatccagca 54882052
Score = 129 bits (65), Expect = 4e-27
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 1057 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtctt 1116
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 54882034 ggtctgcagctcccactgctcaggccactgaatgggtaggaacaaccactgagtggtctg 54881975
Query: 1117 aagttcttccatgaactctta 1137
||||||||||| ||||||||
Sbjct: 54881974 aagttcttccacaaactctta 54881954
>gb|GL894387.2| Sus scrofa unplaced genomic scaffold ChrUScaf2271
Length = 78668
Score = 844 bits (426), Expect = 0.0
Identities = 626/686 (91%), Gaps = 5/686 (0%)
Strand = Plus / Plus
Query: 174 ggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatg 233
||||||||||| |||||||||||||||||| || | ||||||||||| ||||| ||||||
Sbjct: 7529 ggggtccatacagcgttgttcttgattcccatcatgacttaaagggaaactttgacaatg 7588
Query: 234 tccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagca 293
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7589 tctggagcccttgatgtcctgcaaatgaaagaggaggatgtcctcaaattccttgcagca 7648
Query: 294 ggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaagg 353
|||||||||| |||| ||||||||||||||||||||||| ||||| || || | ||||
Sbjct: 7649 agaacccacctaggtgtcaccaaccttgacttccaaatggcacagtctatgtaaagaagg 7708
Query: 354 aaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcg 413
||||| ||| ||||||| ||||| ||||||||||||||||||||| |||||||||||| |
Sbjct: 7709 aaaagggatagcatctatatcat-aatctgaagagaacctgggag-aacttctgttggtg 7766
Query: 414 gctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaat 473
||||||||||| ||||||| |||| | ||||| |||||||||||||||||||||||||||
Sbjct: 7767 gctcgtgccattgttgccactgaagatccagctgatgtcagtgtcatatcctccaggaat 7826
Query: 474 actggccagcgagctgtgctgaagtttgctgctgccact-ggagccactcctattgctgg 532
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7827 actggccatcgagctgtgctgaagtttgctgctgccactgggagccactcctattgctgg 7886
Query: 533 ccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagact 592
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 7887 ccgcttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaaga-t 7945
Query: 593 tctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaa 652
||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 7946 tctggtggtgactgatcccagggctgaccaccagcatctcacagaagtctcttatgttaa 8005
Query: 653 cctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccat 712
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| |||||
Sbjct: 8006 cctgcctaccattgctctgtgtaacaaagactctcctctgcattatgcggacatagccat 8065
Query: 713 cccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccggga 772
||| || |||||| ||| |||||||||||| |||||||| ||| ||||||| ||||||||
Sbjct: 8066 cccatgaaacaacgaggaagctcactcagt-ggtctgatctggcggatgcttgcccggga 8124
Query: 773 agttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacct 832
|||||||||||||| |||||||||||| || ||||||| ||||||||||||||| | |
Sbjct: 8125 agttctgcgcatgcctggcaccatctctcgtgaacaccagtgggaagtcatgcctcattt 8184
Query: 833 ctacttctacagagatcctgaagaga 858
|||||||||||||||||||||||||
Sbjct: 8185 ttacttctacagagatcctgaagaga 8210
Score = 200 bits (101), Expect = 1e-48
Identities = 165/187 (88%), Gaps = 7/187 (3%)
Strand = Plus / Plus
Query: 951 actcaacctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccag 1010
|||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 8316 actcaacctgagatggcagattggtccagaggcgtgcaggtgccttctgtgcccatccat 8375
Query: 1011 caattccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctccc 1070
|| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 8376 cagttacctactgaagactggagtgctcagcctaccac-------tggtctgcagctccc 8428
Query: 1071 actgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaagttcttccatga 1130
||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||||
Sbjct: 8429 actgctcaggccactgaatgcgtaggaacagctactgagtgatcttaagttcttccatag 8488
Query: 1131 actctta 1137
|||||||
Sbjct: 8489 actctta 8495
>Sscrofa_Chr14
|| Length = 153851969
Score = 829 bits (418), Expect = 0.0
Identities = 797/924 (86%), Gaps = 17/924 (1%)
Strand = Plus / Minus
Query: 176 ggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatgtc 235
||||||||| | |||||||| ||||||| ||||||||||| || ||||||||||||||
Sbjct: 101040270 ggtccatacagtgttgttctggattcccactgtaacttaaagagaaactttcacaatgtc 101040211
Query: 236 cggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcagg 295
|||| | || |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 101040210 cggatgttt-gaggtcctgcaaatgaagtaggaggatgtcctcaaattccttgcagcagg 101040152
Query: 296 aacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaa 355
||||||| | |||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 101040151 aacccacttaggtggcaccaacctagacttccaaatggaacaatacagctacaaaaggaa 101040092
Query: 356 aagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggc 415
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 101040091 aagtgatggcatctacatcataaatctgaagagaacctgggagaaccttctgttggcagt 101040032
Query: 416 tcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatac 475
||||||||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 101040031 tcgtgccattgttgtcattgaaaacccagctgatgtcagtgtcatatcttcaaggaatac 101039972
Query: 476 tggccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccg 535
| |||| | ||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 101039971 tagccaccaagctgtgctgaagtttgctactgccactagagccacttctattgctggcca 101039912
Query: 536 cttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttct 595
|||||||| |||| ||||||||||||||||| || ||| ||| ||||||||||||||||
Sbjct: 101039911 tttcactcccggaaacttcactaaccagatccgggtagcattctgggagccaagacttct 101039852
Query: 596 ggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacct 655
|||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 101039851 ggtgtttactgatctcagggctgattaccagcctctcacagaggcctcttatattaacct 101039792
Query: 656 gcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatccc 715
|| | | |||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct: 101039791 acccccaactgctctgtgtaatacagactctcctctgtattatgtggacattgccatcta 101039732
Query: 716 gtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccgggaagt 775
||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||
Sbjct: 101039731 atgcaacaacaagggaactcactcagtgggtctgatgtggtgggtgctggcccaggaaga 101039672
Query: 776 tctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctcta 835
||||| | ||| ||||||||||||| ||||| ||| ||| ||||||||||| |||||
Sbjct: 101039671 tctgcacttgcatggcaccatctcctatgaaca-ccacaggaggtcatgcctgatctcta 101039613
Query: 836 cttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgt 895
|| || |||| ||||| |||||| ||||||||||||||| || |||||||
Sbjct: 101039612 ctgctgcagatatcctaaagagactgaaaaggaagagcatgcagcagctg---------- 101039563
Query: 896 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactca 955
|||||||| |||||||| || ||||| | ||| ||| ||||||||| | |||||
Sbjct: 101039562 -----aggaggaacttcagggtaaacggactactccatctcatgagttcaccactactca 101039508
Query: 956 acctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaatt 1015
|||| | | ||||| |||||| |||| |||| ||||| ||||||||||||||||| ||
Sbjct: 101039507 acctaaagcagcagactggtccaaaggcatgcaagtgccctctgtgcccatccagcagtt 101039448
Query: 1016 ccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgc 1075
|||||||||||| ||||||||||||||| |||||||| | | ||||| ||||||||||||
Sbjct: 101039447 ccctactgaagactggagtgctcagcctgccactgaaaactagtctgtagctcccactgc 101039388
Query: 1076 gcaggccactgaatgggtaggaac 1099
|||||||||||||||||||||||
Sbjct: 101039387 tcaggccactgaatgggtaggaac 101039364
Score = 739 bits (373), Expect = 0.0
Identities = 654/746 (87%), Gaps = 15/746 (2%)
Strand = Plus / Plus
Query: 376 taaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattg 435
||||||| | |||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct: 77017853 taaatctaaggagaacctgggagaaacttcggt----ggctcgtgccattgttgccattg 77017908
Query: 436 aaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctga 495
||||||||| | ||||| ||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 77017909 aaaacccagttgttgtcaatgtcatatcctccaggaatactgactagcaagctgtgctga 77017968
Query: 496 agtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttca 555
|||||||||||||||||||||| |||| | ||||||| |||||||||||||||| |||
Sbjct: 77017969 agtttgctgctgccactggagctgttcctgtcgctggccacttcactcctggaaccatca 77018028
Query: 556 ctaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccaggg 615
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 77018029 ctaaccagatccaggcagccttctgggatccaagacttctggtggttactgatcccaggg 77018088
Query: 616 ctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgta 675
||||| || ||||||||||||| |||| |||||||||||| ||||| |||||||||
Sbjct: 77018089 gtgaccgccggcctctcacagagaga-cttacgttaacctgccttccattcctctgtgta 77018147
Query: 676 acacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctc 735
||||||||| || ||||||| ||| | |||||| ||||||||||| |||||||
Sbjct: 77018148 acacagact-------gcattatgtgaacactttcatcccctgcaacaacaaaggagctc 77018200
Query: 736 actcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcacca 795
|||||||||||||||||||||||||||| |||| ||||||| ||| ||| | ||||||||
Sbjct: 77018201 actcagtgggtctgatgtggtggatgctagcccaggaagttgtgcacattcatggcacca 77018260
Query: 796 tctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaag 855
||||| ||||| || ||| || |||||| | |||| ||| ||||||||| ||||
Sbjct: 77018261 cctcccataaacactcacaggaggttatgcctcatctct---tctccagagatccagaag 77018317
Query: 856 agattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagg 915
|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 77018318 agattgaaaagggagagcaggcagcagctgagaagactgtgaccaaggaggaatttcagg 77018377
Query: 916 gtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggt 975
||||| |||||| |||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 77018378 gtgaactgactgctccagctcctgtgttcactggtactcaacctgaggtggcagactggt 77018437
Query: 976 ccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtg 1035
| ||||| ||||| |||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 77018438 ctgaaggcatgcagttgccctctgtgcccatccagcagttccctactgaagactggagtg 77018497
Query: 1036 ctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggtag 1095
||||||| |||||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct: 77018498 ctcagcccgccactgaagactggtctgcagctcccattgctcaggccactgaatgggtag 77018557
Query: 1096 gaacaaccactgagtggtcttaagtt 1121
||||||||||||||||||||||||||
Sbjct: 77018558 gaacaaccactgagtggtcttaagtt 77018583
Score = 335 bits (169), Expect = 3e-89
Identities = 220/237 (92%)
Strand = Plus / Plus
Query: 153 cctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaact 212
||||||| ||||||||||| |||||||||| ||| ||||| ||||||||| | ||||||
Sbjct: 77017365 cctttccacgctgcccagaaaggggtccatatggcattgtttttgattcccattgtaact 77017424
Query: 213 taaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 272
|||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||| ||
Sbjct: 77017425 taaagggaaactttcacaatgtctggagcccttgatgtcctgcaaaggaaagaggagaat 77017484
Query: 273 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 332
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 77017485 gtcctcaaattccttgcagcaggaacccacctaggtggtaccaaccttgacttccaaatg 77017544
Query: 333 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 389
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77017545 gaatagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 77017601
>Sscrofa_Chr09
|| Length = 153670197
Score = 829 bits (418), Expect = 0.0
Identities = 802/930 (86%)
Strand = Plus / Minus
Query: 192 ttcttgattcccgtcgtaacttaaagggagactttcacaatgtccggagccctcgatgtc 251
|||| ||||||| || | ||||||||||| | ||||||||| || |||| | | ||||||
Sbjct: 39274007 ttctggattcccatctttacttaaagggaaattttcacaatctctggaggcattgatgtc 39273948
Query: 252 ctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggc 311
|| |||||||| |||||||||||||||||| | ||||||||||||||||| | |||| |
Sbjct: 39273947 ctacaaatgaaggaggaggatgtcctcaagaactttgcagcaggaacccacttaggtgac 39273888
Query: 312 accaaccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctac 371
|||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 39273887 accaacctggatttccaaatggaacagtacatctacagaaggaaaagtggtggcatctgc 39273828
Query: 372 atcataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgcc 431
||||||||||||||||||| |||||||| ||||| ||||| ||| ||||||| | |||
Sbjct: 39273827 atcataaatctgaagagaatctgggagaggcttcttttggcagcttgtgccattgctgct 39273768
Query: 432 attgaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtg 491
|||||||||||||| ||||||| ||||| ||||| |||||||| ||| ||||||||
Sbjct: 39273767 attgaaaacccagctgatgtcattgtcacatcctttgggaatacttgcccatgagctgtg 39273708
Query: 492 ctgaagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaacc 551
||| || || |||||||||| |||||||||||||||| | | ||||||||| ||||| |
Sbjct: 39273707 ctggagctttctgctgccacaggagccactcctattgattgttgcttcactcttggaaac 39273648
Query: 552 ttcactaaccagatccaggcagccttccgggagccaagacttctggtggttactgatccc 611
|||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 39273647 ttcactaaccagatccaggcagttttctgggagccaagacttctggtggttattgatccc 39273588
Query: 612 agggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctg 671
||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||
Sbjct: 39273587 agggctgactaccagcctctcccagaggcctcttatgttcacctacctaacattgctcta 39273528
Query: 672 tgtaacacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaaggga 731
|||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 39273527 cgtaacacagactgttctctgcattatgtggacatcaccatcctgtgcaacaacaaggga 39273468
Query: 732 gctcactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggc 791
||||||| |||||||||||||||| | ||||| || ||||||||||| ||||| |||||
Sbjct: 39273467 gctcacttagtgggtctgatgtggcagctgctcacctgggaagttctgtgcatgtgtggc 39273408
Query: 792 accatctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcct 851
||||||||| | |||||| ||||||| |||||||||||||| ||||||| |||| |||||
Sbjct: 39273407 accatctccagtgaacactcatgggaggtcatgcctgacctttacttctgcagaaatcct 39273348
Query: 852 gaagagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaattt 911
|| ||||||||||| |||||||| || ||||||| |||||||| |||||||||||||||
Sbjct: 39273347 gaggagattgaaaaagaagagcaagcagcagctgggaaggctgcaaccaaggaggaattt 39273288
Query: 912 cagggtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagat 971
|||||||||||||||| |||||||||||||||||||| || |||| ||| || |||||
Sbjct: 39273287 cagggtgaatggactggtccagctcctgagttcactgctacgcaacatgatgttgcagac 39273228
Query: 972 tggtccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattgg 1031
|| ||| |||| ||||||||| ||| ||||||||||||| |||| ||| |||| | |
Sbjct: 39273227 tgttccaaaggcacgcaggtgccctctttgcccatccagcagttccttaccgaagcctag 39273168
Query: 1032 agtgctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgg 1091
|||||||||||| |||||||| ||||| ||| | |||| |||||||| ||||||
Sbjct: 39273167 agtgctcagcctgccactgaaatctggtccatagcggtccctgctcaggccaccgaatgg 39273108
Query: 1092 gtaggaacaaccactgagtggtcttaagtt 1121
|||||||||||||||||||| |||||||||
Sbjct: 39273107 gtaggaacaaccactgagtgctcttaagtt 39273078
Score = 581 bits (293), Expect = e-163
Identities = 543/625 (86%), Gaps = 1/625 (0%)
Strand = Plus / Plus
Query: 495 aagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttc 554
|||||| ||||| |||| |||||||| ||| |||||||| ||||||||||||||||||||
Sbjct: 32883095 aagttttctgctaccaccggagccacccctgttgctggctgcttcactcctggaaccttc 32883154
Query: 555 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccagg 614
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 32883155 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgttcccagg 32883214
Query: 615 gctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgt 674
| |||||||||||||||| |||| ||||||||||| |||||||| ||| || |||||
Sbjct: 32883215 gatgaccaccagcctctcctagagacctcttatgttcacctgcctcccacggccatgtgt 32883274
Query: 675 aacacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagct 734
||||||||||| |||||| || |||||||||| |||||| |||||||| ||||||||||
Sbjct: 32883275 aacacagactctcctctgtgtcatgtggacatcaccatcctgtgcaacagcaagggagct 32883334
Query: 735 cactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcacc 794
|||| | ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||
Sbjct: 32883335 cactttgagggtctgatgtggcagatgctcgcctgggaagttctgtgcatgtgtggcacc 32883394
Query: 795 atctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaa 854
| |||| | |||||| ||||||| |||||||||||| ||| ||||| |||||||||||||
Sbjct: 32883395 acctccagtgaacactcatgggaggtcatgcctgacttctccttctgcagagatcctgaa 32883454
Query: 855 gagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcag 914
||||||| ||| |||||| |||| ||||||| ||| ||||||||||||||| ||||||||
Sbjct: 32883455 gagattgcaaacgaagagaaggcagcagctgggaaagctgtgaccaaggagtaatttcag 32883514
Query: 915 ggtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattgg 974
||| ||||||| || || |||||||| |||||||| | ||||||| |||| ||| ||
Sbjct: 32883515 ggtaaatggacggctcccgctcctgaattcactgctctttaacctgaagtgggagactga 32883574
Query: 975 tccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagt 1034
|| ||||| |||||||||| ||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 32883575 tctgaaggcatgcaggtgccctctgtgcccatccagcaggtccct-ctgaagactggagt 32883633
Query: 1035 gctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggta 1094
||||||||| |||||||||| | | ||| ||||||| |||| || ||||||| |||| |
Sbjct: 32883634 gctcagcctgccactgaagacttgcctgaagctccccctgcccaaaccactgactgggga 32883693
Query: 1095 ggaacaaccactgagtggtcttaag 1119
| ||||||||||||| ||||||||
Sbjct: 32883694 gaaacaaccactgagcagtcttaag 32883718
Score = 133 bits (67), Expect = 2e-28
Identities = 137/160 (85%), Gaps = 4/160 (2%)
Strand = Plus / Plus
Query: 257 aatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaa 316
|||||| ||||||||||||||||| | |||| ||||||||||| || | |||||| |||
Sbjct: 32882874 aatgaaggaggaggatgtcctcaaatcccttccagcaggaacctacttaagtggcagcaa 32882933
Query: 317 ccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatg----gcatctaca 372
| ||| ||||||| |||||||||| |||||||||||||||||||||| | |||||||
Sbjct: 32882934 ctttggcttccaagtggaacagtatatctacaaaaggaaaagtgatggtatgtatctaca 32882993
Query: 373 tcataaatctgaagagaacctgggagaaacttctgttggc 412
||| ||||||| || |||||||| |||| |||||||||||
Sbjct: 32882994 tcaaaaatctggagtgaacctggcagaagcttctgttggc 32883033
Score = 109 bits (55), Expect = 4e-21
Identities = 319/402 (79%), Gaps = 15/402 (3%)
Strand = Plus / Plus
Query: 316 accttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatct-acatc 374
||||||||||||||||| || ||| ||||||||||||||| || |||||||||| |||||
Sbjct: 75449755 accttgacttccaaatgaaagagtccatctacaaaaggaacagagatggcatctcacatc 75449814
Query: 375 ataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccatt 434
|| ||||||||| |||||||||||||||| | |||| | ||| ||||||||
Sbjct: 75449815 atcaatctgaaggaaacctgggagaaactttt-------gctcataccactgttgccatg 75449867
Query: 435 gaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctg 494
|| |||| | ||||||| |||||| ||||||||||||| ||| |||||| ||||
Sbjct: 75449868 gacaacctggatgatgtca-caccatatcttccaggaatactgaccaaagagctgggctg 75449926
Query: 495 aagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttc 554
| |||||||||||| || ||| |||| ||||| || | |||| |||||||| ||||
Sbjct: 75449927 atgtttgctgctgc--ctcaagctactcggcttgcttgctgtttcattcctggaaacttc 75449984
Query: 555 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccagg 614
| | |||||||||||||||| |||||| ||||| ||||||| |||| ||||||
Sbjct: 75449985 aatcgttagatccaggcagccttttgggagctgctacttcaggtggttgctgaccccagg 75450044
Query: 615 gctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgc-tctgtg 673
|||||||||||||| | ||| ||| ||||| |||||||||||||| ||| ||| ||
Sbjct: 75450045 actgaccaccagcctgtaacattggcatcttaggttaacctgcctac---tgcttctctg 75450101
Query: 674 taacacagactcacctctgcgttatgtggacattgccatccc 715
|||||||| || ||||| | | ||||||||||||||||||
Sbjct: 75450102 aaacacagattcttctctgtgctgtgtggacattgccatccc 75450143
>Sscrofa_Chr02
|| Length = 162569375
Score = 615 bits (310), Expect = e-173
Identities = 768/914 (84%), Gaps = 5/914 (0%)
Strand = Plus / Plus
Query: 208 taacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagagg 267
|||||| |||||| ||||||||| | | | ||| || |||||||| |||||||| ||||
Sbjct: 88651635 taactttaagggaaactttcacagtattcagagtccctgatgtcctacaaatgaaggagg 88651694
Query: 268 aggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttcc 327
||||||| || || ||||||||||||||||||||| | | ||| |||| |||||||||
Sbjct: 88651695 aggatgttcttaaattccttgcagcaggaacccacttagacagcatcaacgttgacttcc 88651754
Query: 328 aaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaaga 387
|||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct: 88651755 aaatggaatagtacatctacaaaaggaaacgtggcggcatctacctcataaatctgaaga 88651814
Query: 388 gaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccg 447
||||||||||||| |||| ||| |||| |||||| | ||| | ||||||| ||||
Sbjct: 88651815 gaacctgggagaagcttccca-ggcagctcatgccattggtgctactgaaaacacagctc 88651873
Query: 448 atgtcagtgtcatatcctccaggaatactggccagcgagctgtgctga-agtttgctgct 506
||| |||| | | ||||||||| |||||||||| || | |||||| |||||||||||
Sbjct: 88651874 atgccagttttacatcctccagaaatactggcctatgaaccgtgctgccagtttgctgct 88651933
Query: 507 gccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatc 566
||| | |||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 88651934 cccaataaagccactcctatcactggctgtttcactcctggaaccttcactaaccagatc 88651993
Query: 567 caggcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccag 626
||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||
Sbjct: 88651994 caggcagccttccgggagccaagacttgtggtggtcactgatctcagggctgcccaccaa 88652053
Query: 627 cctctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactca 686
|||||||||||| ||||||| ||| |||||||| ||| ||||| ||||||||||| |
Sbjct: 88652054 cctctcacagagacctcttaagttgacctgcctgccactgctccacgtaacacagaccct 88652113
Query: 687 cctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggt 746
|| |||||| |||| ||| ||||||||| | |||| ||||||||||||||||| |||
Sbjct: 88652114 tctgtgcgttgtgtgaacactgccatcccaggtaacagtaagggagctcactcagtaggt 88652173
Query: 747 ctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccg-gga 805
||| ||||||||| |||| ||| | |||||| |||||||| ||||| ||| | | | | |
Sbjct: 88652174 ctggtgtggtggaggctcacccagaaagttcagcgcatgcatggcatcattttctgtgaa 88652233
Query: 806 acacccatgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaa 865
||||||| |||| ||||||||||| ||| |||| |||||||||||||||||| ||||||
Sbjct: 88652234 acacccaagggaggtcatgcctgatctccacttagacagagatcctgaagagactgaaaa 88652293
Query: 866 ggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggac 925
|||||||||||| | |||||||||||||||||||||||||| |||| |||||||| |||
Sbjct: 88652294 ggaagagcaggcagaagctgagaaggctgtgaccaaggaggtattttagggtgaacagac 88652353
Query: 926 tgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgt 985
| |||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||
Sbjct: 88652354 -actccagctcctgagttgactgctcctcaacctgaggtggcagactggtctgaaggtgt 88652412
Query: 986 gcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctac 1045
||||| || | ||||||||| | ||| |||||||| |||| | || |||||||||| |
Sbjct: 88652413 tcaggtaccctatgtgcccattcggcagttccctaccgaaggtgtgattgctcagcctgc 88652472
Query: 1046 cactgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccac 1105
||||||||| | ||||||| ||| |||| |||||| ||||| | | |||||||||||
Sbjct: 88652473 cactgaagaaaagcctgcagcaccccctgctcaggccgctgaaagag-aggaacaaccaa 88652531
Query: 1106 tgagtggtcttaag 1119
||| ||||||||||
Sbjct: 88652532 tgaatggtcttaag 88652545
Score = 607 bits (306), Expect = e-171
Identities = 519/587 (88%), Gaps = 6/587 (1%)
Strand = Plus / Plus
Query: 290 agcaggaacccaccttggtggcaccaaccttgacttccaaatgga--acagtacatctac 347
||||||||||||| | ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 47865884 agcaggaacccacttaggtggaaccaacctggacttccaaatggagaacagtacatctac 47865943
Query: 348 aaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctg 407
|||||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 47865944 aaaaggaaaagtgagggcatctacatcataaatctgaagagaacccggaagaagcttctg 47866003
Query: 408 ttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctcc 467
||||| |||| |||||| | ||||||| ||||| |||| ||||||| || ||||||||||
Sbjct: 47866004 ttggcagctcctgccattgctgccattaaaaactcagctgatgtcaatgacatatcctcc 47866063
Query: 468 aggaatactggccagcgagctgtgctgaagtttgctgctgccactggagccactcctatt 527
||||| |||||||| |||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 47866064 tggaatgctggccagtgagctgtgctaaagtttgctcctgccactggagccacttctatt 47866123
Query: 528 gctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagcca 587
|||||| | |||||||||| || ||| ||||||||||||| |||| |||| |||||||
Sbjct: 47866124 gctggctgtttcactcctgcaaggttccctaaccagatccaagcaggcttctaggagcca 47866183
Query: 588 agacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttat 647
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47866184 agacttctggtggttaatgatcccagggctgaccaccagcctctcacagaggcctcttag 47866243
Query: 648 gttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacatt 707
||| || ||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct: 47866244 gttcactcacctaccactgctctgtgtaacacagagtttcctctgcgttatgtggacatc 47866303
Query: 708 gccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcc 767
||||||| ||| ||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 47866304 gccatcctgtg---caacaagggagctcactcagtgggtctgatgctgt-gatgcttgcc 47866359
Query: 768 cgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcct 827
||||| ||||||| ||||| || |||||||||| |||||||||||||| ||||| ||
Sbjct: 47866360 cgggaggttctgcccatgcatgacaccatctcctatgaacacccatgggaggtcatttct 47866419
Query: 828 gacctctacttctacagagatcctgaagagattgaaaaggaagagca 874
||||||||||||||||||| || ||||| |||| |||||||||||||
Sbjct: 47866420 gacctctacttctacagagttcgtgaagtgattaaaaaggaagagca 47866466
Score = 176 bits (89), Expect = 2e-41
Identities = 215/256 (83%), Gaps = 7/256 (2%)
Strand = Plus / Plus
Query: 862 aaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaat 921
||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 47866649 aaaaggaagagcaggtggcagccaggaaggctgtgaccaaggaggaatttcaggatgaat 47866708
Query: 922 ggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaag 981
||| ||| ||||||||||||||| |||||||||||||| |||| |||||| |||
Sbjct: 47866709 ggattgc------tcctgagttcactgctactcaacctgaggtcgcaggctggtccaaag 47866762
Query: 982 gtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctcagc 1041
| |||||| ||| || ||| ||| ||||| |||| |||||| | || |||||||||
Sbjct: 47866763 gcatgcaggcgccctccgtgtccactcagcagttcctcactgaaaactg-agtgctcagt 47866821
Query: 1042 ctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaa 1101
| || ||||| | |||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 47866822 ccactgctgaaaactggtctgcagctcccactgctcaggccacagaatgggcaggaacaa 47866881
Query: 1102 ccactgagtggtctta 1117
||||||||||||||||
Sbjct: 47866882 ccactgagtggtctta 47866897
Score = 161 bits (81), Expect = 1e-36
Identities = 147/169 (86%)
Strand = Plus / Plus
Query: 232 tgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcag 291
||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| |
Sbjct: 143664528 tgtccagagcccttgatgtcctgcaaaggaaaggggaggatgtcctcaaattccttgtgg 143664587
Query: 292 caggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaa 351
|||||| ||| | || |||||| |||||||||||||||||||||||| || ||| ||
Sbjct: 143664588 aaggaactcacttcagtagcaccagccttgacttccaaatggaacagtatattcacacaa 143664647
Query: 352 ggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaa 400
||| || |||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 143664648 ggagaaatgatggtatctgcatcataaatctgaagagaacctgggagaa 143664696
Score = 137 bits (69), Expect = 2e-29
Identities = 313/391 (80%), Gaps = 10/391 (2%)
Strand = Plus / Plus
Query: 205 tcgtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaag 264
|||||| ||||||| | | ||||||||||||| | |||| |||||||||||||||||||
Sbjct: 37349735 tcgtaagttaaaggaaaattttcacaatgtccaaatcccttgatgtcctgcaaatgaaag 37349794
Query: 265 aggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgact 324
|| |||||||| |||| || ||||||||| |||||| | | | ||| || |||||||
Sbjct: 37349795 agaaggatgtcttcaactttcttgcagcaagaaccc---tagatagcatcagtcttgact 37349851
Query: 325 tccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctga 384
||||| ||||||||||||||||| |||||||||||||| | | | | | | |
Sbjct: 37349852 accaaa-----cagtacatctacaaaagaaaaagtgatggcattaaacttacacacccaa 37349906
Query: 385 agagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccag 444
|||| || |||||||| | |||| || | |||| |||||| |||||| ||||||| |
Sbjct: 37349907 agaggac-tgggagaagcctctgctgacagctcttgccattgttgcctctgaaaacag-g 37349964
Query: 445 ccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctg 504
| | | |||| ||||||||| || |||||| ||| | ||||||||| ||||||||
Sbjct: 37349965 acaacattggtgttgtatcctccaagattactggtcagtgcactgtgctgaggtttgctg 37350024
Query: 505 ctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccaga 564
|||||||||||||||||||||| |||||| ||||||||||||||||| || |||| ||
Sbjct: 37350025 ctgccactggagccactcctatcgctggctgcttcactcctggaaccctccctaatgagt 37350084
Query: 565 tccaggcagccttccgggagccaagacttct 595
|||| ||| ||||| ||||||||||||||||
Sbjct: 37350085 tccaagcaaccttctgggagccaagacttct 37350115
Score = 97.6 bits (49), Expect = 1e-17
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 207 gtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagag 266
|||||||||||||| |||||||||||||| ||| |||| |||||||| | || || |||
Sbjct: 47865532 gtaacttaaagggaaactttcacaatgtctggaacccttgatgtcctttatataaaggag 47865591
Query: 267 gaggatgtcctcaagttccttgcagcaggaacc 299
|||||||||||||| ||||||| ||||||||||
Sbjct: 47865592 gaggatgtcctcaaattccttgtagcaggaacc 47865624
Score = 79.8 bits (40), Expect = 3e-12
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1035 gctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggta 1094
|||||||| ||||||| || ||| |||||||||||||||| |||||||||||| ||||
Sbjct: 37350518 gctcagcccaccactggggactgggctgcagctcccactgctcaggccactgaacaggta 37350577
Query: 1095 gg-aacaaccactgagtggtcttaagtt 1121
|| || |||||||||||||||||||||
Sbjct: 37350578 ggaaatgaccactgagtggtcttaagtt 37350605
Score = 73.8 bits (37), Expect = 2e-10
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 338 gtacatctacaaaaggaaa--agtgatggcatctacatcataaatctgaagagaacctgg 395
|||||||| | |||||||| ||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 40361799 gtacatctgccaaaggaaataagtgatggcatctccatcataaacctgaagaggacctgg 40361740
Query: 396 gagaaacttctg 407
|||||||||||
Sbjct: 40361739 cagaaacttctg 40361728
Score = 67.9 bits (34), Expect = 1e-08
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 605 tgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccat 664
|||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| || | |
Sbjct: 134479377 tgatcccagggccgaccaccagtctctcacag-ggcatcttatgttaacctgtctgcagt 134479319
Query: 665 tgctctgtgtaacacagactcacctc 690
|||||| | ||||||||||| ||||
Sbjct: 134479318 ggctctgggcaacacagactctcctc 134479293
Score = 67.9 bits (34), Expect = 1e-08
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 605 tgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccat 664
|||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| || | |
Sbjct: 134502836 tgatcccagggccgaccaccagtctctcacag-ggcatcttatgttaacctgtctgcagt 134502778
Query: 665 tgctctgtgtaacacagactcacctc 690
|||||| | ||||||||||| ||||
Sbjct: 134502777 ggctctgggcaacacagactctcctc 134502752
Score = 63.9 bits (32), Expect = 2e-07
Identities = 131/163 (80%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 544 ctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctggtggtta 603
|||||||||| ||||| ||||| |||| || ||||| ||| | | | ||||||||| |||
Sbjct: 40361569 ctggaacctttactaatcagattcaggaaggcttccaggaactacgtcttctggtgttta 40361510
Query: 604 ctgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctacca 663
||||||||| || ||||| ||||||| | ||| |||||||| |||||| || ||
Sbjct: 40361509 ttgatcccagagcctaccactagcctcttccggagctgtcttatgtgaacctgtctgcct 40361450
Query: 664 ttgctctgtgtaacacagactcacctctgcgttatgtggacat 706
|||||||||||| |||||||| ||||||| ||||| |||||
Sbjct: 40361449 ttgctctgtgta--acagactctcctctgcactatgttgacat 40361409
Score = 60.0 bits (30), Expect = 3e-06
Identities = 95/114 (83%), Gaps = 2/114 (1%)
Strand = Plus / Minus
Query: 837 ttctacagagatcctgaa-gagattgaaaaggaagagcaggccgcagctgagaaggctgt 895
||||||||| |||||||| ||||||| |||||||| |||||| | |||| |||| |||
Sbjct: 40361298 ttctacaga-atcctgaaagagattgtaaaggaagtgcaggctgatgctggaaaggatgt 40361240
Query: 896 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgc 949
|||| ||||||||||||| ||||| || || |||||||||||||| |||||
Sbjct: 40361239 gacccaggaggaatttcaaggtgagcataccgctccagctcctgagtttactgc 40361186
>Sscrofa_Chr04
|| Length = 143465943
Score = 599 bits (302), Expect = e-168
Identities = 755/899 (83%), Gaps = 14/899 (1%)
Strand = Plus / Plus
Query: 224 tttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagtt 283
|||||||||||| |||||||| | ||| ||| |||||||| ||||||||||| |||| ||
Sbjct: 35717278 tttcacaatgtctggagcccttgctgttctgaaaatgaaaaaggaggatgtcttcaaatt 35717337
Query: 284 ccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacat 343
|| |||||||||||||||| | | |||| |||| ||||||| ||||||||||||||||||
Sbjct: 35717338 ccctgcagcaggaacccacttagttggccccaatcttgactgccaaatggaacagtacat 35717397
Query: 344 ctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaact 403
||||| | || ||||||||||||||| ||| |||||||||||||| | ||| |||| ||
Sbjct: 35717398 ctacagatgggaaagtgatggcatctgcattgtaaatctgaagagaccatggaagaagct 35717457
Query: 404 tctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatc 463
||||||||| | ||||||||| | || ||||||||||||| | |||||||||| |||| |
Sbjct: 35717458 tctgttggcagttcgtgccattgctgtcattgaaaacccacctgatgtcagtgccatacc 35717517
Query: 464 ctccaggaatactggccagcga--gctgtgctgaagtttgctgctgccactggagccact 521
|| ||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 35717518 cttcaggaatactgaccagcgaatactgtgctgaa-tttgctgctgctactggagccact 35717576
Query: 522 cctattgctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgg 581
||||| |||| | ||||||||||||||||||| | ||||||||||||||||| |
Sbjct: 35717577 cctatggctgtctgcttcactcctggaacctttgccgaccagatccaggcagccct---- 35717632
Query: 582 gagccaagacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcc 641
|||| ||||| ||||||||||| |||||| |||||||| ||| ||||||||||||
Sbjct: 35717633 ---ccaaaacttcgggtggttactggtcccagatctgaccacaagcttctcacagaggct 35717689
Query: 642 tcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtg 701
|| ||||||||| ||||| |||||||||||||||||||| | |||||| ||||||||
Sbjct: 35717690 gctcatgttaaccctcctactgttgctctgtgtaacacagaccctcctctgtgttatgtg 35717749
Query: 702 gacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatg 761
||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 35717750 gacattgccatcctacgcaacaa-tagggggctcactcagtgggtctgatgtggtagatg 35717808
Query: 762 ctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtc 821
|| | ||||| || || ||||| ||||||||||||| | |||||| || ||| | |
Sbjct: 35717809 cttggccgggtggtcctatacatgcctggcaccatctcctgtgaacactcacaggaggcc 35717868
Query: 822 atgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagcaggccgca 881
|||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 35717869 atgcctgatctctacttctacagagatcctgaagagattgaaaaggaggaacagg-agca 35717927
Query: 882 gctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgag 941
|||||| ||| ||||||||||||||||||||||||||||| | || ||||||| ||||
Sbjct: 35717928 gctgagcaggtggtgaccaaggaggaatttcagggtgaatgcatggctccagctcttgag 35717987
Query: 942 ttcactgccactcaacctgaggtggcagattggtcc-gaaggtgtgcaggtgccttctgt 1000
||||||| ||||||| |||| ||||| | ||| || ||||| |||||||| | |||||
Sbjct: 35717988 ttcactgttactcaacatgagatggcaaactgggcctgaaggcatgcaggtgtcctctgt 35718047
Query: 1001 gcccatccagcaattccctactgaagattggagtgctcagcctaccactgaagattggtc 1060
|||| ||||| || ||||| |||| || ||||| |||| ||| ||||| |||| ||
Sbjct: 35718048 gcccctccagaaactccctcctgaggactggagaactcaacctgccactaaaga-ccatc 35718106
Query: 1061 tgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaag 1119
||||||||| ||||| ||| || ||||||||| | |||||| ||||||||||||||||
Sbjct: 35718107 tgcagctcctactgctcagacctctgaatggggaagaacaagaactgagtggtcttaag 35718165
Score = 204 bits (103), Expect = 8e-50
Identities = 423/524 (80%), Gaps = 18/524 (3%)
Strand = Plus / Minus
Query: 210 acttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggag 269
||||||||||||| ||| ||||| ||| ||||||| ||||| |||||||||| | ||
Sbjct: 115143147 acttaaagggagatttt-acaatatccagagcccttgatgttatgcaaatgaa---gaag 115143092
Query: 270 gatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaa 329
|||||||||| |||||| |||||||||||| | | |||||||| | |||||||||||
Sbjct: 115143091 gatgtcctcagattccttaaggcaggaacccacttagatggcaccagctttgacttccaa 115143032
Query: 330 atggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 389
|| |||| |||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 115143031 atagaaccc-----ctacaaaaggtaaagtgatagcatctacatcataaatctggagaga 115142977
Query: 390 acctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgat 449
|| ||| ||| |||||| |||| ||||||||| ||||||||| | |||||| |||
Sbjct: 115142976 acttggcggaagcttctgctggccattcgtgccattgttgccattcatttcccagctgat 115142917
Query: 450 gtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcc 509
||| |||||||| ||||||| | ||| |||||||||| | ||||||||||||
Sbjct: 115142916 gtct------tatcctccgtgaatactctc-agccagctgtgctgcactttgctgctgcc 115142864
Query: 510 actggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccag 569
||||||||||||||| || ||| | ||||||||| |||| | |||||| |||| | ||
Sbjct: 115142863 actggagccactcctgctg-tgggcacttcactcccggaagcctcactacccagttgtag 115142805
Query: 570 gcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcct 629
||||||| | ||||| |||||||| ||||||| |||||| ||||||||| |||||||||
Sbjct: 115142804 gcagcct-cagggagtcaagactttcggtggttcctgatctcagggctgagcaccagcct 115142746
Query: 630 ctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacct 689
| |||||| || ||||||||||| |||||||||| ||| |||||||||||| ||
Sbjct: 115142745 cccacagaagcatcttatgttaatctgcctaccagccctccccataacacagactctccg 115142686
Query: 690 ctgcgttatgtggacattgccatcccgtgcaacaacaagggagc 733
||| |||||||||| ||||||| || ||| ||||||||||||
Sbjct: 115142685 ctgtgttatgtggatattgccacccaatgctgcaacaagggagc 115142642
Score = 137 bits (69), Expect = 2e-29
Identities = 231/284 (81%), Gaps = 2/284 (0%)
Strand = Plus / Minus
Query: 836 cttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgt 895
||||||||| ||||| ||||||||||| ||||| | ||| || || ||||||| ||||||
Sbjct: 115142578 cttctacagggatcccgaagagattgacaaggatgggcaagcggccgctgagacggctgt 115142519
Query: 896 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactca 955
||| |||||| |||||||| || |||||| | |||||||| |||||||||||||||||
Sbjct: 115142518 gactaaggagagatttcaggctgtatggaccactccagctcccgagttcactgccactca 115142459
Query: 956 acctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaatt 1015
|||||| || |||| || |||||||| |||| || ||| ||||||| ||||||| ||
Sbjct: 115142458 acctgaagtcacagactgatccgaaggcgtgcgggcgccctctgtgcgtgtccagcagtt 115142399
Query: 1016 ccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgc 1075
||| ||||| | | ||| |||||||| ||| |||| || |||||||||| ||||| ||
Sbjct: 115142398 ccccactgacggtcagagggctcagcccacccctgaggactggtctgcag--cccaccgc 115142341
Query: 1076 gcaggccactgaatgggtaggaacaaccactgagtggtcttaag 1119
||| || | | ||||| |||||||||| |||||||||||||
Sbjct: 115142340 tcagacccccacaagggtaagaacaaccaccgagtggtcttaag 115142297
Score = 77.8 bits (39), Expect = 1e-11
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 1057 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaacc 1103
||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 136355360 ggtctgcagctcccactgctcaggccactgagtgggtaggaacaacc 136355314
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,795,148
Number of extensions: 506
Number of successful extensions: 506
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 150
Length of query: 1214
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1193
Effective length of database: 2,808,413,156
Effective search space: 3350436895108
Effective search space used: 3350436895108
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)