Animal-Genome cDNA 20110601C-000147


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000147
         (776 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777076.1| protein S100-A12 [Bos taurus].                       149   3e-36
Alignment   gi|NP_001039793.1| protein S100-A9 [Bos taurus].                     109   3e-24
Alignment   gi|NP_001107197.1| protein S100-A8 [Bos taurus].                      74   1e-13
Alignment   gi|NP_001179595.1| protein S100-Z [Bos taurus].                       71   1e-12
Alignment   gi|XP_002690462.1| PREDICTED: S100 calcium binding protein, zet...    71   1e-12
Alignment   gi|NP_001029727.1| protein S100-B [Bos taurus].                       69   3e-12
Alignment   gi|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus].      67   2e-11
Alignment   gi|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 i...    67   2e-11
Alignment   gi|XP_002686115.1| PREDICTED: cornulin-like [Bos taurus].             64   1e-10
Alignment   gi|XP_001255648.1| PREDICTED: cornulin [Bos taurus].                  64   1e-10

>ref|NP_777076.1| protein S100-A12 [Bos taurus].
          Length = 92

 Score =  149 bits (376), Expect = 3e-36
 Identities = 75/92 (81%), Positives = 84/92 (91%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           MTKLEDHLEGIINIFHQYSVR+GH+DTL KRELKQLITKELP TL+NTKDQ TIDKIFQ+
Sbjct: 1   MTKLEDHLEGIINIFHQYSVRVGHFDTLNKRELKQLITKELPKTLQNTKDQPTIDKIFQD 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LDA++D  VSF+EFVVLV+ VL TAH +IHKE
Sbjct: 61  LDADKDGAVSFEEFVVLVSRVLKTAHIDIHKE 92


>ref|NP_001039793.1| protein S100-A9 [Bos taurus].
          Length = 147

 Score =  109 bits (272), Expect = 3e-24
 Identities = 50/92 (54%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
 Frame = +1

Query: 70  KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKDQGTIDKIF 246
           KM+++E  +E IINIFHQYSVRLGHYDTLI++E KQL+ KELPN L K  K++  I++I 
Sbjct: 4   KMSQMESSIETIINIFHQYSVRLGHYDTLIQKEFKQLVQKELPNFLKKQKKNEAAINEIM 63

Query: 247 QNLDANQDEQVSFKEFVVLVTDVLITAHDNIH 342
           ++LD N D+Q+SF+EF++LV  + + +H+ +H
Sbjct: 64  EDLDTNVDKQLSFEEFIMLVARLTVASHEEMH 95


>ref|NP_001107197.1| protein S100-A8 [Bos taurus].
          Length = 89

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 38/92 (41%), Positives = 60/92 (65%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           +T LE  +  +I+++H+YS++ G+Y  + + +LKQL+  E P  +K  KD    D  F+ 
Sbjct: 2   LTDLECAINSLIDVYHKYSLKKGNYHAVYRDDLKQLLETECPKFMKK-KDA---DTWFKE 57

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD NQD  ++F+EF+VLV  V + AH+ IHKE
Sbjct: 58  LDINQDGGINFEEFLVLVIKVGLEAHEEIHKE 89


>ref|NP_001179595.1| protein S100-Z [Bos taurus].
          Length = 99

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 38/86 (44%), Positives = 52/86 (60%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T+LE  +  +I  FH+YS R G    L K ELK L+ +EL   L   KD   +DKI Q+L
Sbjct: 3   TQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQDL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           DAN+D +V F EFVV+V  + +  +D
Sbjct: 63  DANKDNEVDFNEFVVMVAALTVACND 88


>ref|XP_002690462.1| PREDICTED: S100 calcium binding protein, zeta-like [Bos taurus].
          Length = 99

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 38/86 (44%), Positives = 52/86 (60%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T+LE  +  +I  FH+YS R G    L K ELK L+ +EL   L   KD   +DKI Q+L
Sbjct: 3   TQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQDL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           DAN+D +V F EFVV+V  + +  +D
Sbjct: 63  DANKDNEVDFNEFVVMVAALTVACND 88


>ref|NP_001029727.1| protein S100-B [Bos taurus].
          Length = 92

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 34/92 (36%), Positives = 54/92 (58%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M++LE  +  +I++FHQYS R G    L K ELK+LI  EL + L+  K+Q  +DK+ + 
Sbjct: 1   MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD++ D +  F+EF+  V  +    H+    E
Sbjct: 61  LDSDGDGECDFQEFMAFVAMITTACHEFFEHE 92


>ref|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus].
          Length = 94

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 33/86 (38%), Positives = 53/86 (61%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           ++LE  +E +IN+FH +S + G    L K+ELK+L+  EL   L   KD   +DK+ + L
Sbjct: 3   SELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           D N D +V F+E+VVLV  + +  ++
Sbjct: 63  DENGDGEVDFQEYVVLVAALTVACNN 88


>ref|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 isoform 2 [Bos taurus].
          Length = 94

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 33/86 (38%), Positives = 53/86 (61%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           ++LE  +E +IN+FH +S + G    L K+ELK+L+  EL   L   KD   +DK+ + L
Sbjct: 3   SELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           D N D +V F+E+VVLV  + +  ++
Sbjct: 63  DENGDGEVDFQEYVVLVAALTVACNN 88


>ref|XP_002686115.1| PREDICTED: cornulin-like [Bos taurus].
          Length = 1577

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 31/78 (39%), Positives = 50/78 (64%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M KL   +  +I+IF+QY+ + G  D L K ELK+L+  E    LKN  D  T+D I QN
Sbjct: 1   MPKLLQSIVTVIDIFYQYANQAGECDMLNKAELKELLENEFGQILKNPDDPDTVDIIMQN 60

Query: 253 LDANQDEQVSFKEFVVLV 306
           LD +++++V F E+++++
Sbjct: 61  LDHDRNKKVEFTEYLLMI 78


>ref|XP_001255648.1| PREDICTED: cornulin [Bos taurus].
          Length = 1606

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 31/78 (39%), Positives = 50/78 (64%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M KL   +  +I+IF+QY+ + G  D L K ELK+L+  E    LKN  D  T+D I QN
Sbjct: 1   MPKLLQSIVTVIDIFYQYANQAGECDMLNKAELKELLENEFGQILKNPDDPDTVDIIMQN 60

Query: 253 LDANQDEQVSFKEFVVLV 306
           LD +++++V F E+++++
Sbjct: 61  LDHDRNKKVEFTEYLLMI 78


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,575,515
Number of extensions: 773407
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 1908
Number of HSP's successfully gapped: 33
Length of query: 258
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 158
Effective length of database: 14,372,574
Effective search space: 2270866692
Effective search space used: 2270866692
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000147
         (776 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_547585.2| PREDICTED: similar to Calgranulin B (Migration ...    96   3e-20
Alignment   gi|NP_001139616.1| protein S100-A8 [Canis lupus familiaris].          72   6e-13
Alignment   gi|XP_852856.1| PREDICTED: similar to S-100P protein [Canis fam...    70   3e-12
Alignment   gi|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chai...    67   1e-11
Alignment   gi|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chai...    67   1e-11
Alignment   gi|XP_540326.2| PREDICTED: similar to hornerin [Canis familiari...    66   3e-11
Alignment   gi|XP_548737.2| PREDICTED: similar to S-100 calcium-binding pro...    64   2e-10
Alignment   gi|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium...    62   4e-10
Alignment   gi|NP_001003161.1| protein S100-A4 [Canis lupus familiaris].          62   8e-10
Alignment   gi|XP_537267.2| PREDICTED: similar to S100 calcium-binding prot...    61   1e-09

>ref|XP_547585.2| PREDICTED: similar to Calgranulin B (Migration inhibitory
           factor-related protein 14) (MRP-14) (P14) (Leukocyte L1
           complex heavy chain) (S100 calcium-binding protein A9)
           (Calprotectin L1H subunit) [Canis familiaris].
          Length = 352

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 47/101 (46%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
 Frame = +1

Query: 46  LKGERKVGKMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKD 222
           L+  +   +M++LE  +E IINIFHQYSVRL H D L ++E+KQL+ KELPN L K  K+
Sbjct: 218 LECRKMADQMSQLECSIETIINIFHQYSVRLEHPDKLNQKEMKQLVKKELPNFLKKQKKN 277

Query: 223 QGTIDKIFQNLDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
              I+KI ++LD N D++++F+EF +LV  + + +H+ +HK
Sbjct: 278 DNAINKIMEDLDTNGDKELNFEEFSILVARLTVASHEEMHK 318


>ref|NP_001139616.1| protein S100-A8 [Canis lupus familiaris].
          Length = 89

 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 36/92 (39%), Positives = 58/92 (63%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           +T+LE  +  +I ++H+YS+  G+Y  L + +LK+L+  E P  +K  KD    D  FQ 
Sbjct: 2   LTELESAINSLIEVYHKYSLVKGNYHALYRDDLKKLLETECPQYMKK-KDA---DTWFQE 57

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD N D  ++F+EF++LV  V + +H +IHKE
Sbjct: 58  LDVNSDGAINFEEFLILVIKVGVASHKDIHKE 89


>ref|XP_852856.1| PREDICTED: similar to S-100P protein [Canis familiaris].
          Length = 197

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 35/86 (40%), Positives = 54/86 (62%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           MT+LE  +  II++F +Y+   G   +L K ELK L+ KELP  L+  +D+ ++DK+ ++
Sbjct: 103 MTELETAMGMIISVFARYAGVEGSKQSLTKGELKVLMEKELPGFLQTKRDRDSVDKLLKD 162

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAH 330
           LDAN D +V F EF+V V  +    H
Sbjct: 163 LDANGDAEVDFSEFIVFVATLTAACH 188


>ref|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chain (S100
           calcium-binding protein A1) isoform 1 [Canis
           familiaris].
          Length = 94

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 33/86 (38%), Positives = 54/86 (62%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           ++LE  +E +IN+FH +S + G+   L K+ELK+L+  EL   L   KD   +DK+ + L
Sbjct: 3   SELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           D N D +V F+E+VVLV  + +  ++
Sbjct: 63  DENGDGEVDFQEYVVLVAALTVACNN 88


>ref|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chain (S100
           calcium-binding protein A1) isoform 2 [Canis
           familiaris].
          Length = 94

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 33/86 (38%), Positives = 54/86 (62%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           ++LE  +E +IN+FH +S + G+   L K+ELK+L+  EL   L   KD   +DK+ + L
Sbjct: 3   SELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           D N D +V F+E+VVLV  + +  ++
Sbjct: 63  DENGDGEVDFQEYVVLVAALTVACNN 88


>ref|XP_540326.2| PREDICTED: similar to hornerin [Canis familiaris].
          Length = 1517

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 31/78 (39%), Positives = 51/78 (65%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M+KL   +  +I++F+QY+ + G  D L K ELK+L+  E    LKN  D  T+D I QN
Sbjct: 1   MSKLLQSIVTVIDVFYQYATQDGECDMLNKEELKELLENEFHQILKNPDDPDTVDIIMQN 60

Query: 253 LDANQDEQVSFKEFVVLV 306
           LD + D++V+F E+++++
Sbjct: 61  LDQDHDKKVNFIEYLLMI 78


>ref|XP_548737.2| PREDICTED: similar to S-100 calcium-binding protein beta subunit
           (S-100 protein, beta chain) [Canis familiaris].
          Length = 456

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 32/92 (34%), Positives = 52/92 (56%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M++LE     ++++F QYS R G    L K ++K+LI  EL + L+  K+Q  +DK+ + 
Sbjct: 365 MSQLEKAALALLDVFQQYSARAGGGRRLRKADVKELIGSELAHFLEEIKEQEVVDKVMET 424

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD++ D +  F+EFV  V  V    H+    E
Sbjct: 425 LDSDGDGECDFQEFVAFVAMVTTACHEFFEHE 456


>ref|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein
           A11) (S100C protein) (MLN 70) [Canis familiaris].
          Length = 103

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 31/92 (33%), Positives = 52/92 (56%)
 Frame = +1

Query: 61  KVGKMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDK 240
           K+   T+ E  +E +I +F +++ + G+  TL K E    +  EL    KN KD G +D+
Sbjct: 3   KMSSPTETERCIESLIAVFQKFAGKEGNNCTLSKTEFLTFMNTELAAFTKNQKDPGVLDR 62

Query: 241 IFQNLDANQDEQVSFKEFVVLVTDVLITAHDN 336
           + + LD N D Q+ F+EF+ L+  + I  HD+
Sbjct: 63  MMKKLDLNSDGQLDFQEFLNLIGGMAIACHDS 94


>ref|NP_001003161.1| protein S100-A4 [Canis lupus familiaris].
          Length = 101

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 29/84 (34%), Positives = 52/84 (61%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
           LE  L+ +++ FH+YS + G    L + ELK+L+ +ELP+ L    D+    K+  NLD+
Sbjct: 5   LEKALDVMVSTFHKYSGKEGDKFKLNRSELKELLMRELPSFLGKRTDEAAFQKLMSNLDS 64

Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
           N+D +V F+E+ V ++ V +  ++
Sbjct: 65  NRDNEVDFQEYCVFLSCVAMMCNE 88


>ref|XP_537267.2| PREDICTED: similar to S100 calcium-binding protein A5 (S-100D
           protein) [Canis familiaris].
          Length = 93

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 51/86 (59%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T LE  L  +++ FH+YS R G   TL ++ELK+LI KEL   L     +  ID + + L
Sbjct: 3   TPLEKALTTMVSTFHKYSGREGSKLTLSRKELKELIKKEL--CLGEKMKESGIDDLMRTL 60

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           D N D+++ FKE+ V +T + +  +D
Sbjct: 61  DKNSDQEIDFKEYTVFLTTLCMAYND 86


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,584,077
Number of extensions: 729183
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 1922
Number of HSP's successfully gapped: 19
Length of query: 258
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 157
Effective length of database: 15,507,568
Effective search space: 2434688176
Effective search space used: 2434688176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000147
         (776 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005612.1| protein S100-A12 [Homo sapiens].                     134   9e-32
Alignment   gi|NP_002956.1| protein S100-A9 [Homo sapiens].                       90   2e-18
Alignment   gi|NP_005971.1| protein S100-P [Homo sapiens].                        76   3e-14
Alignment   gi|NP_006263.1| protein S100-B [Homo sapiens].                        69   5e-12
Alignment   gi|NP_001009931.1| hornerin [Homo sapiens].                           67   1e-11
Alignment   gi|NP_570128.2| protein S100-Z [Homo sapiens].                        67   2e-11
Alignment   gi|NP_006262.1| protein S100-A1 [Homo sapiens].                       66   3e-11
Alignment   gi|NP_002007.1| filaggrin [Homo sapiens].                             65   9e-11
Alignment   gi|NP_062427.1| protein S100-A4 [Homo sapiens].                       65   9e-11
Alignment   gi|NP_002952.1| protein S100-A4 [Homo sapiens].                       65   9e-11

>ref|NP_005612.1| protein S100-A12 [Homo sapiens].
          Length = 92

 Score =  134 bits (337), Expect = 9e-32
 Identities = 65/92 (70%), Positives = 75/92 (81%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           MTKLE+HLEGI+NIFHQYSVR GH+DTL K ELKQL+TKEL NT+KN KD+  ID+IFQ 
Sbjct: 1   MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQG 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LDANQDEQV F+EF+ LV   L  AH + HKE
Sbjct: 61  LDANQDEQVDFQEFISLVAIALKAAHYHTHKE 92


>ref|NP_002956.1| protein S100-A9 [Homo sapiens].
          Length = 114

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 43/93 (46%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
 Frame = +1

Query: 70  KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKDQGTIDKIF 246
           KM++LE ++E IIN FHQYSV+LGH DTL + E K+L+ K+L N L K  K++  I+ I 
Sbjct: 4   KMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIM 63

Query: 247 QNLDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
           ++LD N D+Q+SF+EF++L+  +   +H+ +H+
Sbjct: 64  EDLDTNADKQLSFEEFIMLMARLTWASHEKMHE 96


>ref|NP_005971.1| protein S100-P [Homo sapiens].
          Length = 95

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 40/91 (43%), Positives = 55/91 (60%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           MT+LE  +  II++F +YS   G   TL K ELK L+ KELP  L++ KD+  +DK+ ++
Sbjct: 1   MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
           LDAN D QV F EF+V V  +    H    K
Sbjct: 61  LDANGDAQVDFSEFIVFVAAITSACHKYFEK 91


>ref|NP_006263.1| protein S100-B [Homo sapiens].
          Length = 92

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 35/92 (38%), Positives = 53/92 (57%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M++LE  +  +I++FHQYS R G    L K ELK+LI  EL + L+  K+Q  +DK+ + 
Sbjct: 1   MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD + D +  F+EF+  V  V    H+    E
Sbjct: 61  LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE 92


>ref|NP_001009931.1| hornerin [Homo sapiens].
          Length = 2850

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 33/92 (35%), Positives = 57/92 (61%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M KL   +  +I++F+QY+ + G YDTL K ELK+L+  E    LKN  D  T+D I Q+
Sbjct: 1   MPKLLQGVITVIDVFYQYATQHGEYDTLNKAELKELLENEFHQILKNPNDPDTVDIILQS 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD + +++V F E+++++  ++   +  I K+
Sbjct: 61  LDRDHNKKVDFTEYLLMIFKLVQARNKIIGKD 92


>ref|NP_570128.2| protein S100-Z [Homo sapiens].
          Length = 99

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 36/86 (41%), Positives = 53/86 (61%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T+LE  ++ +I IFH+YS +      L K ELK L+ +EL   L   K+   +DKI Q+L
Sbjct: 3   TQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQDL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           DAN+D +V F EFVV+V  + +  +D
Sbjct: 63  DANKDNEVDFNEFVVMVAALTVACND 88


>ref|NP_006262.1| protein S100-A1 [Homo sapiens].
          Length = 94

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 33/86 (38%), Positives = 53/86 (61%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           ++LE  +E +IN+FH +S + G    L K+ELK+L+  EL   L   KD   +DK+ + L
Sbjct: 3   SELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMKEL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           D N D +V F+E+VVLV  + +  ++
Sbjct: 63  DENGDGEVDFQEYVVLVAALTVACNN 88


>ref|NP_002007.1| filaggrin [Homo sapiens].
          Length = 4061

 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 32/92 (34%), Positives = 56/92 (60%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M+ L +++  IIN+F QYS +  + DTL K+ELK+L+ KE    LKN  D   +D    +
Sbjct: 1   MSTLLENIFAIINLFKQYSKKDKNTDTLSKKELKELLEKEFRQILKNPDDPDMVDVFMDH 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD + ++++ F EF+++V  +    +++  KE
Sbjct: 61  LDIDHNKKIDFTEFLLMVFKLAQAYYESTRKE 92


>ref|NP_062427.1| protein S100-A4 [Homo sapiens].
          Length = 101

 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 30/84 (35%), Positives = 53/84 (63%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
           LE  L+ +++ FH+YS + G    L K ELK+L+T+ELP+ L    D+    K+  NLD+
Sbjct: 5   LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64

Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
           N+D +V F+E+ V ++ + +  ++
Sbjct: 65  NRDNEVDFQEYCVFLSCIAMMCNE 88


>ref|NP_002952.1| protein S100-A4 [Homo sapiens].
          Length = 101

 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 30/84 (35%), Positives = 53/84 (63%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
           LE  L+ +++ FH+YS + G    L K ELK+L+T+ELP+ L    D+    K+  NLD+
Sbjct: 5   LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64

Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
           N+D +V F+E+ V ++ + +  ++
Sbjct: 65  NRDNEVDFQEYCVFLSCIAMMCNE 88


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,899,350
Number of extensions: 703821
Number of successful extensions: 2005
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 26
Length of query: 258
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 158
Effective length of database: 15,000,764
Effective search space: 2370120712
Effective search space used: 2370120712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000147
         (776 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001074628.1| protein S100-Z [Mus musculus].                     73   3e-13
Alignment   gi|XP_619923.1| PREDICTED: protein S100-A9-like [Mus musculus].       73   3e-13
Alignment   gi|NP_033140.1| protein S100-A9 [Mus musculus].                       73   3e-13
Alignment   gi|NP_035441.1| protein S100-A4 [Mus musculus].                       71   1e-12
Alignment   gi|NP_033141.1| protein S100-B [Mus musculus].                        69   3e-12
Alignment   gi|NP_035439.1| protein S100-A1 [Mus musculus].                       67   1e-11
Alignment   gi|NP_038678.1| protein S100-A8 [Mus musculus].                       66   3e-11
Alignment   gi|NP_598459.2| hornerin [Mus musculus].                              65   4e-11
Alignment   gi|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus muscul...    61   8e-10
Alignment   gi|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [...    61   8e-10

>ref|NP_001074628.1| protein S100-Z [Mus musculus].
          Length = 99

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 38/86 (44%), Positives = 54/86 (62%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T+LE  ++ +I IFH+YS + G    L K ELK L+ +EL   L   KD   +DKI Q+L
Sbjct: 3   TQLEMAMDTMIRIFHRYSCKEGDRFKLNKGELKMLLQRELTEFLTCQKDPQLVDKIMQDL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           DAN+D +V F EFVV+V  + +  +D
Sbjct: 63  DANKDNEVDFNEFVVMVAALTVACND 88


>ref|XP_619923.1| PREDICTED: protein S100-A9-like [Mus musculus].
          Length = 117

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKDQGTIDKIFQNLD 258
           +E  +E II IFHQ+S + G  DTL ++E K L+  ++PN+  K  KDQ  +  + ++ D
Sbjct: 1   MEQAMENIIKIFHQHSAKEGDPDTLSQKEFKDLVNDDMPNSFKKEKKDQKAMKYMMEDFD 60

Query: 259 ANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
            N+D  +SF EFV L+  VL   H+  H++
Sbjct: 61  TNEDATLSFDEFVELIRKVLFKRHEASHEQ 90


>ref|NP_033140.1| protein S100-A9 [Mus musculus].
          Length = 113

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 33/91 (36%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTK-DQGTIDKIFQN 252
           +++E  +  II+ FHQYS + GH DTL K+E +Q++  +L   +K  K ++  I+ I ++
Sbjct: 7   SQMERSITTIIDTFHQYSRKEGHPDTLSKKEFRQMVEAQLATFMKKEKRNEALINDIMED 66

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
           LD NQD Q+SF+E ++L+  ++   H+ +H+
Sbjct: 67  LDTNQDNQLSFEECMMLMAKLIFACHEKLHE 97


>ref|NP_035441.1| protein S100-A4 [Mus musculus].
          Length = 101

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 36/103 (34%), Positives = 60/103 (58%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
           LE+ L+ I++ FH+YS + G    L K ELK+L+T+ELP+ L    D+    K+  NLD+
Sbjct: 5   LEEALDVIVSTFHKYSGKEGDKFKLNKTELKELLTRELPSFLGKRTDEAAFQKVMSNLDS 64

Query: 262 NQDEQVSFKEFVVLVTDVLITAHDNIHKE*EALRGCPPTWPQE 390
           N+D +V F+E+ V ++ + +  +       E   GCP   P++
Sbjct: 65  NRDNEVDFQEYCVFLSCIAMMCN-------EFFEGCPDKEPRK 100


>ref|NP_033141.1| protein S100-B [Mus musculus].
          Length = 92

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 35/92 (38%), Positives = 53/92 (57%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M++LE  +  +I++FHQYS R G    L K ELK+LI  EL + L+  K+Q  +DK+ + 
Sbjct: 1   MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD + D +  F+EF+  V  V    H+    E
Sbjct: 61  LDEDGDGECDFQEFMAFVAMVTTACHEFFEHE 92


>ref|NP_035439.1| protein S100-A1 [Mus musculus].
          Length = 94

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 34/86 (39%), Positives = 52/86 (60%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           ++LE  +E +IN+FH +S + G    L K+ELK L+  EL   L   KD   +DK+ + L
Sbjct: 3   SELESAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSGFLDVQKDADAVDKVMKEL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           D N D +V FKE+VVLV  + +  ++
Sbjct: 63  DENGDGEVDFKEYVVLVAALTVACNN 88


>ref|NP_038678.1| protein S100-A8 [Mus musculus].
          Length = 89

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 30/91 (32%), Positives = 55/91 (60%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           ++LE  L  +I+++H YS   G++  L K + K+++T E P  ++N      I+ +F+ L
Sbjct: 3   SELEKALSNLIDVYHNYSNIQGNHHALYKNDFKKMVTTECPQFVQNIN----IENLFREL 58

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           D N D  ++F+EF+ +V  V + +H + HKE
Sbjct: 59  DINSDNAINFEEFLAMVIKVGVASHKDSHKE 89


>ref|NP_598459.2| hornerin [Mus musculus].
          Length = 3234

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 31/92 (33%), Positives = 54/92 (58%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M KL + +  +I++F+QY+   G+ D L K E+K+L+  E    LKN  D  T+D I QN
Sbjct: 1   MPKLLESIVTVIDVFYQYATEYGNCDMLSKEEMKELLVTEFHQILKNPDDPDTVDIIMQN 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD + + +V F E+++++  +    +  I K+
Sbjct: 61  LDRDHNHKVDFTEYLLMILKLTKACNKIIGKD 92


>ref|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus musculus].
          Length = 96

 Score = 61.2 bits (147), Expect = 8e-10
 Identities = 31/87 (35%), Positives = 49/87 (56%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T+ E  +E +I +F +YS + G+   L K E    +  EL    KN KD G +D++ + L
Sbjct: 3   TETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHDN 336
           D N D Q+ F+EF+ L+  + I  HD+
Sbjct: 63  DLNCDGQLDFQEFLNLIGSLAIACHDS 89


>ref|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [Mus musculus].
          Length = 96

 Score = 61.2 bits (147), Expect = 8e-10
 Identities = 31/87 (35%), Positives = 49/87 (56%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T+ E  +E +I +F +YS + G+   L K E    +  EL    KN KD G +D++ + L
Sbjct: 3   TETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHDN 336
           D N D Q+ F+EF+ L+  + I  HD+
Sbjct: 63  DLNCDGQLDFQEFLNLIGSLAIACHDS 89


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,384,298
Number of extensions: 589309
Number of successful extensions: 1712
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 1702
Number of HSP's successfully gapped: 21
Length of query: 258
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 159
Effective length of database: 12,643,995
Effective search space: 2010395205
Effective search space used: 2010395205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000147
         (776 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001153744.1| protein S100-A12 [Sus scrofa].                    186   1e-47
Alignment   gi|NP_001171377.1| RNA-binding region containing protein 2-like...    99   3e-21
Alignment   gi|NP_001153743.1| protein S100-A8 [Sus scrofa].                      72   4e-13
Alignment   gi|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa].       70   2e-12
Alignment   gi|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa].      69   4e-12
Alignment   gi|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa].       67   1e-11
Alignment   gi|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [S...    65   5e-11
Alignment   gi|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [S...    65   5e-11
Alignment   gi|XP_003125842.2| PREDICTED: filaggrin-like [Sus scrofa].            64   7e-11
Alignment   gi|XP_003125841.2| PREDICTED: filaggrin-2-like [Sus scrofa].          60   1e-09

>ref|NP_001153744.1| protein S100-A12 [Sus scrofa].
          Length = 92

 Score =  186 bits (472), Expect = 1e-47
 Identities = 92/92 (100%), Positives = 92/92 (100%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN
Sbjct: 1   MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE
Sbjct: 61  LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 92


>ref|NP_001171377.1| RNA-binding region containing protein 2-like [Sus scrofa].
          Length = 144

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 48/93 (51%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
 Frame = +1

Query: 70  KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTK-DQGTIDKIF 246
           +M+++E  +E IINIFHQYSVRLG+ DTL ++E KQL+ KELPN LK  K D+  I+ I 
Sbjct: 4   QMSQMECSIETIINIFHQYSVRLGNRDTLNQKEFKQLVKKELPNFLKKQKRDEKAINHIL 63

Query: 247 QNLDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
           ++LD N D+Q+SF+EF +LV  + + +H+ +HK
Sbjct: 64  EDLDTNVDKQLSFEEFSMLVAKLTVASHEEMHK 96


>ref|NP_001153743.1| protein S100-A8 [Sus scrofa].
          Length = 89

 Score = 71.6 bits (174), Expect = 4e-13
 Identities = 37/92 (40%), Positives = 58/92 (63%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           +T LE  +  +I +FH+YS+  G+Y  +   +LK+L+  E P  +K  KD  T    F+ 
Sbjct: 2   LTDLESAINSLIEVFHKYSLEKGNYHAIYADDLKRLLETECPKYMKK-KDAETW---FKE 57

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD N+D  V+F+EF++LV  V + AH++IHKE
Sbjct: 58  LDINKDGAVNFEEFLILVIKVGVEAHEDIHKE 89


>ref|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa].
          Length = 92

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 35/92 (38%), Positives = 54/92 (58%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           M++LE  +  +I++FHQYS R G    L K ELK+LI  EL + L+  K+Q  +DK+ + 
Sbjct: 1   MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINSELSHFLEEIKEQEVVDKVMET 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD++ D +  F+EF+  V  V    H+    E
Sbjct: 61  LDSDGDGECDFQEFMAFVAMVTTACHEFFEHE 92


>ref|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa].
          Length = 94

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 34/84 (40%), Positives = 54/84 (64%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
           LE  L+ +++ FH+YS + G    L K ELK+L+T+ELP+ L   KD   +DK+ + LD 
Sbjct: 5   LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGAQKDADAVDKVMKELDE 64

Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
           N D +V F+E+VVLV  + +  ++
Sbjct: 65  NGDGEVDFQEYVVLVAALTVACNN 88


>ref|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa].
          Length = 99

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 36/86 (41%), Positives = 53/86 (61%)
 Frame = +1

Query: 76  TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
           T+LE  ++ +I  F +YS + G    L K ELK L+ +EL + L   KD   +DKI Q+L
Sbjct: 3   TQLEIAMDIMIRTFPRYSCKEGDRFKLNKGELKMLLQRELTDFLSCQKDPELVDKIMQDL 62

Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
           DAN+D +V F EFVV+V  + +  +D
Sbjct: 63  DANKDNEVDFNEFVVMVAALTVACND 88


>ref|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [Sus scrofa].
          Length = 101

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 30/84 (35%), Positives = 53/84 (63%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
           LE  L+ +++ FH+YS + G    L K ELK+L+T+ELP+ L    D+    K+  NLD+
Sbjct: 5   LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64

Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
           N+D +V F+E+ V ++ + +  ++
Sbjct: 65  NRDNEVDFQEYCVFLSCIAMMCNE 88


>ref|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [Sus scrofa].
          Length = 101

 Score = 64.7 bits (156), Expect = 5e-11
 Identities = 30/84 (35%), Positives = 53/84 (63%)
 Frame = +1

Query: 82  LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
           LE  L+ +++ FH+YS + G    L K ELK+L+T+ELP+ L    D+    K+  NLD+
Sbjct: 5   LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64

Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
           N+D +V F+E+ V ++ + +  ++
Sbjct: 65  NRDNEVDFQEYCVFLSCIAMMCNE 88


>ref|XP_003125842.2| PREDICTED: filaggrin-like [Sus scrofa].
          Length = 3155

 Score = 64.3 bits (155), Expect = 7e-11
 Identities = 31/81 (38%), Positives = 51/81 (62%)
 Frame = +1

Query: 64   VGKMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKI 243
            V +M KL   +  +I++F+QY+ + G  D L K ELK+L+  E    LKN  D  T+D I
Sbjct: 2945 VNQMPKLLQSIVTVIDLFYQYAKQDGECDMLNKAELKELLENEFGQILKNPDDPDTVDII 3004

Query: 244  FQNLDANQDEQVSFKEFVVLV 306
             QNLD + +++V F E+++++
Sbjct: 3005 MQNLDQDHNKKVEFTEYLLMI 3025



 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 30/79 (37%), Positives = 46/79 (58%)
 Frame = +1

Query: 70  KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQ 249
           KM+ L +++  II +FH+YS      DTL K+ELK+L+  E    LKN  D  T D    
Sbjct: 33  KMSSLLENIIAIIELFHKYSKTDKETDTLSKKELKELLEVEFRPVLKNPDDPDTADVFMH 92

Query: 250 NLDANQDEQVSFKEFVVLV 306
            LD + ++++ F EF ++V
Sbjct: 93  ILDVDHNKKIDFTEFFLMV 111


>ref|XP_003125841.2| PREDICTED: filaggrin-2-like [Sus scrofa].
          Length = 1896

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 32/92 (34%), Positives = 53/92 (57%)
 Frame = +1

Query: 73  MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
           MT L   +  +I++F++Y+ + G   TL K ELK+L+ KE    LKN  D  T+D I   
Sbjct: 1   MTDLLRSVVTVIDVFYKYTQQDGECGTLSKDELKELLEKEFRPILKNPDDPDTVDVIMHM 60

Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
           LD + D ++ F EF+++V  + +  +  + KE
Sbjct: 61  LDRDHDRRLDFTEFLLMVFKLAMACNKVLSKE 92


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,152,853
Number of extensions: 611427
Number of successful extensions: 1191
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 29
Length of query: 258
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 161
Effective length of database: 8,928,923
Effective search space: 1437556603
Effective search space used: 1437556603
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000147
         (776 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         478   e-132

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  478 bits (241), Expect = e-132
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                             
Query: 209       agaacaccaaagatcaaggtaccattgacaaaatattccaaaacctggatgccaatcaag 268
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105075531 agaacaccaaagatcaaggtaccattgacaaaatattccaaaacctggatgccaatcaag 105075472

                                                                             
Query: 269       acgaacaggtcagctttaaagaattcgtggtcctggtgactgatgtgctgataactgccc 328
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105075471 acgaacaggtcagctttaaagaattcgtggtcctggtgactgatgtgctgataactgccc 105075412

                                                                             
Query: 329       acgacaacatccacaaggagtaggaagctctaaggggctgtcccccaacgtggccccaag 388
                 |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 105075411 acgacaacatccacaaggagtaggaagctctaaggggcttccccccaacgtggccccaag 105075352

                                                                             
Query: 389       aagactttccctgttcaccagcttgtctgagggaagggagagtaaataaatgtatttttg 448
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105075351 aagactttccctgttcaccagcttgtctgagggaagggagagtaaataaatgtatttttg 105075292

                          
Query: 449       aatagttct 457
                 |||||||||
Sbjct: 105075291 aatagttct 105075283



 Score =  307 bits (155), Expect = 5e-81
 Identities = 158/159 (99%)
 Strand = Plus / Minus

                                                                             
Query: 52        ggtgaacgcaaggttgggaagatgactaagctggaagaccatctggaggggatcatcaac 111
                 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105076136 ggtgaacgcaaggttggaaagatgactaagctggaagaccatctggaggggatcatcaac 105076077

                                                                             
Query: 112       atcttccaccagtactcagttcggttggggcattatgacacccttatcaagcgggagctg 171
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105076076 atcttccaccagtactcagttcggttggggcattatgacacccttatcaagcgggagctg 105076017

                                                        
Query: 172       aagcagctgatcaccaaggaactgcccaacaccctcaag 210
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 105076016 aagcagctgatcaccaaggaactgcccaacaccctcaag 105075978



 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 50/50 (100%)
 Strand = Plus / Minus

                                                                   
Query: 5         accagtgctggcttcttgctacagctccacactcctttgcattgaagggt 54
                 ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105076713 accagtgctggcttcttgctacagctccacactcctttgcattgaagggt 105076664


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,635,050
Number of extensions: 494
Number of successful extensions: 494
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 3
Length of query: 776
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 755
Effective length of database: 2,808,413,156
Effective search space: 2120351932780
Effective search space used: 2120351932780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)