Animal-Genome cDNA 20110601C-000204


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000204
         (1920 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777109.1| ATP synthase subunit alpha, mitochondrial precu...  1018   0.0  
Alignment   gi|NP_786990.1| ATP synthase subunit beta, mitochondrial precur...   105   1e-22
Alignment   gi|NP_788844.2| V-type proton ATPase subunit B, brain isoform i...   103   5e-22
Alignment   gi|NP_001001146.1| V-type proton ATPase subunit B, brain isofor...   103   5e-22
Alignment   gi|NP_788827.1| V-type proton ATPase subunit B, kidney isoform ...   100   3e-21
Alignment   gi|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos t...    68   3e-11

>ref|NP_777109.1| ATP synthase subunit alpha, mitochondrial precursor [Bos taurus].
          Length = 553

 Score = 1018 bits (2631), Expect = 0.0
 Identities = 532/553 (96%), Positives = 536/553 (96%)
 Frame = +3

Query: 108  MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
            MLSV              GLVSKNALGSSF+AARNLHASN+RLQKTGTAEVSSILEERIL
Sbjct: 1    MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNSRLQKTGTAEVSSILEERIL 60

Query: 288  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
            GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61   GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120

Query: 468  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
            NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSK RRRVGLKAPGII
Sbjct: 121  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGII 180

Query: 648  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
            PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
            KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300

Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
            RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301  RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360

Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
            GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361  GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420

Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
            AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421  AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480

Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
            IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALL KIR DGKISEE+DAKL
Sbjct: 481  IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKL 540

Query: 1728 KEIVTNFLAGFEA 1766
            KEIVTNFLAGFEA
Sbjct: 541  KEIVTNFLAGFEA 553


>ref|NP_786990.1| ATP synthase subunit beta, mitochondrial precursor [Bos taurus].
          Length = 528

 Score =  105 bits (262), Expect = 1e-22
 Identities = 101/401 (25%), Positives = 174/401 (43%), Gaps = 11/401 (2%)
 Frame = +3

Query: 453  VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
            + + G + L++ G  V  +GA + +PVG E LGR+++ +G  ID +GPI +K    +  +
Sbjct: 111  IAMDGTEGLVR-GQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 169

Query: 633  APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
            AP  +     +E + TGIK VD L P  +G +  + G    GKT + ++ I N  + + G
Sbjct: 170  APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229

Query: 813  TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
                   Y ++  +G++      L   + ++      DA     +V    ++    +   
Sbjct: 230  -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282

Query: 975  PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
              +G ++ EYFRD  G+  L+  D++ +   A  ++S LL R P    Y   +      +
Sbjct: 283  ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342

Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
             ER          GS+T++  I   A D++   P    +  D    L   +   GI PA+
Sbjct: 343  QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398

Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
            +   S SR+   +   +       G  K+ L  Y+ +    A  G D L    +  +SR 
Sbjct: 399  DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457

Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
             ++   L Q          QVA ++    G+L KL P K T
Sbjct: 458  RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 487


>ref|NP_788844.2| V-type proton ATPase subunit B, brain isoform isoform 2 [Bos taurus].
          Length = 511

 Score =  103 bits (257), Expect = 5e-22
 Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
 Frame = +3

Query: 507  TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
            TG I+  PV E++LGRV +  G  ID +GP+       + +    I P  RI   E +QT
Sbjct: 115  TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172

Query: 681  GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
            GI A+D +  I RGQ+  I          IA   I  Q    K+  D  D  ++ + I +
Sbjct: 173  GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231

Query: 846  VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
             A+G    T         +  +M    +    A+D    + + P    +  E+      K
Sbjct: 232  AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291

Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
            H L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++      GS+T
Sbjct: 292  HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349

Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
             +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 350  QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405


>ref|NP_001001146.1| V-type proton ATPase subunit B, brain isoform isoform 1 [Bos taurus].
          Length = 510

 Score =  103 bits (257), Expect = 5e-22
 Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
 Frame = +3

Query: 507  TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
            TG I+  PV E++LGRV +  G  ID +GP+       + +    I P  RI   E +QT
Sbjct: 114  TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPHFRIYPEEMIQT 171

Query: 681  GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
            GI A+D +  I RGQ+  I          IA   I  Q    K+  D  D  ++ + I +
Sbjct: 172  GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 230

Query: 846  VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
             A+G    T         +  +M    +    A+D    + + P    +  E+      K
Sbjct: 231  AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 290

Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
            H L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++      GS+T
Sbjct: 291  HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 348

Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
             +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 349  QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 404


>ref|NP_788827.1| V-type proton ATPase subunit B, kidney isoform [Bos taurus].
          Length = 513

 Score =  100 bits (250), Expect = 3e-21
 Identities = 96/362 (26%), Positives = 158/362 (43%), Gaps = 14/362 (3%)
 Frame = +3

Query: 327  VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 491
            V S+   +  +  ++  Q  E+V F+    +   G  L +      V VF G   +  + 
Sbjct: 44   VCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQRSGQVLEVSGTKAIVQVFEGTSGIDAQK 103

Query: 492  DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 665
               + TG I+  PV E++LGRV +  G  ID KGP+       + +    I P  RI   
Sbjct: 104  TTCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPV-VMAEDFLDINGQPINPHDRIYPE 161

Query: 666  EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 827
            E ++TGI  +D +  I RGQ+  I          IA         +   K   D  D+  
Sbjct: 162  EMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 221

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
             +  ++ A+G    T             M    +    A+D    + + P    +  E+ 
Sbjct: 222  AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279

Query: 1008 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF 1184
                 KH L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++    
Sbjct: 280  AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR- 338

Query: 1185 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 1364
             GGS+T +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  
Sbjct: 339  -GGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK 397

Query: 1365 AA 1370
            +A
Sbjct: 398  SA 399


>ref|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos taurus].
          Length = 618

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
 Frame = +3

Query: 642  IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
            +  ++    P+ TG + +D+L P  +G    I G    GKT      +I+Q        +
Sbjct: 218  VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 271

Query: 822  KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
                  IYV  G++ + ++++++   +            MK T +V+ T++     +  +
Sbjct: 272  ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 327

Query: 975  PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
             Y+G ++ EYFRD G H  ++ D  S+ A A R++S  L   P    YP    YL +RL 
Sbjct: 328  IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 384

Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
               ERA +   + +    GS++ +  +    GD S  + +  + I      L+ +L  + 
Sbjct: 385  SFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 444

Query: 1317 IRPAINVGLSVSR 1355
              P++N  +S S+
Sbjct: 445  HFPSVNWLISYSK 457


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,383,405
Number of extensions: 1896464
Number of successful extensions: 6085
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6055
Number of HSP's successfully gapped: 6
Length of query: 640
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,074,782
Effective search space: 7473709242
Effective search space used: 7473709242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000204
         (1920 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852877.1| PREDICTED: similar to ATP synthase alpha chain,...   558   e-159
Alignment   gi|XP_537273.2| PREDICTED: similar to ATP synthase alpha chain,...   545   e-155
Alignment   gi|XP_849711.1| PREDICTED: similar to ATP synthase alpha chain,...   521   e-148
Alignment   gi|XP_854346.1| PREDICTED: similar to ATP synthase alpha chain,...   431   e-120
Alignment   gi|XP_853608.1| PREDICTED: similar to ATP synthase alpha chain,...   341   1e-93
Alignment   gi|XP_866483.1| PREDICTED: similar to ATP synthase alpha chain,...   235   1e-61
Alignment   gi|XP_866456.1| PREDICTED: similar to ATP synthase alpha chain,...   188   1e-47
Alignment   gi|XP_853593.1| PREDICTED: similar to ATP synthase alpha chain,...   184   2e-46
Alignment   gi|XP_543263.2| PREDICTED: similar to ATPase, H+ transporting, ...   104   3e-22
Alignment   gi|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, ...   104   3e-22

>ref|XP_852877.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
            precursor isoform 2 [Canis familiaris].
          Length = 436

 Score =  558 bits (1438), Expect = e-159
 Identities = 287/295 (97%), Positives = 293/295 (99%)
 Frame = +3

Query: 882  LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 1061
            LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA
Sbjct: 142  LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 201

Query: 1062 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVS 1241
            VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMND+FGGGSLTALPVIETQAGDVS
Sbjct: 202  VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVS 261

Query: 1242 AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELA 1421
            AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELA
Sbjct: 262  AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELA 321

Query: 1422 QYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDK 1601
            QYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMAIEEQVAVIYAGVRGYLDK
Sbjct: 322  QYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDK 381

Query: 1602 LEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVTNFLAGFEA 1766
            LEPSKITKFE+AFL+HVISQHQALLG IR DGKISE++DAKLKEIVTNFLAGFEA
Sbjct: 382  LEPSKITKFEHAFLAHVISQHQALLGNIRTDGKISEQSDAKLKEIVTNFLAGFEA 436



 Score =  235 bits (599), Expect = 1e-61
 Identities = 129/153 (84%), Positives = 132/153 (86%)
 Frame = +3

Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
           MLSV              GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1   MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60

Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
           GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120

Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDA 566
           NDKLIKEGDIVKRTGAIVDVP    L+ R+ DA
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVP----LVKRLTDA 149


>ref|XP_537273.2| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
            precursor isoform 1 [Canis familiaris].
          Length = 438

 Score =  545 bits (1405), Expect = e-155
 Identities = 287/326 (88%), Positives = 301/326 (92%)
 Frame = +3

Query: 789  NQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQY 968
            N K   +G   K+    + V +G+      +L+ R+ DA  MKYTIVVSATASDAAPLQY
Sbjct: 121  NDKLIKEGDIVKRTGAIVDVPVGE------ELLGRVLDA--MKYTIVVSATASDAAPLQY 172

Query: 969  LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 1148
            LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR
Sbjct: 173  LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 232

Query: 1149 LLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 1328
            LLERAAKMND+FGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA
Sbjct: 233  LLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 292

Query: 1329 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 1508
            INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL
Sbjct: 293  INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 352

Query: 1509 TELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIR 1688
            TELLKQGQY+PMAIEEQVAVIYAGVRGYLDKLEPSKITKFE+AFL+HVISQHQALLG IR
Sbjct: 353  TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFEHAFLAHVISQHQALLGNIR 412

Query: 1689 ADGKISEETDAKLKEIVTNFLAGFEA 1766
             DGKISE++DAKLKEIVTNFLAGFEA
Sbjct: 413  TDGKISEQSDAKLKEIVTNFLAGFEA 438



 Score =  255 bits (651), Expect = 1e-67
 Identities = 136/154 (88%), Positives = 139/154 (90%)
 Frame = +3

Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
           MLSV              GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1   MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60

Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
           GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120

Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDAL 569
           NDKLIKEGDIVKRTGAIVDVPVGEELLGRV+DA+
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVLDAM 154


>ref|XP_849711.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
            precursor [Canis familiaris].
          Length = 285

 Score =  521 bits (1342), Expect = e-148
 Identities = 268/285 (94%), Positives = 275/285 (96%)
 Frame = +3

Query: 912  MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLL 1091
            MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNG HALIIYDDLSKQAVAYRQMSLLL
Sbjct: 1    MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGTHALIIYDDLSKQAVAYRQMSLLL 60

Query: 1092 RRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISI 1271
             RPPGREAYPGDVFYLHSRLLERAAKMND+FGGGSLTALPVIE QAGDVSAY+PTNVISI
Sbjct: 61   CRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIEMQAGDVSAYVPTNVISI 120

Query: 1272 TDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ 1451
            TDGQIFLETELFYKGI PAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ
Sbjct: 121  TDGQIFLETELFYKGICPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ 180

Query: 1452 FGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 1631
            F SDLDAATQQLLSRGVRLTEL KQGQY+PMA EEQVAVIYAGVRGYLDKLEPSKITKFE
Sbjct: 181  FSSDLDAATQQLLSRGVRLTELRKQGQYSPMAFEEQVAVIYAGVRGYLDKLEPSKITKFE 240

Query: 1632 NAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVTNFLAGFEA 1766
            +AFL+HV SQHQALLG IR DGKISE++DAKLKEIVTNFLAGFEA
Sbjct: 241  HAFLAHVFSQHQALLGNIRTDGKISEQSDAKLKEIVTNFLAGFEA 285


>ref|XP_854346.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
            precursor [Canis familiaris].
          Length = 301

 Score =  431 bits (1107), Expect = e-120
 Identities = 247/350 (70%), Positives = 254/350 (72%)
 Frame = +3

Query: 420  MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 599
            MSLNL PD VGVVVFGNDKLIKEGDIVKRT A VDVPVG+EL G VVDALGNA DGKGPI
Sbjct: 1    MSLNLGPDKVGVVVFGNDKLIKEGDIVKRTEATVDVPVGKELPGHVVDALGNATDGKGPI 60

Query: 600  GSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 779
            GSKT RRVGLK PGIIP ISVREPM+TGIKAVDSLVPIGRGQ ELII + QTGKTSIAID
Sbjct: 61   GSKTHRRVGLKGPGIIPPISVREPMKTGIKAVDSLVPIGRGQHELIISNWQTGKTSIAID 120

Query: 780  TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 959
            TIINQK  NDGTDEKKKLYCIYV IGQKRSTVAQL KRLTDADAMKYTIV          
Sbjct: 121  TIINQKHLNDGTDEKKKLYCIYVVIGQKRSTVAQLAKRLTDADAMKYTIV---------- 170

Query: 960  LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 1139
                        GEYFRDN KHALIIYDDLSKQAVAYRQMSLLL R PGREAYP DVFYL
Sbjct: 171  ------------GEYFRDNSKHALIIYDDLSKQAVAYRQMSLLLLRAPGREAYPDDVFYL 218

Query: 1140 HSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGI 1319
            HSRLLE  +  N+ F    L                              L+     K I
Sbjct: 219  HSRLLE--SSQNEQFFWWWL------------------------------LDCFSSQKRI 246

Query: 1320 RPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLD 1469
              AINV LSVS +GS AQT AMKQVAGTMKL LAQYREVAAFAQF SDLD
Sbjct: 247  HLAINVSLSVSCIGSVAQTSAMKQVAGTMKLGLAQYREVAAFAQFSSDLD 296


>ref|XP_853608.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
            precursor [Canis familiaris].
          Length = 205

 Score =  341 bits (875), Expect = 1e-93
 Identities = 180/206 (87%), Positives = 190/206 (92%)
 Frame = +3

Query: 912  MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLL 1091
            MK+TIVVSATASDAAPL+ L PYSG   GEYFRD+GKHALIIYDDLS+QAVAYR MSLLL
Sbjct: 1    MKFTIVVSATASDAAPLRCLTPYSGGGGGEYFRDHGKHALIIYDDLSRQAVAYRWMSLLL 60

Query: 1092 RRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISI 1271
            RRPPGREAYPGDVFYLHS LLERAAKMN++FGGGSLTALPVIETQ GDV+AYIPT+VISI
Sbjct: 61   RRPPGREAYPGDVFYLHSHLLERAAKMNNSFGGGSLTALPVIETQTGDVNAYIPTDVISI 120

Query: 1272 TDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ 1451
            TDGQI L TELFYKGIRPAINV LSVS VGSAAQTRAM+QVAG MKLELAQY E AAFAQ
Sbjct: 121  TDGQI-LGTELFYKGIRPAINVSLSVSCVGSAAQTRAMRQVAGAMKLELAQYCETAAFAQ 179

Query: 1452 FGSDLDAATQQLLSRGVRLTELLKQG 1529
            FGSDLDAATQQ LSRG+RLTELLKQG
Sbjct: 180  FGSDLDAATQQPLSRGMRLTELLKQG 205


>ref|XP_866483.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
            precursor isoform 4 [Canis familiaris].
          Length = 128

 Score =  235 bits (600), Expect = 1e-61
 Identities = 121/128 (94%), Positives = 126/128 (98%)
 Frame = +3

Query: 1383 MKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQV 1562
            MKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMAIEEQV
Sbjct: 1    MKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQV 60

Query: 1563 AVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVT 1742
            AVIYAGVRGYLDKLEPSKITKFE+AFL+HVISQHQALLG IR DGKISE++DAKLKEIVT
Sbjct: 61   AVIYAGVRGYLDKLEPSKITKFEHAFLAHVISQHQALLGNIRTDGKISEQSDAKLKEIVT 120

Query: 1743 NFLAGFEA 1766
            NFLAGFEA
Sbjct: 121  NFLAGFEA 128


>ref|XP_866456.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
           precursor isoform 3 [Canis familiaris].
          Length = 121

 Score =  188 bits (478), Expect = 1e-47
 Identities = 102/118 (86%), Positives = 103/118 (87%)
 Frame = +3

Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
           MLSV              GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1   MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60

Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV 461
           GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV
Sbjct: 61  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV 118


>ref|XP_853593.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
           precursor [Canis familiaris].
          Length = 124

 Score =  184 bits (468), Expect = 2e-46
 Identities = 98/113 (86%), Positives = 103/113 (91%)
 Frame = +3

Query: 162 GLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIG 341
           GLVSKNALGSSF+AARNLHAS TRLQKT TAEV S LEE ILGADTSVDLEETG VLSIG
Sbjct: 12  GLVSKNALGSSFIAARNLHASTTRLQKTSTAEVFSTLEECILGADTSVDLEETGCVLSIG 71

Query: 342 DGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIV 500
           D IA VHGLRNV+AEEMVE SSGLKGMSLNLEPDN+GVV+FGNDKLIKEG I+
Sbjct: 72  DDIACVHGLRNVKAEEMVESSSGLKGMSLNLEPDNIGVVMFGNDKLIKEGYIM 124


>ref|XP_543263.2| PREDICTED: similar to ATPase, H+ transporting, V1 subunit B, isoform
            2 isoform 1 [Canis familiaris].
          Length = 511

 Score =  104 bits (260), Expect = 3e-22
 Identities = 88/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
 Frame = +3

Query: 507  TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
            TG I+  PV E++LGRV +  G  ID +GP+       + +    I P  RI   E +QT
Sbjct: 115  TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172

Query: 681  GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
            GI A+D +  I RGQ+  I          IA   I  Q    K+  D  D  ++ + I +
Sbjct: 173  GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231

Query: 846  VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
             A+G    T         +  +M    +    A+D    + + P    +  E+      K
Sbjct: 232  AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291

Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
            H L+I  D+S  A A R++S      PGR  +PG ++   S + ERA ++      GS+T
Sbjct: 292  HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLSTIYERAGRVEGR--NGSIT 349

Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
             +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 350  QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405


>ref|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, mitochondrial
            precursor isoform 1 [Canis familiaris].
          Length = 527

 Score =  104 bits (260), Expect = 3e-22
 Identities = 100/401 (24%), Positives = 173/401 (43%), Gaps = 11/401 (2%)
 Frame = +3

Query: 453  VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
            + + G + L++ G  V  +GA + +PVG E LGR+++ +G  ID +GPI +K    +  +
Sbjct: 110  IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 168

Query: 633  APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
            AP  +     +E + TGIK VD L P  +G +  + G    GKT + ++ I N  + + G
Sbjct: 169  APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 228

Query: 813  TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
                   Y ++  +G++      L   + ++      DA     +V    ++    +   
Sbjct: 229  -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 281

Query: 975  PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
              +G ++ EYFRD  G+  L+  D++ +   A  ++S LL R P    Y   +      +
Sbjct: 282  ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 341

Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
             ER          GS+T++  I   A D++   P    +  D    L   +   GI PA+
Sbjct: 342  QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 397

Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
            +   S SR+   +           G  K+ L  Y+ +    A  G D L    +  +SR 
Sbjct: 398  DPLDSTSRIMDPNIVGNEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 456

Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
             ++   L Q          QVA ++    G++ KL P K T
Sbjct: 457  RKIQRFLSQ--------PFQVAEVFT---GHMGKLVPLKET 486


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,396,828
Number of extensions: 1937715
Number of successful extensions: 6515
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6484
Number of HSP's successfully gapped: 21
Length of query: 640
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 531
Effective length of database: 15,240,880
Effective search space: 8092907280
Effective search space used: 8092907280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000204
         (1920 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001937.1| ATP synthase subunit alpha, mitochondrial pr...  1014   0.0  
Alignment   gi|NP_004037.1| ATP synthase subunit alpha, mitochondrial precu...  1014   0.0  
Alignment   gi|NP_001677.2| ATP synthase subunit beta, mitochondrial precur...   103   4e-22
Alignment   gi|NP_001684.2| V-type proton ATPase subunit B, brain isoform [...   103   6e-22
Alignment   gi|NP_001683.2| V-type proton ATPase subunit B, kidney isoform ...   100   4e-21
Alignment   gi|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo ...    68   3e-11

>ref|NP_001001937.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
          Length = 553

 Score = 1014 bits (2621), Expect = 0.0
 Identities = 528/553 (95%), Positives = 536/553 (96%)
 Frame = +3

Query: 108  MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
            MLSV              GLVS+NALGSSF+AARN HASNT LQKTGTAE+SSILEERIL
Sbjct: 1    MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSILEERIL 60

Query: 288  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
            GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61   GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120

Query: 468  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
            NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180

Query: 648  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
            PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG+DEKK
Sbjct: 181  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKK 240

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
            KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300

Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
            RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301  RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360

Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
            GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361  GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420

Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
            AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421  AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480

Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
            IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHV+SQHQALLG IRADGKISE++DAKL
Sbjct: 481  IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKL 540

Query: 1728 KEIVTNFLAGFEA 1766
            KEIVTNFLAGFEA
Sbjct: 541  KEIVTNFLAGFEA 553


>ref|NP_004037.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
          Length = 553

 Score = 1014 bits (2621), Expect = 0.0
 Identities = 528/553 (95%), Positives = 536/553 (96%)
 Frame = +3

Query: 108  MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
            MLSV              GLVS+NALGSSF+AARN HASNT LQKTGTAE+SSILEERIL
Sbjct: 1    MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSILEERIL 60

Query: 288  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
            GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61   GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120

Query: 468  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
            NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180

Query: 648  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
            PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG+DEKK
Sbjct: 181  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKK 240

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
            KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300

Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
            RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301  RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360

Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
            GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361  GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420

Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
            AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421  AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480

Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
            IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHV+SQHQALLG IRADGKISE++DAKL
Sbjct: 481  IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKL 540

Query: 1728 KEIVTNFLAGFEA 1766
            KEIVTNFLAGFEA
Sbjct: 541  KEIVTNFLAGFEA 553


>ref|NP_001677.2| ATP synthase subunit beta, mitochondrial precursor [Homo sapiens].
          Length = 529

 Score =  103 bits (258), Expect = 4e-22
 Identities = 100/401 (24%), Positives = 174/401 (43%), Gaps = 11/401 (2%)
 Frame = +3

Query: 453  VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
            + + G + L++ G  V  +GA + +PVG E LGR+++ +G  ID +GPI +K    +  +
Sbjct: 111  IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAE 169

Query: 633  APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
            AP  +     +E + TGIK VD L P  +G +  + G    GKT + ++ I N  + + G
Sbjct: 170  APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229

Query: 813  TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
                   Y ++  +G++      L   + ++      DA     +V    ++    +   
Sbjct: 230  -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282

Query: 975  PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
              +G ++ EYFRD  G+  L+  D++ +   A  ++S LL R P    Y   +      +
Sbjct: 283  ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342

Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
             ER          GS+T++  I   A D++   P    +  D    L   +   GI PA+
Sbjct: 343  QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398

Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
            +   S SR+   +   +       G  K+ L  Y+ +    A  G D L    +  +SR 
Sbjct: 399  DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457

Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
             ++   L Q          QVA ++    G++ KL P K T
Sbjct: 458  RKIQRFLSQ--------PFQVAEVFT---GHMGKLVPLKET 487


>ref|NP_001684.2| V-type proton ATPase subunit B, brain isoform [Homo sapiens].
          Length = 511

 Score =  103 bits (257), Expect = 6e-22
 Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
 Frame = +3

Query: 507  TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
            TG I+  PV E++LGRV +  G  ID +GP+       + +    I P  RI   E +QT
Sbjct: 115  TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172

Query: 681  GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
            GI A+D +  I RGQ+  I          IA   I  Q    K+  D  D  ++ + I +
Sbjct: 173  GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231

Query: 846  VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
             A+G    T         +  +M    +    A+D    + + P    +  E+      K
Sbjct: 232  AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291

Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
            H L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++      GS+T
Sbjct: 292  HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349

Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
             +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 350  QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405


>ref|NP_001683.2| V-type proton ATPase subunit B, kidney isoform [Homo sapiens].
          Length = 513

 Score =  100 bits (250), Expect = 4e-21
 Identities = 97/362 (26%), Positives = 157/362 (43%), Gaps = 14/362 (3%)
 Frame = +3

Query: 327  VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 491
            V S+   +  +  ++  Q  E+V F+    +   G  L +      V VF G   +    
Sbjct: 44   VCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDARK 103

Query: 492  DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 665
               + TG I+  PV E++LGRV +  G  ID KGP+       + +    I P  RI   
Sbjct: 104  TTCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPV-VMAEDFLDINGQPINPHSRIYPE 161

Query: 666  EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 827
            E +QTGI  +D +  I RGQ+  I          IA         +   K   D  D+  
Sbjct: 162  EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 221

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
             +  ++ A+G    T             M    +    A+D    + + P    +  E+ 
Sbjct: 222  AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279

Query: 1008 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF 1184
                 KH L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++    
Sbjct: 280  AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR- 338

Query: 1185 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 1364
             GGS+T +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  
Sbjct: 339  -GGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK 397

Query: 1365 AA 1370
            +A
Sbjct: 398  SA 399


>ref|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo sapiens].
          Length = 617

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
 Frame = +3

Query: 642  IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
            +  ++    P+ TG + +D+L P  +G    I G    GKT      +I+Q        +
Sbjct: 217  VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 270

Query: 822  KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
                  IYV  G++ + ++++++   +            MK T +V+ T++     +  +
Sbjct: 271  ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 326

Query: 975  PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
             Y+G ++ EYFRD G H  ++ D  S+ A A R++S  L   P    YP    YL +RL 
Sbjct: 327  IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 383

Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
               ERA +   + +    GS++ +  +    GD S  + +  + I      L+ +L  + 
Sbjct: 384  SFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 443

Query: 1317 IRPAINVGLSVSR 1355
              P++N  +S S+
Sbjct: 444  HFPSVNWLISYSK 456


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,300,468
Number of extensions: 1931579
Number of successful extensions: 6359
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6303
Number of HSP's successfully gapped: 6
Length of query: 640
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,704,088
Effective search space: 7807870728
Effective search space used: 7807870728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000204
         (1920 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031531.1| ATP synthase subunit alpha, mitochondrial precu...  1014   0.0  
Alignment   gi|NP_058054.2| ATP synthase subunit beta, mitochondrial precur...   105   1e-22
Alignment   gi|NP_031535.2| V-type proton ATPase subunit B, brain isoform [...   103   5e-22
Alignment   gi|NP_598918.1| V-type proton ATPase subunit B, kidney isoform ...    99   9e-21
Alignment   gi|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus m...    68   3e-11

>ref|NP_031531.1| ATP synthase subunit alpha, mitochondrial precursor [Mus musculus].
          Length = 553

 Score = 1014 bits (2622), Expect = 0.0
 Identities = 528/552 (95%), Positives = 536/552 (97%)
 Frame = +3

Query: 108  MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
            MLSV              GLVSKNALGSSFV ARNLHASNTRLQKTGTAE+SSILEERIL
Sbjct: 1    MLSVRVAAAVARALPRRAGLVSKNALGSSFVGARNLHASNTRLQKTGTAEMSSILEERIL 60

Query: 288  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
            GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61   GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120

Query: 468  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
            NDKLIKEGD+VKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121  NDKLIKEGDVVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180

Query: 648  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
            PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
            KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300

Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
            RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMND+FG
Sbjct: 301  RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFG 360

Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
            GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361  GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420

Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
            AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421  AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480

Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
            IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQ+LLG IR+DGKISE++DAKL
Sbjct: 481  IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQSLLGNIRSDGKISEQSDAKL 540

Query: 1728 KEIVTNFLAGFE 1763
            KEIVTNFLAGFE
Sbjct: 541  KEIVTNFLAGFE 552


>ref|NP_058054.2| ATP synthase subunit beta, mitochondrial precursor [Mus musculus].
          Length = 529

 Score =  105 bits (263), Expect = 1e-22
 Identities = 116/484 (23%), Positives = 199/484 (41%), Gaps = 11/484 (2%)
 Frame = +3

Query: 204  ARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQA 383
            AR+  A  +   K GTA    +    ++GA   V  +E         G+  +     VQ 
Sbjct: 43   ARDYAAQASAAPKAGTATGRIVA---VIGAVVDVQFDE---------GLPPILNALEVQG 90

Query: 384  EEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVD 563
             +    S  +  ++ +L    V  +     + +  G  V  +GA + +PVG E LGR+++
Sbjct: 91   RD----SRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMN 146

Query: 564  ALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 743
             +G  ID +GPI +K    +  +AP  I     +E + TGIK VD L P  +G +  + G
Sbjct: 147  VIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 206

Query: 744  DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------ 905
                GKT + ++ I N  + + G       Y ++  +G++      L   + ++      
Sbjct: 207  GAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGVINLK 259

Query: 906  DAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMS 1082
            DA     +V    ++    +     +G ++ EYFRD  G+  L+  D++ +   A  ++S
Sbjct: 260  DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 319

Query: 1083 LLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNV 1262
             LL R P    Y   +      + ER          GS+T++  I   A D++   P   
Sbjct: 320  ALLGRIPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATT 375

Query: 1263 ISITDGQIFLETELFYKGIRPAINVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREV 1436
             +  D    L   +   GI PA++   S SR+   +           G  K+ L  Y+ +
Sbjct: 376  FAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGNEHYDVARGVQKI-LQDYKSL 434

Query: 1437 A-AFAQFGSD-LDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEP 1610
                A  G D L    +  +SR  ++   L Q          QVA ++    G++ KL P
Sbjct: 435  QDIIAILGMDELSEEDKLTVSRARKIQRFLSQ--------PFQVAEVFT---GHMGKLVP 483

Query: 1611 SKIT 1622
             K T
Sbjct: 484  LKET 487


>ref|NP_031535.2| V-type proton ATPase subunit B, brain isoform [Mus musculus].
          Length = 511

 Score =  103 bits (257), Expect = 5e-22
 Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
 Frame = +3

Query: 507  TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
            TG I+  PV E++LGRV +  G  ID +GP+       + +    I P  RI   E +QT
Sbjct: 115  TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172

Query: 681  GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
            GI A+D +  I RGQ+  I          IA   I  Q    K+  D  D  ++ + I +
Sbjct: 173  GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231

Query: 846  VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
             A+G    T         +  +M    +    A+D    + + P    +  E+      K
Sbjct: 232  AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291

Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
            H L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++      GS+T
Sbjct: 292  HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349

Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
             +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 350  QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405


>ref|NP_598918.1| V-type proton ATPase subunit B, kidney isoform [Mus musculus].
          Length = 513

 Score = 99.4 bits (246), Expect = 9e-21
 Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 14/362 (3%)
 Frame = +3

Query: 327  VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 491
            V S+   +  +  ++  Q  E+V F+    +   G  L +      V VF G   +  + 
Sbjct: 44   VCSVNGPLVVLDQVKFAQYAEIVNFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDSQK 103

Query: 492  DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 665
               + TG I+  PV E++LGR+ +  G  ID KGP        + +    I P  RI   
Sbjct: 104  TTCEFTGDILRTPVSEDMLGRIFNGSGKPID-KGP-AVMAEEFLDINGQPINPHDRIYPE 161

Query: 666  EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 827
            E +QTGI  +D +  I RGQ+  I          IA         +   K   D  ++  
Sbjct: 162  EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHEDNF 221

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
             +  ++ A+G    T             M    +    A+D    + + P    +  E+ 
Sbjct: 222  AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279

Query: 1008 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF 1184
                 KH L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++    
Sbjct: 280  AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR- 338

Query: 1185 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 1364
             GGS+T +P++     D++  IP     IT+GQI+++ +L  + + P INV  S+SR+  
Sbjct: 339  -GGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQVYPPINVLPSLSRLMK 397

Query: 1365 AA 1370
            +A
Sbjct: 398  SA 399


>ref|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus musculus].
          Length = 617

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
 Frame = +3

Query: 642  IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
            +  ++    P+ TG + +D+L P  +G    I G    GKT      +I+Q        +
Sbjct: 217  VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 270

Query: 822  KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
                  IYV  G++ + ++++++   +            MK T +V+ T++     +  +
Sbjct: 271  ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 326

Query: 975  PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
             Y+G ++ EYFRD G H  ++ D  S+ A A R++S  L   P    YP    YL +RL 
Sbjct: 327  IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 383

Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
               ERA +   + +    GS++ +  +    GD S  + +  + I      L+ +L  + 
Sbjct: 384  SFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 443

Query: 1317 IRPAINVGLSVSR 1355
              P++N  +S S+
Sbjct: 444  HFPSVNWLISYSK 456


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,453,623
Number of extensions: 1642469
Number of successful extensions: 5191
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5159
Number of HSP's successfully gapped: 5
Length of query: 640
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 532
Effective length of database: 12,373,671
Effective search space: 6582792972
Effective search space used: 6582792972
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000204
         (1920 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [S...  1028   0.0  
Alignment   gi|XP_003353355.1| PREDICTED: hypothetical protein LOC100623706...   158   1e-38
Alignment   gi|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitoch...   105   1e-22
Alignment   gi|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, b...   103   3e-22
Alignment   gi|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, k...   100   5e-21
Alignment   gi|NP_001004042.1| V-type proton ATPase catalytic subunit A [Su...    67   3e-11

>ref|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [Sus scrofa].
          Length = 553

 Score = 1028 bits (2658), Expect = 0.0
 Identities = 539/553 (97%), Positives = 539/553 (97%)
 Frame = +3

Query: 108  MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
            MLSV              GLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL
Sbjct: 1    MLSVRVAAAVARALPRRAGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 60

Query: 288  GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
            GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61   GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120

Query: 468  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
            NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121  NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180

Query: 648  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
            PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181  PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240

Query: 828  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
            KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241  KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300

Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
            RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301  RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360

Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
            GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361  GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420

Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
            AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA
Sbjct: 421  AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 480

Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
            IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL
Sbjct: 481  IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 540

Query: 1728 KEIVTNFLAGFEA 1766
            KEIVTNFLAGFEA
Sbjct: 541  KEIVTNFLAGFEA 553


>ref|XP_003353355.1| PREDICTED: hypothetical protein LOC100623706 [Sus scrofa].
          Length = 220

 Score =  158 bits (399), Expect = 1e-38
 Identities = 83/83 (100%), Positives = 83/83 (100%)
 Frame = +3

Query: 168 VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG 347
           VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG
Sbjct: 33  VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG 92

Query: 348 IARVHGLRNVQAEEMVEFSSGLK 416
           IARVHGLRNVQAEEMVEFSSGLK
Sbjct: 93  IARVHGLRNVQAEEMVEFSSGLK 115


>ref|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitochondrial [Sus scrofa].
          Length = 528

 Score =  105 bits (261), Expect = 1e-22
 Identities = 101/401 (25%), Positives = 174/401 (43%), Gaps = 11/401 (2%)
 Frame = +3

Query: 453  VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
            + + G + L++ G  V  +GA + +PVG E LGR+++ +G  ID +GPI +K    +  +
Sbjct: 111  IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 169

Query: 633  APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
            AP  +     +E + TGIK VD L P  +G +  + G    GKT + ++ I N  + + G
Sbjct: 170  APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229

Query: 813  TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
                   Y ++  +G++      L   + ++      DA     +V    ++    +   
Sbjct: 230  -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282

Query: 975  PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
              +G ++ EYFRD  G+  L+  D++ +   A  ++S LL R P    Y   +      +
Sbjct: 283  ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342

Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
             ER          GS+T++  I   A D++   P    +  D    L   +   GI PA+
Sbjct: 343  QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398

Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
            +   S SR+   +   +       G  K+ L  Y+ +    A  G D L    +  +SR 
Sbjct: 399  DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457

Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
             ++   L Q          QVA ++    G+L KL P K T
Sbjct: 458  RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 487


>ref|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, brain isoform-like [Sus
            scrofa].
          Length = 511

 Score =  103 bits (257), Expect = 3e-22
 Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
 Frame = +3

Query: 507  TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
            TG I+  PV E++LGRV +  G  ID +GP+       + +    I P  RI   E +QT
Sbjct: 115  TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172

Query: 681  GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
            GI A+D +  I RGQ+  I          IA   I  Q    K+  D  D  ++ + I +
Sbjct: 173  GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231

Query: 846  VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
             A+G    T         +  +M    +    A+D    + + P    +  E+      K
Sbjct: 232  AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291

Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
            H L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++      GS+T
Sbjct: 292  HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349

Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
             +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 350  QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405


>ref|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, kidney isoform-like [Sus
            scrofa].
          Length = 460

 Score = 99.8 bits (247), Expect = 5e-21
 Identities = 84/297 (28%), Positives = 134/297 (45%), Gaps = 9/297 (3%)
 Frame = +3

Query: 507  TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
            TG I+  PV E++LGRV +  G  ID  GP+       + +    I P  RI   E +QT
Sbjct: 54   TGDILRTPVSEDMLGRVFNGSGKPIDN-GPV-VMAEDFLDINGQPINPHDRIYPEEMIQT 111

Query: 681  GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKKKLYCI 842
            GI  +D +  I RGQ+  I          IA         +   K   D  D+   +  +
Sbjct: 112  GISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYDDDNFAI--V 169

Query: 843  YVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-G 1019
            + A+G    T         +   M    +    A+D    + + P    +  E+      
Sbjct: 170  FAAMGVNMETARFFKSDFEENGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 229

Query: 1020 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSL 1199
            KH L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++     GGS+
Sbjct: 230  KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--GGSI 287

Query: 1200 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
            T +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A
Sbjct: 288  TQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 344


>ref|NP_001004042.1| V-type proton ATPase catalytic subunit A [Sus scrofa].
          Length = 618

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
 Frame = +3

Query: 642  IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
            +  ++    P+ TG + +D+L P  +G    I G    GKT      +I+Q        +
Sbjct: 218  VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 271

Query: 822  KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
                  IYV  G++ + ++++++   +            MK T +V+ T++     +  +
Sbjct: 272  ----VIIYVGCGERVNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 327

Query: 975  PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
             Y+G ++ EYFRD G H  ++ +  S+ A A R++S  L   P    YP    YL +RL 
Sbjct: 328  IYTGITLSEYFRDMGYHVSMMANSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 384

Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
               ERA +   + +    GS+T +  +    GD S  + +  + I      L+ +L  + 
Sbjct: 385  SFYERAGRVKCLGNPEREGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 444

Query: 1317 IRPAINVGLSVSR 1355
              P++N  +S S+
Sbjct: 445  HFPSVNWLISYSK 457


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,016,739
Number of extensions: 1225009
Number of successful extensions: 3931
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3919
Number of HSP's successfully gapped: 6
Length of query: 640
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 535
Effective length of database: 8,729,747
Effective search space: 4670414645
Effective search space used: 4670414645
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000204
         (1920 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         450   e-123
Sscrofa_Chr02                                                         180   2e-42
Sscrofa_Chr09                                                          94   3e-16
Sscrofa_Chr08                                                          76   8e-11

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  450 bits (227), Expect = e-123
 Identities = 227/227 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1057      aggctgttgcttatcgtcagatgtctctgctgctccgccgaccccccggtcgtgaggcct 1116
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951607 aggctgttgcttatcgtcagatgtctctgctgctccgccgaccccccggtcgtgaggcct 105951666

                                                                             
Query: 1117      atcctggtgacgtgttctacctacactcccgtctgctggagagagcggccaaaatgaacg 1176
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951667 atcctggtgacgtgttctacctacactcccgtctgctggagagagcggccaaaatgaacg 105951726

                                                                             
Query: 1177      atgctttcggtggtggctccttgactgctttaccagtcatcgaaacacaagctggtgatg 1236
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951727 atgctttcggtggtggctccttgactgctttaccagtcatcgaaacacaagctggtgatg 105951786

                                                                
Query: 1237      tgtctgcttacattccaaccaacgtcatttccatcactgatggacag 1283
                 |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951787 tgtctgcttacattccaaccaacgtcatttccatcactgatggacag 105951833



 Score =  424 bits (214), Expect = e-116
 Identities = 214/214 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1686      agggctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaacaaac 1745
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955580 agggctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaacaaac 105955639

                                                                             
Query: 1746      ttcttggctggatttgaagcttaaactcctgtggattaacgttaaataccagtttggttt 1805
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955640 ttcttggctggatttgaagcttaaactcctgtggattaacgttaaataccagtttggttt 105955699

                                                                             
Query: 1806      tgtcattgtttcttctggtaatttccatttgtaataggattactcatactgcagatgtac 1865
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955700 tgtcattgtttcttctggtaatttccatttgtaataggattactcatactgcagatgtac 105955759

                                                   
Query: 1866      agtgactgccttaaaataaaggttccataatgtt 1899
                 ||||||||||||||||||||||||||||||||||
Sbjct: 105955760 agtgactgccttaaaataaaggttccataatgtt 105955793



 Score =  351 bits (177), Expect = 9e-94
 Identities = 177/177 (100%)
 Strand = Plus / Plus

                                                                             
Query: 415       agggtatgtctctgaacttggaacctgacaatgttggtgttgtcgtgtttggaaatgata 474
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950018 agggtatgtctctgaacttggaacctgacaatgttggtgttgtcgtgtttggaaatgata 105950077

                                                                             
Query: 475       agctaattaaggaaggagatattgtgaagagaactggggccatcgtggatgttccagttg 534
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950078 agctaattaaggaaggagatattgtgaagagaactggggccatcgtggatgttccagttg 105950137

                                                                          
Query: 535       gtgaggagctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagg 591
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950138 gtgaggagctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagg 105950194



 Score =  341 bits (172), Expect = 9e-91
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                             
Query: 246       ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 305
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946206 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 105946265

                                                                             
Query: 306       gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 365
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946266 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 105946325

                                                                     
Query: 366       ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 417
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946326 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 105946377



 Score =  341 bits (172), Expect = 9e-91
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                             
Query: 246       ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 305
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947102 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 105947161

                                                                             
Query: 306       gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 365
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947162 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 105947221

                                                                     
Query: 366       ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 417
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947222 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 105947273



 Score =  335 bits (169), Expect = 5e-89
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                             
Query: 589       agggtccaattggttccaagacccgaaggcgagttggcctgaaagcccctgggatcattc 648
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950280 agggtccaattggttccaagacccgaaggcgagttggcctgaaagcccctgggatcattc 105950339

                                                                             
Query: 649       ctcgaatctctgtgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgc 708
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950340 ctcgaatctctgtgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgc 105950399

                                                                  
Query: 709       caattggtcgtggtcagcgtgagctgattattggcgaccgacagactgg 757
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950400 caattggtcgtggtcagcgtgagctgattattggcgaccgacagactgg 105950448



 Score =  307 bits (155), Expect = 1e-80
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                             
Query: 905       agatgccatgaagtacaccattgtggtttcagctactgcgtctgatgctgccccacttca 964
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951340 agatgccatgaagtacaccattgtggtttcagctactgcgtctgatgctgccccacttca 105951399

                                                                             
Query: 965       gtacctggctccttattctggatgttctatgggagaatattttagggataatggcaaaca 1024
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951400 gtacctggctccttattctggatgttctatgggagaatattttagggataatggcaaaca 105951459

                                                    
Query: 1025      tgctttgatcatctatgatgacttatccaaacagg 1059
                 |||||||||||||||||||||||||||||||||||
Sbjct: 105951460 tgctttgatcatctatgatgacttatccaaacagg 105951494



 Score =  303 bits (153), Expect = 2e-79
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1536      gctcccatggctattgaagagcaagtagctgttatctatgcgggtgtcaggggctatctt 1595
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955291 gctcccatggctattgaagagcaagtagctgttatctatgcgggtgtcaggggctatctt 105955350

                                                                             
Query: 1596      gataagctggagcctagcaagatcacaaagtttgagaatgctttcttgtctcacgttatc 1655
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955351 gataagctggagcctagcaagatcacaaagtttgagaatgctttcttgtctcacgttatc 105955410

                                                  
Query: 1656      agccaacaccaagccctgttgggaaaaatcagg 1688
                 |||||||||||||||||||||||||||||||||
Sbjct: 105955411 agccaacaccaagccctgttgggaaaaatcagg 105955443



 Score =  297 bits (150), Expect = 1e-77
 Identities = 150/150 (100%)
 Strand = Plus / Plus

                                                                             
Query: 757       gcaaaacgtcaattgctattgacacaatcattaaccagaaacgattcaatgatggaactg 816
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950650 gcaaaacgtcaattgctattgacacaatcattaaccagaaacgattcaatgatggaactg 105950709

                                                                             
Query: 817       atgaaaagaaaaagctgtactgtatctatgttgctattggtcaaaagagatccactgttg 876
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950710 atgaaaagaaaaagctgtactgtatctatgttgctattggtcaaaagagatccactgttg 105950769

                                               
Query: 877       cccagttggtgaagagacttacagatgcag 906
                 ||||||||||||||||||||||||||||||
Sbjct: 105950770 cccagttggtgaagagacttacagatgcag 105950799



 Score =  293 bits (148), Expect = 2e-76
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1389      caggtggcaggtaccatgaaactggaattggctcagtatcgtgaagttgctgcttttgcc 1448
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954544 caggtggcaggtaccatgaaactggaattggctcagtatcgtgaagttgctgcttttgcc 105954603

                                                                             
Query: 1449      cagttcggttctgacctggatgctgccactcaacaactcttgagtcgtggtgttcgtctg 1508
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954604 cagttcggttctgacctggatgctgccactcaacaactcttgagtcgtggtgttcgtctg 105954663

                                             
Query: 1509      actgagttgctgaagcaaggacagtatg 1536
                 ||||||||||||||||||||||||||||
Sbjct: 105954664 actgagttgctgaagcaaggacagtatg 105954691



 Score =  222 bits (112), Expect = 6e-55
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1282      agattttcttggaaacagaattgttctacaaaggtatccgtcctgccattaacgttggtt 1341
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954318 agattttcttggaaacagaattgttctacaaaggtatccgtcctgccattaacgttggtt 105954377

                                                                     
Query: 1342      tgtctgtatctcgtgtgggatctgctgcccaaaccagggccatgaagcaggt 1393
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954378 tgtctgtatctcgtgtgggatctgctgcccaaaccagggccatgaagcaggt 105954429



 Score =  161 bits (81), Expect = 2e-36
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                             
Query: 167       ggtctccaaaaatgctttgggatcgtcctttgttgctgcaagaaacctccatgcctctaa 226
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105944305 ggtctccaaaaatgctttgggatcgtcctttgttgctgcaagaaacctccatgcctctaa 105944364

                                      
Query: 227       cactcgtcttcagaagactgg 247
                 |||||||||||||||||||||
Sbjct: 105944365 cactcgtcttcagaagactgg 105944385


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  180 bits (91), Expect = 2e-42
 Identities = 177/206 (85%), Gaps = 6/206 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1622     aaagtttgagaatgctttcttgtctcacgttatcagccaacaccaagccctgttgggaaa 1681
                ||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||| ||
Sbjct: 97585809 aaagtttgagaatgctttcttgtctcatgttgtcagccaacaccaaaccctgctgggcaa 97585868

                                                                            
Query: 1682     aatcagggctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaac 1741
                |||||||||| ||||||||      || ||| |||||||||  |||||||| ||||||||
Sbjct: 97585869 aatcagggctaatggaaag------gaggagtcagatgcaacactgaaagaaattgtaac 97585922

                                                                            
Query: 1742     aaacttcttggctggatttgaagcttaaactcctgtggattaacgttaaataccagtttg 1801
                |||||||||||||||| ||||||| | |||| || |||||| || | ||||| |||| ||
Sbjct: 97585923 aaacttcttggctggacttgaagcctgaacttctatggattcacatcaaatagcagtctg 97585982

                                          
Query: 1802     gttttgtcattgtttcttctggtaat 1827
                |||||||||||||||| ||| |||||
Sbjct: 97585983 gttttgtcattgtttcgtctagtaat 97586008


>Sscrofa_Chr09 
||          Length = 153670197

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 150/183 (81%), Gaps = 1/183 (0%)
 Strand = Plus / Minus

                                                                             
Query: 541       agctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagggtccaattg 600
                 ||||| ||||| || ||||||||||||| |||||   || |||||| |||| |||| | |
Sbjct: 101877090 agctgctgggttgtatagtagatgccctgggtaataacactgatggtaaggatccagtag 101877031

                                                                             
Query: 601       gttccaagacccgaaggcgagttggcctgaaagcccctgggatcattcctcgaatctctg 660
                  || ||||||||   |  ||||||||||||| |||| |||||||||| |||  |||||||
Sbjct: 101877030 cttacaagacccatggatgagttggcctgaacgccc-tgggatcatttctctgatctctg 101876972

                                                                             
Query: 661       tgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgccaattggtcgtg 720
                 ||| ||||||| ||||||||||| |||| |||||||| ||  |||||| |||||||| ||
Sbjct: 101876971 tgcaggaaccagtgcagactggcgttaatgctgtggatagtttggtgctaattggtcatg 101876912

                    
Query: 721       gtc 723
                 |||
Sbjct: 101876911 gtc 101876909



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                             
Query: 1014      aatggcaaacatgctttgatcatctatgatgacttatccaaacaggctgttgcttatcgt 1073
                 ||||||| | |||| |||||||| |||||||| |||||||| |||||| |||||||| ||
Sbjct: 101875784 aatggcagaaatgccttgatcatttatgatgagttatccaagcaggctattgcttattgt 101875725

                                            
Query: 1074      cagatgtctctgctgctccgccgaccc 1100
                 ||||| |||||||||||| || |||||
Sbjct: 101875724 cagatatctctgctgctctgcagaccc 101875698



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                             
Query: 1396      caggtaccatgaaactggaattggctcagtatcgtgaagttgctgcttttgcccagttcg 1455
                 |||||||||  || |||||||||||||  | | |||| ||||||||||||||||| |  |
Sbjct: 101875496 caggtaccacaaagctggaattggctccttgtggtgaggttgctgcttttgcccaatgtg 101875437

                                                             
Query: 1456      gttctgacctggatgctgccactcaacaactcttgagtcgtggt 1499
                 ||||||||||  ||||| ||||||||| ||||||||| ||||||
Sbjct: 101875436 gttctgacctccatgcttccactcaactactcttgagacgtggt 101875393


>Sscrofa_Chr08 
||          Length = 148491826

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1690     ctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaacaaacttct 1749
                |||| |||||||  ||||||||| |||||||||||||||| |||| |||||||||||| |
Sbjct: 38426136 ctgaaggaaagagttcagaagagtcagatgcaaagctgaatgagactgtaacaaactttt 38426195

                              
Query: 1750     tggctggatttgaa 1763
                ||||| || |||||
Sbjct: 38426196 tggctagaattgaa 38426209


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,668,038
Number of extensions: 313
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 20
Length of query: 1920
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1898
Effective length of database: 2,808,408,574
Effective search space: 5330359473452
Effective search space used: 5330359473452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)