Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000204
(1920 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777109.1| ATP synthase subunit alpha, mitochondrial precu... 1018 0.0
Alignment gi|NP_786990.1| ATP synthase subunit beta, mitochondrial precur... 105 1e-22
Alignment gi|NP_788844.2| V-type proton ATPase subunit B, brain isoform i... 103 5e-22
Alignment gi|NP_001001146.1| V-type proton ATPase subunit B, brain isofor... 103 5e-22
Alignment gi|NP_788827.1| V-type proton ATPase subunit B, kidney isoform ... 100 3e-21
Alignment gi|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos t... 68 3e-11
>ref|NP_777109.1| ATP synthase subunit alpha, mitochondrial precursor [Bos taurus].
Length = 553
Score = 1018 bits (2631), Expect = 0.0
Identities = 532/553 (96%), Positives = 536/553 (96%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVSKNALGSSF+AARNLHASN+RLQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNSRLQKTGTAEVSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSK RRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGII 180
Query: 648 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360
Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420
Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480
Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALL KIR DGKISEE+DAKL
Sbjct: 481 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLSKIRTDGKISEESDAKL 540
Query: 1728 KEIVTNFLAGFEA 1766
KEIVTNFLAGFEA
Sbjct: 541 KEIVTNFLAGFEA 553
>ref|NP_786990.1| ATP synthase subunit beta, mitochondrial precursor [Bos taurus].
Length = 528
Score = 105 bits (262), Expect = 1e-22
Identities = 101/401 (25%), Positives = 174/401 (43%), Gaps = 11/401 (2%)
Frame = +3
Query: 453 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 111 IAMDGTEGLVR-GQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 169
Query: 633 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 170 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
Query: 813 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Query: 975 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342
Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 343 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398
Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 399 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457
Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
++ L Q QVA ++ G+L KL P K T
Sbjct: 458 RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 487
>ref|NP_788844.2| V-type proton ATPase subunit B, brain isoform isoform 2 [Bos taurus].
Length = 511
Score = 103 bits (257), Expect = 5e-22
Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
Frame = +3
Query: 507 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 681 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 846 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
H L+I D+S A A R++S PGR +PG ++ + + ERA ++ GS+T
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349
Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
+P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 350 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405
>ref|NP_001001146.1| V-type proton ATPase subunit B, brain isoform isoform 1 [Bos taurus].
Length = 510
Score = 103 bits (257), Expect = 5e-22
Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
Frame = +3
Query: 507 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 114 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPHFRIYPEEMIQT 171
Query: 681 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 172 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 230
Query: 846 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
A+G T + +M + A+D + + P + E+ K
Sbjct: 231 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 290
Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
H L+I D+S A A R++S PGR +PG ++ + + ERA ++ GS+T
Sbjct: 291 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 348
Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
+P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 349 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 404
>ref|NP_788827.1| V-type proton ATPase subunit B, kidney isoform [Bos taurus].
Length = 513
Score = 100 bits (250), Expect = 3e-21
Identities = 96/362 (26%), Positives = 158/362 (43%), Gaps = 14/362 (3%)
Frame = +3
Query: 327 VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 491
V S+ + + ++ Q E+V F+ + G L + V VF G + +
Sbjct: 44 VCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQRSGQVLEVSGTKAIVQVFEGTSGIDAQK 103
Query: 492 DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 665
+ TG I+ PV E++LGRV + G ID KGP+ + + I P RI
Sbjct: 104 TTCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPV-VMAEDFLDINGQPINPHDRIYPE 161
Query: 666 EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 827
E ++TGI +D + I RGQ+ I IA + K D D+
Sbjct: 162 EMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 221
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
+ ++ A+G T M + A+D + + P + E+
Sbjct: 222 AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279
Query: 1008 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF 1184
KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 280 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR- 338
Query: 1185 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 1364
GGS+T +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+
Sbjct: 339 -GGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK 397
Query: 1365 AA 1370
+A
Sbjct: 398 SA 399
>ref|NP_776929.1| V-type proton ATPase catalytic subunit A [Bos taurus].
Length = 618
Score = 67.8 bits (164), Expect = 3e-11
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
Frame = +3
Query: 642 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 218 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 271
Query: 822 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 272 ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 327
Query: 975 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
Y+G ++ EYFRD G H ++ D S+ A A R++S L P YP YL +RL
Sbjct: 328 IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 384
Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
ERA + + + GS++ + + GD S + + + I L+ +L +
Sbjct: 385 SFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 444
Query: 1317 IRPAINVGLSVSR 1355
P++N +S S+
Sbjct: 445 HFPSVNWLISYSK 457
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,383,405
Number of extensions: 1896464
Number of successful extensions: 6085
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6055
Number of HSP's successfully gapped: 6
Length of query: 640
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,074,782
Effective search space: 7473709242
Effective search space used: 7473709242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000204
(1920 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852877.1| PREDICTED: similar to ATP synthase alpha chain,... 558 e-159
Alignment gi|XP_537273.2| PREDICTED: similar to ATP synthase alpha chain,... 545 e-155
Alignment gi|XP_849711.1| PREDICTED: similar to ATP synthase alpha chain,... 521 e-148
Alignment gi|XP_854346.1| PREDICTED: similar to ATP synthase alpha chain,... 431 e-120
Alignment gi|XP_853608.1| PREDICTED: similar to ATP synthase alpha chain,... 341 1e-93
Alignment gi|XP_866483.1| PREDICTED: similar to ATP synthase alpha chain,... 235 1e-61
Alignment gi|XP_866456.1| PREDICTED: similar to ATP synthase alpha chain,... 188 1e-47
Alignment gi|XP_853593.1| PREDICTED: similar to ATP synthase alpha chain,... 184 2e-46
Alignment gi|XP_543263.2| PREDICTED: similar to ATPase, H+ transporting, ... 104 3e-22
Alignment gi|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, ... 104 3e-22
>ref|XP_852877.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor isoform 2 [Canis familiaris].
Length = 436
Score = 558 bits (1438), Expect = e-159
Identities = 287/295 (97%), Positives = 293/295 (99%)
Frame = +3
Query: 882 LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 1061
LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA
Sbjct: 142 LVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 201
Query: 1062 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVS 1241
VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMND+FGGGSLTALPVIETQAGDVS
Sbjct: 202 VAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVS 261
Query: 1242 AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELA 1421
AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELA
Sbjct: 262 AYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELA 321
Query: 1422 QYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDK 1601
QYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMAIEEQVAVIYAGVRGYLDK
Sbjct: 322 QYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDK 381
Query: 1602 LEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVTNFLAGFEA 1766
LEPSKITKFE+AFL+HVISQHQALLG IR DGKISE++DAKLKEIVTNFLAGFEA
Sbjct: 382 LEPSKITKFEHAFLAHVISQHQALLGNIRTDGKISEQSDAKLKEIVTNFLAGFEA 436
Score = 235 bits (599), Expect = 1e-61
Identities = 129/153 (84%), Positives = 132/153 (86%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDA 566
NDKLIKEGDIVKRTGAIVDVP L+ R+ DA
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVP----LVKRLTDA 149
>ref|XP_537273.2| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor isoform 1 [Canis familiaris].
Length = 438
Score = 545 bits (1405), Expect = e-155
Identities = 287/326 (88%), Positives = 301/326 (92%)
Frame = +3
Query: 789 NQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQY 968
N K +G K+ + V +G+ +L+ R+ DA MKYTIVVSATASDAAPLQY
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGE------ELLGRVLDA--MKYTIVVSATASDAAPLQY 172
Query: 969 LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 1148
LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR
Sbjct: 173 LAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSR 232
Query: 1149 LLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 1328
LLERAAKMND+FGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA
Sbjct: 233 LLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 292
Query: 1329 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 1508
INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL
Sbjct: 293 INVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRL 352
Query: 1509 TELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIR 1688
TELLKQGQY+PMAIEEQVAVIYAGVRGYLDKLEPSKITKFE+AFL+HVISQHQALLG IR
Sbjct: 353 TELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFEHAFLAHVISQHQALLGNIR 412
Query: 1689 ADGKISEETDAKLKEIVTNFLAGFEA 1766
DGKISE++DAKLKEIVTNFLAGFEA
Sbjct: 413 TDGKISEQSDAKLKEIVTNFLAGFEA 438
Score = 255 bits (651), Expect = 1e-67
Identities = 136/154 (88%), Positives = 139/154 (90%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDAL 569
NDKLIKEGDIVKRTGAIVDVPVGEELLGRV+DA+
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVLDAM 154
>ref|XP_849711.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 285
Score = 521 bits (1342), Expect = e-148
Identities = 268/285 (94%), Positives = 275/285 (96%)
Frame = +3
Query: 912 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLL 1091
MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNG HALIIYDDLSKQAVAYRQMSLLL
Sbjct: 1 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGTHALIIYDDLSKQAVAYRQMSLLL 60
Query: 1092 RRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISI 1271
RPPGREAYPGDVFYLHSRLLERAAKMND+FGGGSLTALPVIE QAGDVSAY+PTNVISI
Sbjct: 61 CRPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIEMQAGDVSAYVPTNVISI 120
Query: 1272 TDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ 1451
TDGQIFLETELFYKGI PAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ
Sbjct: 121 TDGQIFLETELFYKGICPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ 180
Query: 1452 FGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKITKFE 1631
F SDLDAATQQLLSRGVRLTEL KQGQY+PMA EEQVAVIYAGVRGYLDKLEPSKITKFE
Sbjct: 181 FSSDLDAATQQLLSRGVRLTELRKQGQYSPMAFEEQVAVIYAGVRGYLDKLEPSKITKFE 240
Query: 1632 NAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVTNFLAGFEA 1766
+AFL+HV SQHQALLG IR DGKISE++DAKLKEIVTNFLAGFEA
Sbjct: 241 HAFLAHVFSQHQALLGNIRTDGKISEQSDAKLKEIVTNFLAGFEA 285
>ref|XP_854346.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 301
Score = 431 bits (1107), Expect = e-120
Identities = 247/350 (70%), Positives = 254/350 (72%)
Frame = +3
Query: 420 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 599
MSLNL PD VGVVVFGNDKLIKEGDIVKRT A VDVPVG+EL G VVDALGNA DGKGPI
Sbjct: 1 MSLNLGPDKVGVVVFGNDKLIKEGDIVKRTEATVDVPVGKELPGHVVDALGNATDGKGPI 60
Query: 600 GSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 779
GSKT RRVGLK PGIIP ISVREPM+TGIKAVDSLVPIGRGQ ELII + QTGKTSIAID
Sbjct: 61 GSKTHRRVGLKGPGIIPPISVREPMKTGIKAVDSLVPIGRGQHELIISNWQTGKTSIAID 120
Query: 780 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 959
TIINQK NDGTDEKKKLYCIYV IGQKRSTVAQL KRLTDADAMKYTIV
Sbjct: 121 TIINQKHLNDGTDEKKKLYCIYVVIGQKRSTVAQLAKRLTDADAMKYTIV---------- 170
Query: 960 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 1139
GEYFRDN KHALIIYDDLSKQAVAYRQMSLLL R PGREAYP DVFYL
Sbjct: 171 ------------GEYFRDNSKHALIIYDDLSKQAVAYRQMSLLLLRAPGREAYPDDVFYL 218
Query: 1140 HSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGI 1319
HSRLLE + N+ F L L+ K I
Sbjct: 219 HSRLLE--SSQNEQFFWWWL------------------------------LDCFSSQKRI 246
Query: 1320 RPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLD 1469
AINV LSVS +GS AQT AMKQVAGTMKL LAQYREVAAFAQF SDLD
Sbjct: 247 HLAINVSLSVSCIGSVAQTSAMKQVAGTMKLGLAQYREVAAFAQFSSDLD 296
>ref|XP_853608.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 205
Score = 341 bits (875), Expect = 1e-93
Identities = 180/206 (87%), Positives = 190/206 (92%)
Frame = +3
Query: 912 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLL 1091
MK+TIVVSATASDAAPL+ L PYSG GEYFRD+GKHALIIYDDLS+QAVAYR MSLLL
Sbjct: 1 MKFTIVVSATASDAAPLRCLTPYSGGGGGEYFRDHGKHALIIYDDLSRQAVAYRWMSLLL 60
Query: 1092 RRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISI 1271
RRPPGREAYPGDVFYLHS LLERAAKMN++FGGGSLTALPVIETQ GDV+AYIPT+VISI
Sbjct: 61 RRPPGREAYPGDVFYLHSHLLERAAKMNNSFGGGSLTALPVIETQTGDVNAYIPTDVISI 120
Query: 1272 TDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQ 1451
TDGQI L TELFYKGIRPAINV LSVS VGSAAQTRAM+QVAG MKLELAQY E AAFAQ
Sbjct: 121 TDGQI-LGTELFYKGIRPAINVSLSVSCVGSAAQTRAMRQVAGAMKLELAQYCETAAFAQ 179
Query: 1452 FGSDLDAATQQLLSRGVRLTELLKQG 1529
FGSDLDAATQQ LSRG+RLTELLKQG
Sbjct: 180 FGSDLDAATQQPLSRGMRLTELLKQG 205
>ref|XP_866483.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor isoform 4 [Canis familiaris].
Length = 128
Score = 235 bits (600), Expect = 1e-61
Identities = 121/128 (94%), Positives = 126/128 (98%)
Frame = +3
Query: 1383 MKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMAIEEQV 1562
MKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMAIEEQV
Sbjct: 1 MKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQV 60
Query: 1563 AVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKLKEIVT 1742
AVIYAGVRGYLDKLEPSKITKFE+AFL+HVISQHQALLG IR DGKISE++DAKLKEIVT
Sbjct: 61 AVIYAGVRGYLDKLEPSKITKFEHAFLAHVISQHQALLGNIRTDGKISEQSDAKLKEIVT 120
Query: 1743 NFLAGFEA 1766
NFLAGFEA
Sbjct: 121 NFLAGFEA 128
>ref|XP_866456.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor isoform 3 [Canis familiaris].
Length = 121
Score = 188 bits (478), Expect = 1e-47
Identities = 102/118 (86%), Positives = 103/118 (87%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVSKNALGSSF+AARNLHASNT LQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFIAARNLHASNTCLQKTGTAEVSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV 461
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVV 118
>ref|XP_853593.1| PREDICTED: similar to ATP synthase alpha chain, mitochondrial
precursor [Canis familiaris].
Length = 124
Score = 184 bits (468), Expect = 2e-46
Identities = 98/113 (86%), Positives = 103/113 (91%)
Frame = +3
Query: 162 GLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIG 341
GLVSKNALGSSF+AARNLHAS TRLQKT TAEV S LEE ILGADTSVDLEETG VLSIG
Sbjct: 12 GLVSKNALGSSFIAARNLHASTTRLQKTSTAEVFSTLEECILGADTSVDLEETGCVLSIG 71
Query: 342 DGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIV 500
D IA VHGLRNV+AEEMVE SSGLKGMSLNLEPDN+GVV+FGNDKLIKEG I+
Sbjct: 72 DDIACVHGLRNVKAEEMVESSSGLKGMSLNLEPDNIGVVMFGNDKLIKEGYIM 124
>ref|XP_543263.2| PREDICTED: similar to ATPase, H+ transporting, V1 subunit B, isoform
2 isoform 1 [Canis familiaris].
Length = 511
Score = 104 bits (260), Expect = 3e-22
Identities = 88/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
Frame = +3
Query: 507 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 681 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 846 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
H L+I D+S A A R++S PGR +PG ++ S + ERA ++ GS+T
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLSTIYERAGRVEGR--NGSIT 349
Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
+P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 350 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405
>ref|XP_531639.2| PREDICTED: similar to ATP synthase beta chain, mitochondrial
precursor isoform 1 [Canis familiaris].
Length = 527
Score = 104 bits (260), Expect = 3e-22
Identities = 100/401 (24%), Positives = 173/401 (43%), Gaps = 11/401 (2%)
Frame = +3
Query: 453 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 110 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 168
Query: 633 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 169 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 228
Query: 813 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 229 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 281
Query: 975 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 282 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 341
Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 342 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 397
Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
+ S SR+ + G K+ L Y+ + A G D L + +SR
Sbjct: 398 DPLDSTSRIMDPNIVGNEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 456
Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
++ L Q QVA ++ G++ KL P K T
Sbjct: 457 RKIQRFLSQ--------PFQVAEVFT---GHMGKLVPLKET 486
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,396,828
Number of extensions: 1937715
Number of successful extensions: 6515
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6484
Number of HSP's successfully gapped: 21
Length of query: 640
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 531
Effective length of database: 15,240,880
Effective search space: 8092907280
Effective search space used: 8092907280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000204
(1920 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001937.1| ATP synthase subunit alpha, mitochondrial pr... 1014 0.0
Alignment gi|NP_004037.1| ATP synthase subunit alpha, mitochondrial precu... 1014 0.0
Alignment gi|NP_001677.2| ATP synthase subunit beta, mitochondrial precur... 103 4e-22
Alignment gi|NP_001684.2| V-type proton ATPase subunit B, brain isoform [... 103 6e-22
Alignment gi|NP_001683.2| V-type proton ATPase subunit B, kidney isoform ... 100 4e-21
Alignment gi|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo ... 68 3e-11
>ref|NP_001001937.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
Length = 553
Score = 1014 bits (2621), Expect = 0.0
Identities = 528/553 (95%), Positives = 536/553 (96%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVS+NALGSSF+AARN HASNT LQKTGTAE+SSILEERIL
Sbjct: 1 MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 648 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG+DEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKK 240
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360
Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420
Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480
Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHV+SQHQALLG IRADGKISE++DAKL
Sbjct: 481 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKL 540
Query: 1728 KEIVTNFLAGFEA 1766
KEIVTNFLAGFEA
Sbjct: 541 KEIVTNFLAGFEA 553
>ref|NP_004037.1| ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens].
Length = 553
Score = 1014 bits (2621), Expect = 0.0
Identities = 528/553 (95%), Positives = 536/553 (96%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVS+NALGSSF+AARN HASNT LQKTGTAE+SSILEERIL
Sbjct: 1 MLSVRVAAAVVRALPRRAGLVSRNALGSSFIAARNFHASNTHLQKTGTAEMSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 648 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG+DEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKK 240
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360
Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420
Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480
Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHV+SQHQALLG IRADGKISE++DAKL
Sbjct: 481 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALLGTIRADGKISEQSDAKL 540
Query: 1728 KEIVTNFLAGFEA 1766
KEIVTNFLAGFEA
Sbjct: 541 KEIVTNFLAGFEA 553
>ref|NP_001677.2| ATP synthase subunit beta, mitochondrial precursor [Homo sapiens].
Length = 529
Score = 103 bits (258), Expect = 4e-22
Identities = 100/401 (24%), Positives = 174/401 (43%), Gaps = 11/401 (2%)
Frame = +3
Query: 453 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 111 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAE 169
Query: 633 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 170 APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
Query: 813 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Query: 975 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342
Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 343 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398
Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 399 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457
Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
++ L Q QVA ++ G++ KL P K T
Sbjct: 458 RKIQRFLSQ--------PFQVAEVFT---GHMGKLVPLKET 487
>ref|NP_001684.2| V-type proton ATPase subunit B, brain isoform [Homo sapiens].
Length = 511
Score = 103 bits (257), Expect = 6e-22
Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
Frame = +3
Query: 507 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 681 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 846 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
H L+I D+S A A R++S PGR +PG ++ + + ERA ++ GS+T
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349
Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
+P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 350 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405
>ref|NP_001683.2| V-type proton ATPase subunit B, kidney isoform [Homo sapiens].
Length = 513
Score = 100 bits (250), Expect = 4e-21
Identities = 97/362 (26%), Positives = 157/362 (43%), Gaps = 14/362 (3%)
Frame = +3
Query: 327 VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 491
V S+ + + ++ Q E+V F+ + G L + V VF G +
Sbjct: 44 VCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDARK 103
Query: 492 DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 665
+ TG I+ PV E++LGRV + G ID KGP+ + + I P RI
Sbjct: 104 TTCEFTGDILRTPVSEDMLGRVFNGSGKPID-KGPV-VMAEDFLDINGQPINPHSRIYPE 161
Query: 666 EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 827
E +QTGI +D + I RGQ+ I IA + K D D+
Sbjct: 162 EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 221
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
+ ++ A+G T M + A+D + + P + E+
Sbjct: 222 AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279
Query: 1008 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF 1184
KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 280 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR- 338
Query: 1185 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 1364
GGS+T +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+
Sbjct: 339 -GGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMK 397
Query: 1365 AA 1370
+A
Sbjct: 398 SA 399
>ref|NP_001681.2| V-type proton ATPase catalytic subunit A [Homo sapiens].
Length = 617
Score = 67.8 bits (164), Expect = 3e-11
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
Frame = +3
Query: 642 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 217 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 270
Query: 822 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 271 ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 326
Query: 975 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
Y+G ++ EYFRD G H ++ D S+ A A R++S L P YP YL +RL
Sbjct: 327 IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 383
Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
ERA + + + GS++ + + GD S + + + I L+ +L +
Sbjct: 384 SFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 443
Query: 1317 IRPAINVGLSVSR 1355
P++N +S S+
Sbjct: 444 HFPSVNWLISYSK 456
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,300,468
Number of extensions: 1931579
Number of successful extensions: 6359
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6303
Number of HSP's successfully gapped: 6
Length of query: 640
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,704,088
Effective search space: 7807870728
Effective search space used: 7807870728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000204
(1920 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031531.1| ATP synthase subunit alpha, mitochondrial precu... 1014 0.0
Alignment gi|NP_058054.2| ATP synthase subunit beta, mitochondrial precur... 105 1e-22
Alignment gi|NP_031535.2| V-type proton ATPase subunit B, brain isoform [... 103 5e-22
Alignment gi|NP_598918.1| V-type proton ATPase subunit B, kidney isoform ... 99 9e-21
Alignment gi|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus m... 68 3e-11
>ref|NP_031531.1| ATP synthase subunit alpha, mitochondrial precursor [Mus musculus].
Length = 553
Score = 1014 bits (2622), Expect = 0.0
Identities = 528/552 (95%), Positives = 536/552 (97%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVSKNALGSSFV ARNLHASNTRLQKTGTAE+SSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFVGARNLHASNTRLQKTGTAEMSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
NDKLIKEGD+VKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDVVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 648 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMND+FG
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDSFG 360
Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420
Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQY+PMA
Sbjct: 421 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMA 480
Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQ+LLG IR+DGKISE++DAKL
Sbjct: 481 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQSLLGNIRSDGKISEQSDAKL 540
Query: 1728 KEIVTNFLAGFE 1763
KEIVTNFLAGFE
Sbjct: 541 KEIVTNFLAGFE 552
>ref|NP_058054.2| ATP synthase subunit beta, mitochondrial precursor [Mus musculus].
Length = 529
Score = 105 bits (263), Expect = 1e-22
Identities = 116/484 (23%), Positives = 199/484 (41%), Gaps = 11/484 (2%)
Frame = +3
Query: 204 ARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQA 383
AR+ A + K GTA + ++GA V +E G+ + VQ
Sbjct: 43 ARDYAAQASAAPKAGTATGRIVA---VIGAVVDVQFDE---------GLPPILNALEVQG 90
Query: 384 EEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVD 563
+ S + ++ +L V + + + G V +GA + +PVG E LGR+++
Sbjct: 91 RD----SRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMN 146
Query: 564 ALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIG 743
+G ID +GPI +K + +AP I +E + TGIK VD L P +G + + G
Sbjct: 147 VIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 206
Query: 744 DRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------ 905
GKT + ++ I N + + G Y ++ +G++ L + ++
Sbjct: 207 GAGVGKTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGVINLK 259
Query: 906 DAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMS 1082
DA +V ++ + +G ++ EYFRD G+ L+ D++ + A ++S
Sbjct: 260 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 319
Query: 1083 LLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNV 1262
LL R P Y + + ER GS+T++ I A D++ P
Sbjct: 320 ALLGRIPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAPATT 375
Query: 1263 ISITDGQIFLETELFYKGIRPAINVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREV 1436
+ D L + GI PA++ S SR+ + G K+ L Y+ +
Sbjct: 376 FAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGNEHYDVARGVQKI-LQDYKSL 434
Query: 1437 A-AFAQFGSD-LDAATQQLLSRGVRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEP 1610
A G D L + +SR ++ L Q QVA ++ G++ KL P
Sbjct: 435 QDIIAILGMDELSEEDKLTVSRARKIQRFLSQ--------PFQVAEVFT---GHMGKLVP 483
Query: 1611 SKIT 1622
K T
Sbjct: 484 LKET 487
>ref|NP_031535.2| V-type proton ATPase subunit B, brain isoform [Mus musculus].
Length = 511
Score = 103 bits (257), Expect = 5e-22
Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
Frame = +3
Query: 507 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 681 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 846 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
H L+I D+S A A R++S PGR +PG ++ + + ERA ++ GS+T
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349
Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
+P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 350 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405
>ref|NP_598918.1| V-type proton ATPase subunit B, kidney isoform [Mus musculus].
Length = 513
Score = 99.4 bits (246), Expect = 9e-21
Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 14/362 (3%)
Frame = +3
Query: 327 VLSIGDGIARVHGLRNVQAEEMVEFS----SGLKGMSLNLEPDNVGVVVF-GNDKLIKEG 491
V S+ + + ++ Q E+V F+ + G L + V VF G + +
Sbjct: 44 VCSVNGPLVVLDQVKFAQYAEIVNFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDSQK 103
Query: 492 DIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVR 665
+ TG I+ PV E++LGR+ + G ID KGP + + I P RI
Sbjct: 104 TTCEFTGDILRTPVSEDMLGRIFNGSGKPID-KGP-AVMAEEFLDINGQPINPHDRIYPE 161
Query: 666 EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKK 827
E +QTGI +D + I RGQ+ I IA + K D ++
Sbjct: 162 EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHEDNF 221
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
+ ++ A+G T M + A+D + + P + E+
Sbjct: 222 AI--VFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFL 279
Query: 1008 RDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF 1184
KH L+I D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 280 AYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR- 338
Query: 1185 GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGS 1364
GGS+T +P++ D++ IP IT+GQI+++ +L + + P INV S+SR+
Sbjct: 339 -GGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQVYPPINVLPSLSRLMK 397
Query: 1365 AA 1370
+A
Sbjct: 398 SA 399
>ref|NP_031534.2| V-type proton ATPase catalytic subunit A [Mus musculus].
Length = 617
Score = 67.8 bits (164), Expect = 3e-11
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
Frame = +3
Query: 642 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 217 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 270
Query: 822 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 271 ----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 326
Query: 975 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
Y+G ++ EYFRD G H ++ D S+ A A R++S L P YP YL +RL
Sbjct: 327 IYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 383
Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
ERA + + + GS++ + + GD S + + + I L+ +L +
Sbjct: 384 SFYERAGRVKCLGNPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 443
Query: 1317 IRPAINVGLSVSR 1355
P++N +S S+
Sbjct: 444 HFPSVNWLISYSK 456
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,453,623
Number of extensions: 1642469
Number of successful extensions: 5191
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5159
Number of HSP's successfully gapped: 5
Length of query: 640
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 532
Effective length of database: 12,373,671
Effective search space: 6582792972
Effective search space used: 6582792972
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000204
(1920 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [S... 1028 0.0
Alignment gi|XP_003353355.1| PREDICTED: hypothetical protein LOC100623706... 158 1e-38
Alignment gi|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitoch... 105 1e-22
Alignment gi|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, b... 103 3e-22
Alignment gi|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, k... 100 5e-21
Alignment gi|NP_001004042.1| V-type proton ATPase catalytic subunit A [Su... 67 3e-11
>ref|NP_001172071.1| ATP synthase subunit alpha, mitochondrial [Sus scrofa].
Length = 553
Score = 1028 bits (2658), Expect = 0.0
Identities = 539/553 (97%), Positives = 539/553 (97%)
Frame = +3
Query: 108 MLSVXXXXXXXXXXXXXXGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 287
MLSV GLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL
Sbjct: 1 MLSVRVAAAVARALPRRAGLVSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERIL 60
Query: 288 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 467
GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG
Sbjct: 61 GADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFG 120
Query: 468 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 647
NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII
Sbjct: 121 NDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180
Query: 648 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 827
PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK
Sbjct: 181 PRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKK 240
Query: 828 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 1007
KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF
Sbjct: 241 KLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYF 300
Query: 1008 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 1187
RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG
Sbjct: 301 RDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFG 360
Query: 1188 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 1367
GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA
Sbjct: 361 GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSA 420
Query: 1368 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 1547
AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA
Sbjct: 421 AQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYAPMA 480
Query: 1548 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 1727
IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL
Sbjct: 481 IEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRADGKISEETDAKL 540
Query: 1728 KEIVTNFLAGFEA 1766
KEIVTNFLAGFEA
Sbjct: 541 KEIVTNFLAGFEA 553
>ref|XP_003353355.1| PREDICTED: hypothetical protein LOC100623706 [Sus scrofa].
Length = 220
Score = 158 bits (399), Expect = 1e-38
Identities = 83/83 (100%), Positives = 83/83 (100%)
Frame = +3
Query: 168 VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG 347
VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG
Sbjct: 33 VSKNALGSSFVAARNLHASNTRLQKTGTAEVSSILEERILGADTSVDLEETGRVLSIGDG 92
Query: 348 IARVHGLRNVQAEEMVEFSSGLK 416
IARVHGLRNVQAEEMVEFSSGLK
Sbjct: 93 IARVHGLRNVQAEEMVEFSSGLK 115
>ref|XP_001929445.1| PREDICTED: ATP synthase subunit beta, mitochondrial [Sus scrofa].
Length = 528
Score = 105 bits (261), Expect = 1e-22
Identities = 101/401 (25%), Positives = 174/401 (43%), Gaps = 11/401 (2%)
Frame = +3
Query: 453 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLK 632
+ + G + L++ G V +GA + +PVG E LGR+++ +G ID +GPI +K + +
Sbjct: 111 IAMDGTEGLVR-GQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAE 169
Query: 633 APGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDG 812
AP + +E + TGIK VD L P +G + + G GKT + ++ I N + + G
Sbjct: 170 APEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG 229
Query: 813 TDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA------DAMKYTIVVSATASDAAPLQYLA 974
Y ++ +G++ L + ++ DA +V ++ +
Sbjct: 230 -------YSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARV 282
Query: 975 PYSGCSMGEYFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 1151
+G ++ EYFRD G+ L+ D++ + A ++S LL R P Y + +
Sbjct: 283 ALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTM 342
Query: 1152 LERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAI 1331
ER GS+T++ I A D++ P + D L + GI PA+
Sbjct: 343 QERITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAV 398
Query: 1332 NVGLSVSRV--GSAAQTRAMKQVAGTMKLELAQYREVA-AFAQFGSD-LDAATQQLLSRG 1499
+ S SR+ + + G K+ L Y+ + A G D L + +SR
Sbjct: 399 DPLDSTSRIMDPNIVGSEHYDVARGVQKI-LQDYKSLQDIIAILGMDELSEEDKLTVSRA 457
Query: 1500 VRLTELLKQGQYAPMAIEEQVAVIYAGVRGYLDKLEPSKIT 1622
++ L Q QVA ++ G+L KL P K T
Sbjct: 458 RKIQRFLSQ--------PFQVAEVFT---GHLGKLVPLKET 487
>ref|XP_003132841.1| PREDICTED: v-type proton ATPase subunit B, brain isoform-like [Sus
scrofa].
Length = 511
Score = 103 bits (257), Expect = 3e-22
Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 8/296 (2%)
Frame = +3
Query: 507 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
TG I+ PV E++LGRV + G ID +GP+ + + I P RI E +QT
Sbjct: 115 TGDILRTPVSEDMLGRVFNGSGKPID-RGPV-VLAEDFLDIMGQPINPQCRIYPEEMIQT 172
Query: 681 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQ----KRFNDGTDEKKKLYCI-Y 845
GI A+D + I RGQ+ I IA I Q K+ D D ++ + I +
Sbjct: 173 GISAIDGMNSIARGQKIPIFSAAGLPHNEIAAQ-ICRQAGLVKKSKDVVDYSEENFAIVF 231
Query: 846 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-GK 1022
A+G T + +M + A+D + + P + E+ K
Sbjct: 232 AAMGVNMETARFFKSDFEENGSMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEK 291
Query: 1023 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLT 1202
H L+I D+S A A R++S PGR +PG ++ + + ERA ++ GS+T
Sbjct: 292 HVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--NGSIT 349
Query: 1203 ALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
+P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 350 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 405
>ref|XP_003125089.2| PREDICTED: v-type proton ATPase subunit B, kidney isoform-like [Sus
scrofa].
Length = 460
Score = 99.8 bits (247), Expect = 5e-21
Identities = 84/297 (28%), Positives = 134/297 (45%), Gaps = 9/297 (3%)
Frame = +3
Query: 507 TGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIP--RISVREPMQT 680
TG I+ PV E++LGRV + G ID GP+ + + I P RI E +QT
Sbjct: 54 TGDILRTPVSEDMLGRVFNGSGKPIDN-GPV-VMAEDFLDINGQPINPHDRIYPEEMIQT 111
Query: 681 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDT------IINQKRFNDGTDEKKKLYCI 842
GI +D + I RGQ+ I IA + K D D+ + +
Sbjct: 112 GISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYDDDNFAI--V 169
Query: 843 YVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDN-G 1019
+ A+G T + M + A+D + + P + E+
Sbjct: 170 FAAMGVNMETARFFKSDFEENGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCE 229
Query: 1020 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSL 1199
KH L+I D+S A A R++S PGR +PG ++ + + ERA ++ GGS+
Sbjct: 230 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--GGSI 287
Query: 1200 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA 1370
T +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 288 TQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA 344
>ref|NP_001004042.1| V-type proton ATPase catalytic subunit A [Sus scrofa].
Length = 618
Score = 67.0 bits (162), Expect = 3e-11
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 15/253 (5%)
Frame = +3
Query: 642 IIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDE 821
+ ++ P+ TG + +D+L P +G I G GKT +I+Q +
Sbjct: 218 VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT------VISQSLSKYSNSD 271
Query: 822 KKKLYCIYVAIGQKRSTVAQLVKRLTDA---------DAMKYTIVVSATASDAAPLQYLA 974
IYV G++ + ++++++ + MK T +V+ T++ + +
Sbjct: 272 ----VIIYVGCGERVNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAAREAS 327
Query: 975 PYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL- 1151
Y+G ++ EYFRD G H ++ + S+ A A R++S L P YP YL +RL
Sbjct: 328 IYTGITLSEYFRDMGYHVSMMANSTSRWAEALREISGRLAEMPADSGYPA---YLGARLA 384
Query: 1152 --LERAAK---MNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG 1316
ERA + + + GS+T + + GD S + + + I L+ +L +
Sbjct: 385 SFYERAGRVKCLGNPEREGSVTIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 444
Query: 1317 IRPAINVGLSVSR 1355
P++N +S S+
Sbjct: 445 HFPSVNWLISYSK 457
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,016,739
Number of extensions: 1225009
Number of successful extensions: 3931
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3919
Number of HSP's successfully gapped: 6
Length of query: 640
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 535
Effective length of database: 8,729,747
Effective search space: 4670414645
Effective search space used: 4670414645
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000204
(1920 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 450 e-123
Sscrofa_Chr02 180 2e-42
Sscrofa_Chr09 94 3e-16
Sscrofa_Chr08 76 8e-11
>Sscrofa_Chr01
|| Length = 315321322
Score = 450 bits (227), Expect = e-123
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 1057 aggctgttgcttatcgtcagatgtctctgctgctccgccgaccccccggtcgtgaggcct 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951607 aggctgttgcttatcgtcagatgtctctgctgctccgccgaccccccggtcgtgaggcct 105951666
Query: 1117 atcctggtgacgtgttctacctacactcccgtctgctggagagagcggccaaaatgaacg 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951667 atcctggtgacgtgttctacctacactcccgtctgctggagagagcggccaaaatgaacg 105951726
Query: 1177 atgctttcggtggtggctccttgactgctttaccagtcatcgaaacacaagctggtgatg 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951727 atgctttcggtggtggctccttgactgctttaccagtcatcgaaacacaagctggtgatg 105951786
Query: 1237 tgtctgcttacattccaaccaacgtcatttccatcactgatggacag 1283
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951787 tgtctgcttacattccaaccaacgtcatttccatcactgatggacag 105951833
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 1686 agggctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaacaaac 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955580 agggctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaacaaac 105955639
Query: 1746 ttcttggctggatttgaagcttaaactcctgtggattaacgttaaataccagtttggttt 1805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955640 ttcttggctggatttgaagcttaaactcctgtggattaacgttaaataccagtttggttt 105955699
Query: 1806 tgtcattgtttcttctggtaatttccatttgtaataggattactcatactgcagatgtac 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955700 tgtcattgtttcttctggtaatttccatttgtaataggattactcatactgcagatgtac 105955759
Query: 1866 agtgactgccttaaaataaaggttccataatgtt 1899
||||||||||||||||||||||||||||||||||
Sbjct: 105955760 agtgactgccttaaaataaaggttccataatgtt 105955793
Score = 351 bits (177), Expect = 9e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 415 agggtatgtctctgaacttggaacctgacaatgttggtgttgtcgtgtttggaaatgata 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950018 agggtatgtctctgaacttggaacctgacaatgttggtgttgtcgtgtttggaaatgata 105950077
Query: 475 agctaattaaggaaggagatattgtgaagagaactggggccatcgtggatgttccagttg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950078 agctaattaaggaaggagatattgtgaagagaactggggccatcgtggatgttccagttg 105950137
Query: 535 gtgaggagctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagg 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950138 gtgaggagctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagg 105950194
Score = 341 bits (172), Expect = 9e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 246 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946206 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 105946265
Query: 306 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946266 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 105946325
Query: 366 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105946326 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 105946377
Score = 341 bits (172), Expect = 9e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 246 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947102 ggcactgctgaggtttcctctattcttgaagagcgaattcttggcgctgatacctctgtt 105947161
Query: 306 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947162 gaccttgaagagaccgggcgtgttttaagtattggtgatggtattgcccgtgtacacggg 105947221
Query: 366 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105947222 ctgagaaatgttcaggctgaagaaatggtagagttttcttcaggtttaaagg 105947273
Score = 335 bits (169), Expect = 5e-89
Identities = 169/169 (100%)
Strand = Plus / Plus
Query: 589 agggtccaattggttccaagacccgaaggcgagttggcctgaaagcccctgggatcattc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950280 agggtccaattggttccaagacccgaaggcgagttggcctgaaagcccctgggatcattc 105950339
Query: 649 ctcgaatctctgtgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950340 ctcgaatctctgtgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgc 105950399
Query: 709 caattggtcgtggtcagcgtgagctgattattggcgaccgacagactgg 757
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950400 caattggtcgtggtcagcgtgagctgattattggcgaccgacagactgg 105950448
Score = 307 bits (155), Expect = 1e-80
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 905 agatgccatgaagtacaccattgtggtttcagctactgcgtctgatgctgccccacttca 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951340 agatgccatgaagtacaccattgtggtttcagctactgcgtctgatgctgccccacttca 105951399
Query: 965 gtacctggctccttattctggatgttctatgggagaatattttagggataatggcaaaca 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105951400 gtacctggctccttattctggatgttctatgggagaatattttagggataatggcaaaca 105951459
Query: 1025 tgctttgatcatctatgatgacttatccaaacagg 1059
|||||||||||||||||||||||||||||||||||
Sbjct: 105951460 tgctttgatcatctatgatgacttatccaaacagg 105951494
Score = 303 bits (153), Expect = 2e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 1536 gctcccatggctattgaagagcaagtagctgttatctatgcgggtgtcaggggctatctt 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955291 gctcccatggctattgaagagcaagtagctgttatctatgcgggtgtcaggggctatctt 105955350
Query: 1596 gataagctggagcctagcaagatcacaaagtttgagaatgctttcttgtctcacgttatc 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105955351 gataagctggagcctagcaagatcacaaagtttgagaatgctttcttgtctcacgttatc 105955410
Query: 1656 agccaacaccaagccctgttgggaaaaatcagg 1688
|||||||||||||||||||||||||||||||||
Sbjct: 105955411 agccaacaccaagccctgttgggaaaaatcagg 105955443
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 757 gcaaaacgtcaattgctattgacacaatcattaaccagaaacgattcaatgatggaactg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950650 gcaaaacgtcaattgctattgacacaatcattaaccagaaacgattcaatgatggaactg 105950709
Query: 817 atgaaaagaaaaagctgtactgtatctatgttgctattggtcaaaagagatccactgttg 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105950710 atgaaaagaaaaagctgtactgtatctatgttgctattggtcaaaagagatccactgttg 105950769
Query: 877 cccagttggtgaagagacttacagatgcag 906
||||||||||||||||||||||||||||||
Sbjct: 105950770 cccagttggtgaagagacttacagatgcag 105950799
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1389 caggtggcaggtaccatgaaactggaattggctcagtatcgtgaagttgctgcttttgcc 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954544 caggtggcaggtaccatgaaactggaattggctcagtatcgtgaagttgctgcttttgcc 105954603
Query: 1449 cagttcggttctgacctggatgctgccactcaacaactcttgagtcgtggtgttcgtctg 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954604 cagttcggttctgacctggatgctgccactcaacaactcttgagtcgtggtgttcgtctg 105954663
Query: 1509 actgagttgctgaagcaaggacagtatg 1536
||||||||||||||||||||||||||||
Sbjct: 105954664 actgagttgctgaagcaaggacagtatg 105954691
Score = 222 bits (112), Expect = 6e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1282 agattttcttggaaacagaattgttctacaaaggtatccgtcctgccattaacgttggtt 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954318 agattttcttggaaacagaattgttctacaaaggtatccgtcctgccattaacgttggtt 105954377
Query: 1342 tgtctgtatctcgtgtgggatctgctgcccaaaccagggccatgaagcaggt 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105954378 tgtctgtatctcgtgtgggatctgctgcccaaaccagggccatgaagcaggt 105954429
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 167 ggtctccaaaaatgctttgggatcgtcctttgttgctgcaagaaacctccatgcctctaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105944305 ggtctccaaaaatgctttgggatcgtcctttgttgctgcaagaaacctccatgcctctaa 105944364
Query: 227 cactcgtcttcagaagactgg 247
|||||||||||||||||||||
Sbjct: 105944365 cactcgtcttcagaagactgg 105944385
>Sscrofa_Chr02
|| Length = 162569375
Score = 180 bits (91), Expect = 2e-42
Identities = 177/206 (85%), Gaps = 6/206 (2%)
Strand = Plus / Plus
Query: 1622 aaagtttgagaatgctttcttgtctcacgttatcagccaacaccaagccctgttgggaaa 1681
||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||| ||
Sbjct: 97585809 aaagtttgagaatgctttcttgtctcatgttgtcagccaacaccaaaccctgctgggcaa 97585868
Query: 1682 aatcagggctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaac 1741
|||||||||| |||||||| || ||| ||||||||| |||||||| ||||||||
Sbjct: 97585869 aatcagggctaatggaaag------gaggagtcagatgcaacactgaaagaaattgtaac 97585922
Query: 1742 aaacttcttggctggatttgaagcttaaactcctgtggattaacgttaaataccagtttg 1801
|||||||||||||||| ||||||| | |||| || |||||| || | ||||| |||| ||
Sbjct: 97585923 aaacttcttggctggacttgaagcctgaacttctatggattcacatcaaatagcagtctg 97585982
Query: 1802 gttttgtcattgtttcttctggtaat 1827
|||||||||||||||| ||| |||||
Sbjct: 97585983 gttttgtcattgtttcgtctagtaat 97586008
>Sscrofa_Chr09
|| Length = 153670197
Score = 93.7 bits (47), Expect = 3e-16
Identities = 150/183 (81%), Gaps = 1/183 (0%)
Strand = Plus / Minus
Query: 541 agctgttgggtcgtgtagtagatgcccttggtaacgccattgatggaaagggtccaattg 600
||||| ||||| || ||||||||||||| ||||| || |||||| |||| |||| | |
Sbjct: 101877090 agctgctgggttgtatagtagatgccctgggtaataacactgatggtaaggatccagtag 101877031
Query: 601 gttccaagacccgaaggcgagttggcctgaaagcccctgggatcattcctcgaatctctg 660
|| |||||||| | ||||||||||||| |||| |||||||||| ||| |||||||
Sbjct: 101877030 cttacaagacccatggatgagttggcctgaacgccc-tgggatcatttctctgatctctg 101876972
Query: 661 tgcgggaaccaatgcagactggcattaaggctgtggacagcctggtgccaattggtcgtg 720
||| ||||||| ||||||||||| |||| |||||||| || |||||| |||||||| ||
Sbjct: 101876971 tgcaggaaccagtgcagactggcgttaatgctgtggatagtttggtgctaattggtcatg 101876912
Query: 721 gtc 723
|||
Sbjct: 101876911 gtc 101876909
Score = 85.7 bits (43), Expect = 8e-14
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 1014 aatggcaaacatgctttgatcatctatgatgacttatccaaacaggctgttgcttatcgt 1073
||||||| | |||| |||||||| |||||||| |||||||| |||||| |||||||| ||
Sbjct: 101875784 aatggcagaaatgccttgatcatttatgatgagttatccaagcaggctattgcttattgt 101875725
Query: 1074 cagatgtctctgctgctccgccgaccc 1100
||||| |||||||||||| || |||||
Sbjct: 101875724 cagatatctctgctgctctgcagaccc 101875698
Score = 79.8 bits (40), Expect = 5e-12
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 1396 caggtaccatgaaactggaattggctcagtatcgtgaagttgctgcttttgcccagttcg 1455
||||||||| || ||||||||||||| | | |||| ||||||||||||||||| | |
Sbjct: 101875496 caggtaccacaaagctggaattggctccttgtggtgaggttgctgcttttgcccaatgtg 101875437
Query: 1456 gttctgacctggatgctgccactcaacaactcttgagtcgtggt 1499
|||||||||| ||||| ||||||||| ||||||||| ||||||
Sbjct: 101875436 gttctgacctccatgcttccactcaactactcttgagacgtggt 101875393
>Sscrofa_Chr08
|| Length = 148491826
Score = 75.8 bits (38), Expect = 8e-11
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 1690 ctgatggaaagatctcagaagagacagatgcaaagctgaaagagattgtaacaaacttct 1749
|||| ||||||| ||||||||| |||||||||||||||| |||| |||||||||||| |
Sbjct: 38426136 ctgaaggaaagagttcagaagagtcagatgcaaagctgaatgagactgtaacaaactttt 38426195
Query: 1750 tggctggatttgaa 1763
||||| || |||||
Sbjct: 38426196 tggctagaattgaa 38426209
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,668,038
Number of extensions: 313
Number of successful extensions: 313
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 20
Length of query: 1920
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1898
Effective length of database: 2,808,408,574
Effective search space: 5330359473452
Effective search space used: 5330359473452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)