Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000239
(1907 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028790.1| actin, cytoplasmic 2 [Bos taurus]. 758 0.0
Alignment gi|NP_776404.2| actin, cytoplasmic 1 [Bos taurus]. 754 0.0
Alignment gi|NP_001029674.1| actin, aortic smooth muscle [Bos taurus]. 724 0.0
Alignment gi|NP_001013610.1| actin, gamma-enteric smooth muscle [Bos taur... 724 0.0
Alignment gi|NP_001029757.1| actin, alpha cardiac muscle 1 [Bos taurus]. 723 0.0
Alignment gi|XP_002696363.1| PREDICTED: beta actin-like [Bos taurus]. 719 0.0
Alignment gi|XP_001249299.2| PREDICTED: beta actin [Bos taurus]. 719 0.0
Alignment gi|NP_776650.1| actin, alpha skeletal muscle [Bos taurus]. 719 0.0
Alignment gi|NP_001096808.1| beta-centractin [Bos taurus]. 429 e-120
Alignment gi|NP_001180177.1| alpha-centractin [Bos taurus]. 425 e-119
>ref|NP_001028790.1| actin, cytoplasmic 2 [Bos taurus].
Length = 375
Score = 758 bits (1957), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_776404.2| actin, cytoplasmic 1 [Bos taurus].
Length = 375
Score = 754 bits (1947), Expect = 0.0
Identities = 371/375 (98%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M+++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_001029674.1| actin, aortic smooth muscle [Bos taurus].
Length = 377
Score = 724 bits (1870), Expect = 0.0
Identities = 353/374 (94%), Positives = 363/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EE+ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001013610.1| actin, gamma-enteric smooth muscle [Bos taurus].
Length = 376
Score = 724 bits (1868), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 243 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK E
Sbjct: 303 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 363 YDEAGPSIVHRKCF 376
>ref|NP_001029757.1| actin, alpha cardiac muscle 1 [Bos taurus].
Length = 377
Score = 723 bits (1865), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 DEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|XP_002696363.1| PREDICTED: beta actin-like [Bos taurus].
Length = 376
Score = 719 bits (1857), Expect = 0.0
Identities = 347/374 (92%), Positives = 365/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
++E++ALV+DNGSGMCKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQSK
Sbjct: 3 DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHG+VTNWDDMEKIWHHTFYNELRVAP+EHP+LLTEAPLNPK NREKMTQ
Sbjct: 63 RGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFE FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSFTTTAEREIVRD+KEKLCYVALDFEQEM + A+SSSLE+SYE
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDVKEKLCYVALDFEQEMVSTAASSSLERSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPEA+FQPSFLG+ES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 243 LPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDLYANTVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
G+TMYPGIA+RMQKEI ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GSTMYPGIAERMQKEIVALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GP IVHRKCF
Sbjct: 363 YDEAGPPIVHRKCF 376
>ref|XP_001249299.2| PREDICTED: beta actin [Bos taurus].
Length = 376
Score = 719 bits (1857), Expect = 0.0
Identities = 347/374 (92%), Positives = 365/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
++E++ALV+DNGSGMCKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQSK
Sbjct: 3 DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHG+VTNWDDMEKIWHHTFYNELRVAP+EHP+LLTEAPLNPK NREKMTQ
Sbjct: 63 RGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFE FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSFTTTAEREIVRD+KEKLCYVALDFEQEM + A+SSSLE+SYE
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDVKEKLCYVALDFEQEMVSTAASSSLERSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPEA+FQPSFLG+ES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 243 LPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDLYANTVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
G+TMYPGIA+RMQKEI ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GSTMYPGIAERMQKEIVALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GP IVHRKCF
Sbjct: 363 YDEAGPPIVHRKCF 376
>ref|NP_776650.1| actin, alpha skeletal muscle [Bos taurus].
Length = 377
Score = 719 bits (1855), Expect = 0.0
Identities = 350/374 (93%), Positives = 361/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
E+E ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN V+SG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL SLSTFQQMWI+KQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILRSLSTFQQMWITKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001096808.1| beta-centractin [Bos taurus].
Length = 376
Score = 429 bits (1102), Expect = e-120
Identities = 198/369 (53%), Positives = 275/369 (74%), Gaps = 1/369 (0%)
Frame = +2
Query: 119 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+VIDNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+L +
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLAI 71
Query: 299 KYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 475
+YP+EHG+V +W+DME+IW + + ++L+ EEHPVLLTEAPLNP NREK ++ FET
Sbjct: 72 RYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFET 131
Query: 476 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 655
FN PA+++++QAVLSLYA+GRTTG+V+DSGDGVTH VP+YEG+A+PH+I+R+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPVYEGFAMPHSIMRVDIAGRDVS 191
Query: 656 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQ 835
YL +L + G F T+AE E+VR IKE+ CY++++ +++ A + Y LPDG
Sbjct: 192 RYLRLLLRKEGADFHTSAEFEVVRTIKERACYLSINPQKDEALETE----KVQYTLPDGS 247
Query: 836 VITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMY 1015
+ +G RFR PE LFQP +G ES G+HE +I K D+D+R+ L+AN +LSGG+T++
Sbjct: 248 TLNVGPARFRAPELLFQPDLIGDESEGLHEVLVFAIHKSDMDLRRTLFANIMLSGGSTLF 307
Query: 1016 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 1195
G DR+ E+ LAP +KIKI AP ER YS WIGGSILASL TF++MW+SK+EY+E G
Sbjct: 308 KGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDG 367
Query: 1196 PSIVHRKCF 1222
+HRK F
Sbjct: 368 SRAIHRKTF 376
>ref|NP_001180177.1| alpha-centractin [Bos taurus].
Length = 376
Score = 425 bits (1092), Expect = e-119
Identities = 197/369 (53%), Positives = 276/369 (74%), Gaps = 1/369 (0%)
Frame = +2
Query: 119 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+VIDNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+L++
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLSI 71
Query: 299 KYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 475
+YP+EHGIV +W+DME+IW + + ++L+ EEHPVLLTEAPLNP+ NRE+ ++ FET
Sbjct: 72 RYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFET 131
Query: 476 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 655
FN PA+++++QAVLSLYA+GRTTG+V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVS 191
Query: 656 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQ 835
+L L + GY F +++E EIV+ IKE+ CY++++ +++ + Y LPDG
Sbjct: 192 RFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKA----QYYLPDGS 247
Query: 836 VITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMY 1015
I IG RFR PE LF+P +G ES GIHE +I K D+D+R+ L++N VLSGG+T++
Sbjct: 248 TIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVLSGGSTLF 307
Query: 1016 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 1195
G DR+ E+ LAP +KI+I AP ER YS WIGGSILASL TF++MW+SK+EY+E G
Sbjct: 308 KGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDG 367
Query: 1196 PSIVHRKCF 1222
+HRK F
Sbjct: 368 ARSIHRKTF 376
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,746,183
Number of extensions: 1735999
Number of successful extensions: 7073
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 6967
Number of HSP's successfully gapped: 40
Length of query: 635
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 527
Effective length of database: 14,107,870
Effective search space: 7434847490
Effective search space used: 7434847490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000239
(1907 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533132.2| PREDICTED: hypothetical protein XP_533132 [Cani... 752 0.0
Alignment gi|NP_001182774.1| actin, cytoplasmic 1 [Canis lupus familiaris]. 752 0.0
Alignment gi|XP_861856.1| PREDICTED: similar to cytoplasmic beta-actin is... 741 0.0
Alignment gi|XP_534781.2| PREDICTED: similar to Actin, aortic smooth musc... 724 0.0
Alignment gi|XP_533002.2| PREDICTED: similar to Actin, gamma-enteric smoo... 724 0.0
Alignment gi|XP_535424.1| PREDICTED: similar to Actin, alpha cardiac (Alp... 723 0.0
Alignment gi|XP_544346.1| PREDICTED: similar to Actin, cytoplasmic 1 (Bet... 715 0.0
Alignment gi|NP_001003349.1| beta-actin-like [Canis lupus familiaris]. 705 0.0
Alignment gi|XP_536888.2| PREDICTED: similar to cytoplasmic beta-actin is... 700 0.0
Alignment gi|XP_536230.2| PREDICTED: similar to cytoplasmic beta-actin [C... 684 0.0
>ref|XP_533132.2| PREDICTED: hypothetical protein XP_533132 [Canis familiaris].
Length = 375
Score = 752 bits (1942), Expect = 0.0
Identities = 372/375 (99%), Positives = 373/375 (99%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNW+DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK N EKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWEDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKTNGEKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_001182774.1| actin, cytoplasmic 1 [Canis lupus familiaris].
Length = 375
Score = 752 bits (1941), Expect = 0.0
Identities = 370/375 (98%), Positives = 374/375 (99%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M+++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFL MESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLSMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|XP_861856.1| PREDICTED: similar to cytoplasmic beta-actin isoform 9 [Canis
familiaris].
Length = 376
Score = 741 bits (1914), Expect = 0.0
Identities = 368/376 (97%), Positives = 372/376 (98%), Gaps = 1/376 (0%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M+++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFL-GMESCGIHETTFNSIMKCDVDIRKDLYANTVL 994
ELPDGQVITIGNERFRCPEALF FL GMESCGIHETTFNSIMKCDVDIRKDLYANTVL
Sbjct: 241 ELPDGQVITIGNERFRCPEALFHFCFLPGMESCGIHETTFNSIMKCDVDIRKDLYANTVL 300
Query: 995 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 1174
SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 301 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 360
Query: 1175 QEYDESGPSIVHRKCF 1222
QEYDESGPSIVHRKCF
Sbjct: 361 QEYDESGPSIVHRKCF 376
>ref|XP_534781.2| PREDICTED: similar to Actin, aortic smooth muscle (Alpha-actin 2)
[Canis familiaris].
Length = 377
Score = 724 bits (1870), Expect = 0.0
Identities = 353/374 (94%), Positives = 363/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EE+ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|XP_533002.2| PREDICTED: similar to Actin, gamma-enteric smooth muscle (Smooth
muscle gamma actin) (Alpha-actin 3) [Canis familiaris].
Length = 376
Score = 724 bits (1868), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 243 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK E
Sbjct: 303 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 363 YDEAGPSIVHRKCF 376
>ref|XP_535424.1| PREDICTED: similar to Actin, alpha cardiac (Alpha-cardiac actin)
isoform 3 [Canis familiaris].
Length = 377
Score = 723 bits (1865), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 DEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|XP_544346.1| PREDICTED: similar to Actin, cytoplasmic 1 (Beta-actin 1) [Canis
familiaris].
Length = 376
Score = 715 bits (1846), Expect = 0.0
Identities = 344/374 (91%), Positives = 364/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
++E++ALV+DNGSGMCKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQSK
Sbjct: 3 DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHG+VTNWDDMEKIWHHTFYNELRVAP+EHP+LLTEAPLNPK NREKMTQ
Sbjct: 63 RGILTLKYPIEHGVVTNWDDMEKIWHHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFE FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGY+FTTTAEREIVRD+KEKLCYVALDFEQEM +AA+SSSLE+SYE
Sbjct: 183 GRDLTDYLMKILTERGYNFTTTAEREIVRDVKEKLCYVALDFEQEMGSAAASSSLERSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVIT+GNERFRCPE++FQPSFLG+ES GIHETTFNSIMKCDVDIRKDLYAN VLSG
Sbjct: 243 LPDGQVITLGNERFRCPESIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDLYANIVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
G+TMYPGIADRMQKEI LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GSTMYPGIADRMQKEIMTLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GP IVHRKCF
Sbjct: 363 YDEAGPPIVHRKCF 376
>ref|NP_001003349.1| beta-actin-like [Canis lupus familiaris].
Length = 375
Score = 705 bits (1819), Expect = 0.0
Identities = 351/375 (93%), Positives = 357/375 (95%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M++EIAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV MGQKDSYVGDEAQS
Sbjct: 1 MDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVRMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE PVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEAPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE+ ASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEEALLRRPGLRAGDGHGASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCP+ALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPKALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAP+ MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPARMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|XP_536888.2| PREDICTED: similar to cytoplasmic beta-actin isoform 1 [Canis
familiaris].
Length = 361
Score = 700 bits (1807), Expect = 0.0
Identities = 352/375 (93%), Positives = 356/375 (94%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M+++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQ F P GMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQ-----------SSFCFLP---GMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 286
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 287 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 346
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 347 EYDESGPSIVHRKCF 361
>ref|XP_536230.2| PREDICTED: similar to cytoplasmic beta-actin [Canis familiaris].
Length = 389
Score = 684 bits (1766), Expect = 0.0
Identities = 339/343 (98%), Positives = 339/343 (98%)
Frame = +2
Query: 194 SIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN 373
SIVGRPRH GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN
Sbjct: 47 SIVGRPRHPGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN 106
Query: 374 ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 553
EL VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV
Sbjct: 107 ELGVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 166
Query: 554 MDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDI 733
MDS DGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT AEREIVRDI
Sbjct: 167 MDSSDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTIAEREIVRDI 226
Query: 734 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC 913
KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC
Sbjct: 227 KEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC 286
Query: 914 GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 1093
GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP
Sbjct: 287 GIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 346
Query: 1094 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 1222
PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 347 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 389
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 67,902,672
Number of extensions: 1804896
Number of successful extensions: 7222
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 7121
Number of HSP's successfully gapped: 59
Length of query: 635
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 526
Effective length of database: 15,240,880
Effective search space: 8016702880
Effective search space used: 8016702880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000239
(1907 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186883.1| actin, cytoplasmic 2 [Homo sapiens]. 758 0.0
Alignment gi|NP_001605.1| actin, cytoplasmic 2 [Homo sapiens]. 758 0.0
Alignment gi|NP_001092.1| actin, cytoplasmic 1 [Homo sapiens]. 754 0.0
Alignment gi|NP_001604.1| actin, aortic smooth muscle [Homo sapiens]. 724 0.0
Alignment gi|NP_001135417.1| actin, aortic smooth muscle [Homo sapiens]. 724 0.0
Alignment gi|NP_001606.1| actin, gamma-enteric smooth muscle isoform 1 pr... 724 0.0
Alignment gi|NP_005150.1| actin, alpha cardiac muscle 1 proprotein [Homo ... 723 0.0
Alignment gi|NP_001091.1| actin, alpha skeletal muscle [Homo sapiens]. 721 0.0
Alignment gi|NP_001017992.1| beta-actin-like protein 2 [Homo sapiens]. 710 0.0
Alignment gi|NP_001077007.1| POTE ankyrin domain family member E [Homo sa... 699 0.0
>ref|NP_001186883.1| actin, cytoplasmic 2 [Homo sapiens].
Length = 375
Score = 758 bits (1957), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_001605.1| actin, cytoplasmic 2 [Homo sapiens].
Length = 375
Score = 758 bits (1957), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_001092.1| actin, cytoplasmic 1 [Homo sapiens].
Length = 375
Score = 754 bits (1947), Expect = 0.0
Identities = 371/375 (98%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M+++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_001604.1| actin, aortic smooth muscle [Homo sapiens].
Length = 377
Score = 724 bits (1870), Expect = 0.0
Identities = 353/374 (94%), Positives = 363/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EE+ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001135417.1| actin, aortic smooth muscle [Homo sapiens].
Length = 377
Score = 724 bits (1870), Expect = 0.0
Identities = 353/374 (94%), Positives = 363/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EE+ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001606.1| actin, gamma-enteric smooth muscle isoform 1 precursor [Homo
sapiens].
Length = 376
Score = 724 bits (1868), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 243 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK E
Sbjct: 303 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 363 YDEAGPSIVHRKCF 376
>ref|NP_005150.1| actin, alpha cardiac muscle 1 proprotein [Homo sapiens].
Length = 377
Score = 723 bits (1865), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 DEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001091.1| actin, alpha skeletal muscle [Homo sapiens].
Length = 377
Score = 721 bits (1860), Expect = 0.0
Identities = 351/374 (93%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
E+E ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN V+SG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI+KQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001017992.1| beta-actin-like protein 2 [Homo sapiens].
Length = 376
Score = 710 bits (1832), Expect = 0.0
Identities = 342/374 (91%), Positives = 361/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+ E++ALV+DNGSGMCKAGF GDDAPRAVFPS++GRPRHQGVMVGMGQKD YVGDEAQSK
Sbjct: 3 DNELSALVVDNGSGMCKAGFGGDDAPRAVFPSMIGRPRHQGVMVGMGQKDCYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RG+LTLKYPIEHG+VTNWDDMEKIW+HTFYNELRVAP+EHP+LLTEAPLNPK NREKMTQ
Sbjct: 63 RGVLTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFE FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTH VPIYEGYALPHAILRLDLA
Sbjct: 123 IMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHIVPIYEGYALPHAILRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGY+FTTTAEREIVRD+KEKLCYVALDFEQEM AA+SSS E+SYE
Sbjct: 183 GRDLTDYLMKILTERGYNFTTTAEREIVRDVKEKLCYVALDFEQEMVRAAASSSPERSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPEA+FQPSFLG+ES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 243 LPDGQVITIGNERFRCPEAIFQPSFLGIESSGIHETTFNSIMKCDVDIRKDLYANTVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
G+TMYPGIADRMQKEI LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GSTMYPGIADRMQKEIITLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GP IVHRKCF
Sbjct: 363 YDEAGPPIVHRKCF 376
>ref|NP_001077007.1| POTE ankyrin domain family member E [Homo sapiens].
Length = 1075
Score = 699 bits (1805), Expect = 0.0
Identities = 343/377 (90%), Positives = 357/377 (94%)
Frame = +2
Query: 92 IAMEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 271
+ M+++ A LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPR QG+M GM QK+SYVG EA
Sbjct: 699 LTMDDDTAVLVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRQQGMMGGMHQKESYVGKEA 758
Query: 272 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 451
QSKRGILTLKYP+EHGI+TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREK
Sbjct: 759 QSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREK 818
Query: 452 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRL 631
MTQIMFETFNTPAMYVAIQAV SLY SGRTTGIVMDSGDGVTHTVPIYEG ALPHA LRL
Sbjct: 819 MTQIMFETFNTPAMYVAIQAVPSLYTSGRTTGIVMDSGDGVTHTVPIYEGNALPHATLRL 878
Query: 632 DLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 811
DLAGR+L DYLMKILTERGY FTT AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK
Sbjct: 879 DLAGRELPDYLMKILTERGYRFTTMAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEK 938
Query: 812 SYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTV 991
SYELPDGQVITIGNERFRCPEALFQP FLGMESCGIHETTFNSIMK DVDIRKDLY NTV
Sbjct: 939 SYELPDGQVITIGNERFRCPEALFQPCFLGMESCGIHETTFNSIMKSDVDIRKDLYTNTV 998
Query: 992 LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 1171
LSGGTTMYPG+A RMQKEI ALAPS MKI+IIAPP+RKYSVW+GGSILASLSTFQQMWIS
Sbjct: 999 LSGGTTMYPGMAHRMQKEIAALAPSMMKIRIIAPPKRKYSVWVGGSILASLSTFQQMWIS 1058
Query: 1172 KQEYDESGPSIVHRKCF 1222
KQEYDESGPSIVHRKCF
Sbjct: 1059 KQEYDESGPSIVHRKCF 1075
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,416,388
Number of extensions: 1765744
Number of successful extensions: 6938
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 6838
Number of HSP's successfully gapped: 40
Length of query: 635
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 526
Effective length of database: 14,704,088
Effective search space: 7734350288
Effective search space used: 7734350288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000239
(1907 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033739.1| actin, cytoplasmic 2 [Mus musculus]. 758 0.0
Alignment gi|NP_031419.1| actin, cytoplasmic 1 [Mus musculus]. 754 0.0
Alignment gi|XP_003084637.1| PREDICTED: actin, cytoplasmic 2-like [Mus mu... 740 0.0
Alignment gi|NP_031418.1| actin, aortic smooth muscle [Mus musculus]. 724 0.0
Alignment gi|NP_033740.2| actin, gamma-enteric smooth muscle [Mus musculu... 724 0.0
Alignment gi|NP_033738.1| actin, alpha cardiac muscle 1 [Mus musculus]. 723 0.0
Alignment gi|NP_033736.1| actin, alpha skeletal muscle [Mus musculus]. 721 0.0
Alignment gi|NP_780706.1| beta-actin-like protein 2 [Mus musculus]. 717 0.0
Alignment gi|NP_666219.1| beta-centractin [Mus musculus]. 430 e-120
Alignment gi|NP_058556.1| alpha-centractin [Mus musculus]. 425 e-119
>ref|NP_033739.1| actin, cytoplasmic 2 [Mus musculus].
Length = 375
Score = 758 bits (1957), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_031419.1| actin, cytoplasmic 1 [Mus musculus].
Length = 375
Score = 754 bits (1947), Expect = 0.0
Identities = 371/375 (98%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M+++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|XP_003084637.1| PREDICTED: actin, cytoplasmic 2-like [Mus musculus].
Length = 389
Score = 740 bits (1911), Expect = 0.0
Identities = 374/391 (95%), Positives = 376/391 (96%), Gaps = 2/391 (0%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDE--SGPSIVHRKCF*TDCEQMRSICCMS 1264
EYDE + PS T EQ+ ICCMS
Sbjct: 361 EYDEXQAPPSSTANASRWT--EQVPGICCMS 389
>ref|NP_031418.1| actin, aortic smooth muscle [Mus musculus].
Length = 377
Score = 724 bits (1870), Expect = 0.0
Identities = 353/374 (94%), Positives = 363/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EE+ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_033740.2| actin, gamma-enteric smooth muscle [Mus musculus].
Length = 376
Score = 724 bits (1868), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EEE ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 3 EEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 62
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 63 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 122
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 123 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 182
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 242
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 243 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 302
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK E
Sbjct: 303 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPE 362
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 363 YDEAGPSIVHRKCF 376
>ref|NP_033738.1| actin, alpha cardiac muscle 1 [Mus musculus].
Length = 377
Score = 723 bits (1865), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 DEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_033736.1| actin, alpha skeletal muscle [Mus musculus].
Length = 377
Score = 721 bits (1860), Expect = 0.0
Identities = 351/374 (93%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
E+E ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN V+SG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI+KQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_780706.1| beta-actin-like protein 2 [Mus musculus].
Length = 376
Score = 717 bits (1850), Expect = 0.0
Identities = 346/375 (92%), Positives = 365/375 (97%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
+++E+ ALV+DNGSGMCKAGF GDDAPRAVFPS+VGRPRHQGVMVGMGQKD YVGDEAQS
Sbjct: 2 VDDELTALVVDNGSGMCKAGFGGDDAPRAVFPSMVGRPRHQGVMVGMGQKDCYVGDEAQS 61
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHG+VTNWDDMEKIW+HTFYNELRVAP+EHP+LLTEAPLNPK NREKMT
Sbjct: 62 KRGILTLKYPIEHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMT 121
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFE FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 122 QIMFEAFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGY+FTTTAEREIVRD+KEKLCYVALDFEQEM TAA+SSSLE+SY
Sbjct: 182 AGRDLTDYLMKILTERGYNFTTTAEREIVRDVKEKLCYVALDFEQEMVTAAASSSLERSY 241
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEA+FQPSFLG+ES GIHETTFNSIMKCDVDIRKDL+ANTVLS
Sbjct: 242 ELPDGQVITIGNERFRCPEAIFQPSFLGIESRGIHETTFNSIMKCDVDIRKDLFANTVLS 301
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GG+TMYPGIADRMQKEI LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 302 GGSTMYPGIADRMQKEIVTLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 1178 EYDESGPSIVHRKCF 1222
EYDE+GP IVHRKCF
Sbjct: 362 EYDEAGPPIVHRKCF 376
>ref|NP_666219.1| beta-centractin [Mus musculus].
Length = 376
Score = 430 bits (1105), Expect = e-120
Identities = 200/369 (54%), Positives = 276/369 (74%), Gaps = 1/369 (0%)
Frame = +2
Query: 119 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+VIDNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+LT+
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLTI 71
Query: 299 KYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 475
+YP+EHG+V +W+DME+IW + + ++L+ EEHPVLLTEAPLNP NREK ++ FET
Sbjct: 72 RYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFET 131
Query: 476 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 655
FN PA+++++QAVLSLYA+GRTTG+V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVS 191
Query: 656 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQ 835
YL +L + G F T+AE E+VR IKE+ CY++++ +++ A + Y LPDG
Sbjct: 192 RYLRLLLRKEGADFHTSAEFEVVRTIKERACYLSINPQKDEALETE----KVQYTLPDGS 247
Query: 836 VITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMY 1015
+ +G RFR PE LFQP +G ES G+HE +I K D+D+R+ L++N VLSGG+T++
Sbjct: 248 TLDVGPARFRAPELLFQPDLVGDESEGLHEVLAFAIHKSDMDLRRTLFSNIVLSGGSTLF 307
Query: 1016 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 1195
G DR+ E+ LAP +KIKI AP ER YS WIGGSILASL TF++MW+SK+EY+E G
Sbjct: 308 KGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDG 367
Query: 1196 PSIVHRKCF 1222
+HRK F
Sbjct: 368 SRAIHRKTF 376
>ref|NP_058556.1| alpha-centractin [Mus musculus].
Length = 376
Score = 425 bits (1092), Expect = e-119
Identities = 197/369 (53%), Positives = 276/369 (74%), Gaps = 1/369 (0%)
Frame = +2
Query: 119 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+VIDNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+L++
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLSI 71
Query: 299 KYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 475
+YP+EHGIV +W+DME+IW + + ++L+ EEHPVLLTEAPLNP+ NRE+ ++ FET
Sbjct: 72 RYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFET 131
Query: 476 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 655
FN PA+++++QAVLSLYA+GRTTG+V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVS 191
Query: 656 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQ 835
+L L + GY F +++E EIV+ IKE+ CY++++ +++ + Y LPDG
Sbjct: 192 RFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKA----QYYLPDGS 247
Query: 836 VITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMY 1015
I IG RFR PE LF+P +G ES GIHE +I K D+D+R+ L++N VLSGG+T++
Sbjct: 248 TIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVLSGGSTLF 307
Query: 1016 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 1195
G DR+ E+ LAP +KI+I AP ER YS WIGGSILASL TF++MW+SK+EY+E G
Sbjct: 308 KGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDG 367
Query: 1196 PSIVHRKCF 1222
+HRK F
Sbjct: 368 ARSIHRKTF 376
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,205,828
Number of extensions: 1474508
Number of successful extensions: 5689
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 5591
Number of HSP's successfully gapped: 31
Length of query: 635
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 527
Effective length of database: 12,373,671
Effective search space: 6520924617
Effective search space used: 6520924617
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000239
(1907 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357976.1| PREDICTED: actin, cytoplasmic 2 [Sus scrofa]. 758 0.0
Alignment gi|XP_003124328.1| PREDICTED: actin, cytoplasmic 1 [Sus scrofa]. 754 0.0
Alignment gi|NP_001158122.1| actin, aortic smooth muscle [Sus scrofa]. 724 0.0
Alignment gi|NP_001163988.1| actin, alpha cardiac muscle 1 [Sus scrofa]. 723 0.0
Alignment gi|NP_001161267.1| actin, alpha skeletal muscle [Sus scrofa]. 721 0.0
Alignment gi|XP_003121682.1| PREDICTED: actin, alpha cardiac muscle 1-lik... 721 0.0
Alignment gi|XP_003353462.1| PREDICTED: actin, alpha cardiac muscle 1-lik... 612 e-175
Alignment gi|XP_003354819.1| PREDICTED: actin, gamma-enteric smooth muscl... 472 e-133
Alignment gi|XP_003125076.2| PREDICTED: actin, gamma-enteric smooth muscl... 433 e-121
Alignment gi|XP_001928912.1| PREDICTED: alpha-centractin [Sus scrofa]. 425 e-119
>ref|XP_003357976.1| PREDICTED: actin, cytoplasmic 2 [Sus scrofa].
Length = 375
Score = 758 bits (1957), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|XP_003124328.1| PREDICTED: actin, cytoplasmic 1 [Sus scrofa].
Length = 375
Score = 754 bits (1947), Expect = 0.0
Identities = 371/375 (98%), Positives = 375/375 (100%)
Frame = +2
Query: 98 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 277
M+++IAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
Sbjct: 1 MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 60
Query: 278 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 458 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 637
QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 638 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 817
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 818 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 997
ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLS 300
Query: 998 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 1177
GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 1178 EYDESGPSIVHRKCF 1222
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>ref|NP_001158122.1| actin, aortic smooth muscle [Sus scrofa].
Length = 377
Score = 724 bits (1870), Expect = 0.0
Identities = 353/374 (94%), Positives = 363/374 (97%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
EE+ ALV DNGSG+CKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EEDSTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001163988.1| actin, alpha cardiac muscle 1 [Sus scrofa].
Length = 377
Score = 723 bits (1865), Expect = 0.0
Identities = 353/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 DEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|NP_001161267.1| actin, alpha skeletal muscle [Sus scrofa].
Length = 377
Score = 721 bits (1860), Expect = 0.0
Identities = 351/374 (93%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
E+E ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN V+SG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI+KQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|XP_003121682.1| PREDICTED: actin, alpha cardiac muscle 1-like isoform 1 [Sus scrofa].
Length = 377
Score = 721 bits (1860), Expect = 0.0
Identities = 352/374 (94%), Positives = 362/374 (96%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 4 DEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 63
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 64 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 123
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 124 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 183
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLC+VALDFE EMATAASSSSLEKSYE
Sbjct: 184 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCHVALDFENEMATAASSSSLEKSYE 243
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 244 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 303
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 304 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 363
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 364 YDEAGPSIVHRKCF 377
>ref|XP_003353462.1| PREDICTED: actin, alpha cardiac muscle 1-like isoform 2 [Sus scrofa].
Length = 334
Score = 612 bits (1578), Expect = e-175
Identities = 310/374 (82%), Positives = 319/374 (85%)
Frame = +2
Query: 101 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 4 DEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQ-------------------- 43
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
IWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQ
Sbjct: 44 -----------------------IWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 80
Query: 461 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 640
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLA
Sbjct: 81 IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA 140
Query: 641 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 820
GRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLC+VALDFE EMATAASSSSLEKSYE
Sbjct: 141 GRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCHVALDFENEMATAASSSSLEKSYE 200
Query: 821 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 1000
LPDGQVITIGNERFRCPE LFQPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 201 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 260
Query: 1001 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 1180
GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 261 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 320
Query: 1181 YDESGPSIVHRKCF 1222
YDE+GPSIVHRKCF
Sbjct: 321 YDEAGPSIVHRKCF 334
>ref|XP_003354819.1| PREDICTED: actin, gamma-enteric smooth muscle-like [Sus scrofa].
Length = 313
Score = 472 bits (1215), Expect = e-133
Identities = 231/247 (93%), Positives = 239/247 (96%)
Frame = +2
Query: 344 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 523
E+IWHH+FYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSL
Sbjct: 36 EQIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL 95
Query: 524 YASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 703
YASGRTTGIV+DSGDGVTH VPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSF T
Sbjct: 96 YASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVT 155
Query: 704 TAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALF 883
TAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYELPDGQVITIGNERFRCPE LF
Sbjct: 156 TAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLF 215
Query: 884 QPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP 1063
QPSF+GMES GIHETT+NSIMKCD+DIRKDLYAN VLSGGTTMYPGIADRMQKEITALAP
Sbjct: 216 QPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAP 275
Query: 1064 STMKIKI 1084
STMKIK+
Sbjct: 276 STMKIKV 282
>ref|XP_003125076.2| PREDICTED: actin, gamma-enteric smooth muscle-like [Sus scrofa].
Length = 268
Score = 433 bits (1113), Expect = e-121
Identities = 212/225 (94%), Positives = 218/225 (96%)
Frame = +2
Query: 548 IVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 727
IV+DSGDGVTH VPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAEREIVR
Sbjct: 44 IVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVR 103
Query: 728 DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME 907
DIKEKLCYVALDFE EMATAASSSSLEKSYELPDGQVITIGNERFRCPE LFQPSF+GME
Sbjct: 104 DIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGME 163
Query: 908 SCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 1087
S GIHETT+NSIMKCD+DIRKDLYAN VLSGGTTMYPGIADRMQKEITALAPSTMKIKII
Sbjct: 164 SAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKII 223
Query: 1088 APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 1222
APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct: 224 APPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF 268
>ref|XP_001928912.1| PREDICTED: alpha-centractin [Sus scrofa].
Length = 376
Score = 425 bits (1092), Expect = e-119
Identities = 197/369 (53%), Positives = 276/369 (74%), Gaps = 1/369 (0%)
Frame = +2
Query: 119 LVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+VIDNGSG+ KAGFAGD P+ FP+ VGRP+H VM G + D ++G +A+ RG+L++
Sbjct: 12 VVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHVRVMAGALEGDIFIGPKAEEHRGLLSI 71
Query: 299 KYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 475
+YP+EHGIV +W+DME+IW + + ++L+ EEHPVLLTEAPLNP+ NRE+ ++ FET
Sbjct: 72 RYPMEHGIVKDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPRKNRERAAEVFFET 131
Query: 476 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLT 655
FN PA+++++QAVLSLYA+GRTTG+V+DSGDGVTH VPIYEG+A+PH+I+R+D+AGRD++
Sbjct: 132 FNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRIDIAGRDVS 191
Query: 656 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQ 835
+L L + GY F +++E EIV+ IKE+ CY++++ +++ + Y LPDG
Sbjct: 192 RFLRLYLRKEGYDFHSSSEFEIVKAIKERACYLSINPQKDETLETEKA----QYYLPDGS 247
Query: 836 VITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMY 1015
I IG RFR PE LF+P +G ES GIHE +I K D+D+R+ L++N VLSGG+T++
Sbjct: 248 TIEIGPSRFRAPELLFRPDLIGEESEGIHEVLVFAIQKSDMDLRRTLFSNIVLSGGSTLF 307
Query: 1016 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 1195
G DR+ E+ LAP +KI+I AP ER YS WIGGSILASL TF++MW+SK+EY+E G
Sbjct: 308 KGFGDRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDG 367
Query: 1196 PSIVHRKCF 1222
+HRK F
Sbjct: 368 ARSIHRKTF 376
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,729,952
Number of extensions: 1114911
Number of successful extensions: 4580
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 4517
Number of HSP's successfully gapped: 32
Length of query: 635
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 530
Effective length of database: 8,729,747
Effective search space: 4626765910
Effective search space used: 4626765910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000239
(1907 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1405 0.0
Sscrofa_Chr13 955 0.0
Sscrofa_Chr03 775 0.0
Sscrofa_Chr16 565 e-158
Sscrofa_Chr01 486 e-134
Sscrofa_Chr14 416 e-113
Sscrofa_Chr10 238 9e-60
gb|GL894474.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 80 5e-12
>Sscrofa_Chr12
|| Length = 63588571
Score = 1405 bits (709), Expect = 0.0
Identities = 800/829 (96%), Gaps = 1/829 (0%)
Strand = Plus / Plus
Query: 1080 agatcatcgcgcctcccgagcgcaagtactcggtgtggatcgggggctccatcctggcct 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165151 agatcatcgcgcctcccgagcgcaagtactcggtgtggatcgggggctccatcctggcct 1165210
Query: 1140 cgctgtccaccttccagcagatgtggatcagcaagcaggagtacgacgagtcgggcccgt 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165211 cgctgtccaccttccagcagatgtggatcagcaagcaggagtacgacgagtcgggcccgt 1165270
Query: 1200 ccatcgtccaccgcaaatgcttctagacggactgcgagcagatgcgtagcatttgctgca 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165271 ccatcgtccaccgcaaatgcttctagacggactgcgagcagatgcgtagcatttgctgca 1165330
Query: 1260 tgagctaatccagaaataaagtttgccctggcaaatgtacacacctcatgccagcctcct 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165331 tgagctaatccagaaataaagtttgccctggcaaatgtacacacctcatgccagcctcct 1165390
Query: 1320 gaaactggaataagcctttgaaaagaaatttgtccttgaagcttgtatctggtatcagca 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165391 gaaactggaataagcctttgaaaagaaatttgtccttgaagcttgtatctggtatcagca 1165450
Query: 1380 ctggattgtagaccttgttgctgattttgaccttgtactcgagttaactcttcccttggt 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165451 ctggattgtagaccttgttgctgattttgaccttgtactcgagttaactcttcccttggt 1165510
Query: 1440 ctctgtttaataccctgtgcatatctttgatttaaacccctagttacacacacgcggctc 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165511 ctctgtttaataccctgtgcatatctttgatttaaacccctagttacacacacgcggctc 1165570
Query: 1500 tgtcacctcgtggctgaggtgagaacctgtttatcgtggaagagaaatccgttggctggt 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165571 tgtcacctcgtggctgaggtgagaacctgtttatcgtggaagagaaatccgttggctggt 1165630
Query: 1560 tgagaatctgagacggagtctctccgatctgtgcagggtattcatgtgtccgagctccta 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165631 tgagaatctgagacggagtctctccgatctgtgcagggtattcatgtgtccgagctccta 1165690
Query: 1620 ttccaggatttctctcgaggctgggcagagtcctgaaccagttgtcatttctgtcttgcc 1679
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1165691 ttccaggatttctctcgaggctggcaagagtcctgaaccagttgtcatttctgtcttgcc 1165750
Query: 1680 ggtctgacggggttgggaaggtccgagccttgagacccactgtcctttcttccccgatgt 1739
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1165751 ggtctgacggggttgggaaggtccgagccttaggacccactgtcctttcttccccgatgt 1165810
Query: 1740 ttgcccgacaaaaaaccgaggagtgttaacttgctctgagttggaagcgattgcattcac 1799
||||||| || ||||||| || ||||||||||| ||||||||||||| ||||||||||
Sbjct: 1165811 ttgcccgccagaaaaccgtgggttgttaacttgccttgagttggaagcgtttgcattcac 1165870
Query: 1800 agctgtaaattaaatcatccttgt-agtcaggtacggttattgtacgccattctcagttc 1858
| ||||||||| | |||||||| | | | | ||| |||| |||||||| ||||||| |||
Sbjct: 1165871 acctgtaaatttattcatccttttaatttatgtaaggtttttgtacgcaattctcaattc 1165930
Query: 1859 cataatagacgaccaccgattttggttttctactgtcacgtgagaacgt 1907
| ||| ||| ||| || ||||||||||||||||||||||||||||||||
Sbjct: 1165931 cttaagagatgacaacagattttggttttctactgtcacgtgagaacgt 1165979
Score = 870 bits (439), Expect = 0.0
Identities = 442/443 (99%)
Strand = Plus / Plus
Query: 458 cagatcatgttcgagaccttcaacacgccggccatgtacgtggccatccaggccgtgctg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164343 cagatcatgttcgagaccttcaacacgccggccatgtacgtggccatccaggccgtgctg 1164402
Query: 518 tccctgtacgcctctggccgcaccactggcattgtcatggactctggggatggggtcacc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164403 tccctgtacgcctctggccgcaccactggcattgtcatggactctggggatggggtcacc 1164462
Query: 578 cacacggtgcccatctacgaggggtacgccctgccccacgccatcctgcgtctggacctg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164463 cacacggtgcccatctacgaggggtacgccctgccccacgccatcctgcgtctggacctg 1164522
Query: 638 gctggccgggacctgaccgactacctcatgaagatcctcacggagcggggctacagcttc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164523 gctggccgggacctgaccgactacctcatgaagatcctcacggagcggggctacagcttc 1164582
Query: 698 accaccacggccgagcgggagatcgtgcgggacatcaaggagaagctctgctacgtcgcc 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164583 accaccacggccgagcgggagatcgtgcgggacatcaaggagaagctctgctacgtcgcc 1164642
Query: 758 ctggacttcgagcaggagatggccaccgccgcgtcctcctcctccctggagaagagctac 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164643 ctggacttcgagcaggagatggccaccgccgcgtcctcctcctccctggagaagagctac 1164702
Query: 818 gagctgcccgacggccaggtcatcaccatcggcaacgagcgcttccggtgtccagaggcg 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164703 gagctgcccgacggccaggtcatcaccatcggcaacgagcgcttccggtgtccagaggcg 1164762
Query: 878 ctcttccagccctccttcctggg 900
|||||||||||||||||| ||||
Sbjct: 1164763 ctcttccagccctccttcttggg 1164785
Score = 720 bits (363), Expect = 0.0
Identities = 363/363 (100%)
Strand = Plus / Plus
Query: 98 atggaagaagagatcgccgcgctggtcatcgacaatggctccggcatgtgcaaagctggc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163693 atggaagaagagatcgccgcgctggtcatcgacaatggctccggcatgtgcaaagctggc 1163752
Query: 158 tttgctggggatgacgccccccgggccgtgttcccgtccatcgtcgggcgtccccgacac 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163753 tttgctggggatgacgccccccgggccgtgttcccgtccatcgtcgggcgtccccgacac 1163812
Query: 218 cagggtgtcatggtgggcatgggccagaaggacagctacgtgggcgacgaggctcagagc 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163813 cagggtgtcatggtgggcatgggccagaaggacagctacgtgggcgacgaggctcagagc 1163872
Query: 278 aagcggggcatcctgaccctcaagtaccccatcgaacacggcatcgtcaccaactgggac 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163873 aagcggggcatcctgaccctcaagtaccccatcgaacacggcatcgtcaccaactgggac 1163932
Query: 338 gacatggagaagatctggcatcacaccttctacaacgagctgcgcgtggcccccgaggag 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163933 gacatggagaagatctggcatcacaccttctacaacgagctgcgcgtggcccccgaggag 1163992
Query: 398 caccccgtgctgctcacggaggcccccctgaaccccaaggccaaccgtgagaagatgact 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163993 caccccgtgctgctcacggaggcccccctgaaccccaaggccaaccgtgagaagatgact 1164052
Query: 458 cag 460
|||
Sbjct: 1164053 cag 1164055
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Plus
Query: 899 ggcatggagtcctgcggcatccacgagaccaccttcaactcgatcatgaagtgcgacgtg 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164879 ggcatggagtcctgcggcatccacgagaccaccttcaactcgatcatgaagtgcgacgtg 1164938
Query: 959 gacatcaggaaggacctctacgccaacacggtgctgtctggcgggaccaccatgtacccc 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164939 gacatcaggaaggacctctacgccaacacggtgctgtctggcgggaccaccatgtacccc 1164998
Query: 1019 ggcatcgccgacaggatgcagaaggagatcacggccctggcgcccagcaccatgaagatc 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164999 ggcatcgccgacaggatgcagaaggagatcacggccctggcgcccagcaccatgaagatc 1165058
Query: 1079 aag 1081
|||
Sbjct: 1165059 aag 1165061
>Sscrofa_Chr13
|| Length = 218635234
Score = 955 bits (482), Expect = 0.0
Identities = 1351/1632 (82%), Gaps = 39/1632 (2%)
Strand = Plus / Minus
Query: 123 tcatcgacaatggctccggcatgtgcaaagctggctttgctggggatgacgccccccggg 182
||||||||| || ||| ||||||||||| |||||||||||||||| ||||||||| |||
Sbjct: 154029254 tcatcgacagtgactctggcatgtgcaacgctggctttgctgggg-tgacgcccctgggg 154029196
Query: 183 ccgtgttcccgtccatcgtcgggcgtccccgacaccagggtgtcatggtgggcatgggcc 242
| |||||||| |||||| |||| ||||||| ||||||| |||||| |||||||| |
Sbjct: 154029195 ctgtgttcccatccatcactgggcatccccgaaaccagggcatcatgg--ggcatggggc 154029138
Query: 243 agaaggacagctacgtgggcgacgaggctcagagcaagcggggcatcctgaccctcaagt 302
||||||||||||| ||| ||| |||| |||| ||| | |||||||||||||||||||
Sbjct: 154029137 agaaggacagctatgtgcatgacaaggcccagaacaatcatggcatcctgaccctcaagt 154029078
Query: 303 accccatcgaacacggcatcgtcaccaactgggacgacatggagaagatctggcatcaca 362
|| ||| || | | |||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 154029077 actccactgagcccagcattgtcaccaactgggatgacatggagaagatctggcaccaca 154029018
Query: 363 ccttctacaacgagctgcgcgtggcccccgaggagcaccccgtgctgctcacggaggccc 422
||| |||| |||||||| |||||||| |||||||||| ||||| || ||||||
Sbjct: 154029017 cct---acaatgagctgcgtgtggcccctgaggagcaccttgtgctaacgacaaaggccc 154028961
Query: 423 ccctgaaccccaaggccaaccgtgagaagatgactcagatcatgttcgagaccttcaaca 482
|| ||||| |||||| |||| |||||| ||| |||||| ||||||| |||| |||||||
Sbjct: 154028960 cc-tgaactccaaggacaactgtgagacgataactcagttcatgttggagattttcaaca 154028902
Query: 483 cgccggccatgtacgtggccatccaggccgt-gctgtccctgtacgcctctggccgcacc 541
| || ||||| | ||||||||||||||| | ||||||||||||| |||||||| ||||
Sbjct: 154028901 ctccagccatatgtgtggccatccaggccattgctgtccctgtacacctctggctgcac- 154028843
Query: 542 actggcattgtcatggactctggggatggggtcacccacacggtgcccatctacgagggg 601
| ||| |||||||||||||||||| |||| ||||||| |||||||||||| || |||
Sbjct: 154028842 --ttgcactgtcatggactctggggacagggttacccacatggtgcccatctatgaaggg 154028785
Query: 602 tacgccctgccccacgccatcctgcgtctggacctggctggccgggacctgaccgactac 661
|| | |||| | || || ||||||| |||||||||||||||||| | ||||||| |||||
Sbjct: 154028784 tatggcctgtctcaggctatcctgcatctggacctggctggccgagtcctgacccactac 154028725
Query: 662 ctcatgaagatcctcacggagcggggctacagcttcaccaccacggccgagcgggagatc 721
|||| |||||||||| ||| ||||||| || ||||||||||| | ||| ||||||||
Sbjct: 154028724 ttcataaagatcctcatggaccggggctgaaggttcaccaccacagaggagtgggagatc 154028665
Query: 722 gtgcgggacatcaaggagaagctctgctacgtcgccctggacttcgagcaggagatggcc 781
|| | |||||||||||||| ||||||| ||| ||||||||||| |||||||||| |||
Sbjct: 154028664 atgggtgacatcaaggagaaactctgctgtgtcaccctggacttcaagcaggagatagcc 154028605
Query: 782 accgccgcgtcctcctcctccctggagaagagctacgagctgcccgacggccaggtcatc 841
||| || ||||||||||||| ||||||| |||||| ||| ||||| | |||||| |||
Sbjct: 154028604 accaccatgtcctcctcctccatggagaaaagctacaggcttcccgaagaccaggtgatc 154028545
Query: 842 accatcggcaacgagcgcttccggtgtccagaggcgctcttccagccctccttcctgggc 901
||||| ||||| || | ||| |||||||||| |||||||||| |||| ||||||||
Sbjct: 154028544 accataagcaacaagtggttcaggtgtccagacatgctcttccagtcctctttcctgggt 154028485
Query: 902 atggagtcctgcggcatccacgagaccaccttcaactcgatcatgaagtgcgacgtggac 961
||||||| ||| ||||||||| ||||||||||||||| ||||||||||| ||| |||
Sbjct: 154028484 atggagttctgtggcatccacaagaccaccttcaactgcatcatgaagtgtgacagcgac 154028425
Query: 962 atcaggaaggacctctacgccaacacggtgctgtctggcgggaccaccatgtaccccggc 1021
|||| ||||| ||| || |||||||| ||||||||||| ||||||||||||||||| |||
Sbjct: 154028424 atcaagaagggcctgtatgccaacacagtgctgtctggtgggaccaccatgtaccctggc 154028365
Query: 1022 atcgccgacaggatgcagaaggagatcacggccctggcgcccagcaccatgaagatcaag 1081
||| || |||||| || |||||||||| || |||| |||| || ||||||||||||
Sbjct: 154028364 atccccaacaggacgc---aggagatcacagctctggtccccaccatgatgaagatcaag 154028308
Query: 1082 atcatcgcgcctcccgagcgcaagtactcggtgtggatcgggggctccatcctggcctcg 1141
||||| || |||||| || ||| |||||| | |||||||||||| |||| |||||||||
Sbjct: 154028307 atcatggctcctccctagtgcatgtactctgcgtggatcgggggttccaccctggcctca 154028248
Query: 1142 ctgtccaccttccagcagatgtggatcagcaagcaggagtacgacgagtcgggcccgtcc 1201
|| || ||||||||||||||| ||||||| ||||||||| ||| | || |||| ||||
Sbjct: 154028247 ctatctgccttccagcagatgt-gatcagccagcaggagtgggacaattcaggccagtcc 154028189
Query: 1202 atcgtccaccgcaaatgcttctagacggactgc-----gagcagatgcgtagcatttgct 1256
||| |||||| ||||| |||||| | ||||||| |||||||||| || || | ||
Sbjct: 154028188 atcatccaccacaaatacttctaaaaggactgcaagctgagcagatgcctaacagtcact 154028129
Query: 1257 gcatgagctaatccagaaata-aagtttgccctggcaaatgtacacacctcatgccagcc 1315
||||| | |||||||||| || || || ||||||||||||||||| |||| ||||| ||
Sbjct: 154028128 gcatgggttaatccagaagtataaattagccctggcaaatgtacataccttgtgccatcc 154028069
Query: 1316 tcctgaaactggaataagcctttgaaaagaaatttgtccttgaagcttgtatctggtatc 1375
|||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 154028068 tcctgaaactagaataagcccttgaaaagaaatttgtccttgaaacttatatctgatatc 154028009
Query: 1376 agcactggattgtag-accttgttgctgattttgaccttgtactcgagttaactcttccc 1434
||||||||||||||| | ||| |||||||||||||||||||| | |||||||||||||
Sbjct: 154028008 agcactggattgtagaatcttattgctgattttgaccttgtatgctagttaactcttcct 154027949
Query: 1435 ttggtctctgtttaataccctgtgcatatctttgatttaaacccctagttacacacacgc 1494
||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct: 154027948 ttggtatgtatttaataccctgtgcatatctttgatttaaacatata------------- 154027902
Query: 1495 ggctctgtcacctcgtggctgaggtgagaacctgtttatcgtggaagagaaatccgttgg 1554
|||||||||||| ||||||||||| ||||| |||||| || |||||| ||| ||||
Sbjct: 154027901 -gctctgtcaccttgtggctgaggtaagaacatgttta---tgacagagaactccattgg 154027846
Query: 1555 ctggttgagaatctgagacggagtctctccgatctgtgcagggtattcatgtgtccgagc 1614
||||||||||||| || || |||||| |||||||||||||||||||| ||| ||| | |
Sbjct: 154027845 ctggttgagaatccgaaactgagtctttccgatctgtgcagggtattaatgcttcccacc 154027786
Query: 1615 tcctattccaggatttctctcgaggctgggcagagtcctgaaccagttgtcatttctgtc 1674
||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||||||
Sbjct: 154027785 tcctattccagtgtttctctggaggctggccagagtcctgaaccaggtgtcatttctgtc 154027726
Query: 1675 ttgccggtctgacggggttgggaaggtccgagccttgagacccactgtcctttcttcccc 1734
||| ||| || ||||||||||||||| || ||| ||||||| ||||||||| |||
Sbjct: 154027725 atgctggttggatggggttgggaaggtctaagtcttagaacccactttcctttcttaccc 154027666
Query: 1735 gatgtttgcccg 1746
|||||| ||||
Sbjct: 154027665 aatgttttcccg 154027654
Score = 95.6 bits (48), Expect = 9e-17
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 1338 tgaaaagaaatttgtccttgaagcttgtatctggtatcagcactggattgtagaccttgt 1397
|||||||||| |||||||||||| || |||||| |||||||||||||||||| | |||||
Sbjct: 6367991 tgaaaagaaacttgtccttgaagtttctatctgatatcagcactggattgtaaaacttgt 6367932
Query: 1398 tgctgattttgacctt 1413
||||| ||||||||||
Sbjct: 6367931 tgctggttttgacctt 6367916
Score = 95.6 bits (48), Expect = 9e-17
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1338 tgaaaagaaatttgtccttgaagcttgtatctggtatcagcactggattgtagaccttgt 1397
|||||||||| |||||||||||| || |||||| |||||||||||||||||| | |||||
Sbjct: 6497644 tgaaaagaaacttgtccttgaagtttctatctgatatcagcactggattgtaaaacttgt 6497703
Query: 1398 tgctgattttgacctt 1413
||||| ||||||||||
Sbjct: 6497704 tgctggttttgacctt 6497719
Score = 77.8 bits (39), Expect = 2e-11
Identities = 201/251 (80%), Gaps = 3/251 (1%)
Strand = Plus / Minus
Query: 1100 cgcaagtactcggtgtggatcgggggctccatcctggcctcgctgtccaccttccagcag 1159
|||||||||| || ||||||| ||| ||||||||||||||| |||||||| |||||||
Sbjct: 6368287 cgcaagtacttggggtggatcaggg-ctccatcctggcctctctgtccactttccagcca 6368229
Query: 1160 atgtggatcagcaagcaggagtacgacgagtcgggcccgtccatcgtccaccgcaaatgc 1219
| |||| || |||||||| ||| ||| |||||| |||| | || |||||| ||||
Sbjct: 6368228 gcggagatcgttaatcaggagtatgacaagttgggcccctccagcctcaaccgcacatgc 6368169
Query: 1220 ttctagacggactgcgagcagatgcgtagcatttgctgcatgagctaatccagaaata-a 1278
||||| || |||||| ||||||||| ||||| ||| || |||| | || || || || |
Sbjct: 6368168 ttctaaactgactgccagcagatgcatagcacttgatgtatgaattcattcaaaagtata 6368109
Query: 1279 agtttgccctggcaaatgtacacacctcatg-ccagcctcctgaaactggaataagcctt 1337
| |||||||||| ||| || ||||||||| | | |||| ||||||| ||||||||| |
Sbjct: 6368108 aatttgccctggaaaaagtgcacacctcaagtgtaacctcatgaaactagaataagccat 6368049
Query: 1338 tgaaaagaaat 1348
|||||||||||
Sbjct: 6368048 tgaaaagaaat 6368038
>Sscrofa_Chr03
|| Length = 144787322
Score = 775 bits (391), Expect = 0.0
Identities = 430/443 (97%)
Strand = Plus / Minus
Query: 458 cagatcatgttcgagaccttcaacacgccggccatgtacgtggccatccaggccgtgctg 517
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 4730915 cagatcatgttcgagaccttcaacaccccagccatgtacgtggccatccaggccgtgctg 4730856
Query: 518 tccctgtacgcctctggccgcaccactggcattgtcatggactctggggatggggtcacc 577
|||||||||||||||||||||||||||||||| || |||||||| || || |||||||||
Sbjct: 4730855 tccctgtacgcctctggccgcaccactggcatcgtgatggactccggagacggggtcacc 4730796
Query: 578 cacacggtgcccatctacgaggggtacgccctgccccacgccatcctgcgtctggacctg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4730795 cacacggtgcccatctacgaggggtacgccctgccccacgccatcctgcgtctggacctg 4730736
Query: 638 gctggccgggacctgaccgactacctcatgaagatcctcacggagcggggctacagcttc 697
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4730735 gctggccgggacctgaccgactacctcatgaagatcctgacggagcggggctacagcttc 4730676
Query: 698 accaccacggccgagcgggagatcgtgcgggacatcaaggagaagctctgctacgtcgcc 757
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4730675 accaccacggccgagcgggagatcgtgcgggacatcaaggagaagctgtgctacgtcgcc 4730616
Query: 758 ctggacttcgagcaggagatggccaccgccgcgtcctcctcctccctggagaagagctac 817
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4730615 ctggacttcgagcaggagatggccactgccgcgtcctcctcctccctggagaagagctac 4730556
Query: 818 gagctgcccgacggccaggtcatcaccatcggcaacgagcgcttccggtgtccagaggcg 877
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct: 4730555 gagctgcccgacggccaggtcatcaccatcggcaacgagcgcttccgctgccccgaggcg 4730496
Query: 878 ctcttccagccctccttcctggg 900
|||||||||||||||||||||||
Sbjct: 4730495 ctcttccagccctccttcctggg 4730473
Score = 363 bits (183), Expect = 2e-97
Identities = 225/239 (94%)
Strand = Plus / Minus
Query: 218 cagggtgtcatggtgggcatgggccagaaggacagctacgtgggcgacgaggctcagagc 277
||||| || |||||||||||||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 4731602 cagggcgtgatggtgggcatgggccagaaggactcctacgtgggggacgaggcccagagc 4731543
Query: 278 aagcggggcatcctgaccctcaagtaccccatcgaacacggcatcgtcaccaactgggac 337
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4731542 aagagaggcatcctgaccctcaagtaccccatcgagcacggcatcgtcaccaactgggac 4731483
Query: 338 gacatggagaagatctggcatcacaccttctacaacgagctgcgcgtggcccccgaggag 397
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 4731482 gacatggagaagatctggcaccacaccttctacaacgagctgcgtgtggcccccgaggag 4731423
Query: 398 caccccgtgctgctcacggaggcccccctgaaccccaaggccaaccgtgagaagatgac 456
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4731422 caccccgtgctgctgaccgaggcccccctgaaccccaaagccaaccgtgagaagatgac 4731364
Score = 268 bits (135), Expect = 1e-68
Identities = 171/183 (93%)
Strand = Plus / Minus
Query: 899 ggcatggagtcctgcggcatccacgagaccaccttcaactcgatcatgaagtgcgacgtg 958
|||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 4730376 ggcatggaatcctgcggcatccacgaaactaccttcaactccatcatgaagtgcgacgtc 4730317
Query: 959 gacatcaggaaggacctctacgccaacacggtgctgtctggcgggaccaccatgtacccc 1018
|||||| | ||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 4730316 gacatccgcaaggacctctacgccaacacggtgctgtcgggtggcaccaccatgtaccca 4730257
Query: 1019 ggcatcgccgacaggatgcagaaggagatcacggccctggcgcccagcaccatgaagatc 1078
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4730256 ggcatcgccgacaggatgcagaaggagatcacggccctggcgcccagcacgatgaagatc 4730197
Query: 1079 aag 1081
|||
Sbjct: 4730196 aag 4730194
Score = 258 bits (130), Expect = 1e-65
Identities = 148/154 (96%)
Strand = Plus / Minus
Query: 1080 agatcatcgcgcctcccgagcgcaagtactcggtgtggatcgggggctccatcctggcct 1139
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 4730065 agatcatcgcgcctccagagcgcaagtactccgtgtggatcggcggctccatcctggcct 4730006
Query: 1140 cgctgtccaccttccagcagatgtggatcagcaagcaggagtacgacgagtcgggcccgt 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 4730005 cgctgtccaccttccagcagatgtggatcagcaagcaggagtacgacgagtccggcccct 4729946
Query: 1200 ccatcgtccaccgcaaatgcttctagacggactg 1233
|||||||||||||||||||||||||| |||||||
Sbjct: 4729945 ccatcgtccaccgcaaatgcttctaggcggactg 4729912
Score = 192 bits (97), Expect = 5e-46
Identities = 157/177 (88%)
Strand = Plus / Minus
Query: 719 atcgtgcgggacatcaaggagaagctctgctacgtcgccctggacttcgagcaggagatg 778
|||||||| ||||||||||||||||| ||||| || ||||||||||| ||| | ||||||
Sbjct: 72256562 atcgtgcgagacatcaaggagaagctgtgctatgtggccctggactttgagaacgagatg 72256503
Query: 779 gccaccgccgcgtcctcctcctccctggagaagagctacgagctgcccgacggccaggtc 838
||||| || || ||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 72256502 gccacggcagcctcctcttcctccctggagaagagctatgagctgccggacggacaggtc 72256443
Query: 839 atcaccatcggcaacgagcgcttccggtgtccagaggcgctcttccagccctccttc 895
|||||||||||||| ||||||||||| || || ||| | ||||||||||||||||||
Sbjct: 72256442 atcaccatcggcaatgagcgcttccgctgcccggagaccctcttccagccctccttc 72256386
Score = 125 bits (63), Expect = 1e-25
Identities = 126/147 (85%)
Strand = Plus / Minus
Query: 545 ggcattgtcatggactctggggatggggtcacccacacggtgcccatctacgaggggtac 604
||||| ||| |||| || |||||||| |||||||||| || || ||||| ||||| |||
Sbjct: 72257787 ggcatcgtcctggattccggggatggcgtcacccacaatgtccctatctatgagggatac 72257728
Query: 605 gccctgccccacgccatcctgcgtctggacctggctggccgggacctgaccgactacctc 664
|| ||||||||||||||| |||| ||||| ||||||||||| ||||| || |||||||||
Sbjct: 72257727 gcactgccccacgccatcatgcgcctggatctggctggccgcgacctcacggactacctc 72257668
Query: 665 atgaagatcctcacggagcggggctac 691
|||||||||||||| ||| | ||||||
Sbjct: 72257667 atgaagatcctcacagagagaggctac 72257641
Score = 123 bits (62), Expect = 4e-25
Identities = 113/130 (86%)
Strand = Plus / Minus
Query: 1097 gagcgcaagtactcggtgtggatcgggggctccatcctggcctcgctgtccaccttccag 1156
||||| ||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||
Sbjct: 72252078 gagcggaagtactcggtctggatcggaggctctatcctggcctctctctccaccttccag 72252019
Query: 1157 cagatgtggatcagcaagcaggagtacgacgagtcgggcccgtccatcgtccaccgcaaa 1216
||||||||||||||||||| ||||| |||||| | || || ||||| |||||| | ||
Sbjct: 72252018 cagatgtggatcagcaagccagagtatgacgaggcagggccttccattgtccacaggaag 72251959
Query: 1217 tgcttctaga 1226
||||||||||
Sbjct: 72251958 tgcttctaga 72251949
Score = 113 bits (57), Expect = 4e-22
Identities = 120/141 (85%)
Strand = Plus / Minus
Query: 941 atcatgaagtgcgacgtggacatcaggaaggacctctacgccaacacggtgctgtctggc 1000
||||||||||| ||| | |||||| | || ||| | |||||||||| || || |||||
Sbjct: 72255302 atcatgaagtgtgacattgacatccgcaaagacttatacgccaacaacgtcctctctggg 72255243
Query: 1001 gggaccaccatgtaccccggcatcgccgacaggatgcagaaggagatcacggccctggcg 1060
|| ||||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 72255242 ggtaccactatgtatcctggcattgccgacaggatgcagaaggagatcacagccctggcc 72255183
Query: 1061 cccagcaccatgaagatcaag 1081
||||| |||||||||||||||
Sbjct: 72255182 cccagtaccatgaagatcaag 72255162
Score = 113 bits (57), Expect = 4e-22
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 348 agatctggcatcacaccttctacaacgagctgcgcgtggcccccgaggagcaccccgtgc 407
|||||||||| ||| ||||||||||||||||||| || || || |||||||||||| |
Sbjct: 72310107 agatctggcaccactccttctacaacgagctgcgggtagcacctgaggagcaccccaccc 72310048
Query: 408 tgctcacggaggcccccctgaaccccaaggccaaccgtgagaagatgac 456
||||||||||||||||||| || |||||||||||| | |||||||||||
Sbjct: 72310047 tgctcacggaggcccccctaaatcccaaggccaacagggagaagatgac 72309999
Score = 95.6 bits (48), Expect = 9e-17
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 126 tcgacaatggctccggcatgtgcaaagctggctttgctggggatgacgccccccgggccg 185
||||||| ||||||||||||||||| || |||||||| || || || || ||||||||||
Sbjct: 4731826 tcgacaacggctccggcatgtgcaaggccggctttgcgggcgacgatgctccccgggccg 4731767
Query: 186 tgttcccgtccatcgtcgggcgtccccgacaccagg 221
| ||||| |||||||| ||||| |||||||||||||
Sbjct: 4731766 tcttcccctccatcgtggggcgcccccgacaccagg 4731731
>Sscrofa_Chr16
|| Length = 86898991
Score = 565 bits (285), Expect = e-158
Identities = 558/649 (85%)
Strand = Plus / Minus
Query: 131 aatggctccggcatgtgcaaagctggctttgctggggatgacgccccccgggccgtgttc 190
|||||||| || |||||||| || ||||||| ||| || || ||||||||||| ||||||
Sbjct: 38871140 aatggctcagggatgtgcaaggcaggctttggtggtgacgatgccccccgggctgtgttc 38871081
Query: 191 ccgtccatcgtcgggcgtccccgacaccagggtgtcatggtgggcatgggccagaaggac 250
|| ||| | || ||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct: 38871080 ccctccgtggtagggcgtccccggcaccagggcgtcatggtaggcatgggccagaaggac 38871021
Query: 251 agctacgtgggcgacgaggctcagagcaagcggggcatcctgaccctcaagtaccccatc 310
|||| ||||| || || || ||||||||| |||||||||||||||| ||||| |||||
Sbjct: 38871020 tgctatgtgggggatgaagcccagagcaagaggggcatcctgaccctgaagtatcccatt 38870961
Query: 311 gaacacggcatcgtcaccaactgggacgacatggagaagatctggcatcacaccttctac 370
|| || || | |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 38870960 gagcatggagtggtcaccaactgggatgacatggagaagatctggcaccacactttctac 38870901
Query: 371 aacgagctgcgcgtggcccccgaggagcaccccgtgctgctcacggaggcccccctgaac 430
|| ||||| || ||||| || || ||||||||| | || ||||| ||||||||||| |||
Sbjct: 38870900 aatgagctccgtgtggcaccagatgagcaccccatcctcctcaccgaggcccccctcaac 38870841
Query: 431 cccaaggccaaccgtgagaagatgactcagatcatgttcgagaccttcaacacgccggcc 490
|||||| |||||| ||||| ||||||||||||||||||||| | |||||||| || |||
Sbjct: 38870840 cccaagatcaaccgagagaaaatgactcagatcatgttcgaggctttcaacacacctgcc 38870781
Query: 491 atgtacgtggccatccaggccgtgctgtccctgtacgcctctggccgcaccactggcatt 550
||||| ||||| |||||||| ||| | ||||| || ||||| ||||| |||||||||||
Sbjct: 38870780 atgtatgtggctatccaggctgtgttatccctctatgcctcgggccggaccactggcatc 38870721
Query: 551 gtcatggactctggggatggggtcacccacacggtgcccatctacgaggggtacgccctg 610
|| ||||| ||||||||||||||||| ||||| ||||||||||| || || |||||||||
Sbjct: 38870720 gtgatggattctggggatggggtcactcacacagtgcccatctatgaaggctacgccctg 38870661
Query: 611 ccccacgccatcctgcgtctggacctggctggccgggacctgaccgactacctcatgaag 670
||||| |||||||| |||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 38870660 ccccatgccatcctccgtctggacctggctggcagagacctgactgactacctcatgaag 38870601
Query: 671 atcctcacggagcggggctacagcttcaccaccacggccgagcgggagatcgtgcgggac 730
||||| ||||| || ||||||| ||| |||||||| |||||||||||||| || || ||
Sbjct: 38870600 atcctgacggaacgaggctacaactttaccaccacagccgagcgggagattgtccgcgat 38870541
Query: 731 atcaaggagaagctctgctacgtcgccctggacttcgagcaggagatgg 779
|||| |||||||| |||||||| |||||||||||||| || |||||||
Sbjct: 38870540 gtcaaagagaagctgtgctacgtggccctggacttcgaacaagagatgg 38870492
>Sscrofa_Chr01
|| Length = 315321322
Score = 486 bits (245), Expect = e-134
Identities = 436/498 (87%), Gaps = 5/498 (1%)
Strand = Plus / Plus
Query: 1408 gaccttgtactcgagttaactcttcccttggtctctgtttaataccctgtgcatatcttt 1467
||||||||| || ||||||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 248571679 gaccttgtattcaagttaactcttcccttggtatatgtttaataccctctgcatatctt- 248571737
Query: 1468 gatttaaacccctagttacacacacgcggctctgtcacctcgtggctgaggtgagaacct 1527
||||||||||||||||| || || |||||||||||| ||||||||||||||||| |
Sbjct: 248571738 gatttaaacccctagttgcat----gctgctctgtcaccttgtggctgaggtgagaacat 248571793
Query: 1528 gtttatcgtggaagagaaatccgttggctggttgagaatctgagacggagtctctccgat 1587
|||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct: 248571794 gtttattatggaagagaaatctgttggctggttgagaatctgagactgagtctctccaat 248571853
Query: 1588 ctgtgcagggtattcatgtgtccgagctcctattccaggatttctctcgaggctgggcag 1647
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 248571854 ctgtgcagggtattcatgtgtccaagctcctattccaggatttctctcgaggctggcaag 248571913
Query: 1648 agtcctgaaccagttgtcatttctgtcttgccggtctgacggggttgggaaggtccgagc 1707
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 248571914 agtcctgaaccagttgtcatttctgtcttgccagtctgacggggttgggaaggtctgagc 248571973
Query: 1708 cttgagacccactgtcctttcttccccgatgtttgcccgacaaaaaaccgaggagtgtta 1767
||| |||||||||||||||||| | |||||| |||| || ||||||| || |||||
Sbjct: 248571974 cttaggacccactgtcctttcttaggcaatgttttcccgccagaaaaccgtgggttgtta 248572033
Query: 1768 acttgctctgagttggaagcgattgcattcacagctgtaaattaaatcatccttgtagtc 1827
|||||| |||||||||| | ||||||||||| |||||||| | ||| |||| | |
Sbjct: 248572034 acttgccttgagttggaaaagtttgcattcacacctgtaaatgtattcaccctttaattt 248572093
Query: 1828 aggtacggttattgtacgccattctcagttccataatagacgaccaccgattttggtttt 1887
| ||| |||| |||||||| ||||||| ||| ||| ||| ||| || ||||||||||||
Sbjct: 248572094 atgtaaggtttttgtacgcaattctcaattctttaagagatgacaacagattttggtttt 248572153
Query: 1888 ctactgtcacgtgagaac 1905
||||||||||||||||||
Sbjct: 248572154 ctactgtcacgtgagaac 248572171
Score = 319 bits (161), Expect = 3e-84
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 219 agggtgtcatggtgggcatgggccagaaggacagctacgtgggcgacgaggctcagagca 278
|||| ||||||||||| ||||| |||||||| ||||||||| |||||||| |||||||
Sbjct: 152414261 agggggtcatggtgggtatgggtcagaaggattcctacgtgggtgacgaggcccagagca 152414320
Query: 279 agcggggcatcctgaccctcaagtaccccatcgaacacggcatcgtcaccaactgggacg 338
|||| || || |||||||||||||| ||||| || || |||||| ||||||||||||| |
Sbjct: 152414321 agcgaggtattctgaccctcaagtatcccattgagcatggcatcatcaccaactgggatg 152414380
Query: 339 acatggagaagatctggcatcacaccttctacaacgagctgcgcgtggcccccgaggagc 398
||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||
Sbjct: 152414381 acatggagaagatctggcaccacaccttctacaacgagctccgtgtagcccccgaggagc 152414440
Query: 399 accccgtgctgctcacggaggcccccctgaaccccaaggccaaccgtgagaagatgactc 458
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 152414441 accctactctgctcactgaggcccccctgaaccccaaggccaaccgcgagaagatgaccc 152414500
Query: 459 agatcatgttcgagaccttcaacacgccggccatgtacgtggccatccaggccgtgctgt 518
|||||||||| || |||||||| || |||||||| |||||||||||||| |||||||
Sbjct: 152414501 agatcatgtttgaaaccttcaatgtccctgccatgtatgtggccatccaggcggtgctgt 152414560
Query: 519 ccctgtacgcctctggccgcaccac 543
|||| || || |||||||| |||||
Sbjct: 152414561 ccctctatgcttctggccgtaccac 152414585
Score = 135 bits (68), Expect = 1e-28
Identities = 113/128 (88%)
Strand = Plus / Plus
Query: 1097 gagcgcaagtactcggtgtggatcgggggctccatcctggcctcgctgtccaccttccag 1156
||||| |||||||| || ||||| ||||||||||||||||| || |||||||||||||
Sbjct: 152417305 gagcgtaagtactctgtctggattgggggctccatcctggcatccttgtccaccttccaa 152417364
Query: 1157 cagatgtggatcagcaagcaggagtacgacgagtcgggcccgtccatcgtccaccgcaaa 1216
||||||||||| |||||||| ||||| || ||| | ||||| ||||||||||||||||||
Sbjct: 152417365 cagatgtggattagcaagcaagagtatgatgaggcaggcccatccatcgtccaccgcaaa 152417424
Query: 1217 tgcttcta 1224
||||||||
Sbjct: 152417425 tgcttcta 152417432
Score = 127 bits (64), Expect = 2e-26
Identities = 142/168 (84%)
Strand = Plus / Plus
Query: 728 gacatcaaggagaagctctgctacgtcgccctggacttcgagcaggagatggccaccgcc 787
||||| || |||||||| ||||| || |||||||| || ||| | |||||||| || ||
Sbjct: 152415603 gacattaaagagaagctgtgctatgttgccctggattttgagaatgagatggctacagct 152415662
Query: 788 gcgtcctcctcctccctggagaagagctacgagctgcccgacggccaggtcatcaccatc 847
|| || ||||||||| ||||||||||||| || ||||| || |||||||||||||| ||
Sbjct: 152415663 gcttcttcctcctccttggagaagagctatgaactgcctgatggccaggtcatcactatt 152415722
Query: 848 ggcaacgagcgcttccggtgtccagaggcgctcttccagccctccttc 895
||||| ||||||||||| || || ||| ||||||||||||||||||||
Sbjct: 152415723 ggcaatgagcgcttccgctgccctgagacgctcttccagccctccttc 152415770
Score = 117 bits (59), Expect = 2e-23
Identities = 116/135 (85%)
Strand = Plus / Plus
Query: 557 gactctggggatggggtcacccacacggtgcccatctacgaggggtacgccctgccccac 616
|||||||||||||| || ||||||| || ||||| |||||||| || ||| |||| ||
Sbjct: 152415248 gactctggggatggcgtaacccacaacgtccccatttacgagggctatgccttgccacat 152415307
Query: 617 gccatcctgcgtctggacctggctggccgggacctgaccgactacctcatgaagatcctc 676
|||||| |||||||||| |||||||| ||||| || || |||||||||||||||||||||
Sbjct: 152415308 gccatcatgcgtctggatctggctggtcgggatctcactgactacctcatgaagatcctc 152415367
Query: 677 acggagcggggctac 691
|| ||||| ||||||
Sbjct: 152415368 actgagcgtggctac 152415382
Score = 111 bits (56), Expect = 1e-21
Identities = 131/157 (83%), Gaps = 8/157 (5%)
Strand = Plus / Minus
Query: 627 gtctggacctggctggccgggacctgaccgactacctcatgaagatcctcacggagcggg 686
|||||||||||||||||| ||||||||| |||||||||| |||||| |||| |||||
Sbjct: 248571681 gtctggacctggctggccaggacctgactgactacctcaagaagattctcaaggagc--- 248571625
Query: 687 gctacagcttcaccaccacggccgagcgggagatcgtgcgggacatcaaggagaagctct 746
|||||||| |||| |||||| ||||||| || || ||| ||||| |||||||||
Sbjct: 248571624 -----agcttcactgccacagccgagggggagattgttcgtgacttcaagaagaagctct 248571570
Query: 747 gctacgtcgccctggacttcgagcaggagatggccac 783
||||||| || |||||||| ||||||||| |||||||
Sbjct: 248571569 gctacgttgctctggacttggagcaggaggtggccac 248571533
Score = 69.9 bits (35), Expect = 5e-09
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 995 tctggcgggaccaccatgtaccccggcatcgccgacaggatgcagaaggagatcacggcc 1054
||||| || |||||||||||||| || || || || | ||||| ||||| ||||| |||
Sbjct: 152416649 tctggaggtaccaccatgtacccaggtattgctgatcgcatgcaaaaggaaatcactgcc 152416708
Query: 1055 ctggcgcccagcaccatgaagatcaag 1081
||||| |||||||||||||||||||||
Sbjct: 152416709 ctggctcccagcaccatgaagatcaag 152416735
>Sscrofa_Chr14
|| Length = 153851969
Score = 416 bits (210), Expect = e-113
Identities = 297/326 (91%)
Strand = Plus / Plus
Query: 218 cagggtgtcatggtgggcatgggccagaaggacagctacgtgggcgacgaggctcagagc 277
||||| ||||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct: 65237534 cagggcgtcatggtgggtatgggtcagaaagattcctacgtgggcgacgaggctcagagc 65237593
Query: 278 aagcggggcatcctgaccctcaagtaccccatcgaacacggcatcgtcaccaactgggac 337
||| | || |||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 65237594 aagagaggtatcctgaccctcaagtaccccatcgagcacggcatcatcaccaactgggac 65237653
Query: 338 gacatggagaagatctggcatcacaccttctacaacgagctgcgcgtggcccccgaggag 397
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct: 65237654 gacatggagaagatctggcaccacaccttctacaacgagctccgggtggcccccgaggag 65237713
Query: 398 caccccgtgctgctcacggaggcccccctgaaccccaaggccaaccgtgagaagatgact 457
|||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 65237714 caccccaccctgctcaccgaggcccccctcaaccccaaggccaaccgcgagaagatgact 65237773
Query: 458 cagatcatgttcgagaccttcaacacgccggccatgtacgtggccatccaggccgtgctg 517
||||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 65237774 cagatcatgtttgagaccttcaacgtgcccgccatgtacgtggccatccaggcagtgctg 65237833
Query: 518 tccctgtacgcctctggccgcaccac 543
||||| |||||||| ||||| |||||
Sbjct: 65237834 tccctctacgcctccggccgtaccac 65237859
Score = 266 bits (134), Expect = 4e-68
Identities = 173/186 (93%)
Strand = Plus / Plus
Query: 710 gagcgggagatcgtgcgggacatcaaggagaagctctgctacgtcgccctggacttcgag 769
||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 65238245 gagcgcgagatcgtgcgcgacatcaaggagaagctatgctacgtggccctggacttcgag 65238304
Query: 770 caggagatggccaccgccgcgtcctcctcctccctggagaagagctacgagctgcccgac 829
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 65238305 aacgagatggccaccgccgcctcctcctcctccctggagaagagctacgagctgccagac 65238364
Query: 830 ggccaggtcatcaccatcggcaacgagcgcttccggtgtccagaggcgctcttccagccc 889
||||||||||||||||||||||||||||||||||| || || || ||||||||||||||
Sbjct: 65238365 ggccaggtcatcaccatcggcaacgagcgcttccgctgcccggaaacgctcttccagccc 65238424
Query: 890 tccttc 895
||||||
Sbjct: 65238425 tccttc 65238430
Score = 208 bits (105), Expect = 8e-51
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 1080 agatcatcgcgcctcccgagcgcaagtactcggtgtggatcgggggctccatcctggcct 1139
|||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 65238792 agatcatcgccccgccggagcgcaagtactccgtgtggatcggcggctccatcctggcct 65238851
Query: 1140 cgctgtccaccttccagcagatgtggatcagcaagcaggagtacgacgagtcgggcccgt 1199
|||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |
Sbjct: 65238852 cgctgtccaccttccagcagatgtggatcaccaagcaggagtacgacgaggccggcccat 65238911
Query: 1200 ccatcgtccaccgcaaatgcttcta 1224
| |||||||||||||||||||||||
Sbjct: 65238912 ctatcgtccaccgcaaatgcttcta 65238936
Score = 208 bits (105), Expect = 8e-51
Identities = 168/189 (88%)
Strand = Plus / Minus
Query: 707 gccgagcgggagatcgtgcgggacatcaaggagaagctctgctacgtcgccctggacttc 766
|||||||| ||||| || |||||||||||||||||||| ||||| || |||||||||||
Sbjct: 109858839 gccgagcgtgagattgtccgggacatcaaggagaagctgtgctatgtagccctggacttt 109858780
Query: 767 gagcaggagatggccaccgccgcgtcctcctcctccctggagaagagctacgagctgccc 826
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 109858779 gaaaatgagatggccactgccgcgtcctcctcctccctggagaagagctacgagctgcct 109858720
Query: 827 gacggccaggtcatcaccatcggcaacgagcgcttccggtgtccagaggcgctcttccag 886
||||| ||||| ||||||||||| |||||||||||||| || || ||| | || ||||||
Sbjct: 109858719 gacgggcaggtgatcaccatcgggaacgagcgcttccgctgcccggagaccctgttccag 109858660
Query: 887 ccctccttc 895
|||||||||
Sbjct: 109858659 ccctccttc 109858651
Score = 174 bits (88), Expect = 1e-40
Identities = 148/168 (88%)
Strand = Plus / Minus
Query: 914 ggcatccacgagaccaccttcaactcgatcatgaagtgcgacgtggacatcaggaaggac 973
|||||||| |||||||||| |||| ||||||||||||||| | |||||||||||||||
Sbjct: 109857385 ggcatccatgagaccacctacaacagcatcatgaagtgcgacattgacatcaggaaggac 109857326
Query: 974 ctctacgccaacacggtgctgtctggcgggaccaccatgtaccccggcatcgccgacagg 1033
||||| || |||| || || ||||| || |||||||||||||||||||| |||||| |
Sbjct: 109857325 ctctatgctaacaacgtcctctctgggggcaccaccatgtaccccggcattgccgaccgc 109857266
Query: 1034 atgcagaaggagatcacggccctggcgcccagcaccatgaagatcaag 1081
||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 109857265 atgcagaaggagatcacagccctggcacccagcaccatgaagatcaag 109857218
Score = 172 bits (87), Expect = 5e-40
Identities = 132/147 (89%)
Strand = Plus / Minus
Query: 545 ggcattgtcatggactctggggatggggtcacccacacggtgcccatctacgaggggtac 604
|||||||| |||||||||| ||||| |||||||||| |||||||| |||||||| |||
Sbjct: 109860451 ggcattgtgctggactctggagatggtgtcacccacaacgtgcccatttacgagggctac 109860392
Query: 605 gccctgccccacgccatcctgcgtctggacctggctggccgggacctgaccgactacctc 664
|||||||||||||||||| |||||||||||||||| ||||| || || ||||||||||||
Sbjct: 109860391 gccctgccccacgccatcatgcgtctggacctggcgggccgagatctcaccgactacctc 109860332
Query: 665 atgaagatcctcacggagcggggctac 691
||||||||||| |||||||| ||||||
Sbjct: 109860331 atgaagatcctgacggagcgtggctac 109860305
Score = 161 bits (81), Expect = 2e-36
Identities = 129/145 (88%)
Strand = Plus / Minus
Query: 1080 agatcatcgcgcctcccgagcgcaagtactcggtgtggatcgggggctccatcctggcct 1139
||||||| || ||||| |||||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 109853150 agatcattgcccctcctgagcgcaaatactccgtctggattggtggctccatcctggcct 109853091
Query: 1140 cgctgtccaccttccagcagatgtggatcagcaagcaggagtacgacgagtcgggcccgt 1199
| ||||||||||||||||| |||||||||||||| |||||||||||||| | || ||||
Sbjct: 109853090 ctctgtccaccttccagcaaatgtggatcagcaaacaggagtacgacgaagccgggccgt 109853031
Query: 1200 ccatcgtccaccgcaaatgcttcta 1224
|||| ||||||||||||||||||||
Sbjct: 109853030 ccattgtccaccgcaaatgcttcta 109853006
Score = 143 bits (72), Expect = 4e-31
Identities = 144/168 (85%)
Strand = Plus / Plus
Query: 914 ggcatccacgagaccaccttcaactcgatcatgaagtgcgacgtggacatcaggaaggac 973
|||||||| ||||| |||| |||| ||||||||||||||| | || ||||||||||||
Sbjct: 65238543 ggcatccatgagactacctacaacagcatcatgaagtgcgacatcgatatcaggaaggac 65238602
Query: 974 ctctacgccaacacggtgctgtctggcgggaccaccatgtaccccggcatcgccgacagg 1033
|| |||||||||| || |||| || || |||||||||||||| |||||||| ||| |
Sbjct: 65238603 ctgtacgccaacaatgtcatgtcagggggcaccaccatgtacccgggcatcgctgaccgc 65238662
Query: 1034 atgcagaaggagatcacggccctggcgcccagcaccatgaagatcaag 1081
||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 65238663 atgcagaaggagatcaccgctctggcccccagcaccatgaagatcaag 65238710
Score = 125 bits (63), Expect = 1e-25
Identities = 117/135 (86%)
Strand = Plus / Plus
Query: 557 gactctggggatggggtcacccacacggtgcccatctacgaggggtacgccctgccccac 616
|||||||| || || |||||||||| ||||||||||| ||||| ||||| ||||| |||
Sbjct: 65237995 gactctggcgacggcgtcacccacaacgtgcccatctatgagggctacgcgctgccacac 65238054
Query: 617 gccatcctgcgtctggacctggctggccgggacctgaccgactacctcatgaagatcctc 676
|||||| |||| ||||||||||| ||||| || || ||||||||||| ||||||||||||
Sbjct: 65238055 gccatcatgcgcctggacctggccggccgcgatctcaccgactacctgatgaagatcctc 65238114
Query: 677 acggagcggggctac 691
|| ||||| ||||||
Sbjct: 65238115 accgagcgtggctac 65238129
Score = 93.7 bits (47), Expect = 3e-16
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 227 atggtgggcatgggccagaaggacagctacgtgggcgacgaggctcagagcaagcggggc 286
|||||||| ||||| || || |||||||||||||| ||||| || || ||||| | ||
Sbjct: 109866042 atggtgggaatgggacaaaaagacagctacgtgggtgacgaagcccaaagcaaaagagga 109865983
Query: 287 atcctgaccctcaagtaccccatcgaacacggcatcgtcaccaactgggacgacatgga 345
||||||||| | |||||||| || |||||||||||| ||||||||||||| ||||||||
Sbjct: 109865982 atcctgaccttgaagtacccaatagaacacggcatcatcaccaactgggatgacatgga 109865924
Score = 81.8 bits (41), Expect = 1e-12
Identities = 92/109 (84%)
Strand = Plus / Minus
Query: 348 agatctggcatcacaccttctacaacgagctgcgcgtggcccccgaggagcaccccgtgc 407
|||||||||| ||| | |||||||| ||||| || || ||||| || ||||| || |
Sbjct: 109863454 agatctggcaccactctttctacaatgagcttcgtgttgccccagaagagcatccgaccc 109863395
Query: 408 tgctcacggaggcccccctgaaccccaaggccaaccgtgagaagatgac 456
||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 109863394 tgctcaccgaggcacccctgaaccccaaggccaaccgggagaagatgac 109863346
Score = 60.0 bits (30), Expect = 5e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 555 tggactctggggatggggtcacccacacggtgcccatctacgaggggtacgccctgcccc 614
|||| ||||||||||| ||||||||| | |||||||| |||||||| | |||| ||||||
Sbjct: 123340269 tggattctggggatggcgtcacccacgccgtgcccatttacgagggcttcgccatgcccc 123340210
Query: 615 ac 616
||
Sbjct: 123340209 ac 123340208
>Sscrofa_Chr10
|| Length = 79102373
Score = 238 bits (120), Expect = 9e-60
Identities = 223/254 (87%), Gaps = 5/254 (1%)
Strand = Plus / Plus
Query: 1493 gcggctctgtcacctcgtggctgaggtgagaacctgtttatcgtggaagagaaatccgtt 1552
||||||||||||||| | ||| ||||||||||| | | || ||||||| ||||| |||
Sbjct: 10092137 gcggctctgtcaccttggggccgaggtgagaacgtat---tcatggaagacaaatctgtt 10092193
Query: 1553 ggctggttgagaatctgagacggagtctctccgatctgtgcagggtattcatgtgtccga 1612
|| |||||||||||||||||| |||||||||| ||| |||||||||||||||| |||| |
Sbjct: 10092194 ggttggttgagaatctgagaccgagtctctcc-atccgtgcagggtattcatgggtccaa 10092252
Query: 1613 gctcctattccaggatttctctcgaggctgggcagagtcctgaaccagttgtcatttctg 1672
||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 10092253 gctcctattccaggatttctctcgaggctggcaagagtcccgaacccgttgtcatttctg 10092312
Query: 1673 tcttgccggtctgacggggttgggaaggtccgagccttgagacccactgtcctttcttcc 1732
||||||| ||| ||||||||||||||| || |||| | ||| ||||||||||||||| |
Sbjct: 10092313 tcttgcccatctaacggggttgggaaggaccaagcc-tcagaaccactgtcctttcttac 10092371
Query: 1733 ccgatgtttgcccg 1746
||||||||| ||||
Sbjct: 10092372 ccgatgttttcccg 10092385
>gb|GL894474.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3135
Length = 30778
Score = 79.8 bits (40), Expect = 5e-12
Identities = 114/136 (83%), Gaps = 2/136 (1%)
Strand = Plus / Plus
Query: 690 acagcttcaccaccacggccgagcgggagatcgtgcgggacatcaaggagaagctctgct 749
|||||||||||||| |||| |||| ||| ||| ||| |||| ||||||| || |||||
Sbjct: 24293 acagcttcaccaccgcggctgagcagga-atcatgcctgacaccaaggagcagtgctgct 24351
Query: 750 acgtcgccctggacttcgagcaggagatggccaccgccgcgtcctcctcctccctggaga 809
||| ||||||| ||| | |||||||||||||||||||| ||||||| |||||| | |
Sbjct: 24352 ccgtggccctggccttggcgcaggagatggccaccgccgtgtcctcccgctccct-gtgc 24410
Query: 810 agagctacgagctgcc 825
||||||||||||||||
Sbjct: 24411 agagctacgagctgcc 24426
Score = 60.0 bits (30), Expect = 5e-06
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 1385 ttgtagaccttgttgctgattttgaccttgtactcgagttaactcttcccttggtctctg 1444
||||||| ||||| |||||| |||||||||| || ||||| ||||||||||||| ||
Sbjct: 24987 ttgtagaacttgtcgctgatcttgaccttgtgttcaagttagctcttcccttggtgcgtg 25046
Query: 1445 tttaataccctgtgcatatctttgat 1470
||||| ||| ||||| |||||||||
Sbjct: 25047 tttaacgccccgtgcacatctttgat 25072
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,639,951
Number of extensions: 316
Number of successful extensions: 316
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 46
Length of query: 1907
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1885
Effective length of database: 2,808,408,574
Effective search space: 5293850161990
Effective search space used: 5293850161990
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)