Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000254
(2105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071334.1| 60S ribosomal protein L15 [Bos taurus]. 378 e-104
Alignment gi|XP_002685515.1| PREDICTED: ribosomal protein L15-like [Bos t... 378 e-104
Alignment gi|XP_002705395.1| PREDICTED: ribosomal protein L15-like [Bos t... 378 e-104
Alignment gi|XP_001251542.1| PREDICTED: ribosomal protein L15-like [Bos t... 378 e-104
Alignment gi|XP_002697583.1| PREDICTED: ribosomal protein L15-like [Bos t... 378 e-104
>ref|NP_001071334.1| 60S ribosomal protein L15 [Bos taurus].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_002685515.1| PREDICTED: ribosomal protein L15-like [Bos taurus].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKHPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_002705395.1| PREDICTED: ribosomal protein L15-like [Bos taurus].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKHPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_001251542.1| PREDICTED: ribosomal protein L15-like [Bos taurus].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKHPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_002697583.1| PREDICTED: ribosomal protein L15-like [Bos taurus].
Length = 204
Score = 378 bits (970), Expect = e-104
Identities = 182/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHT+GGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTVGGSRRAAWRRRNTLQLHRYR 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,221,487
Number of extensions: 1876310
Number of successful extensions: 4587
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4578
Number of HSP's successfully gapped: 5
Length of query: 701
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 592
Effective length of database: 14,074,782
Effective search space: 8332270944
Effective search space used: 8332270944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000254
(2105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862922.1| PREDICTED: similar to ribosomal protein L15 iso... 378 e-104
Alignment gi|XP_862900.1| PREDICTED: similar to ribosomal protein L15 iso... 378 e-104
Alignment gi|XP_862876.1| PREDICTED: similar to ribosomal protein L15 iso... 378 e-104
Alignment gi|XP_862837.1| PREDICTED: similar to ribosomal protein L15 iso... 378 e-104
Alignment gi|XP_850975.1| PREDICTED: similar to ribosomal protein L15 iso... 378 e-104
Alignment gi|XP_862859.1| PREDICTED: similar to ribosomal protein L15 iso... 367 e-101
Alignment gi|XP_849394.1| PREDICTED: similar to Heterogeneous nuclear rib... 66 1e-10
>ref|XP_862922.1| PREDICTED: similar to ribosomal protein L15 isoform 7 [Canis
familiaris].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_862900.1| PREDICTED: similar to ribosomal protein L15 isoform 6 [Canis
familiaris].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_862876.1| PREDICTED: similar to ribosomal protein L15 isoform 5 [Canis
familiaris].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_862837.1| PREDICTED: similar to ribosomal protein L15 isoform 3 [Canis
familiaris].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_850975.1| PREDICTED: similar to ribosomal protein L15 isoform 2 [Canis
familiaris].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_862859.1| PREDICTED: similar to ribosomal protein L15 isoform 4 [Canis
familiaris].
Length = 207
Score = 367 bits (941), Expect = e-101
Identities = 180/207 (86%), Positives = 181/207 (87%), Gaps = 3/207 (1%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEER---AGRHCGALRVLN 437
ATYGKPVHHGVNQLKFARSLQSVAE +GRHCGALRVLN
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEVSEPCSGRHCGALRVLN 120
Query: 438 SYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKG 617
SYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKG
Sbjct: 121 SYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKG 180
Query: 618 HKFHHTIGGSRRAAWRRRNTLQLHRYR 698
HKFHHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HKFHHTIGGSRRAAWRRRNTLQLHRYR 207
>ref|XP_849394.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein A1
(Helix-destabilizing protein) (Single-strand binding
protein) (hnRNP core protein A1) (HDP) [Canis
familiaris].
Length = 184
Score = 66.2 bits (160), Expect = 1e-10
Identities = 50/106 (47%), Positives = 53/106 (50%)
Frame = -1
Query: 689 VELESIAPSPSCTAGTTNXXXXXXXXXXXXXXXACRSQPSHLPMLVDWFGDPLGVRISSD 510
VEL +IA S CT TTN PS +LV RISSD
Sbjct: 2 VELGTIASSVGCTMRTTNSVVEPVG-------------PSKTMVLV-------ACRISSD 41
Query: 509 SFMEWINEDNLKEFVCRIFTNPVRIQDSQSPTVASSSLLGNRLKAS 372
FMEWI E EFV IF NP+RIQD QSP V SSLL NR KAS
Sbjct: 42 DFMEWI-ERITSEFVHGIFVNPLRIQDPQSPIVVFSSLLCNRQKAS 86
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,515,225
Number of extensions: 1932044
Number of successful extensions: 4553
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4535
Number of HSP's successfully gapped: 7
Length of query: 701
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 591
Effective length of database: 15,207,544
Effective search space: 8987658504
Effective search space used: 8987658504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000254
(2105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002939.2| 60S ribosomal protein L15 [Homo sapiens]. 378 e-104
>ref|NP_002939.2| 60S ribosomal protein L15 [Homo sapiens].
Length = 204
Score = 378 bits (971), Expect = e-104
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 76,266,161
Number of extensions: 1924368
Number of successful extensions: 4663
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4655
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 591
Effective length of database: 14,671,124
Effective search space: 8670634284
Effective search space used: 8670634284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000254
(2105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001473857.1| PREDICTED: 60S ribosomal protein L15-like is... 378 e-105
Alignment gi|XP_003086009.1| PREDICTED: 60S ribosomal protein L15-like [M... 378 e-105
Alignment gi|NP_079862.1| 60S ribosomal protein L15 [Mus musculus]. 378 e-105
Alignment gi|XP_001480343.1| PREDICTED: 60S ribosomal protein L15-like [M... 376 e-104
Alignment gi|XP_001481087.1| PREDICTED: 60S ribosomal protein L15-like [M... 376 e-104
Alignment gi|XP_001481082.1| PREDICTED: 60S ribosomal protein L15-like is... 371 e-102
Alignment gi|XP_003086580.1| PREDICTED: 60S ribosomal protein L15-like [M... 371 e-102
Alignment gi|XP_914715.1| PREDICTED: 60S ribosomal protein L15-like [Mus ... 355 8e-98
Alignment gi|XP_357471.1| PREDICTED: 60S ribosomal protein L15-like [Mus ... 322 9e-88
Alignment gi|XP_917371.1| PREDICTED: 60S ribosomal protein L15-like [Mus ... 322 9e-88
>ref|XP_001473857.1| PREDICTED: 60S ribosomal protein L15-like isoform 2 [Mus musculus].
Length = 204
Score = 378 bits (971), Expect = e-105
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRSGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_003086009.1| PREDICTED: 60S ribosomal protein L15-like [Mus musculus].
Length = 204
Score = 378 bits (971), Expect = e-105
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRSGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|NP_079862.1| 60S ribosomal protein L15 [Mus musculus].
Length = 204
Score = 378 bits (971), Expect = e-105
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_001480343.1| PREDICTED: 60S ribosomal protein L15-like [Mus musculus].
Length = 204
Score = 376 bits (966), Expect = e-104
Identities = 182/203 (89%), Positives = 182/203 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRY 695
HHTIGGSRRAAWRRRNTLQLHRY
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRY 203
>ref|XP_001481087.1| PREDICTED: 60S ribosomal protein L15-like [Mus musculus].
Length = 204
Score = 376 bits (965), Expect = e-104
Identities = 182/204 (89%), Positives = 182/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
A YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGAIYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_001481082.1| PREDICTED: 60S ribosomal protein L15-like isoform 2 [Mus musculus].
Length = 204
Score = 371 bits (953), Expect = e-102
Identities = 180/204 (88%), Positives = 180/204 (88%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQ VAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVHHGGRKRPVPKGATYGKPVHHGVNQLKFARSLQPVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTY FFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKS GLGKGHKF
Sbjct: 121 VGEDSTYTFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSGGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_003086580.1| PREDICTED: 60S ribosomal protein L15-like [Mus musculus].
Length = 204
Score = 371 bits (953), Expect = e-102
Identities = 180/204 (88%), Positives = 180/204 (88%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQ VAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVHHGGRKRPVPKGATYGKPVHHGVNQLKFARSLQPVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTY FFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKS GLGKGHKF
Sbjct: 121 VGEDSTYTFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSGGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_914715.1| PREDICTED: 60S ribosomal protein L15-like [Mus musculus].
Length = 201
Score = 355 bits (911), Expect = 8e-98
Identities = 175/204 (85%), Positives = 175/204 (85%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRK VM FLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKT---VMCFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 57
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 58 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 117
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMR LTSAGRKSRGLGKGHKF
Sbjct: 118 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRELTSAGRKSRGLGKGHKF 177
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGS RAAWRRRNTLQ HRYR
Sbjct: 178 HHTIGGSHRAAWRRRNTLQFHRYR 201
>ref|XP_357471.1| PREDICTED: 60S ribosomal protein L15-like [Mus musculus].
Length = 193
Score = 322 bits (824), Expect = 9e-88
Identities = 160/203 (78%), Positives = 161/203 (79%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSD+MR LLRV CWQYRQLS LHRAPRPTRPDKARRLGYK KQ
Sbjct: 1 MGAYKYIQELWRKKQSDMMRSLLRVCCWQYRQLSVLHRAPRPTRPDKARRLGYKTKQDYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHG QL FARSLQSVAEERAGRHCG LRVLNSYW
Sbjct: 61 ICRIRVHGGGRKRPVPKGATYGKPVHHG-GQLNFARSLQSVAEERAGRHCGTLRVLNSYW 119
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFE ILIDPFHKAIRRNPDTQWITKPVHKHREM RGLGKGHKF
Sbjct: 120 VGEDSTYKFFEAILIDPFHKAIRRNPDTQWITKPVHKHREM----------RGLGKGHKF 169
Query: 627 HHTIGGSRRAAWRRRNTLQLHRY 695
HHTIGGSR AAWRRRNTLQ HRY
Sbjct: 170 HHTIGGSRLAAWRRRNTLQFHRY 192
>ref|XP_917371.1| PREDICTED: 60S ribosomal protein L15-like [Mus musculus].
Length = 193
Score = 322 bits (824), Expect = 9e-88
Identities = 160/203 (78%), Positives = 161/203 (79%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSD+MR LLRV CWQYRQLS LHRAPRPTRPDKARRLGYK KQ
Sbjct: 1 MGAYKYIQELWRKKQSDMMRSLLRVCCWQYRQLSVLHRAPRPTRPDKARRLGYKTKQDYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHG QL FARSLQSVAEERAGRHCG LRVLNSYW
Sbjct: 61 ICRIRVHGGGRKRPVPKGATYGKPVHHG-GQLNFARSLQSVAEERAGRHCGTLRVLNSYW 119
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFE ILIDPFHKAIRRNPDTQWITKPVHKHREM RGLGKGHKF
Sbjct: 120 VGEDSTYKFFEAILIDPFHKAIRRNPDTQWITKPVHKHREM----------RGLGKGHKF 169
Query: 627 HHTIGGSRRAAWRRRNTLQLHRY 695
HHTIGGSR AAWRRRNTLQ HRY
Sbjct: 170 HHTIGGSRLAAWRRRNTLQFHRY 192
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 65,107,769
Number of extensions: 1631300
Number of successful extensions: 3731
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3706
Number of HSP's successfully gapped: 11
Length of query: 701
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 593
Effective length of database: 12,373,671
Effective search space: 7337586903
Effective search space used: 7337586903
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000254
(2105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358385.1| PREDICTED: 60S ribosomal protein L15-like is... 378 e-105
Alignment gi|XP_003358384.1| PREDICTED: 60S ribosomal protein L15-like is... 378 e-105
Alignment gi|XP_003358383.1| PREDICTED: 60S ribosomal protein L15-like is... 378 e-105
>ref|XP_003358385.1| PREDICTED: 60S ribosomal protein L15-like isoform 3 [Sus scrofa].
Length = 204
Score = 378 bits (971), Expect = e-105
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_003358384.1| PREDICTED: 60S ribosomal protein L15-like isoform 2 [Sus scrofa].
Length = 204
Score = 378 bits (971), Expect = e-105
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
>ref|XP_003358383.1| PREDICTED: 60S ribosomal protein L15-like isoform 1 [Sus scrofa].
Length = 204
Score = 378 bits (971), Expect = e-105
Identities = 183/204 (89%), Positives = 183/204 (89%)
Frame = +3
Query: 87 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQXXX 266
MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ
Sbjct: 1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 267 XXXXXXXXXXXXXXXXXXATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 446
ATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 447 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 626
VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
Query: 627 HHTIGGSRRAAWRRRNTLQLHRYR 698
HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,662,973
Number of extensions: 1198196
Number of successful extensions: 2842
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2835
Number of HSP's successfully gapped: 3
Length of query: 701
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 595
Effective length of database: 8,704,850
Effective search space: 5179385750
Effective search space used: 5179385750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000254
(2105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 3313 0.0
Sscrofa_Chr08 2472 0.0
Sscrofa_Chr14 1877 0.0
Sscrofa_Chr15 414 e-113
gb|JH118540.1| Sus scrofa unplaced genomic scaffold ChrUScaf909 383 e-103
Sscrofa_Chr09 383 e-103
Sscrofa_ChrY 305 5e-80
Sscrofa_Chr05 264 2e-67
gb|GL894777.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 147 3e-32
Sscrofa_Chr03 101 2e-18
>Sscrofa_Chr13
|| Length = 218635234
Score = 3313 bits (1671), Expect = 0.0
Identities = 1700/1712 (99%), Gaps = 1/1712 (0%)
Strand = Plus / Plus
Query: 394 aggagcgagctggacgccactgtggggctctgagagtcctgaattcttactgggttggtg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12256990 aggagcgagctggacgccactgtggggctctgagagtcctgaattcttactgggttggtg 12257049
Query: 454 aagattctacatacaaattctttgaggttatcctcattgatccattccataaagctatca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257050 aagattctacatacaaattctttgaggttatcctcattgatccattccataaagctatca 12257109
Query: 514 gaagaaatcctgacacccagtggatcaccaaaccagtccacaagcatagggagatgcgag 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257110 gaagaaatcctgacacccagtggatcaccaaaccagtccacaagcatagggagatgcgag 12257169
Query: 574 ggctgacttctgcaggcagaaagagccgcggccttggaaagggccacaagttccaccaca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257170 ggctgacttctgcaggcagaaagagccgcggccttggaaagggccacaagttccaccaca 12257229
Query: 634 ctattggtggttcccgccgtgcagcttggagaaggcgcaatactctccagctccaccgtt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257230 ctattggtggttcccgccgtgcagcttggagaaggcgcaatactctccagctccaccgtt 12257289
Query: 694 accgctaataagtaatgtttgtaaaattcttacctaataaacaatttaggacattcatgt 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257290 accgctaataagtaatgtttgtaaaattcttacctaataaacaatttaggacattcatgt 12257349
Query: 754 ctgcttaaaagtgttttttaatttgtctgttaaaactagttgtctgcagattgtttcatt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257350 ctgcttaaaagtgttttttaatttgtctgttaaaactagttgtctgcagattgtttcatt 12257409
Query: 814 gaatgcattgtcaaattttgaaagttaaaagtgcaataatgtttgaagatcttaagtgat 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257410 gaatgcattgtcaaattttgaaagttaaaagtgcaataatgtttgaagatcttaagtgat 12257469
Query: 874 ggtgtatcttgtttctaataagggaaatgccttgcttttattagggagttgatatgtctg 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257470 ggtgtatcttgtttctaataagggaaatgccttgcttttattagggagttgatatgtctg 12257529
Query: 934 tttaaaatgctgtttggaacaataggtgtaaaattctgtaaaagaggcagaaactagccg 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257530 tttaaaatgctgtttggaacaataggtgtaaaattctgtaaaagaggcagaaactagccg 12257589
Query: 994 tgtagatttgttggtgcatgtgatgaaacctacagctttattgggggtgatgcaatgctc 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257590 tgtagatttgttggtgcatgtgatgaaacctacagctttattgggggtgatgcaatgctc 12257649
Query: 1054 tgctggtttactctaaaagtggctgatttatggagtttggcaaggagaaactaaattttg 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257650 tgctggtttactctaaaagtggctgatttatggagtttggcaaggagaaactaaattttg 12257709
Query: 1114 aattctcctttaaaatgtgaaggatgtcctgatcctttatcatggtcatatgcagaaaaa 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257710 aattctcctttaaaatgtgaaggatgtcctgatcctttatcatggtcatatgcagaaaaa 12257769
Query: 1174 taatgaaagttgagtggggcccacgtttcttaggcttgatctaatctgtttatataactg 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257770 taatgaaagttgagtggggcccacgtttcttaggcttgatctaatctgtttatataactg 12257829
Query: 1234 ctgcttcaaaagggagaaatgtaaaagaatgcaagcatttttaagagaattgaataaacc 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257830 ctgcttcaaaagggagaaatgtaaaagaatgcaagcatttttaagagaattgaataaacc 12257889
Query: 1294 tgttgcgagaggattctcttaaaaatgaaaggaatcctggtaaacctaaactgccttggc 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257890 tgttgcgagaggattctcttaaaaatgaaaggaatcctggtaaacctaaactgccttggc 12257949
Query: 1354 ctccatggtaaccattgaagttcacataaaaggtggggtttgtggtttaatcccatgact 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12257950 ctccatggtaaccattgaagttcacataaaaggtggggtttgtggtttaatcccatgact 12258009
Query: 1414 ccgatctgtagcatactgcaaagtagtcatggtatttacactggtgtacattgaaactga 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258010 ccgatctgtagcatactgcaaagtagtcatggtatttacactggtgtacattgaaactga 12258069
Query: 1474 tggaaattgaacattaaatgagattggggttactagccttaagatttgtaagctagtaat 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258070 tggaaattgaacattaaatgagattggggttactagccttaagatttgtaagctagtaat 12258129
Query: 1534 gctaggtaggattggggaattggtgtccatgagctatctttcaaatgttggaggacagga 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258130 gctaggtaggattggggaattggtgtccatgagctatctttcaaatgttggaggacagga 12258189
Query: 1594 aaaaacttatatcaaaattttaagtgttttatctgtagtattagtttgtgactattatga 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258190 aaaaacttatatcaaaattttaagtgttttatctgtagtattagtttgtgactattatga 12258249
Query: 1654 gctctctctaagccacctnnnnnnnnnnnataactgctaaatctaatcagtgttaaagtt 1713
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 12258250 gctctctctaagccacctgggggggggggataactgctaaatctaatcagtgttaaagtt 12258309
Query: 1714 ttctttggtaaagccactatccattcccaaaaggctactgagaaaagtcatgtagttgat 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258310 ttctttggtaaagccactatccattcccaaaaggctactgagaaaagtcatgtagttgat 12258369
Query: 1774 gtcaatacaagttcatggtttccaatctaactttatgtgttgtctacagttatttttcta 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258370 gtcaatacaagttcatggtttccaatctaactttatgtgttgtctacagttatttttcta 12258429
Query: 1834 attcctgttcaaactccccttaagatcctcaccattccacacactagccaggccattaat 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258430 attcctgttcaaactccccttaagatcctcaccattccacacactagccaggccattaat 12258489
Query: 1894 tgtgcccaccttagtgtttggcataccacaacatcctgttggcattttgtcttctagtgg 1953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258490 tgtgcccaccttagtgtttggcataccacaacatcctgttggcattttgtcttctagtgg 12258549
Query: 1954 actaggcctctgtctcccagggtggatttgagtgtgtaggaaatatggaagaggaatcac 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258550 actaggcctctgtctcccagggtggatttgagtgtgtaggaaatatggaagaggaatcac 12258609
Query: 2014 cccaattctgtccagttcttggtttgctctcagtaggtaattttgaaatataatggctgg 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12258610 cccaattctgtccagttcttggtttgctctcagtaggtaattttgaaatataatggctgg 12258669
Query: 2074 ttttccctgaaccaatttttctcatcatttct 2105
|||||||||||||||||||||||||||||||
Sbjct: 12258670 -tttccctgaaccaatttttctcatcatttct 12258700
Score = 3174 bits (1601), Expect = 0.0
Identities = 1685/1714 (98%), Gaps = 12/1714 (0%)
Strand = Plus / Plus
Query: 394 aggagcgagctggacgccactgtggggctctgagagtcctgaattcttactgggttggtg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166555 aggagcgagctggacgccactgtggggctctgagagtcctgaattcttactgggttggtg 12166614
Query: 454 aagattctacatacaaattctttgaggttatcctcattgatccattccataaagctatca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166615 aagattctacatacaaattctttgaggttatcctcattgatccattccataaagctatca 12166674
Query: 514 gaagaaatcctgacacccagtggatcaccaaaccagtccacaagcatagggagatgcgag 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166675 gaagaaatcctgacacccagtggatcaccaaaccagtccacaagcatagggagatgcgag 12166734
Query: 574 ggctgacttctgcaggcagaaagagccgcggccttggaaagggccacaagttccaccaca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166735 ggctgacttctgcaggcagaaagagccgcggccttggaaagggccacaagttccaccaca 12166794
Query: 634 ctattggtggtt-cccgccgtgcagcttggagaaggcgcaatactctccagctccaccgt 692
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166795 ctattggtggtttcccgccgtgcagcttggagaaggcgcaatactctccagctccaccgt 12166854
Query: 693 taccgctaataagtaatgtttgtaaaattcttacctaataaacaatttaggacatt-cat 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12166855 taccgctaataagtaatgtttgtaaaattcttacctaataaacaatttaggacatttcat 12166914
Query: 752 gtctgcttaaaagtgttttttaatttgtctgttaaaactagttgtctgcagattgtttca 811
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12166915 gtctgcttaaaagtgttttttaatttgtctgttaaaactagttgtctgcagatagtttca 12166974
Query: 812 ttgaatgcattgtcaaattttgaaagttaaaagtgcaataatgtttgaagatcttaagtg 871
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 12166975 ttgaatgcattgtcaaattctgaaagttaaaagtgcaataatgtttgaagatcttaagtg 12167034
Query: 872 atggtgtatcttgtttctaataagggaaatgccttgcttttattagggagttgatatgtc 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12167035 atggtgtatcttgtttctaataagggaaatgccttgcttttattagggagttgatatatc 12167094
Query: 932 tgtttaaaatgctgtttggaacaataggtgtaaaattctgtaaaagaggcagaaactagc 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167095 tgtttaaaatgctgtttggaacaataggtgtaaaattctgtaaaagaggcagaaactagc 12167154
Query: 992 cgtgtagatttgttggtgcatgtgatgaaacctacagctttattgggggtgatgcaatgc 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167155 cgtgtagatttgttggtgcatgtgatgaaacctacagctttattgggggtgatgcaatgc 12167214
Query: 1052 tctgctggtttactctaaaagtggctgatttatggagtttggcaaggagaaactaaattt 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167215 tctgctggtttactctaaaagtggctgatttatggagtttggcaaggagaaactaaattt 12167274
Query: 1112 tgaattctcctttaaaatgtgaaggatgtcctgatcctttatcatggtcatatgcagaaa 1171
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167275 tgagttctcctttaaaatgtgaaggatgtcctgatcctttatcatggtcatatgcagaaa 12167334
Query: 1172 aataatgaaagttgagtggggcccacgtttcttaggcttgatctaatctgtttatataac 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167335 aataatgaaagttgagtggggcccacgtttcttaggcttgatctaatctgtttatataac 12167394
Query: 1232 tgctgcttcaaaagggagaaatgtaaaagaatgcaagcatttttaagagaattgaataaa 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167395 tgctgcttcaaaagggagaaatgtaaaagaatgcaagcatttttaagagaattgaataaa 12167454
Query: 1292 cctgttgcgagaggattctcttaaaaatgaaaggaatcctggtaaacctaaactgccttg 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167455 cctgttgcgagaggattctcttaaaaatgaaaggaatcctggtaaacctaaactgccttg 12167514
Query: 1352 gcctccatggtaaccattgaagttcacataaaaggtggggtttgtggtttaatcccatga 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167515 gcctccatggtaaccattgaagttcacataaaaggtggggtttgtggtttaatcccatga 12167574
Query: 1412 ctccgatctgtagcatactgcaaagtagtcatggtatttacactggtgtacattgaaact 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167575 ctccgatctgtagcatactgcaaagtagtcatggtatttacactggtgtacattgaaact 12167634
Query: 1472 gatggaaattgaacattaaatgagattggggttactagccttaagatttgtaagctagta 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167635 gatggaaattgaacattaaatgagattggggttactagccttaagatttgtaagctagta 12167694
Query: 1532 atgctaggtaggattggggaattggtgtccatgagctatctttcaaatgttggaggacag 1591
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167695 atgcta---------ggggaattggtgtccatgagctatctttcaaatgttggaggacag 12167745
Query: 1592 gaaaaaacttatatcaaaattttaagtgttttatctgtagtattagtttgtgactattat 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167746 gaaaaaacttatatcaaaattttaagtgttttatctgtagtattagtttgtgactattat 12167805
Query: 1652 gagctctctctaagccacctnnnnnnnnnnnataactgctaaatctaatcagtgttaaag 1711
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12167806 gagctctctctaagccacctgggggggggggataactgctaaatctaatcagtgttaaag 12167865
Query: 1712 ttttctttggtaaagccactatccattcccaaaaggctactgagaaaagtcatgtagttg 1771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167866 ttttctttggtaaagccactatccattcccaaaaggctactgagaaaagtcatgtagttg 12167925
Query: 1772 atgtcaatacaagttcatggtttccaatctaactttatgtgttgtctacagttatttttc 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167926 atgtcaatacaagttcatggtttccaatctaactttatgtgttgtctacagttatttttc 12167985
Query: 1832 taattcctgttcaaactccccttaagatcctcaccattccacacactagccaggccatta 1891
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167986 taattcctgctcaaactccccttaagatcctcaccattccacacactagccaggccatta 12168045
Query: 1892 attgtgcccaccttagtgtttggcataccacaacatcctgttggcattttgtcttctagt 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12168046 attgtgcccaccttagtgtttggcataccacaacatcctgttggcattttgtcttctagt 12168105
Query: 1952 ggactaggcctctgtctcccagggtggatttgagtgtgtaggaaatatggaagaggaatc 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12168106 ggactaggcctctgtctcccagggtggatttgagtgtgtaggaaatatggaagaggaatc 12168165
Query: 2012 accccaattctgtccagttcttggtttgctctcagtaggtaattttgaaatataatggct 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12168166 accccaattctgtccagttcttggtttgctctcagtaggtaattttgaaatataatggct 12168225
Query: 2072 ggttttccctgaaccaatttttctcatcatttct 2105
|| ||||||||||||| |||||||||||||||||
Sbjct: 12168226 gg-tttccctgaaccagtttttctcatcatttct 12168258
Score = 428 bits (216), Expect = e-117
Identities = 443/516 (85%), Gaps = 2/516 (0%)
Strand = Plus / Minus
Query: 68 agccatcaggtaagccaagatgggcgcttacaagtacatccaggagctatggaggaagaa 127
||||||||||| ||||||||||||||| | |||||||||||| |||||||| | |||||
Sbjct: 211406884 agccatcaggtgagccaagatgggcgcgtccaagtacatccaacagctatggggcaagaa 211406825
Query: 128 gcagtccgacgtcatgcgctttctcctccgggtgcgctgctggcagtaccgccagctctc 187
|| | || ||||| ||||||||||| |||| | ||||||||||||||||||| ||
Sbjct: 211406824 gccacctgatgtcatttgctttctcctctgggttcatcgctggcagtaccgccagctttc 211406765
Query: 188 cgctctccacagggccccccgccccacccggcccgataaggcgcgcaggctgggatacaa 247
| |||||| ||| ||| || |||||| ||| |||| || || |||||||| |||||
Sbjct: 211406764 tgagctccacgaggcaccctgctccaccctccccaataacgcacggaggctggggtacaa 211406705
Query: 248 ggccaagcaaggttatgtcatatatcggattcgtgtgcgccgcggtggccgcaaacgccc 307
|||||||| |||||||||||||||||||| ||||||||| || |||||| |||| ||||
Sbjct: 211406704 ggccaagccaggttatgtcatatatcggaggcgtgtgcgctgcagtggccacaaaggccc 211406645
Query: 308 agttcctaagggtgccacctacggcaagcctgtccaccatggtgtcaaccagctaaagtt 367
|||||||| |||||| |||||| |||||||||||||| |||||||||| ||||||||||
Sbjct: 211406644 agttcctaggggtgc-acctaccgcaagcctgtccactgtggtgtcaactagctaaagtt 211406586
Query: 368 tgctcgaagccttcagtctgttgccgaggagcgagctggacgccactgtggggctctgag 427
| | |||||||||||| ||||| |||||| || |||| ||||||||| |||||||||
Sbjct: 211406585 tcaacaaagccttcagtccattgcccaggagcaagttggatgccactgtgcggctctgag 211406526
Query: 428 agtcctgaattcttactgggttggtgaagattctacatacaaattctttgaggttatcct 487
|||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||| |||
Sbjct: 211406525 agtcctgagttcttactgggttggtgaagattctacgtacaagttctttgacgttgccct 211406466
Query: 488 cattgatccattccataaagctatcagaagaaatcctgacacccagt-ggatcaccaaac 546
| |||||||||||||||||||| ||||||||||||||| || |||| ||||| ||||||
Sbjct: 211406465 cgttgatccattccataaagctctcagaagaaatcctggcatgcagtgggatcgccaaac 211406406
Query: 547 cagtccacaagcatagggagatgcgagggctgactt 582
||||||||||||| ||||||||||||||||||||||
Sbjct: 211406405 cagtccacaagcacagggagatgcgagggctgactt 211406370
Score = 369 bits (186), Expect = 4e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 75 aggtaagccaagatgggcgcttacaagtacatccaggagctatggaggaagaagcagtcc 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12255853 aggtaagccaagatgggcgcttacaagtacatccaggagctatggaggaagaagcagtcc 12255912
Query: 135 gacgtcatgcgctttctcctccgggtgcgctgctggcagtaccgccagctctccgctctc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12255913 gacgtcatgcgctttctcctccgggtgcgctgctggcagtaccgccagctctccgctctc 12255972
Query: 195 cacagggccccccgccccacccggcccgataaggcgcgcaggctgggatacaaggccaag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12255973 cacagggccccccgccccacccggcccgataaggcgcgcaggctgggatacaaggccaag 12256032
Query: 255 caaggt 260
||||||
Sbjct: 12256033 caaggt 12256038
Score = 361 bits (182), Expect = 1e-96
Identities = 185/186 (99%)
Strand = Plus / Plus
Query: 75 aggtaagccaagatgggcgcttacaagtacatccaggagctatggaggaagaagcagtcc 134
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12165417 aggtaagccaagatgggcgcgtacaagtacatccaggagctatggaggaagaagcagtcc 12165476
Query: 135 gacgtcatgcgctttctcctccgggtgcgctgctggcagtaccgccagctctccgctctc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12165477 gacgtcatgcgctttctcctccgggtgcgctgctggcagtaccgccagctctccgctctc 12165536
Query: 195 cacagggccccccgccccacccggcccgataaggcgcgcaggctgggatacaaggccaag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12165537 cacagggccccccgccccacccggcccgataaggcgcgcaggctgggatacaaggccaag 12165596
Query: 255 caaggt 260
||||||
Sbjct: 12165597 caaggt 12165602
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 257 aggttatgtcatatatcggattcgtgtgcgccgcggtggccgcaaacgcccagttcctaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12165799 aggttatgtcatatatcggattcgtgtgcgccgcggtggccgcaaacgcccagttcctaa 12165858
Query: 317 gggtgccacctacggcaagcctgtccaccatggtgtcaaccagctaaagtttgctcgaag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12165859 gggtgccacctacggcaagcctgtccaccatggtgtcaaccagctaaagtttgctcgaag 12165918
Query: 377 ccttcagtctgttgccgagg 396
||||||||||||||||||||
Sbjct: 12165919 ccttcagtctgttgccgagg 12165938
Score = 278 bits (140), Expect = 1e-71
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 257 aggttatgtcatatatcggattcgtgtgcgccgcggtggccgcaaacgcccagttcctaa 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12256235 aggttatgtcatatatcggattcgtgtgcgccgcggtggccgcaaacgcccagttcctaa 12256294
Query: 317 gggtgccacctacggcaagcctgtccaccatggtgtcaaccagctaaagtttgctcgaag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12256295 gggtgccacctacggcaagcctgtccaccatggtgtcaaccagctaaagtttgctcgaag 12256354
Query: 377 ccttcagtctgttgccgagg 396
||||||||||||||||||||
Sbjct: 12256355 ccttcagtctgttgccgagg 12256374
Score = 145 bits (73), Expect = 1e-31
Identities = 94/100 (94%), Gaps = 2/100 (2%)
Strand = Plus / Minus
Query: 653 tgcagcttggagaaggcgcaatactctccagctccaccgttaccgctaata--agtaatg 710
|||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct: 211406355 tgcagcttggagaaggtgcaacactctccagctccaccggtaccgctaatataagtaagg 211406296
Query: 711 tttgtaaaattcttacctaataaacaatttaggacattca 750
||||||||||||||||||||||||||||||||||||||||
Sbjct: 211406295 tttgtaaaattcttacctaataaacaatttaggacattca 211406256
Score = 79.8 bits (40), Expect = 6e-12
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 36 gggagaaagcgtcttgctttccgtctgtcggcagccatcaggta 79
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12164809 gggagaaagcgtcttcctttccgtctgtcggcagccatcaggta 12164852
Score = 79.8 bits (40), Expect = 6e-12
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 36 gggagaaagcgtcttgctttccgtctgtcggcagccatcaggta 79
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12255245 gggagaaagcgtcttcctttccgtctgtcggcagccatcaggta 12255288
>Sscrofa_Chr08
|| Length = 148491826
Score = 2472 bits (1247), Expect = 0.0
Identities = 1642/1762 (93%), Gaps = 24/1762 (1%)
Strand = Plus / Plus
Query: 58 gtctgtcggcagccatcaggtaagccaagatgggcgcttacaagtacatccaggagctat 117
||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct: 50759851 gtctggcggcagccatcaggtaagccgagatgggcgcctacaagtacatccaggaactat 50759910
Query: 118 ggaggaagaagcagtccgacgtcatgcgctttctcctccgggtgcgctgctggcagtacc 177
||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct: 50759911 ggaggaagaagcaatccgacgtcatgcgctttctcctccgggtccgctgcgggcggtacc 50759970
Query: 178 gccagctctccgctctccacagggcccccc-gccccacccggcccgataaggcgcgcagg 236
|||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct: 50759971 gccagctctctgctctccacaggtcccccccgccccacccggcctgataaggcgcgcagg 50760030
Query: 237 ctgggatacaaggccaagcaaggttatgtcatatatcggattcgtgtgcgccgcggtggc 296
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 50760031 ctgggatacaaggccaagcaaggttatgtcatatatcggattcgtgtgcgccccggtggc 50760090
Query: 297 cgcaaacgcccagttcctaagggtgccacctacggcaagcctgtccaccatggtgtcaac 356
|||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct: 50760091 cgcaaacgcccagttcctaagggtaccgcctacggcaagcctgtccaccttggtgtcaac 50760150
Query: 357 cagctaaagtttgctcgaagccttcagtctgttgccgaggagcgagctggacgccactgt 416
||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||
Sbjct: 50760151 cagctaaagtttgct-gaagccttcagtctgttgtggagcatcgagctggacgccactgt 50760209
Query: 417 ggggctctgagagtcctgaattcttactgggttggtgaagattctacatacaaattcttt 476
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 50760210 ggggctctgagagtcctgaattcttactgggttgatgaagagcctacatacaaattcttt 50760269
Query: 477 gaggttatcctcattgatccattccataaagctatcagaagaaatcctgacacccagtgg 536
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 50760270 gaggttatcgtcattgatccattccataaagctatcagaagaaatcctgacacc-agtgg 50760328
Query: 537 atcaccaaaccagtccacaagcatagggagatgcgagggctgacttctgcaggcagaaag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50760329 atcaccaaaccagtccacaagcatagggagatgcgagggctgacttctgcaggcagaaag 50760388
Query: 597 agccgcggccttggaaagggccacaagttccaccacactattggtggttcccgccgtgca 656
|||| | |||||||||||| || |||||||||||||||||| |||||||| | ||||||
Sbjct: 50760389 agccacagccttggaaaggaccgcaagttccaccacactataggtggttctccccgtgct 50760448
Query: 657 gcttggagaaggcgcaatactctccagctccaccgttaccgctaataagtaatgtttgta 716
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 50760449 gcttgaagaaggcgcaatactctccagctccaccgtttcggctaataagtaatgtttgta 50760508
Query: 717 aaattcttacctaataaacaatttaggacattcatgtctgcttaaaagtgttttttaatt 776
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 50760509 aaattcttacctaataaacaatttagaacattcatgtctgcttaaaagtgttttg--att 50760566
Query: 777 tgtctgttaaaactagttgtct-gcagattgtttcattgaatgcattgtcaaattttgaa 835
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 50760567 tgtctgttaaaactagtttttttgcagattgtttcattgaatgcattgtcaaattttgaa 50760626
Query: 836 agttaaaagtgcaataatgtttgaagatcttaagtgatggtgtatcttgtttctaataag 895
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 50760627 agttaaa-gtgcaataatgtctgaagatcttaagtgatggtgtatcttgtttctaataag 50760685
Query: 896 ggaaatgccttgcttttattagggagttgatatgtctgtttaaaatgctgtttggaacaa 955
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 50760686 ggaaatgccttg-ttttattagggatttgatatgtctgtttaaaatgctgtttggaacaa 50760744
Query: 956 taggtgtaaaattctgtaaaagaggcagaaactagccgtgtagatttgttggtgcatgtg 1015
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 50760745 taggtgtaaaattctgtaaaagaggcagaaactagccatgtagatttgttggtgcatgtg 50760804
Query: 1016 atgaaacctacagctttattgggggtgatgcaatgctctgctggtttactctaaaagtgg 1075
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 50760805 atgaaacctacggctttattgggggtgatgcaatgctctgctggtttactctgaaagtgg 50760864
Query: 1076 ctgatttatggagtttggcaaggagaaactaaattttgaattctcctttaaaa--tgtga 1133
|||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||
Sbjct: 50760865 ctgatttatggagtttggcaaggacaaactgtaaattgaattctcctttaaaaaatgtga 50760924
Query: 1134 aggatgtcctgatcctttatcatggtcatatgcagaaaaataatgaaagttgagtggggc 1193
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 50760925 aggatttcctgatcctttatcatgatcatatgcagaaaaataatgaaagttgagtgaggc 50760984
Query: 1194 ccacgtttcttaggcttgatctaatctgtttatataactgctgcttcaaaagggagaaat 1253
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50760985 ccaggttt-ttaggcttgatctaatctgtttatataactgctgcttcaaaagggagaaat 50761043
Query: 1254 gtaaaagaatgcaagcatttttaagagaattgaataaacctgttgcgagaggattctctt 1313
|||||||||||| | |||||||||||||||||||||||||| || | ||||||||| |||
Sbjct: 50761044 gtaaaagaatgccaccatttttaagagaattgaataaacctatttccagaggattcgctt 50761103
Query: 1314 aaaaatgaaaggaatcctggtaaacctaaact-----gccttggcctccatggtaaccat 1368
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||||
Sbjct: 50761104 aaaaatgaaaggaatcctggtaaacctaaattaaattgccttggcctccatggtt-ccat 50761162
Query: 1369 tgaagttcacataaaa----ggtggggtttgtggtttaatcccatgactccgatctgtag 1424
|||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct: 50761163 tgaagttcacataaaaaaaaggtgggatttgtggtttaatcccatgactcgaatctgtag 50761222
Query: 1425 catactgcaaagtagtcatggtatttacactggtgtacattgaaactgatggaaattgaa 1484
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 50761223 agtactgcaaagtagtcatggtatttacactcctatacattgaaactgatggaaattgaa 50761282
Query: 1485 cattaaatgagattggggttactagccttaagatttgtaagctagtaatgctaggtagga 1544
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 50761283 cattcaatgagattggggttactagccttaagatttgtaagctagaaatgctaggtagaa 50761342
Query: 1545 ttggggaattggtgtccatgagctatctttcaaatgttggaggacaggaaaaaacttata 1604
|| || |||||||||||||||| |||||||||| ||| |||||| ||||||||||||| |
Sbjct: 50761343 ttaggaaattggtgtccatgagatatctttcaagtgtgggaggataggaaaaaacttaga 50761402
Query: 1605 tcaaaattttaagtgttttatctgtagtattagtttgtgactattatgagctctctctaa 1664
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 50761403 tcaaagttttaaatgttttatctgtagtattagtttgtgactattatgaactctctctaa 50761462
Query: 1665 gccacc-tnnnnnnnnnnnataactgctaaatctaatcagtgttaaagttttctttggta 1723
|||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 50761463 gccaccttggggtggggggaatactgctaaatctaatcagtgttaaagttttctttggta 50761522
Query: 1724 aagccac--tatccattcccaaaaggctactgagaaaagtcatgtagttgatgtcaatac 1781
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50761523 aagccactttatccattcccaaaaggctactgagaaaagtcatgtagttgatgtcaatac 50761582
Query: 1782 aagttcatggtttccaatctaa 1803
|| ||||||||||||||||||
Sbjct: 50761583 aaactcatggtttccaatctaa 50761604
Score = 735 bits (371), Expect = 0.0
Identities = 615/690 (89%), Gaps = 11/690 (1%)
Strand = Plus / Minus
Query: 68 agccatcaggtaagccaagatgggcgcttacaagtacatccaggagctatggaggaagaa 127
||||||||| ||| |||| ||||||| | ||||| |||||||||||| |||||||||||
Sbjct: 69921255 agccatcagataaaccaaagtgggcgcctccaagttcatccaggagctgtggaggaagaa 69921196
Query: 128 gcagtccgacgtca-tgcgctttctcctc------cgggtgcgctgctggcagtaccgcc 180
||| ||| |||||| || ||||||||||| |||||||||||| |||||||| |
Sbjct: 69921195 gca-tccaacgtcaatgtgctttctcctctgggtgcgggtgcgctgccggcagtactgat 69921137
Query: 181 agctctccgctctccacagggccccccgccccacccggcccgataaggcgcgcaggctgg 240
|||||||||||||||||||||||||| || ||||| |||||||||||| | |||| ||||
Sbjct: 69921136 agctctccgctctccacagggccccc-gctccacctggcccgataaggtgagcagactgg 69921078
Query: 241 gatacaaggccaagcaaggttatgtcatatatcggattcgtgtgcgccgcggtggccgca 300
||||||||||||||||||||| || ||| |||| |||| ||||| ||| ||||||||||
Sbjct: 69921077 gatacaaggccaagcaaggttttgccatgtatcagatttgtgtgtgccatggtggccgca 69921018
Query: 301 aacgcccagttcctaagggtgccacctacggcaagcctgtccaccatggtgtcaaccagc 360
||| |||| ||||||||| ||||||||| |||||||||||||||||||| |||||||||
Sbjct: 69921017 aac-cccatttcctaagg-tgccacctatggcaagcctgtccaccatggcatcaaccagc 69920960
Query: 361 taaagtttgctcgaagccttcagtctgttgccgaggagcgagctggacgccactgtgggg 420
||||||||| | ||||||||||||| ||||| ||||| ||| |||| ||||||||||||
Sbjct: 69920959 taaagtttggttgaagccttcagtccattgccaaggagtgaggtggaagccactgtgggg 69920900
Query: 421 ctctgagagtcctgaattcttactgggttggtgaagattctacatacaaattctttgagg 480
||| ||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 69920899 ctccgagggtcccgaattcttactgggttggtgaagattctgcgtacaaattctttgagg 69920840
Query: 481 ttatcctcattgatccattccataaagctatcagaagaaatcctgacacccagtggatca 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 69920839 ttatcctcattgatccattccataaagctgtcagaagaaatcctgacacccagtggatca 69920780
Query: 541 ccaaaccagtccacaagcatagggagatgcgagggctgacttctgcaggcagaaagagcc 600
||| ||||||||||||||| ||||||| | ||||||||||||||||||| |||| |||||
Sbjct: 69920779 ccagaccagtccacaagcacagggagaggggagggctgacttctgcaggtagaaggagcc 69920720
Query: 601 gcggccttggaaagggccacaagttccaccacactattggtggttcccgccgtgcagctt 660
||||||||| ||||||||||||||||||||||||||||||| | || ||||||||
Sbjct: 69920719 acggccttgggttgggccacaagttccaccacactattggtggtacttgctctgcagctt 69920660
Query: 661 ggagaaggcgcaatactctccagctccaccgttaccgctaataagtaatgtttgtaaaat 720
||||||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct: 69920659 ggagaaggctcaatactctccagctccaccgttactgctaataagtcaagtttgtaaaat 69920600
Query: 721 tcttacctaataaacaatttaggacattca 750
||||||||||||||||||||||||||||||
Sbjct: 69920599 tcttacctaataaacaatttaggacattca 69920570
>Sscrofa_Chr14
|| Length = 153851969
Score = 1877 bits (947), Expect = 0.0
Identities = 1558/1757 (88%), Gaps = 40/1757 (2%)
Strand = Plus / Minus
Query: 52 ctttccgtctgtcggcagccatcaggtaagccaagatgggcgcttacaagtacatccagg 111
|||||| |||| |||||||||||| |||||| | |||||||| |||||||||||||| |
Sbjct: 112924943 ctttccatctggcggcagccatcaagtaagctgaaatgggcgcatacaagtacatccaag 112924884
Query: 112 agctatggaggaagaagcagtccgacgtcatgcgctttctcctccgggtgcgctgctggc 171
|||||||||||||||||||||| ||| | ||| |||||||||||| ||| ||||||||||
Sbjct: 112924883 agctatggaggaagaagcagtctgacataatgtgctttctcctccaggtacgctgctggc 112924824
Query: 172 agtaccgccagctctccgctctccacagggccccccgccccacccggcccgataaggcgc 231
|||||| |||||||||||| |||||||||| ||| |||||||||||||||| | ||
Sbjct: 112924823 agtaccaccagctctccgccttccacagggcaccctgccccacccggcccgacagagcaa 112924764
Query: 232 gcaggctgggatacaaggccaagcaaggttatgtcatatatcggattcgtgtgcgccgcg 291
| |||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||
Sbjct: 112924763 gtaggctggggtacaaggccaaggaaggttatgtcatatatcggatttgtgtgcaccgcg 112924704
Query: 292 gtggccgcaaacgcccagttcctaagggtgccacctacggcaagcctgtccaccatggtg 351
||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 112924703 gtggccgcaaatgcccagttcctaagggtgccaccaatggcaagcctgtccaccatggtg 112924644
Query: 352 tcaaccagctaaagtttgctcgaagccttcagtctgttgccgaggagcgagctggacgcc 411
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 112924643 tcaaccagctaaagtttgctcaaagccttcagtctgttgccgaggagcgagctggacacc 112924584
Query: 412 actgtggggctctgagagtcctgaattcttactgggttggtgaagattctacatacaaat 471
||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 112924583 actgtggggttctgaaggtcctgaattcttactgggttggtgaagattctatgtacaaat 112924524
Query: 472 tctttgaggttatcctcattgatccattccataaagctatcagaagaaatcctgacaccc 531
|| |||||| | |||||||||||| |||||||||||||||||||||
Sbjct: 112924523 tc---------------attgattccttccataaagctgtcagaagaaatcctgacaccc 112924479
Query: 532 agtggatcaccaaaccagtccacaagcatagggagatgcgagggctgacttctgcaggca 591
||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||
Sbjct: 112924478 agtggatcaccaaaccagttcacaagcatagggagatgtgagggctgaattctgcaggca 112924419
Query: 592 gaaagagccgcggccttggaaagggccacaagttccaccacactattggtggttcccgcc 651
|||||||||| ||||| | |||||||||||||||||||| |||||||||||||| |||
Sbjct: 112924418 gaaagagccgaggcctcgagaagggccacaagttccaccagactattggtggttctggcc 112924359
Query: 652 gtgcagcttggagaaggcgc-aatactctccagctccaccgttaccgctaat--aagtaa 708
||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||||
Sbjct: 112924358 atgcagcttggagaaggcgccaatactctccagctccaccattactgctaatccaagtaa 112924299
Query: 709 tgtttgtaaaattcttacctaataaacaatttaggacattcatgtctgcttaaaagtgtt 768
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 112924298 tgtttgtaaaattcttacctaataaacaattcaggacattcatgtctgcttagaagtgtt 112924239
Query: 769 ttttaatttgtctgttaaaactagttgtctgcagattgtttcattgaatgcattgtcaaa 828
||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct: 112924238 ttttaatttgtctgttaaaactagttgtctgcatattgtttcactgaatgcatggtcaaa 112924179
Query: 829 ttttgaaagttaaaagtgcaataatgtttgaagatcttaagtgatggtgtatcttgtttc 888
|||| ||||||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 112924178 ttttcaaagttaaa-gtacaataatgtttgaagattttaagtgacggtgtatcttgtttc 112924120
Query: 889 taataagggaaatgccttgcttttattagggagttgatatgtctgtttaaaatgctgttt 948
|||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 112924119 taataaaggaaatgccttgcttttattagggagctgat--gtctgtttaaaatgctgttt 112924062
Query: 949 ggaacaataggtgtaaaattctgtaaaagaggcagaaactagccgtgtagatttgttggt 1008
| || || |||||||||||||||||||||||||| ||||||||| || ||||||| ||||
Sbjct: 112924061 gcaataacaggtgtaaaattctgtaaaagaggcaaaaactagccatgcagatttgctggt 112924002
Query: 1009 gcatgtgatgaaacctacagctttattgggggtgatgcaatgctctgctggtttactcta 1068
||||||||||||||||||||||| | |||||||||||||||| |||||| |||||| ||
Sbjct: 112924001 gcatgtgatgaaacctacagcttcactgggggtgatgcaatggtctgctaatttacttta 112923942
Query: 1069 aaagtggctgattt-atggagtttggcaaggagaaactaaattttgaattctcctttaaa 1127
|||||||||| ||| ||||| || |||| ||| |||||| | ||||||||| |||||
Sbjct: 112923941 aaagtggctgtttttatggatttgggcagggacaaactataaattgaattct---ttaaa 112923885
Query: 1128 atgtgaaggatgtcctgatcctttatcatggtcatatgcagaaaaataatgaaagttgag 1187
|||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 112923884 atgtaaaggatgtcctaatccgttatcatgatcatatgcagaaaaataatgaaagttgac 112923825
Query: 1188 tggggcccacgtttcttaggcttgatctaatctgtttatataactgctgcttcaaaaggg 1247
|| |||||| |||| |||| ||| ||||||||||||||||||||||||| |||||||| |
Sbjct: 112923824 tgaggcccatgttt-ttagacttaatctaatctgtttatataactgctgattcaaaagtg 112923766
Query: 1248 agaaatgtaaaagaatgcaagcatttttaagagaattgaataaacctgttgcgagaggat 1307
||||| |||||||||||| | |||||||||||||| |||||||||||||| | |||||||
Sbjct: 112923765 agaaaagtaaaagaatgccaccatttttaagagaagtgaataaacctgttccaagaggat 112923706
Query: 1308 tctcttaaaaatgaaaggaatcctggtaaacctaaact-----gccttggcctccatggt 1362
|||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct: 112923705 tctcttaaaa-tgaaatgaatcctggtaaacctaaattaaattgccttggcctccatggt 112923647
Query: 1363 aaccattgaagttcacataaaaggtggggtttgtggtttaatcccatgactccgatctgt 1422
| ||| ||||| ||||||||||||||| ||||||||| |||||||||| || |||||||
Sbjct: 112923646 a-ccactgaaggtcacataaaaggtggaatttgtggttcaatcccatgattcagatctgt 112923588
Query: 1423 agcatactgcaaagtagtcatggtatttacactggtgtacattgaaactgatggaaattg 1482
|| |||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||
Sbjct: 112923587 agaatactgcaaagtagtcatggtatttatactggtatatactgaaactgatggaaactg 112923528
Query: 1483 aacattaaatgagattggggttactagccttaagatttgtaagctagtaatgctaggtag 1542
||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 112923527 aacattaaatgagatgagggttactagccttaaggtttgtaagctagtaatgataggtag 112923468
Query: 1543 gattggggaattggtgtccatgagctatctttcaaatgttggaggacaggaaaaaactta 1602
||||||| |||||||||||||||| || ||||||| ||| |||||| |||||||||||||
Sbjct: 112923467 gattgggaaattggtgtccatgagatacctttcaagtgtgggaggataggaaaaaactta 112923408
Query: 1603 tatcaaaattttaagtgttttatctgtagtattagtttgtgactattatgagctctctct 1662
||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||
Sbjct: 112923407 gatcaaaattttaaatgttttat-----gtattagtttgtgactataatgaactctctct 112923353
Query: 1663 aagccacctnnnnnnnnnnnataactgctaaatctaatcagtgttaaagttttctttggt 1722
||||||||| | |||||||| ||||||||||| || ||||||||||||
Sbjct: 112923352 aagccaccttggggggggggaatactgctaagtctaatcagtggtactgttttctttggt 112923293
Query: 1723 aaagccac--tatccattcccaaaaggctactgagaaaagtcatgtagttgatgtcaata 1780
|| ||||| ||| || | ||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 112923292 aacgccactttatgcaataccatacggctactgagaaaagtcatgtagctgatgtcaata 112923233
Query: 1781 caagttcatggtttcca 1797
|| |||||||||||||
Sbjct: 112923232 aaatttcatggtttcca 112923216
>Sscrofa_Chr15
|| Length = 157681621
Score = 414 bits (209), Expect = e-113
Identities = 233/241 (96%)
Strand = Plus / Minus
Query: 509 tatcagaagaaatcctgacacccagtggatcaccaaaccagtccacaagcatagggagat 568
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 66337393 tatcagaagaaatcctgacacccagtgggtcaccaaaccagtccacaagcatagggagat 66337334
Query: 569 gcgagggctgacttctgcaggcagaaagagccgcggccttggaaagggccacaagttcca 628
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 66337333 gtgagggctgacttctgcaggcagaaagagccgcagccttggaaagggccacaagttcca 66337274
Query: 629 ccacactattggtggttcccgccgtgcagcttggagaaggcgcaatactctccagctcca 688
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 66337273 ccacactattggtggttcccgccgtgcagcttggagaaggcacaatactctcaagctcca 66337214
Query: 689 ccgttaccgctaataagtaatgtttgtaaaattcttacctaataaacaatttaggacatt 748
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 66337213 ccgttaccactaataagaaatgtttgtaaaattcttacctaataaacaatttaagacatt 66337154
Query: 749 c 749
|
Sbjct: 66337153 c 66337153
>gb|JH118540.1| Sus scrofa unplaced genomic scaffold ChrUScaf909
Length = 56020
Score = 383 bits (193), Expect = e-103
Identities = 367/419 (87%), Gaps = 7/419 (1%)
Strand = Plus / Minus
Query: 1686 actgctaaatctaatcag-tgttaaa-gttttctttggtaaagccact--atccattccc 1741
|||||||| ||||||||| ||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 2966 actgctaagtctaatcaggtgttaaaagttttcttgggtaaagccactttatccattccc 2907
Query: 1742 aaaaggctactgagaaaagtcatgtagttgatgtcaatacaagttcatggtttccaatct 1801
| | |||| |||||||||||||||| |||| |||||||||||||||||||||||||| ||
Sbjct: 2906 atatggctgctgagaaaagtcatgtggttggtgtcaatacaagttcatggtttccaacct 2847
Query: 1802 aactttatgtgttgtctacagttatttttctaattcctgttcaaactccccttaagatcc 1861
||||| ||||||||||| |||||||||||| || ||| |||||||||||||| |||||
Sbjct: 2846 aacttcttgtgttgtctatagttatttttctcatcccttctcaaactccccttatgatcc 2787
Query: 1862 tcaccattccacacactagccaggccattaattgtgcccaccttagtgtttggcatacca 1921
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2786 tcaccattccacacacttgccaggccattaattgtgcccaccttagtgtctggcatacca 2727
Query: 1922 caacatcctgttggcattttgtcttctagtggactaggcctctgtctcccagggtggatt 1981
||| ||||||| |||| ||||||||| || ||||||| |||| |||||||| ||||
Sbjct: 2726 caatgtcctgttagcatcctgtcttctactgaactaggcttctgctacccagggtagatt 2667
Query: 1982 tgagtgtgtaggaaatatggaagaggaatcaccccaattctgtccagttcttggtttgc- 2040
|||||||| ||||| |||||||||| ||| |||||||||||| || |||||||| ||
Sbjct: 2666 tgagtgtgcaggaattatggaagagcaattgccccaattctgttcaactcttggttggct 2607
Query: 2041 -tctcagtaggtaattttgaaatataatggctggttttccctgaaccaatttttctcat 2098
||| | || || ||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 2606 atcttaataagtgattttgaaatataattgctgg-tttccttgaaccaatttttctcat 2549
Score = 141 bits (71), Expect = 2e-30
Identities = 143/163 (87%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 1115 attctcctttaaaatgtgaaggatgtcctgatcctttatcatggtcatatgcagaaaaat 1174
||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 3749 attctccttaaaaatgtgaaagatgtcctaatcctttatcatgatcatatgcagaaaaat 3690
Query: 1175 aatgaaagttgagtggggcccacgtttcttaggctt-gatctaatctgtttatataactg 1233
|||||||||||| | |||||||| ||| |||| ||| |||||||| ||||| ||||||
Sbjct: 3689 aatgaaagttgactagggcccacattt-ttagacttaaatctaatccatttatgtaactg 3631
Query: 1234 ctgctt-caaaagggagaaatgtaaaagaatgcaagcattttt 1275
|||||| ||||||| ||||| |||||||| ||| | |||||||
Sbjct: 3630 ctgcttccaaaaggaagaaaagtaaaagactgccaccattttt 3588
Score = 107 bits (54), Expect = 2e-20
Identities = 175/213 (82%), Gaps = 13/213 (6%)
Strand = Plus / Minus
Query: 1437 tagtcatggtatttacactggtgtacattgaaactgatggaaattgaacattaa----at 1492
|||||||||| |||||||||| | ||||||||||||||||| |||||||||| ||
Sbjct: 3195 tagtcatggtgtttacactggcagatattgaaactgatggaaactgaacattaagtaaat 3136
Query: 1493 gagattggggttactagccttaagatttgtaagctagtaatgctaggtaggattggggaa 1552
|||| ||||||||||||| |||| ||||||| |||||||||| | |||| ||
Sbjct: 3135 gagacaggggttactagccgtaaggtttgtaaa----taatgctagg----actgggaaa 3084
Query: 1553 ttggtgtccatgagctatctttcaaatgttggaggacaggaaaaaacttatatcaaaatt 1612
|||||||||||||| || ||||||| ||| |||||| | |||||| || || ||||||
Sbjct: 3083 ttggtgtccatgagatacctttcaagtgtgggaggataa-aaaaaatgtagataaaaatt 3025
Query: 1613 ttaagtgttttatctgtagtattagtttgtgac 1645
|||| |||||||||||||||| |||||||||||
Sbjct: 3024 ttaaatgttttatctgtagtactagtttgtgac 2992
Score = 89.7 bits (45), Expect = 6e-15
Identities = 104/121 (85%), Gaps = 7/121 (5%)
Strand = Plus / Minus
Query: 1269 catttttaagagaattgaataaacctgttgcgagaggattctcttaaaaatgaaaggaat 1328
||||||||||||||||||||||||| || || | | ||||||||||||||||||| |||
Sbjct: 3345 catttttaagagaattgaataaacc-gtggcaaaaagattctcttaaaaatgaaacaaat 3287
Query: 1329 cctggtaaacctaaa-----ctgccttggcctccatggtaaccattgaagttcacataaa 1383
|| ||| ||| |||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct: 3286 ccaggttaacataaattaacctgccttggcctccatggt-accattgaagttgacataaa 3228
Query: 1384 a 1384
|
Sbjct: 3227 a 3227
>Sscrofa_Chr09
|| Length = 153670197
Score = 383 bits (193), Expect = e-103
Identities = 367/419 (87%), Gaps = 7/419 (1%)
Strand = Plus / Minus
Query: 1686 actgctaaatctaatcag-tgttaaa-gttttctttggtaaagccact--atccattccc 1741
|||||||| ||||||||| ||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 76905201 actgctaagtctaatcaggtgttaaaagttttcttgggtaaagccactttatccattccc 76905142
Query: 1742 aaaaggctactgagaaaagtcatgtagttgatgtcaatacaagttcatggtttccaatct 1801
| | |||| |||||||||||||||| |||| |||||||||||||||||||||||||| ||
Sbjct: 76905141 atatggctgctgagaaaagtcatgtggttggtgtcaatacaagttcatggtttccaacct 76905082
Query: 1802 aactttatgtgttgtctacagttatttttctaattcctgttcaaactccccttaagatcc 1861
||||| ||||||||||| |||||||||||| || ||| |||||||||||||| |||||
Sbjct: 76905081 aacttcttgtgttgtctatagttatttttctcatcccttctcaaactccccttatgatcc 76905022
Query: 1862 tcaccattccacacactagccaggccattaattgtgcccaccttagtgtttggcatacca 1921
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 76905021 tcaccattccacacacttgccaggccattaattgtgcccaccttagtgtctggcatacca 76904962
Query: 1922 caacatcctgttggcattttgtcttctagtggactaggcctctgtctcccagggtggatt 1981
||| ||||||| |||| ||||||||| || ||||||| |||| |||||||| ||||
Sbjct: 76904961 caatgtcctgtttgcatcctgtcttctactgaactaggcttctgctacccagggtagatt 76904902
Query: 1982 tgagtgtgtaggaaatatggaagaggaatcaccccaattctgtccagttcttggtttgc- 2040
|||||||| ||||| |||||||||| ||| |||||||||||| || |||||||| ||
Sbjct: 76904901 tgagtgtgcaggaattatggaagagcaattgccccaattctgttcaactcttggttggct 76904842
Query: 2041 -tctcagtaggtaattttgaaatataatggctggttttccctgaaccaatttttctcat 2098
||| | || || ||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct: 76904841 atcttaataagtgattttgaaatataattgctgg-tttccttgaaccaatttttctcat 76904784
Score = 141 bits (71), Expect = 2e-30
Identities = 143/163 (87%), Gaps = 3/163 (1%)
Strand = Plus / Minus
Query: 1115 attctcctttaaaatgtgaaggatgtcctgatcctttatcatggtcatatgcagaaaaat 1174
||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 76905984 attctccttaaaaatgtgaaagatgtcctaatcctttatcatgatcatatgcagaaaaat 76905925
Query: 1175 aatgaaagttgagtggggcccacgtttcttaggctt-gatctaatctgtttatataactg 1233
|||||||||||| | |||||||| ||| |||| ||| |||||||| ||||| ||||||
Sbjct: 76905924 aatgaaagttgactagggcccacattt-ttagacttaaatctaatccatttatgtaactg 76905866
Query: 1234 ctgctt-caaaagggagaaatgtaaaagaatgcaagcattttt 1275
|||||| ||||||| ||||| |||||||| ||| | |||||||
Sbjct: 76905865 ctgcttccaaaaggaagaaaagtaaaagactgccaccattttt 76905823
Score = 107 bits (54), Expect = 2e-20
Identities = 175/213 (82%), Gaps = 13/213 (6%)
Strand = Plus / Minus
Query: 1437 tagtcatggtatttacactggtgtacattgaaactgatggaaattgaacattaa----at 1492
|||||||||| |||||||||| | ||||||||||||||||| |||||||||| ||
Sbjct: 76905430 tagtcatggtgtttacactggcagatattgaaactgatggaaactgaacattaagtaaat 76905371
Query: 1493 gagattggggttactagccttaagatttgtaagctagtaatgctaggtaggattggggaa 1552
|||| ||||||||||||| |||| ||||||| |||||||||| | |||| ||
Sbjct: 76905370 gagacaggggttactagccgtaaggtttgtaaa----taatgctagg----actgggaaa 76905319
Query: 1553 ttggtgtccatgagctatctttcaaatgttggaggacaggaaaaaacttatatcaaaatt 1612
|||||||||||||| || ||||||| ||| |||||| | |||||| || || ||||||
Sbjct: 76905318 ttggtgtccatgagatacctttcaagtgtgggaggataa-aaaaaatgtagataaaaatt 76905260
Query: 1613 ttaagtgttttatctgtagtattagtttgtgac 1645
|||| |||||||||||||||| |||||||||||
Sbjct: 76905259 ttaaatgttttatctgtagtactagtttgtgac 76905227
Score = 89.7 bits (45), Expect = 6e-15
Identities = 104/121 (85%), Gaps = 7/121 (5%)
Strand = Plus / Minus
Query: 1269 catttttaagagaattgaataaacctgttgcgagaggattctcttaaaaatgaaaggaat 1328
||||||||||||||||||||||||| || || | | ||||||||||||||||||| |||
Sbjct: 76905580 catttttaagagaattgaataaacc-gtggcaaaaagattctcttaaaaatgaaacaaat 76905522
Query: 1329 cctggtaaacctaaa-----ctgccttggcctccatggtaaccattgaagttcacataaa 1383
|| ||| ||| |||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct: 76905521 ccaggttaacataaattaacctgccttggcctccatggt-accattgaagttgacataaa 76905463
Query: 1384 a 1384
|
Sbjct: 76905462 a 76905462
>Sscrofa_ChrY
|| Length = 1637716
Score = 305 bits (154), Expect = 5e-80
Identities = 383/455 (84%), Gaps = 7/455 (1%)
Strand = Plus / Minus
Query: 298 gcaaacgcccagttcctaagggtgccacctacggcaagcctgtccaccatggtgtcaacc 357
||||| ||||| |||||||| ||| || ||| ||||||| ||||||| | ||||||||||
Sbjct: 54313 gcaaatgcccatttcctaagtgtgacatctatggcaagcatgtccactagggtgtcaacc 54254
Query: 358 agctaaagtttgctcgaagccttcagtctgttgccgaggagcgagctggacg-ccactgt 416
| |||||||||| | || |||||| |||||||| |||||| ||| || | | || |||
Sbjct: 54253 atctaaagtttgttaaaaaccttcaatctgttgctgaggagtgagttgaatgtcccttgt 54194
Query: 417 ggggctctgagagtcctgaattcttactgggttggtgaagattctacatacaaattcttt 476
| ||||||||| | |||||||| |||||| |||||||||||| ||| |||||||| |||
Sbjct: 54193 gtggctctgagtgccctgaattgttactgtgttggtgaagatgctaagtacaaattattt 54134
Query: 477 gaggttatcctcattgatccattccataaagctatcagaagaaatcctgacacccagtgg 536
|| |||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||| ||
Sbjct: 54133 gaagttatcctcattgacccattccataaagctatcagaagtaattctgacactcagagg 54074
Query: 537 atcaccaaaccagtccacaagcatagggagatgcgagggctgacttctgcaggcagaaag 596
||||||||| ||||||||||| | || |||||| ||||||| ||| ||| ||||||||||
Sbjct: 54073 atcaccaaagcagtccacaagtacagtgagatgtgagggcttactgctgtaggcagaaag 54014
Query: 597 agccgcggccttggaaagggccacaagttccaccacactattggtggttcccgccgtgca 656
|||| |||||| | |||||||||||||||| |||||||||||| |||| || |||
Sbjct: 54013 agccatggccttaggaagggccacaagttccgtcacactattggttgttcttgctgtggg 53954
Query: 657 gcttggagaaggcgcaatactctccagctcca-ccgttaccgcta--ataagtaatgttt 713
||||||||||||| ||| ||||| |||||||| || |||| |||| ||||||||||
Sbjct: 53953 gcttggagaaggcacaacactcttcagctccacccattactgctaatataagtaatg--- 53897
Query: 714 gtaaaattcttacctaataaacaatttaggacatt 748
|||||||||| ||||||| | ||||||||||||||
Sbjct: 53896 gtaaaattctcacctaatgagcaatttaggacatt 53862
Score = 305 bits (154), Expect = 5e-80
Identities = 383/455 (84%), Gaps = 7/455 (1%)
Strand = Plus / Plus
Query: 298 gcaaacgcccagttcctaagggtgccacctacggcaagcctgtccaccatggtgtcaacc 357
||||| ||||| |||||||| ||| || ||| ||||||| ||||||| | ||||||||||
Sbjct: 259184 gcaaatgcccatttcctaagtgtgacatctatggcaagcatgtccactagggtgtcaacc 259243
Query: 358 agctaaagtttgctcgaagccttcagtctgttgccgaggagcgagctggacg-ccactgt 416
| |||||||||| | || |||||| |||||||| |||||| ||| || | | || |||
Sbjct: 259244 atctaaagtttgttaaaaaccttcaatctgttgctgaggagtgagttgaatgtcccttgt 259303
Query: 417 ggggctctgagagtcctgaattcttactgggttggtgaagattctacatacaaattcttt 476
| ||||||||| | |||||||| |||||| |||||||||||| ||| |||||||| |||
Sbjct: 259304 gtggctctgagtgccctgaattgttactgtgttggtgaagatgctaagtacaaattattt 259363
Query: 477 gaggttatcctcattgatccattccataaagctatcagaagaaatcctgacacccagtgg 536
|| |||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||| ||
Sbjct: 259364 gaagttatcctcattgacccattccataaagctatcagaagtaattctgacactcagagg 259423
Query: 537 atcaccaaaccagtccacaagcatagggagatgcgagggctgacttctgcaggcagaaag 596
||||||||| ||||||||||| | || |||||| ||||||| ||| ||| ||||||||||
Sbjct: 259424 atcaccaaagcagtccacaagtacagtgagatgtgagggcttactgctgtaggcagaaag 259483
Query: 597 agccgcggccttggaaagggccacaagttccaccacactattggtggttcccgccgtgca 656
|||| |||||| | |||||||||||||||| |||||||||||| |||| || |||
Sbjct: 259484 agccatggccttaggaagggccacaagttccgtcacactattggttgttcttgctgtggg 259543
Query: 657 gcttggagaaggcgcaatactctccagctcca-ccgttaccgcta--ataagtaatgttt 713
||||||||||||| ||| ||||| |||||||| || |||| |||| ||||||||||
Sbjct: 259544 gcttggagaaggcacaacactcttcagctccacccattactgctaatataagtaatg--- 259600
Query: 714 gtaaaattcttacctaataaacaatttaggacatt 748
|||||||||| ||||||| | ||||||||||||||
Sbjct: 259601 gtaaaattctcacctaatgagcaatttaggacatt 259635
>Sscrofa_Chr05
|| Length = 111506441
Score = 264 bits (133), Expect = 2e-67
Identities = 262/303 (86%), Gaps = 4/303 (1%)
Strand = Plus / Minus
Query: 429 gtcctgaattcttactgggttggtgaagattctacatacaaattctttgaggttatcctc 488
||||| ||||||||||| |||||||||| ||||| |||||||||| |||||||||||||
Sbjct: 5017296 gtcctaaattcttactgagttggtgaagcttctatgtacaaattctctgaggttatcctc 5017237
Query: 489 attgatccattccataaagctatcagaagaaatcctgacacccagtggatcaccaaacca 548
||||||||||||||||||||||| |||||||||||||||||||| |||| || |||||||
Sbjct: 5017236 attgatccattccataaagctatgagaagaaatcctgacacccaatggagcatcaaacca 5017177
Query: 549 gtccacaagcatagggagatgcgagggctgacttctgcaggcagaaagagccgcggcctt 608
||| ||||||| ||||||||||||||||||||| ||| |||||||||||| | |||||
Sbjct: 5017176 gtctacaagcacagggagatgcgagggctgact--tgctggcagaaagagctgtggcctc 5017119
Query: 609 ggaaagggccacaagttccaccacactattggtggttcccgccgtgcagcttggagaagg 668
| ||||||| ||||||||||||||||| | ||||||| |||| ||||||| |||||
Sbjct: 5017118 gagaagggcctcaagttccaccacactacttgtggttctcgccacacagcttgaagaaga 5017059
Query: 669 cgcaatactctccagctccaccgttaccgctaat--aagtaatgtttgtaaaattcttac 726
|||||| ||||| || ||||| ||| ||| || ||||| ||||| ||||||||||||
Sbjct: 5017058 tgcaatagtctcctacttcaccgatactgctgatacaagtactgtttataaaattcttac 5016999
Query: 727 cta 729
|||
Sbjct: 5016998 cta 5016996
Score = 87.7 bits (44), Expect = 2e-14
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 716 aaaattcttacctaataaacaatttaggacattcatgtctgcttaaaa 763
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5016800 aaaattcttacctaataaacaatataggacattcatgtctgcttaaaa 5016753
Score = 85.7 bits (43), Expect = 9e-14
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 52 ctttccgtctgtcggcagccatcaggtaagccaagatgggcgcttacaagtacatccagg 111
|||||| |||| |||||||||||| ||||||| |||||||||| ||| |||| ||||||
Sbjct: 5017599 ctttccatctggcggcagccatcatgtaagccgagatgggcgcctacgcgtacctccagg 5017540
Query: 112 agctatggaggaaga 126
|||||||||||||||
Sbjct: 5017539 agctatggaggaaga 5017525
Score = 79.8 bits (40), Expect = 6e-12
Identities = 77/87 (88%), Gaps = 3/87 (3%)
Strand = Plus / Minus
Query: 312 cctaagggtgccacctacggcaagcctgtccacc--atggtgtcaaccagctaaagtttg 369
||||||||||||||| | |||||||||||||||| |||||||||||||||| |||| ||
Sbjct: 5017381 cctaagggtgccacc-atggcaagcctgtccaccccatggtgtcaaccagctgaagtctg 5017323
Query: 370 ctcgaagccttcagtctgttgccgagg 396
| ||||||||| ||||| ||||||||
Sbjct: 5017322 cccgaagccttgagtctactgccgagg 5017296
>gb|GL894777.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3408
Length = 82444
Score = 147 bits (74), Expect = 3e-32
Identities = 137/158 (86%)
Strand = Plus / Minus
Query: 224 taaggcgcgcaggctgggatacaaggccaagcaaggttatgtcatatatcggattcgtgt 283
|||||| |||||| |||| | |||||||||| ||||||| ||||| ||| ||||| |
Sbjct: 31106 taaggcacgcaggatggggcataaggccaagcgaggttatctcatacatcagattcaaat 31047
Query: 284 gcgccgcggtggccgcaaacgcccagttcctaagggtgccacctacggcaagcctgtcca 343
|| || || ||||| ||||| |||||||||||||||||||||||| || || ||||||||
Sbjct: 31046 gcaccacgatggccccaaacacccagttcctaagggtgccacctatggtaaacctgtcca 30987
Query: 344 ccatggtgtcaaccagctaaagtttgctcgaagccttc 381
|||||||||||||||||||||||||||| |||||||||
Sbjct: 30986 ccatggtgtcaaccagctaaagtttgctggaagccttc 30949
>Sscrofa_Chr03
|| Length = 144787322
Score = 101 bits (51), Expect = 2e-18
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 670 gcaatactctccagctccaccgttaccgctaata--agtaatgtttgtaaaattcttacc 727
||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 130034481 gcaatactctccagctctgccgttactgctaatataagtaatgtttgtaaaattcttacg 130034540
Query: 728 taataaacaatttaggacattc 749
|| |||||||||||||||||||
Sbjct: 130034541 tagtaaacaatttaggacattc 130034562
Score = 89.7 bits (45), Expect = 6e-15
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 1747 gctactgagaaaagtcatgtagttgatgtcaatacaagttcatggtttccaat 1799
||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 68644870 gctactgagaaaagtcatgtagttgatgtcaatacaagttcattgttttcaat 68644922
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 68,894,253
Number of extensions: 580
Number of successful extensions: 580
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 43
Length of query: 2105
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2083
Effective length of database: 2,808,408,574
Effective search space: 5849915059642
Effective search space used: 5849915059642
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)