Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000333
(1311 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071297.1| lysozyme C, milk isozyme precursor [Bos taur... 209 4e-54
Alignment gi|NP_001071627.1| lysozyme C, non-stomach isozyme precursor [B... 205 6e-53
Alignment gi|NP_001073808.1| lysozyme C-1 precursor [Bos taurus]. 190 3e-48
Alignment gi|NP_776529.1| lysozyme C-3 precursor [Bos taurus]. 189 5e-48
Alignment gi|NP_001076861.1| GPN-loop GTPase 1 [Bos taurus]. 189 6e-48
Alignment gi|NP_851342.1| lysozyme C-2 precursor [Bos taurus]. 189 6e-48
Alignment gi|XP_002687434.1| PREDICTED: lysozyme 14D [Bos taurus]. 179 4e-45
Alignment gi|XP_001252825.3| PREDICTED: lysozyme 14D [Bos taurus]. 179 4e-45
Alignment gi|NP_001007806.1| lysozyme C, intestinal isozyme precursor [Bo... 178 8e-45
Alignment gi|NP_001073805.1| lysozyme C, tracheal isozyme precursor [Bos ... 176 3e-44
>ref|NP_001071297.1| lysozyme C, milk isozyme precursor [Bos taurus].
Length = 148
Score = 209 bits (532), Expect = 4e-54
Identities = 92/132 (69%), Positives = 110/132 (83%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q K + RCE AR LKK G+DGYRGVSLANWVCLA+WES++NT+A N+N G STDYGIFQ
Sbjct: 17 QGKKFQRCELARTLKKLGLDGYRGVSLANWVCLARWESNYNTRATNYNRGDKSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INSR+WCNDGKTPKAVNAC I C LL DD++Q + CAKRVVRDP G+KAWVAWR CQN
Sbjct: 77 INSRWWCNDGKTPKAVNACRIPCSALLKDDITQAVACAKRVVRDPQGIKAWVAWRNKCQN 136
Query: 736 KDVSQYIRGCKL 771
+D+ Y++GC++
Sbjct: 137 RDLRSYVQGCRV 148
>ref|NP_001071627.1| lysozyme C, non-stomach isozyme precursor [Bos taurus].
Length = 148
Score = 205 bits (522), Expect = 6e-53
Identities = 87/130 (66%), Positives = 110/130 (84%), Gaps = 2/130 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q KV++RCE AR LK+ GMD +RG+SLANW+CLA+WES++NT+A N+N G STDYGIFQ
Sbjct: 17 QGKVFERCELARSLKRFGMDNFRGISLANWMCLARWESNYNTQATNYNAGDQSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS +WCNDGKTP AVNACH+ C LL DD++Q + CAKRVV DP G++AWVAWR+HCQN
Sbjct: 77 INSHWWCNDGKTPGAVNACHLPCGALLQDDITQAVACAKRVVSDPQGIRAWVAWRSHCQN 136
Query: 736 KDVSQYIRGC 765
+D++ YI+GC
Sbjct: 137 QDLTSYIQGC 146
>ref|NP_001073808.1| lysozyme C-1 precursor [Bos taurus].
Length = 147
Score = 190 bits (482), Expect = 3e-48
Identities = 80/132 (60%), Positives = 108/132 (81%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N G STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPGSESTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS++WCNDGKTP AV+ CH+SC L+++++++ + CAK++V + G+ AWVAW++HC++
Sbjct: 77 INSKWWCNDGKTPNAVDGCHVSCSELMENEIAKAVACAKQIVSEQ-GITAWVAWKSHCRD 135
Query: 736 KDVSQYIRGCKL 771
DVS Y+ GC L
Sbjct: 136 HDVSSYVEGCTL 147
>ref|NP_776529.1| lysozyme C-3 precursor [Bos taurus].
Length = 147
Score = 189 bits (480), Expect = 5e-48
Identities = 80/132 (60%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS++WCNDGKTP AV+ CH+SC L+++D+++ + CAK +V + G+ AWVAW++HC++
Sbjct: 77 INSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSEQ-GITAWVAWKSHCRD 135
Query: 736 KDVSQYIRGCKL 771
DVS Y++GC L
Sbjct: 136 HDVSSYVQGCTL 147
>ref|NP_001076861.1| GPN-loop GTPase 1 [Bos taurus].
Length = 373
Score = 189 bits (479), Expect = 6e-48
Identities = 92/100 (92%), Positives = 95/100 (95%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAP +AT QASGGPR PACLLVLGMAGSGKTTFVQRLTG+LHSQG PPYVINLDPAVH
Sbjct: 1 MAAPASATESQASGGPRPPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVH 60
Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100
>ref|NP_851342.1| lysozyme C-2 precursor [Bos taurus].
Length = 147
Score = 189 bits (479), Expect = 6e-48
Identities = 80/132 (60%), Positives = 106/132 (80%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS++WCNDGKTP AV+ CH+SC L+++D+++ + CAK +V + G+ AWVAW++HC++
Sbjct: 77 INSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSEQ-GITAWVAWKSHCRD 135
Query: 736 KDVSQYIRGCKL 771
DVS Y+ GC L
Sbjct: 136 HDVSSYVEGCTL 147
>ref|XP_002687434.1| PREDICTED: lysozyme 14D [Bos taurus].
Length = 147
Score = 179 bits (455), Expect = 4e-45
Identities = 79/132 (59%), Positives = 105/132 (79%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q K ++RCE AR LK G+ GY+GVSLANW+CLAK ES +NT+A N++ G STDYGIFQ
Sbjct: 17 QGKTFERCELARTLKNLGLAGYKGVSLANWMCLAKGESGYNTQAKNYSPGFKSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS++WCNDGKTPKAVN C +SC LL DD++Q + CAK++V LG+ AWVAW+ CQN
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIV-SQLGLTAWVAWKNKCQN 135
Query: 736 KDVSQYIRGCKL 771
+D++ Y++GC++
Sbjct: 136 RDLTSYVQGCRV 147
>ref|XP_001252825.3| PREDICTED: lysozyme 14D [Bos taurus].
Length = 147
Score = 179 bits (455), Expect = 4e-45
Identities = 79/132 (59%), Positives = 105/132 (79%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q K ++RCE AR LK G+ GY+GVSLANW+CLAK ES +NT+A N++ G STDYGIFQ
Sbjct: 17 QGKTFERCELARTLKNLGLAGYKGVSLANWMCLAKGESGYNTQAKNYSPGFKSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS++WCNDGKTPKAVN C +SC LL DD++Q + CAK++V LG+ AWVAW+ CQN
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIV-SQLGLTAWVAWKNKCQN 135
Query: 736 KDVSQYIRGCKL 771
+D++ Y++GC++
Sbjct: 136 RDLTSYVQGCRV 147
>ref|NP_001007806.1| lysozyme C, intestinal isozyme precursor [Bos taurus].
Length = 147
Score = 178 bits (452), Expect = 8e-45
Identities = 79/132 (59%), Positives = 102/132 (77%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQ 555
Q K +++CE AR L++ G+DGY+GVSLANW+CL ES +NT+ N+N GS TDYGIFQ
Sbjct: 17 QGKKFEKCELARTLRRYGLDGYKGVSLANWMCLTYGESRYNTRVTNYNPGSKSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS++WCNDGKTPKAVN C +SC +L DD++Q + CAK +V G+ AWVAW+ C+N
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSAMLKDDITQAVACAKTIV-SRQGITAWVAWKNKCRN 135
Query: 736 KDVSQYIRGCKL 771
+DVS YIRGCKL
Sbjct: 136 RDVSSYIRGCKL 147
>ref|NP_001073805.1| lysozyme C, tracheal isozyme precursor [Bos taurus].
Length = 147
Score = 176 bits (447), Expect = 3e-44
Identities = 77/130 (59%), Positives = 102/130 (78%), Gaps = 2/130 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQ 555
Q K + RCE A+ LK G+ GY+GVSLANW+CLAK ES++NT+A N+N GS TDYGIFQ
Sbjct: 17 QGKTFKRCELAKTLKNLGLAGYKGVSLANWMCLAKGESNYNTQAKNYNPGSKSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INS++WCNDGKTPKAVN C +SC LL DD++Q + CAK++V G+ AWVAW+ C+N
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIVSQQ-GITAWVAWKNKCRN 135
Query: 736 KDVSQYIRGC 765
+D++ Y++GC
Sbjct: 136 RDLTSYVKGC 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,998,001
Number of extensions: 1160518
Number of successful extensions: 3541
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3494
Number of HSP's successfully gapped: 23
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000333
(1311 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531672.1| PREDICTED: similar to lysozyme precursor [Canis... 218 1e-56
Alignment gi|XP_532914.2| PREDICTED: similar to XPA binding protein 1 iso... 185 7e-47
Alignment gi|XP_850597.1| PREDICTED: similar to XPA binding protein 1 iso... 185 7e-47
Alignment gi|XP_861696.1| PREDICTED: similar to XPA binding protein 1 iso... 185 7e-47
Alignment gi|XP_850503.1| PREDICTED: similar to XPA binding protein 1 iso... 185 7e-47
Alignment gi|XP_853270.1| PREDICTED: similar to XPA binding protein 1 [Ca... 165 8e-41
Alignment gi|XP_851313.1| PREDICTED: similar to lysozyme [Canis familiari... 165 1e-40
Alignment gi|NP_001184016.1| sperm acrosome membrane-associated protein 3... 142 7e-34
Alignment gi|XP_538021.2| PREDICTED: similar to PNPK6288 [Canis familiari... 137 2e-32
Alignment gi|XP_544211.2| PREDICTED: similar to lysozyme-like protein 2 [... 134 2e-31
>ref|XP_531672.1| PREDICTED: similar to lysozyme precursor [Canis familiaris].
Length = 148
Score = 218 bits (555), Expect = 1e-56
Identities = 97/146 (66%), Positives = 115/146 (78%), Gaps = 2/146 (1%)
Frame = +1
Query: 334 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 513
MKT Q K+++RCE AR LK G+ GY+GVSLANWVCLAKWES++NT+A
Sbjct: 1 MKTLLFLGLLLLSITVQGKIFERCELARTLKNLGLAGYKGVSLANWVCLAKWESNYNTRA 60
Query: 514 INHNVGS--TDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRD 687
N+N GS TDYGIFQINSRYWCNDGKTP+AVNACHISC LL DD++Q + CAKRVV D
Sbjct: 61 TNYNPGSKSTDYGIFQINSRYWCNDGKTPRAVNACHISCSALLQDDITQAVACAKRVVSD 120
Query: 688 PLGVKAWVAWRAHCQNKDVSQYIRGC 765
P G++AWVAWRAHC+N+DVSQY+R C
Sbjct: 121 PNGIRAWVAWRAHCENRDVSQYVRNC 146
>ref|XP_532914.2| PREDICTED: similar to XPA binding protein 1 isoform 1 [Canis
familiaris].
Length = 288
Score = 185 bits (470), Expect = 7e-47
Identities = 89/100 (89%), Positives = 93/100 (93%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100
>ref|XP_850597.1| PREDICTED: similar to XPA binding protein 1 isoform 2 [Canis
familiaris].
Length = 374
Score = 185 bits (470), Expect = 7e-47
Identities = 89/100 (89%), Positives = 93/100 (93%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100
>ref|XP_861696.1| PREDICTED: similar to XPA binding protein 1 isoform 6 [Canis
familiaris].
Length = 288
Score = 185 bits (470), Expect = 7e-47
Identities = 89/100 (89%), Positives = 93/100 (93%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100
>ref|XP_850503.1| PREDICTED: similar to XPA binding protein 1 isoform 1 [Canis
familiaris].
Length = 374
Score = 185 bits (470), Expect = 7e-47
Identities = 89/100 (89%), Positives = 93/100 (93%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100
>ref|XP_853270.1| PREDICTED: similar to XPA binding protein 1 [Canis familiaris].
Length = 268
Score = 165 bits (418), Expect = 8e-41
Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAP A +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1 MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60
Query: 189 EV-PFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EV P+ + IRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVXPYLSLSYIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 101
>ref|XP_851313.1| PREDICTED: similar to lysozyme [Canis familiaris].
Length = 148
Score = 165 bits (417), Expect = 1e-40
Identities = 73/132 (55%), Positives = 98/132 (74%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAIN--HNVGSTDYGIFQ 555
+AK++ +CE AR LK GMDG+ G SLANWVC+A++ES+FNT+A N ++ GS+DYGIFQ
Sbjct: 18 EAKIFSKCELARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQ 77
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
+NS++WC A NAC+I C LDD++ DI CAKRVV+DP G+ AWVAW HC+
Sbjct: 78 LNSKWWCKSNSHSSA-NACNIMCSKFLDDNIDDDIACAKRVVKDPNGMSAWVAWVKHCKG 136
Query: 736 KDVSQYIRGCKL 771
KD+S+Y+ C L
Sbjct: 137 KDLSKYLASCNL 148
>ref|NP_001184016.1| sperm acrosome membrane-associated protein 3 [Canis lupus
familiaris].
Length = 163
Score = 142 bits (358), Expect = 7e-34
Identities = 64/131 (48%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
QA+VY RCE A++L+ GM+GYRG +LA+WVCLA + S FNT A++H GST+ GIFQI
Sbjct: 34 QARVYSRCELAKVLQDFGMEGYRGYTLADWVCLAYFTSGFNTAAVDHEADGSTNNGIFQI 93
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NSR WC + T + N C + C LL+ +L + CA ++ + P G+ +W AWR HCQ K
Sbjct: 94 NSRKWCKNLNT-EVPNVCQMYCSDLLNPNLKDTVICAMKITQQPQGLASWEAWRRHCQGK 152
Query: 739 DVSQYIRGCKL 771
D++ ++ GC L
Sbjct: 153 DLTDWVDGCDL 163
>ref|XP_538021.2| PREDICTED: similar to PNPK6288 [Canis familiaris].
Length = 164
Score = 137 bits (345), Expect = 2e-32
Identities = 57/130 (43%), Positives = 92/130 (70%), Gaps = 1/130 (0%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
AK+Y+RCE A L+K+G++G++G S+ +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 25 AKIYERCELAMKLEKAGLNGFKGYSIEDWLCMAHYESGFDTSFVDHNPDGSSEYGIFQLN 84
Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
S +WCN+G TP N CH+ C+ LL+ + DI CA++V G+ AW +W HC
Sbjct: 85 SAWWCNNGVTP-TQNLCHMECRDLLNRHILDDILCARQVASSKNGMTAWDSWTRHCSGHY 143
Query: 742 VSQYIRGCKL 771
+S++++GC +
Sbjct: 144 LSEWLKGCNM 153
>ref|XP_544211.2| PREDICTED: similar to lysozyme-like protein 2 [Canis familiaris].
Length = 148
Score = 134 bits (337), Expect = 2e-31
Identities = 57/131 (43%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
+ K+Y RC+ A+I ++G+D Y+G SL NW+C+A +ES +NT A GS DYGIFQI
Sbjct: 18 EPKIYTRCKLAKIFLRAGLDNYQGFSLGNWICMAYYESRYNTTAETQLEDGSIDYGIFQI 77
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NS WC K + N CH++C L+ DDL+ I CAK++ ++ G+ W W+ HC+ K
Sbjct: 78 NSFTWCRRAKLQEK-NHCHVACSALITDDLTDAILCAKKIAKETEGMNYWQGWKKHCEGK 136
Query: 739 DVSQYIRGCKL 771
D+S++ +GC++
Sbjct: 137 DLSEWKKGCEV 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,870,515
Number of extensions: 1192568
Number of successful extensions: 3476
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3459
Number of HSP's successfully gapped: 17
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000333
(1311 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000230.1| lysozyme C precursor [Homo sapiens]. 213 2e-55
Alignment gi|NP_009197.2| GPN-loop GTPase 1 isoform a [Homo sapiens]. 186 4e-47
Alignment gi|NP_995328.2| sperm acrosome-associated protein 5 precursor [... 142 5e-34
Alignment gi|NP_001073369.1| sperm acrosome-associated protein 5 precurso... 142 5e-34
Alignment gi|NP_776246.1| sperm acrosome membrane-associated protein 3 [H... 140 3e-33
Alignment gi|NP_115906.3| lysozyme-like protein 1 [Homo sapiens]. 136 4e-32
Alignment gi|NP_001186880.1| lysozyme-like protein 6 precursor [Homo sapi... 134 2e-31
Alignment gi|NP_065159.1| lysozyme-like protein 6 precursor [Homo sapiens]. 134 2e-31
Alignment gi|NP_898881.2| lysozyme-like protein 2 [Homo sapiens]. 134 2e-31
Alignment gi|NP_001138519.1| GPN-loop GTPase 1 isoform b [Homo sapiens]. 133 3e-31
>ref|NP_000230.1| lysozyme C precursor [Homo sapiens].
Length = 148
Score = 213 bits (543), Expect = 2e-55
Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 2/130 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q KV++RCE AR LK+ GMDGYRG+SLANW+CLAKWES +NT+A N+N G STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INSRYWCNDGKTP AVNACH+SC LL D+++ + CAKRVVRDP G++AWVAWR CQN
Sbjct: 77 INSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQN 136
Query: 736 KDVSQYIRGC 765
+DV QY++GC
Sbjct: 137 RDVRQYVQGC 146
>ref|NP_009197.2| GPN-loop GTPase 1 isoform a [Homo sapiens].
Length = 388
Score = 186 bits (472), Expect = 4e-47
Identities = 91/101 (90%), Positives = 94/101 (93%)
Frame = +3
Query: 6 KMAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAV 185
KMAA AA QASGGPR P CLLVLGMAGSGKTTFVQRLTGHLH+QG+PPYVINLDPAV
Sbjct: 14 KMAASAAAAELQASGGPRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAV 73
Query: 186 HEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
HEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 74 HEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 114
>ref|NP_995328.2| sperm acrosome-associated protein 5 precursor [Homo sapiens].
Length = 159
Score = 142 bits (359), Expect = 5e-34
Identities = 58/130 (44%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
AK+Y+RCE A L+++G++GY+G + +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 21 AKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHNPDGSSEYGIFQLN 80
Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
S +WC++G TP N CH+ C LL+ + DI CAK++V G+ AW +WR HC D
Sbjct: 81 SAWWCDNGITPTK-NLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSAWTSWRLHCSGHD 139
Query: 742 VSQYIRGCKL 771
+S++++GC +
Sbjct: 140 LSEWLKGCDM 149
>ref|NP_001073369.1| sperm acrosome-associated protein 5 precursor [Homo sapiens].
Length = 159
Score = 142 bits (359), Expect = 5e-34
Identities = 58/130 (44%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
AK+Y+RCE A L+++G++GY+G + +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 21 AKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHNPDGSSEYGIFQLN 80
Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
S +WC++G TP N CH+ C LL+ + DI CAK++V G+ AW +WR HC D
Sbjct: 81 SAWWCDNGITPTK-NLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSAWTSWRLHCSGHD 139
Query: 742 VSQYIRGCKL 771
+S++++GC +
Sbjct: 140 LSEWLKGCDM 149
>ref|NP_776246.1| sperm acrosome membrane-associated protein 3 [Homo sapiens].
Length = 215
Score = 140 bits (352), Expect = 3e-33
Identities = 63/129 (48%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
+AK+Y RCE AR+L G+DGYRG SLA+WVCLA + S FN A+++ GST+ GIFQI
Sbjct: 86 EAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYEADGSTNNGIFQI 145
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NSR WC++ TP N C + C LL+ +L + CA ++ ++P G+ W AWR HCQ K
Sbjct: 146 NSRRWCSN-LTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGYWEAWRHHCQGK 204
Query: 739 DVSQYIRGC 765
D+++++ GC
Sbjct: 205 DLTEWVDGC 213
>ref|NP_115906.3| lysozyme-like protein 1 [Homo sapiens].
Length = 194
Score = 136 bits (343), Expect = 4e-32
Identities = 58/131 (44%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
++K+Y RC+ A+I ++G+D Y G SL NW+C+A +ES +NT A + GS DYGIFQI
Sbjct: 64 ESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYGIFQI 123
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NS WC GK K N CH++C L+ DDL+ I CA+++V++ G+ W W+ HC+ +
Sbjct: 124 NSFAWCRRGKL-KENNHCHVACSALITDDLTDAIICARKIVKETQGMNYWQGWKKHCEGR 182
Query: 739 DVSQYIRGCKL 771
D+S++ +GC++
Sbjct: 183 DLSEWKKGCEV 193
>ref|NP_001186880.1| lysozyme-like protein 6 precursor [Homo sapiens].
Length = 148
Score = 134 bits (337), Expect = 2e-31
Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
QA + RC+ A++L+ +DG+ G SL++W+CLA ES FN IN N GS DYG+FQI
Sbjct: 18 QASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINENADGSFDYGLFQI 77
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NS YWCND K+ + N CH+ C+ LL+ +L I CAKR+V G+ WV WR HC +
Sbjct: 78 NSHYWCNDYKS-YSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNNWVEWRLHCSGR 136
Query: 739 DVSQYIRGCKL 771
+ ++ GC+L
Sbjct: 137 PLFYWLTGCRL 147
>ref|NP_065159.1| lysozyme-like protein 6 precursor [Homo sapiens].
Length = 148
Score = 134 bits (337), Expect = 2e-31
Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
QA + RC+ A++L+ +DG+ G SL++W+CLA ES FN IN N GS DYG+FQI
Sbjct: 18 QASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINENADGSFDYGLFQI 77
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NS YWCND K+ + N CH+ C+ LL+ +L I CAKR+V G+ WV WR HC +
Sbjct: 78 NSHYWCNDYKS-YSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNNWVEWRLHCSGR 136
Query: 739 DVSQYIRGCKL 771
+ ++ GC+L
Sbjct: 137 PLFYWLTGCRL 147
>ref|NP_898881.2| lysozyme-like protein 2 [Homo sapiens].
Length = 194
Score = 134 bits (336), Expect = 2e-31
Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
++K+Y RC+ A+I ++G+D Y G SL NW+C+A +ES +NT A + GS DYGIFQI
Sbjct: 64 ESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYGIFQI 123
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NS WC GK K N CH++C L+ DDL+ I CAK++V++ G+ W W+ HC+ +
Sbjct: 124 NSFAWCRRGKL-KENNHCHVACSALVTDDLTDAIICAKKIVKETQGMNYWQGWKKHCEGR 182
Query: 739 DVSQYIRGCKL 771
D+S + + C++
Sbjct: 183 DLSDWKKDCEV 193
>ref|NP_001138519.1| GPN-loop GTPase 1 isoform b [Homo sapiens].
Length = 362
Score = 133 bits (335), Expect = 3e-31
Identities = 65/85 (76%), Positives = 72/85 (84%)
Frame = +3
Query: 54 PRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVK 233
PR +L++ K F +RLTGHLH+QG+PPYVINLDPAVHEVPFPANIDIRDTVK
Sbjct: 10 PRCTGIVLLI------KLRFSERLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVK 63
Query: 234 YKEVMKQYGLGPNGGIVTSLNLFAS 308
YKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 64 YKEVMKQYGLGPNGGIVTSLNLFAT 88
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,191,735
Number of extensions: 1187115
Number of successful extensions: 3394
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3364
Number of HSP's successfully gapped: 15
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000333
(1311 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059068.1| lysozyme C-2 precursor [Mus musculus]. 214 2e-55
Alignment gi|NP_038618.1| lysozyme C-1 precursor [Mus musculus]. 208 7e-54
Alignment gi|NP_598517.1| GPN-loop GTPase 1 [Mus musculus]. 180 2e-45
Alignment gi|NP_084182.2| lysozyme C-like [Mus musculus]. 174 1e-43
Alignment gi|NP_001078862.1| sperm acrosome-associated protein 5 precurso... 140 3e-33
Alignment gi|NP_080368.1| lysozyme-like protein 1 precursor [Mus musculus]. 139 4e-33
Alignment gi|NP_083643.1| sperm acrosome membrane-associated protein 3 [M... 139 6e-33
Alignment gi|NP_081359.1| lysozyme-like protein 6 precursor [Mus musculus]. 135 5e-32
Alignment gi|NP_081191.1| lysozyme-like protein 4 precursor [Mus musculus]. 109 5e-24
Alignment gi|NP_034809.1| alpha-lactalbumin precursor [Mus musculus]. 104 2e-22
>ref|NP_059068.1| lysozyme C-2 precursor [Mus musculus].
Length = 148
Score = 214 bits (544), Expect = 2e-55
Identities = 99/146 (67%), Positives = 117/146 (80%), Gaps = 2/146 (1%)
Frame = +1
Query: 334 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 513
MKT QAKVY+RCEFAR LK++GM GY GVSLA+WVCLA+ ES++NT+A
Sbjct: 1 MKTLLTLGLLLLSVTAQAKVYERCEFARTLKRNGMAGYYGVSLADWVCLAQHESNYNTRA 60
Query: 514 INHNVG--STDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRD 687
N+N G STDYGIFQINSRYWCNDGKTP+AVNAC I+C LL DD++ I+CAKRVVRD
Sbjct: 61 TNYNRGDQSTDYGIFQINSRYWCNDGKTPRAVNACGINCSALLQDDITAAIQCAKRVVRD 120
Query: 688 PLGVKAWVAWRAHCQNKDVSQYIRGC 765
P G++AWVAWRAHCQN+D+SQYIR C
Sbjct: 121 PQGIRAWVAWRAHCQNRDLSQYIRNC 146
>ref|NP_038618.1| lysozyme C-1 precursor [Mus musculus].
Length = 148
Score = 208 bits (530), Expect = 7e-54
Identities = 93/130 (71%), Positives = 112/130 (86%), Gaps = 2/130 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
QAKVY+RCE ARILK++GMDGYRGV LA+WVCLA+ ES++NT+A N+N G STDYGIFQ
Sbjct: 17 QAKVYNRCELARILKRNGMDGYRGVKLADWVCLAQHESNYNTRATNYNRGDRSTDYGIFQ 76
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INSRYWCNDGKTP++ NAC I+C LL DD++ I+CAKRVVRDP G++AWVAWR CQN
Sbjct: 77 INSRYWCNDGKTPRSKNACGINCSALLQDDITAAIQCAKRVVRDPQGIRAWVAWRTQCQN 136
Query: 736 KDVSQYIRGC 765
+D+SQYIR C
Sbjct: 137 RDLSQYIRNC 146
>ref|NP_598517.1| GPN-loop GTPase 1 [Mus musculus].
Length = 372
Score = 180 bits (457), Expect = 2e-45
Identities = 87/100 (87%), Positives = 92/100 (92%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAP A + PQAS P+ P CLLVLGMAGSGKTTFVQRLTGHLH++G PPYVINLDPAVH
Sbjct: 1 MAAPVAPSEPQASRAPQPPVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVH 60
Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100
>ref|NP_084182.2| lysozyme C-like [Mus musculus].
Length = 151
Score = 174 bits (441), Expect = 1e-43
Identities = 76/132 (57%), Positives = 96/132 (72%), Gaps = 2/132 (1%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
Q KVYDRC AR L+ G+ G++G++LANWVCLAKWES+FNT N ST YGIFQ
Sbjct: 20 QGKVYDRCSLARTLQSLGLAGFQGITLANWVCLAKWESNFNTNTTRFNPEDQSTSYGIFQ 79
Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
INSR+WCNDGKTP + N C ISCK LL ++ + CAKR+V+DP G+ +W W HC+N
Sbjct: 80 INSRFWCNDGKTPGSRNFCRISCKALLKSNIWSAVVCAKRIVKDPQGIYSWAGWIKHCKN 139
Query: 736 KDVSQYIRGCKL 771
K++ +YIRGC L
Sbjct: 140 KNLKEYIRGCHL 151
>ref|NP_001078862.1| sperm acrosome-associated protein 5 precursor [Mus musculus].
Length = 160
Score = 140 bits (352), Expect = 3e-33
Identities = 59/130 (45%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
AK+Y+RCE A+ L+++G+DG++G ++ +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 21 AKIYERCELAKKLEEAGLDGFKGYTVGDWLCVAHYESGFDTSFVDHNPDGSSEYGIFQLN 80
Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
S +WCN+G TP N C+I C LL+ + DI CAKRV +KAW +W HC D
Sbjct: 81 SAWWCNNGITP-TQNLCNIDCNDLLNRHILDDIICAKRVASSHKSMKAWDSWTQHCAGHD 139
Query: 742 VSQYIRGCKL 771
+S++++GC +
Sbjct: 140 LSEWLKGCSV 149
>ref|NP_080368.1| lysozyme-like protein 1 precursor [Mus musculus].
Length = 148
Score = 139 bits (351), Expect = 4e-33
Identities = 60/131 (45%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
++K+Y RC+ A+I K+G+D Y G +L NW+C+A +ES +NT A N GSTDYGIFQI
Sbjct: 18 ESKIYTRCKLAKIFAKAGLDNYGGFALGNWLCMAYYESHYNTTAENVLEDGSTDYGIFQI 77
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NS WC + + + N CH++C L+ DDL+ I CAK++V++ G+ W W+ +C+NK
Sbjct: 78 NSFTWCRNARKHQK-NHCHVACSALITDDLTDAILCAKKIVKETQGMNYWQGWKKNCENK 136
Query: 739 DVSQYIRGCKL 771
D+S++ RGC++
Sbjct: 137 DMSEWKRGCEV 147
>ref|NP_083643.1| sperm acrosome membrane-associated protein 3 [Mus musculus].
Length = 163
Score = 139 bits (349), Expect = 6e-33
Identities = 64/129 (49%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
+AKV+ RCE A+ + G+DGYRG +LA+WVCLA + S FNT A++H GST+ GIFQI
Sbjct: 34 KAKVFSRCELAKEMHDFGLDGYRGYNLADWVCLAYYTSGFNTNAVDHEADGSTNNGIFQI 93
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
+SR WC N C I C LL++DL I CA ++V++PLG+ W AWR HCQ +
Sbjct: 94 SSRRWCRT-LASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPLGLGYWEAWRHHCQGR 152
Query: 739 DVSQYIRGC 765
D+S ++ GC
Sbjct: 153 DLSDWVDGC 161
>ref|NP_081359.1| lysozyme-like protein 6 precursor [Mus musculus].
Length = 148
Score = 135 bits (341), Expect = 5e-32
Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
Frame = +1
Query: 391 VYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQINSR 567
+ RC A+IL + +DG+ G SL +W+CLA ES+FN +N NV GS DYGIFQINSR
Sbjct: 21 IIHRCSLAKILYEEDLDGFEGYSLPDWLCLAFVESNFNISKVNENVDGSFDYGIFQINSR 80
Query: 568 YWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKDVS 747
YWCND ++ + N CH+ C+ LL +L I CAK++V P G+K WV W+ HC + +S
Sbjct: 81 YWCNDYQS-HSENFCHVDCQELLSPNLISTIHCAKKIVSGPGGMKNWVEWKLHCLGRPLS 139
Query: 748 QYIRGCKL 771
++ GC L
Sbjct: 140 YWMTGCHL 147
>ref|NP_081191.1| lysozyme-like protein 4 precursor [Mus musculus].
Length = 145
Score = 109 bits (272), Expect = 5e-24
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV--GSTDYGIFQI 558
A + RC A++L G++ + G SL NWVCLA +ES FN A+ + GST +G+FQI
Sbjct: 19 ASILGRCTVAKMLYDGGLNYFEGYSLENWVCLAYFESKFNPSAVYEDPQDGSTGFGLFQI 78
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
WC GK N C +SC LL+ +L I+CAK++V+ G+ AW W +CQ
Sbjct: 79 RDNEWCGHGK-----NLCSVSCTALLNPNLKDTIQCAKKIVKGKHGMGAWPIWSKNCQLS 133
Query: 739 DV-SQYIRGCKL 771
DV +++ GC L
Sbjct: 134 DVLDRWLDGCDL 145
>ref|NP_034809.1| alpha-lactalbumin precursor [Mus musculus].
Length = 143
Score = 104 bits (259), Expect = 2e-22
Identities = 47/119 (39%), Positives = 75/119 (63%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQIN 561
QA +C+ + +K +DGY+G+SL W C+ S ++T+A+ ++ GST+YG+FQI+
Sbjct: 19 QATELTKCKVSHAIKD--IDGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQIS 76
Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
R+WC + P++ N C ISC LLDD+L DI CAK+++ G+ W A++ C K
Sbjct: 77 DRFWCKSSEFPESENICGISCDKLLDDELDDDIACAKKILAIK-GIDYWKAYKPMCSEK 134
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,386,169
Number of extensions: 1009675
Number of successful extensions: 2902
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2880
Number of HSP's successfully gapped: 12
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000333
(1311 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999557.2| lysozyme C-3 precursor [Sus scrofa]. 282 3e-76
Alignment gi|XP_003125337.2| PREDICTED: GPN-loop GTPase 1-like [Sus scrof... 204 1e-52
Alignment gi|NP_001171399.1| sperm acrosome membrane-associated protein 3... 149 3e-36
Alignment gi|NP_001171401.1| sperm acrosome-associated protein 5 [Sus scr... 143 2e-34
Alignment gi|XP_003130749.1| PREDICTED: lysozyme-like protein 1-like [Sus... 142 5e-34
Alignment gi|XP_003132180.1| PREDICTED: lysozyme-like protein 4-like isof... 120 2e-27
Alignment gi|XP_003132179.1| PREDICTED: lysozyme-like protein 4-like isof... 120 2e-27
Alignment gi|NP_999525.1| alpha-lactalbumin precursor [Sus scrofa]. 109 4e-24
Alignment gi|NP_001230637.1| GPN-loop GTPase 3 [Sus scrofa]. 59 8e-09
Alignment gi|XP_003127766.1| PREDICTED: GPN-loop GTPase 2-like [Sus scrof... 57 2e-08
>ref|NP_999557.2| lysozyme C-3 precursor [Sus scrofa].
Length = 146
Score = 282 bits (722), Expect = 3e-76
Identities = 133/146 (91%), Positives = 133/146 (91%)
Frame = +1
Query: 334 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 513
MKT QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA
Sbjct: 1 MKTLLVLALLLLSVSVQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 60
Query: 514 INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPL 693
INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPL
Sbjct: 61 INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPL 120
Query: 694 GVKAWVAWRAHCQNKDVSQYIRGCKL 771
GVKAWVAWRAHCQNKDVSQYIRGCKL
Sbjct: 121 GVKAWVAWRAHCQNKDVSQYIRGCKL 146
>ref|XP_003125337.2| PREDICTED: GPN-loop GTPase 1-like [Sus scrofa].
Length = 373
Score = 204 bits (518), Expect = 1e-52
Identities = 99/100 (99%), Positives = 100/100 (100%)
Frame = +3
Query: 9 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH
Sbjct: 1 MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 60
Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100
>ref|NP_001171399.1| sperm acrosome membrane-associated protein 3 [Sus scrofa].
Length = 163
Score = 149 bits (377), Expect = 3e-36
Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
QAKVY RCE AR+L+ G+DG+RG SLANWVCLA + S FNT A++H GST+ GIFQI
Sbjct: 34 QAKVYSRCELARLLQDVGLDGFRGYSLANWVCLAYFASGFNTAAVDHEADGSTNSGIFQI 93
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NSR WC + P +N C + C LL+ +L I CA ++ +DP G+ W AWR HCQ K
Sbjct: 94 NSRKWCRN-LNPSVLNLCQMYCSDLLNPNLKDTIICAMKIAQDPKGLGTWEAWRHHCQGK 152
Query: 739 DVSQYIRGCKL 771
D++ ++ GC L
Sbjct: 153 DLTDWVDGCDL 163
>ref|NP_001171401.1| sperm acrosome-associated protein 5 [Sus scrofa].
Length = 160
Score = 143 bits (361), Expect = 2e-34
Identities = 62/140 (44%), Positives = 95/140 (67%), Gaps = 1/140 (0%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
AK+Y+RCE A L+K+G+DG++G + +W+C+A +ES F+T +NHN GS++YGIFQ+N
Sbjct: 21 AKIYERCELATKLEKAGLDGFKGYTTGDWLCMAHYESGFDTSFVNHNPDGSSEYGIFQLN 80
Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
S +WC++G TP N CH+ C LL+ + DI CA++VV G+ AW +W HC D
Sbjct: 81 SAWWCDNGVTPTQ-NLCHMECHELLNRHILDDIMCAQQVVSSQEGMNAWDSWSQHCSGHD 139
Query: 742 VSQYIRGCKL*LCSFPSSAH 801
+S++++GC L + P H
Sbjct: 140 LSEWLKGCHLNVKPDPKRIH 159
>ref|XP_003130749.1| PREDICTED: lysozyme-like protein 1-like [Sus scrofa].
Length = 148
Score = 142 bits (357), Expect = 5e-34
Identities = 61/131 (46%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA-INHNVGSTDYGIFQI 558
+ K+Y RC+ A+I ++G+D YRG SL NW+C+A +ES +NT A N GSTDYGIFQI
Sbjct: 18 EPKIYTRCKLAKIFSRAGLDNYRGFSLGNWICMAYYESHYNTTAQTNLEDGSTDYGIFQI 77
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
NS WC K + N CH++C L+ DDL+ I CAK++V++ G+ W W+ HC+ K
Sbjct: 78 NSYTWCRREKLQEK-NHCHVACSALITDDLTDAIICAKKIVKETEGMNYWQGWKNHCEGK 136
Query: 739 DVSQYIRGCKL 771
D+S++ +GC++
Sbjct: 137 DLSEWKKGCEV 147
>ref|XP_003132180.1| PREDICTED: lysozyme-like protein 4-like isoform 2 [Sus scrofa].
Length = 145
Score = 120 bits (300), Expect = 2e-27
Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQI 558
A V RC A+ L + G+ Y G SL NWVCLA +ES FN A+ N+ T YG+FQI
Sbjct: 19 AAVLGRCVVAKKLHEGGLSDYEGYSLENWVCLAYFESKFNPTAVYDNLRGDYTGYGLFQI 78
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
+ WC+ GK N CH+SC LL+ +L + I+CAK++V+ G+ AW +W +CQN
Sbjct: 79 RNHDWCDHGK-----NRCHVSCSALLNPNLKETIKCAKKIVQGKRGMGAWPSWTLNCQNS 133
Query: 739 D-VSQYIRGCKL 771
D +++++ GCKL
Sbjct: 134 DTLARWLDGCKL 145
>ref|XP_003132179.1| PREDICTED: lysozyme-like protein 4-like isoform 1 [Sus scrofa].
Length = 145
Score = 120 bits (300), Expect = 2e-27
Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
Frame = +1
Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQI 558
A V RC A+ L + G+ Y G SL NWVCLA +ES FN A+ N+ T YG+FQI
Sbjct: 19 AAVLGRCVVAKKLHEGGLSDYEGYSLENWVCLAYFESKFNPTAVYDNLRGDYTGYGLFQI 78
Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
+ WC+ GK N CH+SC LL+ +L + I+CAK++V+ G+ AW +W +CQN
Sbjct: 79 RNHDWCDHGK-----NRCHVSCSALLNPNLKETIKCAKKIVQGKRGMGAWPSWTLNCQNS 133
Query: 739 D-VSQYIRGCKL 771
D +++++ GCKL
Sbjct: 134 DTLARWLDGCKL 145
>ref|NP_999525.1| alpha-lactalbumin precursor [Sus scrofa].
Length = 141
Score = 109 bits (272), Expect = 4e-24
Identities = 52/119 (43%), Positives = 78/119 (65%)
Frame = +1
Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQIN 561
QAK + +CE +++LK MDGY ++L W+C S ++TK I H+ GST+YG+FQIN
Sbjct: 18 QAKQFTKCELSQVLKD--MDGYGDITLPEWICTIFHISGYDTKTIVHDNGSTEYGLFQIN 75
Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
++ WC D + ++ N C ISC LDDDL+ D+ CAK+++ D G+ W+A +A C K
Sbjct: 76 NKLWCRDNQI-QSKNICGISCDKFLDDDLTDDMMCAKKIL-DNEGIDYWLAHKALCSEK 132
>ref|NP_001230637.1| GPN-loop GTPase 3 [Sus scrofa].
Length = 284
Score = 58.5 bits (140), Expect = 8e-09
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 75 LVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQ 254
LV+G AGSGK+T+ + H + V+NLDPA + DIR+ ++ +VM+
Sbjct: 7 LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFSYSVMADIRELIEVDDVMED 66
Query: 255 YGL--GPNGGIVTSLNLFAS 308
L GPNGG+V + FA+
Sbjct: 67 NTLQFGPNGGLVFCMEYFAN 86
>ref|XP_003127766.1| PREDICTED: GPN-loop GTPase 2-like [Sus scrofa].
Length = 310
Score = 57.0 bits (136), Expect = 2e-08
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +3
Query: 78 VLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQY 257
V+G GSGKTT+ ++ L + G V+NLDPA +P+ +D+ + V +VM +
Sbjct: 14 VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLSDVMDEL 73
Query: 258 GLGPNGGIV 284
LGPNGG++
Sbjct: 74 QLGPNGGLL 82
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,506,511
Number of extensions: 739804
Number of successful extensions: 2228
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2209
Number of HSP's successfully gapped: 10
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000333
(1311 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1162 0.0
Sscrofa_Chr03 236 2e-59
>Sscrofa_Chr05
|| Length = 111506441
Score = 1162 bits (586), Expect = 0.0
Identities = 602/606 (99%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 707 gggtggcatggagagctcattgtcagaacaaagatgtctcgcagtacattcggggttgca 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36180016 gggtggcatggagagctcattgtcagaacaaagatgtctcgcagtacattcggggttgca 36179957
Query: 767 aactgtaactgtgcagttttccttcttcagctcaccttgtctctttttcatatttaggaa 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179956 aactgtaactgtgcagttttccttcttcagctcaccttgtctctttttcatatttaggaa 36179897
Query: 827 ataatagttgaatgaaaggtcatactaccattcttgcgaacaaatcatggttttaccgaa 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179896 ataatagttgaatgaaaggtcatactaccattcttgcgaacaaatcatggttttaccgaa 36179837
Query: 887 gcaagagcataaggtctttctttaagaggcttaatgtttacctaatgtgtttattgtttg 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179836 gcaagagcataaggtctttctttaagaggcttaatgtttacctaatgtgtttattgtttg 36179777
Query: 947 tgtttattgttttataggcctacaatatttttcaatttgctaagagaattattgttggtc 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179776 tgtttattgttttataggcctacaatatttttcaatttgctaagagaattattgttggtc 36179717
Query: 1007 tgaaatcttaattatcaaatatacctccagtacattcagttcttaatcaaagaaataaac 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179716 tgaaatcttaattatcaaatatacctccagtacattcagttcttaatcaaagaaataaac 36179657
Query: 1067 cagaaacagtcttcatctgttcagttatctctaaaaacagtaaaagataaccagtctttg 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179656 cagaaacagtcttcatctgttcagttatctctaaaaacagtaaaagataaccagtctttg 36179597
Query: 1127 ttgggtaatataaaattttaaaaggagcagaatgccagatggcttaaaatgaagacaacc 1186
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 36179596 ttgggtaatataaaattttaaaaggagcagaatgccagatggctaaaaatgaagacaacc 36179537
Query: 1187 tgaattaagaattttgctttcataaagtgtgacctttggcttaaatgttttctcaaagat 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 36179536 tgaattaagaattttgctttcataaagtgtgacctttggcttaaatgttttctcagagat 36179477
Query: 1247 gattcgttcatttaaacgaattttaaaatagtctcac-atttaggtatccatctctttta 1305
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 36179476 gattcgttcattaaaacgaattttaaaatagtctcacaatttaggtatccatctctttta 36179417
Query: 1306 gccttt 1311
||||||
Sbjct: 36179416 gccttt 36179411
Score = 327 bits (165), Expect = 9e-87
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 306 agcctggagccccggcttctcagacaacatgaagactctcctcgttcttgcgcttctcct 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185516 agcctggagccccggcttctcagacaacatgaagactctcctcgttcttgcgcttctcct 36185457
Query: 366 cctttctgtctctgtacaggccaaggtctatgatcggtgcgagttcgccagaattctgaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185456 cctttctgtctctgtacaggccaaggtctatgatcggtgcgagttcgccagaattctgaa 36185397
Query: 426 aaagtctggcatggacggctataggggagtcagcctggcgaactg 470
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185396 aaagtctggcatggacggctataggggagtcagcctggcgaactg 36185352
Score = 315 bits (159), Expect = 3e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 470 gggtgtgtttggccaagtgggaaagtgattttaacacaaaagctataaaccacaatgttg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36183202 gggtgtgtttggccaagtgggaaagtgattttaacacaaaagctataaaccacaatgttg 36183143
Query: 530 gaagcactgattatggaatatttcaaattaatagccgctactggtgtaatgatggcaaga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36183142 gaagcactgattatggaatatttcaaattaatagccgctactggtgtaatgatggcaaga 36183083
Query: 590 cacccaaagcagttaatgcctgtcacatatcctgcaaag 628
|||||||||||||||||||||||||||||||||||||||
Sbjct: 36183082 cacccaaagcagttaatgcctgtcacatatcctgcaaag 36183044
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 627 agttttgctggacgatgacctcagtcaagatatagaatgtgcaaagagggttgtcagaga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36181081 agttttgctggacgatgacctcagtcaagatatagaatgtgcaaagagggttgtcagaga 36181022
Query: 687 tccactaggcgttaaagcatgg 708
||||||||||||||||||||||
Sbjct: 36181021 tccactaggcgttaaagcatgg 36181000
>Sscrofa_Chr03
|| Length = 144787322
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 1 ggagcaagatggctgcgcccgaagctgccacggtgccgcaagcttccgggggtccccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118531374 ggagcaagatggctgcgcccgaagctgccacggtgccgcaagcttccgggggtccccggg 118531315
Query: 61 ctccggcgtgcctgttggtgctgggaatggcggggtctgggaaaaccacctttgtacag 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118531314 ctccggcgtgcctgttggtgctgggaatggcggggtctgggaaaaccacctttgtacag 118531256
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 117 cagaggctcaccggacatctgcatagtcaaggctctccaccttatgtgatcaacctggac 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118530566 cagaggctcaccggacatctgcatagtcaaggctctccaccttatgtgatcaacctggac 118530507
Query: 177 ccagctgtgcatgaagttccctttcctgccaatattg 213
|||||||||||||||||||||||||||||||||||||
Sbjct: 118530506 ccagctgtgcatgaagttccctttcctgccaatattg 118530470
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 254 gtatggacttggaccgaacggcggcatagtgacctcactcaatctctttgcta 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118526517 gtatggacttggaccgaacggcggcatagtgacctcactcaatctctttgcta 118526465
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 213 gatattcgtgacactgtgaagtataaagaagtcatgaaacagtat 257
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118527340 gatattcgtgacactgtgaagtataaagaagtcatgaaacagtat 118527296
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,318,161
Number of extensions: 368
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 8
Length of query: 1311
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1290
Effective length of database: 2,808,413,156
Effective search space: 3622852971240
Effective search space used: 3622852971240
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)