Animal-Genome cDNA 20110601C-000333


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000333
         (1311 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001071297.1| lysozyme C, milk isozyme precursor [Bos taur...   209   4e-54
Alignment   gi|NP_001071627.1| lysozyme C, non-stomach isozyme precursor [B...   205   6e-53
Alignment   gi|NP_001073808.1| lysozyme C-1 precursor [Bos taurus].              190   3e-48
Alignment   gi|NP_776529.1| lysozyme C-3 precursor [Bos taurus].                 189   5e-48
Alignment   gi|NP_001076861.1| GPN-loop GTPase 1 [Bos taurus].                   189   6e-48
Alignment   gi|NP_851342.1| lysozyme C-2 precursor [Bos taurus].                 189   6e-48
Alignment   gi|XP_002687434.1| PREDICTED: lysozyme 14D [Bos taurus].             179   4e-45
Alignment   gi|XP_001252825.3| PREDICTED: lysozyme 14D [Bos taurus].             179   4e-45
Alignment   gi|NP_001007806.1| lysozyme C, intestinal isozyme precursor [Bo...   178   8e-45
Alignment   gi|NP_001073805.1| lysozyme C, tracheal isozyme precursor [Bos ...   176   3e-44

>ref|NP_001071297.1| lysozyme C, milk isozyme precursor [Bos taurus].
          Length = 148

 Score =  209 bits (532), Expect = 4e-54
 Identities = 92/132 (69%), Positives = 110/132 (83%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q K + RCE AR LKK G+DGYRGVSLANWVCLA+WES++NT+A N+N G  STDYGIFQ
Sbjct: 17  QGKKFQRCELARTLKKLGLDGYRGVSLANWVCLARWESNYNTRATNYNRGDKSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INSR+WCNDGKTPKAVNAC I C  LL DD++Q + CAKRVVRDP G+KAWVAWR  CQN
Sbjct: 77  INSRWWCNDGKTPKAVNACRIPCSALLKDDITQAVACAKRVVRDPQGIKAWVAWRNKCQN 136

Query: 736 KDVSQYIRGCKL 771
           +D+  Y++GC++
Sbjct: 137 RDLRSYVQGCRV 148


>ref|NP_001071627.1| lysozyme C, non-stomach isozyme precursor [Bos taurus].
          Length = 148

 Score =  205 bits (522), Expect = 6e-53
 Identities = 87/130 (66%), Positives = 110/130 (84%), Gaps = 2/130 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q KV++RCE AR LK+ GMD +RG+SLANW+CLA+WES++NT+A N+N G  STDYGIFQ
Sbjct: 17  QGKVFERCELARSLKRFGMDNFRGISLANWMCLARWESNYNTQATNYNAGDQSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS +WCNDGKTP AVNACH+ C  LL DD++Q + CAKRVV DP G++AWVAWR+HCQN
Sbjct: 77  INSHWWCNDGKTPGAVNACHLPCGALLQDDITQAVACAKRVVSDPQGIRAWVAWRSHCQN 136

Query: 736 KDVSQYIRGC 765
           +D++ YI+GC
Sbjct: 137 QDLTSYIQGC 146


>ref|NP_001073808.1| lysozyme C-1 precursor [Bos taurus].
          Length = 147

 Score =  190 bits (482), Expect = 3e-48
 Identities = 80/132 (60%), Positives = 108/132 (81%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N G  STDYGIFQ
Sbjct: 17  QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPGSESTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS++WCNDGKTP AV+ CH+SC  L+++++++ + CAK++V +  G+ AWVAW++HC++
Sbjct: 77  INSKWWCNDGKTPNAVDGCHVSCSELMENEIAKAVACAKQIVSEQ-GITAWVAWKSHCRD 135

Query: 736 KDVSQYIRGCKL 771
            DVS Y+ GC L
Sbjct: 136 HDVSSYVEGCTL 147


>ref|NP_776529.1| lysozyme C-3 precursor [Bos taurus].
          Length = 147

 Score =  189 bits (480), Expect = 5e-48
 Identities = 80/132 (60%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N    STDYGIFQ
Sbjct: 17  QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS++WCNDGKTP AV+ CH+SC  L+++D+++ + CAK +V +  G+ AWVAW++HC++
Sbjct: 77  INSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSEQ-GITAWVAWKSHCRD 135

Query: 736 KDVSQYIRGCKL 771
            DVS Y++GC L
Sbjct: 136 HDVSSYVQGCTL 147


>ref|NP_001076861.1| GPN-loop GTPase 1 [Bos taurus].
          Length = 373

 Score =  189 bits (479), Expect = 6e-48
 Identities = 92/100 (92%), Positives = 95/100 (95%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAP +AT  QASGGPR PACLLVLGMAGSGKTTFVQRLTG+LHSQG PPYVINLDPAVH
Sbjct: 1   MAAPASATESQASGGPRPPACLLVLGMAGSGKTTFVQRLTGYLHSQGCPPYVINLDPAVH 60

Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100


>ref|NP_851342.1| lysozyme C-2 precursor [Bos taurus].
          Length = 147

 Score =  189 bits (479), Expect = 6e-48
 Identities = 80/132 (60%), Positives = 106/132 (80%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N    STDYGIFQ
Sbjct: 17  QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS++WCNDGKTP AV+ CH+SC  L+++D+++ + CAK +V +  G+ AWVAW++HC++
Sbjct: 77  INSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSEQ-GITAWVAWKSHCRD 135

Query: 736 KDVSQYIRGCKL 771
            DVS Y+ GC L
Sbjct: 136 HDVSSYVEGCTL 147


>ref|XP_002687434.1| PREDICTED: lysozyme 14D [Bos taurus].
          Length = 147

 Score =  179 bits (455), Expect = 4e-45
 Identities = 79/132 (59%), Positives = 105/132 (79%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q K ++RCE AR LK  G+ GY+GVSLANW+CLAK ES +NT+A N++ G  STDYGIFQ
Sbjct: 17  QGKTFERCELARTLKNLGLAGYKGVSLANWMCLAKGESGYNTQAKNYSPGFKSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS++WCNDGKTPKAVN C +SC  LL DD++Q + CAK++V   LG+ AWVAW+  CQN
Sbjct: 77  INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIV-SQLGLTAWVAWKNKCQN 135

Query: 736 KDVSQYIRGCKL 771
           +D++ Y++GC++
Sbjct: 136 RDLTSYVQGCRV 147


>ref|XP_001252825.3| PREDICTED: lysozyme 14D [Bos taurus].
          Length = 147

 Score =  179 bits (455), Expect = 4e-45
 Identities = 79/132 (59%), Positives = 105/132 (79%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q K ++RCE AR LK  G+ GY+GVSLANW+CLAK ES +NT+A N++ G  STDYGIFQ
Sbjct: 17  QGKTFERCELARTLKNLGLAGYKGVSLANWMCLAKGESGYNTQAKNYSPGFKSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS++WCNDGKTPKAVN C +SC  LL DD++Q + CAK++V   LG+ AWVAW+  CQN
Sbjct: 77  INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIV-SQLGLTAWVAWKNKCQN 135

Query: 736 KDVSQYIRGCKL 771
           +D++ Y++GC++
Sbjct: 136 RDLTSYVQGCRV 147


>ref|NP_001007806.1| lysozyme C, intestinal isozyme precursor [Bos taurus].
          Length = 147

 Score =  178 bits (452), Expect = 8e-45
 Identities = 79/132 (59%), Positives = 102/132 (77%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQ 555
           Q K +++CE AR L++ G+DGY+GVSLANW+CL   ES +NT+  N+N GS  TDYGIFQ
Sbjct: 17  QGKKFEKCELARTLRRYGLDGYKGVSLANWMCLTYGESRYNTRVTNYNPGSKSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS++WCNDGKTPKAVN C +SC  +L DD++Q + CAK +V    G+ AWVAW+  C+N
Sbjct: 77  INSKWWCNDGKTPKAVNGCGVSCSAMLKDDITQAVACAKTIV-SRQGITAWVAWKNKCRN 135

Query: 736 KDVSQYIRGCKL 771
           +DVS YIRGCKL
Sbjct: 136 RDVSSYIRGCKL 147


>ref|NP_001073805.1| lysozyme C, tracheal isozyme precursor [Bos taurus].
          Length = 147

 Score =  176 bits (447), Expect = 3e-44
 Identities = 77/130 (59%), Positives = 102/130 (78%), Gaps = 2/130 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQ 555
           Q K + RCE A+ LK  G+ GY+GVSLANW+CLAK ES++NT+A N+N GS  TDYGIFQ
Sbjct: 17  QGKTFKRCELAKTLKNLGLAGYKGVSLANWMCLAKGESNYNTQAKNYNPGSKSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INS++WCNDGKTPKAVN C +SC  LL DD++Q + CAK++V    G+ AWVAW+  C+N
Sbjct: 77  INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIVSQQ-GITAWVAWKNKCRN 135

Query: 736 KDVSQYIRGC 765
           +D++ Y++GC
Sbjct: 136 RDLTSYVKGC 145


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,998,001
Number of extensions: 1160518
Number of successful extensions: 3541
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 3494
Number of HSP's successfully gapped: 23
Length of query: 437
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 332
Effective length of database: 14,207,134
Effective search space: 4716768488
Effective search space used: 4716768488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000333
         (1311 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531672.1| PREDICTED: similar to lysozyme precursor [Canis...   218   1e-56
Alignment   gi|XP_532914.2| PREDICTED: similar to XPA binding protein 1 iso...   185   7e-47
Alignment   gi|XP_850597.1| PREDICTED: similar to XPA binding protein 1 iso...   185   7e-47
Alignment   gi|XP_861696.1| PREDICTED: similar to XPA binding protein 1 iso...   185   7e-47
Alignment   gi|XP_850503.1| PREDICTED: similar to XPA binding protein 1 iso...   185   7e-47
Alignment   gi|XP_853270.1| PREDICTED: similar to XPA binding protein 1 [Ca...   165   8e-41
Alignment   gi|XP_851313.1| PREDICTED: similar to lysozyme [Canis familiari...   165   1e-40
Alignment   gi|NP_001184016.1| sperm acrosome membrane-associated protein 3...   142   7e-34
Alignment   gi|XP_538021.2| PREDICTED: similar to PNPK6288 [Canis familiari...   137   2e-32
Alignment   gi|XP_544211.2| PREDICTED: similar to lysozyme-like protein 2 [...   134   2e-31

>ref|XP_531672.1| PREDICTED: similar to lysozyme precursor [Canis familiaris].
          Length = 148

 Score =  218 bits (555), Expect = 1e-56
 Identities = 97/146 (66%), Positives = 115/146 (78%), Gaps = 2/146 (1%)
 Frame = +1

Query: 334 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 513
           MKT             Q K+++RCE AR LK  G+ GY+GVSLANWVCLAKWES++NT+A
Sbjct: 1   MKTLLFLGLLLLSITVQGKIFERCELARTLKNLGLAGYKGVSLANWVCLAKWESNYNTRA 60

Query: 514 INHNVGS--TDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRD 687
            N+N GS  TDYGIFQINSRYWCNDGKTP+AVNACHISC  LL DD++Q + CAKRVV D
Sbjct: 61  TNYNPGSKSTDYGIFQINSRYWCNDGKTPRAVNACHISCSALLQDDITQAVACAKRVVSD 120

Query: 688 PLGVKAWVAWRAHCQNKDVSQYIRGC 765
           P G++AWVAWRAHC+N+DVSQY+R C
Sbjct: 121 PNGIRAWVAWRAHCENRDVSQYVRNC 146


>ref|XP_532914.2| PREDICTED: similar to XPA binding protein 1 isoform 1 [Canis
           familiaris].
          Length = 288

 Score =  185 bits (470), Expect = 7e-47
 Identities = 89/100 (89%), Positives = 93/100 (93%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAP  A   +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1   MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60

Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100


>ref|XP_850597.1| PREDICTED: similar to XPA binding protein 1 isoform 2 [Canis
           familiaris].
          Length = 374

 Score =  185 bits (470), Expect = 7e-47
 Identities = 89/100 (89%), Positives = 93/100 (93%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAP  A   +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1   MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60

Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100


>ref|XP_861696.1| PREDICTED: similar to XPA binding protein 1 isoform 6 [Canis
           familiaris].
          Length = 288

 Score =  185 bits (470), Expect = 7e-47
 Identities = 89/100 (89%), Positives = 93/100 (93%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAP  A   +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1   MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60

Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100


>ref|XP_850503.1| PREDICTED: similar to XPA binding protein 1 isoform 1 [Canis
           familiaris].
          Length = 374

 Score =  185 bits (470), Expect = 7e-47
 Identities = 89/100 (89%), Positives = 93/100 (93%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAP  A   +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1   MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60

Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100


>ref|XP_853270.1| PREDICTED: similar to XPA binding protein 1 [Canis familiaris].
          Length = 268

 Score =  165 bits (418), Expect = 8e-41
 Identities = 83/101 (82%), Positives = 89/101 (88%), Gaps = 1/101 (0%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAP  A   +ASGGPR P CLLVLGMAGSGKTTFVQRLTGHLHS+GSPPYV+NLDPAVH
Sbjct: 1   MAAPAEAAEERASGGPRPPVCLLVLGMAGSGKTTFVQRLTGHLHSRGSPPYVVNLDPAVH 60

Query: 189 EV-PFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EV P+ +   IRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVXPYLSLSYIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 101


>ref|XP_851313.1| PREDICTED: similar to lysozyme [Canis familiaris].
          Length = 148

 Score =  165 bits (417), Expect = 1e-40
 Identities = 73/132 (55%), Positives = 98/132 (74%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAIN--HNVGSTDYGIFQ 555
           +AK++ +CE AR LK  GMDG+ G SLANWVC+A++ES+FNT+A N  ++ GS+DYGIFQ
Sbjct: 18  EAKIFSKCELARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQ 77

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           +NS++WC       A NAC+I C   LDD++  DI CAKRVV+DP G+ AWVAW  HC+ 
Sbjct: 78  LNSKWWCKSNSHSSA-NACNIMCSKFLDDNIDDDIACAKRVVKDPNGMSAWVAWVKHCKG 136

Query: 736 KDVSQYIRGCKL 771
           KD+S+Y+  C L
Sbjct: 137 KDLSKYLASCNL 148


>ref|NP_001184016.1| sperm acrosome membrane-associated protein 3 [Canis lupus
           familiaris].
          Length = 163

 Score =  142 bits (358), Expect = 7e-34
 Identities = 64/131 (48%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
           QA+VY RCE A++L+  GM+GYRG +LA+WVCLA + S FNT A++H   GST+ GIFQI
Sbjct: 34  QARVYSRCELAKVLQDFGMEGYRGYTLADWVCLAYFTSGFNTAAVDHEADGSTNNGIFQI 93

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NSR WC +  T +  N C + C  LL+ +L   + CA ++ + P G+ +W AWR HCQ K
Sbjct: 94  NSRKWCKNLNT-EVPNVCQMYCSDLLNPNLKDTVICAMKITQQPQGLASWEAWRRHCQGK 152

Query: 739 DVSQYIRGCKL 771
           D++ ++ GC L
Sbjct: 153 DLTDWVDGCDL 163


>ref|XP_538021.2| PREDICTED: similar to PNPK6288 [Canis familiaris].
          Length = 164

 Score =  137 bits (345), Expect = 2e-32
 Identities = 57/130 (43%), Positives = 92/130 (70%), Gaps = 1/130 (0%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
           AK+Y+RCE A  L+K+G++G++G S+ +W+C+A +ES F+T  ++HN  GS++YGIFQ+N
Sbjct: 25  AKIYERCELAMKLEKAGLNGFKGYSIEDWLCMAHYESGFDTSFVDHNPDGSSEYGIFQLN 84

Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
           S +WCN+G TP   N CH+ C+ LL+  +  DI CA++V     G+ AW +W  HC    
Sbjct: 85  SAWWCNNGVTP-TQNLCHMECRDLLNRHILDDILCARQVASSKNGMTAWDSWTRHCSGHY 143

Query: 742 VSQYIRGCKL 771
           +S++++GC +
Sbjct: 144 LSEWLKGCNM 153


>ref|XP_544211.2| PREDICTED: similar to lysozyme-like protein 2 [Canis familiaris].
          Length = 148

 Score =  134 bits (337), Expect = 2e-31
 Identities = 57/131 (43%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
           + K+Y RC+ A+I  ++G+D Y+G SL NW+C+A +ES +NT A      GS DYGIFQI
Sbjct: 18  EPKIYTRCKLAKIFLRAGLDNYQGFSLGNWICMAYYESRYNTTAETQLEDGSIDYGIFQI 77

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NS  WC   K  +  N CH++C  L+ DDL+  I CAK++ ++  G+  W  W+ HC+ K
Sbjct: 78  NSFTWCRRAKLQEK-NHCHVACSALITDDLTDAILCAKKIAKETEGMNYWQGWKKHCEGK 136

Query: 739 DVSQYIRGCKL 771
           D+S++ +GC++
Sbjct: 137 DLSEWKKGCEV 147


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,870,515
Number of extensions: 1192568
Number of successful extensions: 3476
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3459
Number of HSP's successfully gapped: 17
Length of query: 437
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 331
Effective length of database: 15,340,888
Effective search space: 5077833928
Effective search space used: 5077833928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000333
         (1311 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000230.1| lysozyme C precursor [Homo sapiens].                 213   2e-55
Alignment   gi|NP_009197.2| GPN-loop GTPase 1 isoform a [Homo sapiens].          186   4e-47
Alignment   gi|NP_995328.2| sperm acrosome-associated protein 5 precursor [...   142   5e-34
Alignment   gi|NP_001073369.1| sperm acrosome-associated protein 5 precurso...   142   5e-34
Alignment   gi|NP_776246.1| sperm acrosome membrane-associated protein 3 [H...   140   3e-33
Alignment   gi|NP_115906.3| lysozyme-like protein 1 [Homo sapiens].              136   4e-32
Alignment   gi|NP_001186880.1| lysozyme-like protein 6 precursor [Homo sapi...   134   2e-31
Alignment   gi|NP_065159.1| lysozyme-like protein 6 precursor [Homo sapiens].    134   2e-31
Alignment   gi|NP_898881.2| lysozyme-like protein 2 [Homo sapiens].              134   2e-31
Alignment   gi|NP_001138519.1| GPN-loop GTPase 1 isoform b [Homo sapiens].       133   3e-31

>ref|NP_000230.1| lysozyme C precursor [Homo sapiens].
          Length = 148

 Score =  213 bits (543), Expect = 2e-55
 Identities = 92/130 (70%), Positives = 110/130 (84%), Gaps = 2/130 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q KV++RCE AR LK+ GMDGYRG+SLANW+CLAKWES +NT+A N+N G  STDYGIFQ
Sbjct: 17  QGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INSRYWCNDGKTP AVNACH+SC  LL D+++  + CAKRVVRDP G++AWVAWR  CQN
Sbjct: 77  INSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQN 136

Query: 736 KDVSQYIRGC 765
           +DV QY++GC
Sbjct: 137 RDVRQYVQGC 146


>ref|NP_009197.2| GPN-loop GTPase 1 isoform a [Homo sapiens].
          Length = 388

 Score =  186 bits (472), Expect = 4e-47
 Identities = 91/101 (90%), Positives = 94/101 (93%)
 Frame = +3

Query: 6   KMAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAV 185
           KMAA  AA   QASGGPR P CLLVLGMAGSGKTTFVQRLTGHLH+QG+PPYVINLDPAV
Sbjct: 14  KMAASAAAAELQASGGPRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGTPPYVINLDPAV 73

Query: 186 HEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           HEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 74  HEVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 114


>ref|NP_995328.2| sperm acrosome-associated protein 5 precursor [Homo sapiens].
          Length = 159

 Score =  142 bits (359), Expect = 5e-34
 Identities = 58/130 (44%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
           AK+Y+RCE A  L+++G++GY+G  + +W+C+A +ES F+T  ++HN  GS++YGIFQ+N
Sbjct: 21  AKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHNPDGSSEYGIFQLN 80

Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
           S +WC++G TP   N CH+ C  LL+  +  DI CAK++V    G+ AW +WR HC   D
Sbjct: 81  SAWWCDNGITPTK-NLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSAWTSWRLHCSGHD 139

Query: 742 VSQYIRGCKL 771
           +S++++GC +
Sbjct: 140 LSEWLKGCDM 149


>ref|NP_001073369.1| sperm acrosome-associated protein 5 precursor [Homo sapiens].
          Length = 159

 Score =  142 bits (359), Expect = 5e-34
 Identities = 58/130 (44%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
           AK+Y+RCE A  L+++G++GY+G  + +W+C+A +ES F+T  ++HN  GS++YGIFQ+N
Sbjct: 21  AKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHNPDGSSEYGIFQLN 80

Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
           S +WC++G TP   N CH+ C  LL+  +  DI CAK++V    G+ AW +WR HC   D
Sbjct: 81  SAWWCDNGITPTK-NLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSAWTSWRLHCSGHD 139

Query: 742 VSQYIRGCKL 771
           +S++++GC +
Sbjct: 140 LSEWLKGCDM 149


>ref|NP_776246.1| sperm acrosome membrane-associated protein 3 [Homo sapiens].
          Length = 215

 Score =  140 bits (352), Expect = 3e-33
 Identities = 63/129 (48%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
           +AK+Y RCE AR+L   G+DGYRG SLA+WVCLA + S FN  A+++   GST+ GIFQI
Sbjct: 86  EAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYEADGSTNNGIFQI 145

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NSR WC++  TP   N C + C  LL+ +L   + CA ++ ++P G+  W AWR HCQ K
Sbjct: 146 NSRRWCSN-LTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGYWEAWRHHCQGK 204

Query: 739 DVSQYIRGC 765
           D+++++ GC
Sbjct: 205 DLTEWVDGC 213


>ref|NP_115906.3| lysozyme-like protein 1 [Homo sapiens].
          Length = 194

 Score =  136 bits (343), Expect = 4e-32
 Identities = 58/131 (44%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
           ++K+Y RC+ A+I  ++G+D Y G SL NW+C+A +ES +NT A    + GS DYGIFQI
Sbjct: 64  ESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYGIFQI 123

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NS  WC  GK  K  N CH++C  L+ DDL+  I CA+++V++  G+  W  W+ HC+ +
Sbjct: 124 NSFAWCRRGKL-KENNHCHVACSALITDDLTDAIICARKIVKETQGMNYWQGWKKHCEGR 182

Query: 739 DVSQYIRGCKL 771
           D+S++ +GC++
Sbjct: 183 DLSEWKKGCEV 193


>ref|NP_001186880.1| lysozyme-like protein 6 precursor [Homo sapiens].
          Length = 148

 Score =  134 bits (337), Expect = 2e-31
 Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
           QA +  RC+ A++L+   +DG+ G SL++W+CLA  ES FN   IN N  GS DYG+FQI
Sbjct: 18  QASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINENADGSFDYGLFQI 77

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NS YWCND K+  + N CH+ C+ LL+ +L   I CAKR+V    G+  WV WR HC  +
Sbjct: 78  NSHYWCNDYKS-YSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNNWVEWRLHCSGR 136

Query: 739 DVSQYIRGCKL 771
            +  ++ GC+L
Sbjct: 137 PLFYWLTGCRL 147


>ref|NP_065159.1| lysozyme-like protein 6 precursor [Homo sapiens].
          Length = 148

 Score =  134 bits (337), Expect = 2e-31
 Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
           QA +  RC+ A++L+   +DG+ G SL++W+CLA  ES FN   IN N  GS DYG+FQI
Sbjct: 18  QASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINENADGSFDYGLFQI 77

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NS YWCND K+  + N CH+ C+ LL+ +L   I CAKR+V    G+  WV WR HC  +
Sbjct: 78  NSHYWCNDYKS-YSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNNWVEWRLHCSGR 136

Query: 739 DVSQYIRGCKL 771
            +  ++ GC+L
Sbjct: 137 PLFYWLTGCRL 147


>ref|NP_898881.2| lysozyme-like protein 2 [Homo sapiens].
          Length = 194

 Score =  134 bits (336), Expect = 2e-31
 Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
           ++K+Y RC+ A+I  ++G+D Y G SL NW+C+A +ES +NT A    + GS DYGIFQI
Sbjct: 64  ESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYGIFQI 123

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NS  WC  GK  K  N CH++C  L+ DDL+  I CAK++V++  G+  W  W+ HC+ +
Sbjct: 124 NSFAWCRRGKL-KENNHCHVACSALVTDDLTDAIICAKKIVKETQGMNYWQGWKKHCEGR 182

Query: 739 DVSQYIRGCKL 771
           D+S + + C++
Sbjct: 183 DLSDWKKDCEV 193


>ref|NP_001138519.1| GPN-loop GTPase 1 isoform b [Homo sapiens].
          Length = 362

 Score =  133 bits (335), Expect = 3e-31
 Identities = 65/85 (76%), Positives = 72/85 (84%)
 Frame = +3

Query: 54  PRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVK 233
           PR    +L++      K  F +RLTGHLH+QG+PPYVINLDPAVHEVPFPANIDIRDTVK
Sbjct: 10  PRCTGIVLLI------KLRFSERLTGHLHAQGTPPYVINLDPAVHEVPFPANIDIRDTVK 63

Query: 234 YKEVMKQYGLGPNGGIVTSLNLFAS 308
           YKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 64  YKEVMKQYGLGPNGGIVTSLNLFAT 88


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,191,735
Number of extensions: 1187115
Number of successful extensions: 3394
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3364
Number of HSP's successfully gapped: 15
Length of query: 437
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 331
Effective length of database: 14,802,980
Effective search space: 4899786380
Effective search space used: 4899786380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000333
         (1311 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_059068.1| lysozyme C-2 precursor [Mus musculus].               214   2e-55
Alignment   gi|NP_038618.1| lysozyme C-1 precursor [Mus musculus].               208   7e-54
Alignment   gi|NP_598517.1| GPN-loop GTPase 1 [Mus musculus].                    180   2e-45
Alignment   gi|NP_084182.2| lysozyme C-like [Mus musculus].                      174   1e-43
Alignment   gi|NP_001078862.1| sperm acrosome-associated protein 5 precurso...   140   3e-33
Alignment   gi|NP_080368.1| lysozyme-like protein 1 precursor [Mus musculus].    139   4e-33
Alignment   gi|NP_083643.1| sperm acrosome membrane-associated protein 3 [M...   139   6e-33
Alignment   gi|NP_081359.1| lysozyme-like protein 6 precursor [Mus musculus].    135   5e-32
Alignment   gi|NP_081191.1| lysozyme-like protein 4 precursor [Mus musculus].    109   5e-24
Alignment   gi|NP_034809.1| alpha-lactalbumin precursor [Mus musculus].          104   2e-22

>ref|NP_059068.1| lysozyme C-2 precursor [Mus musculus].
          Length = 148

 Score =  214 bits (544), Expect = 2e-55
 Identities = 99/146 (67%), Positives = 117/146 (80%), Gaps = 2/146 (1%)
 Frame = +1

Query: 334 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 513
           MKT             QAKVY+RCEFAR LK++GM GY GVSLA+WVCLA+ ES++NT+A
Sbjct: 1   MKTLLTLGLLLLSVTAQAKVYERCEFARTLKRNGMAGYYGVSLADWVCLAQHESNYNTRA 60

Query: 514 INHNVG--STDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRD 687
            N+N G  STDYGIFQINSRYWCNDGKTP+AVNAC I+C  LL DD++  I+CAKRVVRD
Sbjct: 61  TNYNRGDQSTDYGIFQINSRYWCNDGKTPRAVNACGINCSALLQDDITAAIQCAKRVVRD 120

Query: 688 PLGVKAWVAWRAHCQNKDVSQYIRGC 765
           P G++AWVAWRAHCQN+D+SQYIR C
Sbjct: 121 PQGIRAWVAWRAHCQNRDLSQYIRNC 146


>ref|NP_038618.1| lysozyme C-1 precursor [Mus musculus].
          Length = 148

 Score =  208 bits (530), Expect = 7e-54
 Identities = 93/130 (71%), Positives = 112/130 (86%), Gaps = 2/130 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           QAKVY+RCE ARILK++GMDGYRGV LA+WVCLA+ ES++NT+A N+N G  STDYGIFQ
Sbjct: 17  QAKVYNRCELARILKRNGMDGYRGVKLADWVCLAQHESNYNTRATNYNRGDRSTDYGIFQ 76

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INSRYWCNDGKTP++ NAC I+C  LL DD++  I+CAKRVVRDP G++AWVAWR  CQN
Sbjct: 77  INSRYWCNDGKTPRSKNACGINCSALLQDDITAAIQCAKRVVRDPQGIRAWVAWRTQCQN 136

Query: 736 KDVSQYIRGC 765
           +D+SQYIR C
Sbjct: 137 RDLSQYIRNC 146


>ref|NP_598517.1| GPN-loop GTPase 1 [Mus musculus].
          Length = 372

 Score =  180 bits (457), Expect = 2e-45
 Identities = 87/100 (87%), Positives = 92/100 (92%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAP A + PQAS  P+ P CLLVLGMAGSGKTTFVQRLTGHLH++G PPYVINLDPAVH
Sbjct: 1   MAAPVAPSEPQASRAPQPPVCLLVLGMAGSGKTTFVQRLTGHLHNKGCPPYVINLDPAVH 60

Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100


>ref|NP_084182.2| lysozyme C-like [Mus musculus].
          Length = 151

 Score =  174 bits (441), Expect = 1e-43
 Identities = 76/132 (57%), Positives = 96/132 (72%), Gaps = 2/132 (1%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 555
           Q KVYDRC  AR L+  G+ G++G++LANWVCLAKWES+FNT     N    ST YGIFQ
Sbjct: 20  QGKVYDRCSLARTLQSLGLAGFQGITLANWVCLAKWESNFNTNTTRFNPEDQSTSYGIFQ 79

Query: 556 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQN 735
           INSR+WCNDGKTP + N C ISCK LL  ++   + CAKR+V+DP G+ +W  W  HC+N
Sbjct: 80  INSRFWCNDGKTPGSRNFCRISCKALLKSNIWSAVVCAKRIVKDPQGIYSWAGWIKHCKN 139

Query: 736 KDVSQYIRGCKL 771
           K++ +YIRGC L
Sbjct: 140 KNLKEYIRGCHL 151


>ref|NP_001078862.1| sperm acrosome-associated protein 5 precursor [Mus musculus].
          Length = 160

 Score =  140 bits (352), Expect = 3e-33
 Identities = 59/130 (45%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
           AK+Y+RCE A+ L+++G+DG++G ++ +W+C+A +ES F+T  ++HN  GS++YGIFQ+N
Sbjct: 21  AKIYERCELAKKLEEAGLDGFKGYTVGDWLCVAHYESGFDTSFVDHNPDGSSEYGIFQLN 80

Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
           S +WCN+G TP   N C+I C  LL+  +  DI CAKRV      +KAW +W  HC   D
Sbjct: 81  SAWWCNNGITP-TQNLCNIDCNDLLNRHILDDIICAKRVASSHKSMKAWDSWTQHCAGHD 139

Query: 742 VSQYIRGCKL 771
           +S++++GC +
Sbjct: 140 LSEWLKGCSV 149


>ref|NP_080368.1| lysozyme-like protein 1 precursor [Mus musculus].
          Length = 148

 Score =  139 bits (351), Expect = 4e-33
 Identities = 60/131 (45%), Positives = 92/131 (70%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 558
           ++K+Y RC+ A+I  K+G+D Y G +L NW+C+A +ES +NT A N    GSTDYGIFQI
Sbjct: 18  ESKIYTRCKLAKIFAKAGLDNYGGFALGNWLCMAYYESHYNTTAENVLEDGSTDYGIFQI 77

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NS  WC + +  +  N CH++C  L+ DDL+  I CAK++V++  G+  W  W+ +C+NK
Sbjct: 78  NSFTWCRNARKHQK-NHCHVACSALITDDLTDAILCAKKIVKETQGMNYWQGWKKNCENK 136

Query: 739 DVSQYIRGCKL 771
           D+S++ RGC++
Sbjct: 137 DMSEWKRGCEV 147


>ref|NP_083643.1| sperm acrosome membrane-associated protein 3 [Mus musculus].
          Length = 163

 Score =  139 bits (349), Expect = 6e-33
 Identities = 64/129 (49%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
           +AKV+ RCE A+ +   G+DGYRG +LA+WVCLA + S FNT A++H   GST+ GIFQI
Sbjct: 34  KAKVFSRCELAKEMHDFGLDGYRGYNLADWVCLAYYTSGFNTNAVDHEADGSTNNGIFQI 93

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           +SR WC         N C I C  LL++DL   I CA ++V++PLG+  W AWR HCQ +
Sbjct: 94  SSRRWCRT-LASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPLGLGYWEAWRHHCQGR 152

Query: 739 DVSQYIRGC 765
           D+S ++ GC
Sbjct: 153 DLSDWVDGC 161


>ref|NP_081359.1| lysozyme-like protein 6 precursor [Mus musculus].
          Length = 148

 Score =  135 bits (341), Expect = 5e-32
 Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
 Frame = +1

Query: 391 VYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQINSR 567
           +  RC  A+IL +  +DG+ G SL +W+CLA  ES+FN   +N NV GS DYGIFQINSR
Sbjct: 21  IIHRCSLAKILYEEDLDGFEGYSLPDWLCLAFVESNFNISKVNENVDGSFDYGIFQINSR 80

Query: 568 YWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKDVS 747
           YWCND ++  + N CH+ C+ LL  +L   I CAK++V  P G+K WV W+ HC  + +S
Sbjct: 81  YWCNDYQS-HSENFCHVDCQELLSPNLISTIHCAKKIVSGPGGMKNWVEWKLHCLGRPLS 139

Query: 748 QYIRGCKL 771
            ++ GC L
Sbjct: 140 YWMTGCHL 147


>ref|NP_081191.1| lysozyme-like protein 4 precursor [Mus musculus].
          Length = 145

 Score =  109 bits (272), Expect = 5e-24
 Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV--GSTDYGIFQI 558
           A +  RC  A++L   G++ + G SL NWVCLA +ES FN  A+  +   GST +G+FQI
Sbjct: 19  ASILGRCTVAKMLYDGGLNYFEGYSLENWVCLAYFESKFNPSAVYEDPQDGSTGFGLFQI 78

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
               WC  GK     N C +SC  LL+ +L   I+CAK++V+   G+ AW  W  +CQ  
Sbjct: 79  RDNEWCGHGK-----NLCSVSCTALLNPNLKDTIQCAKKIVKGKHGMGAWPIWSKNCQLS 133

Query: 739 DV-SQYIRGCKL 771
           DV  +++ GC L
Sbjct: 134 DVLDRWLDGCDL 145


>ref|NP_034809.1| alpha-lactalbumin precursor [Mus musculus].
          Length = 143

 Score =  104 bits (259), Expect = 2e-22
 Identities = 47/119 (39%), Positives = 75/119 (63%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQIN 561
           QA    +C+ +  +K   +DGY+G+SL  W C+    S ++T+A+ ++ GST+YG+FQI+
Sbjct: 19  QATELTKCKVSHAIKD--IDGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQIS 76

Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
            R+WC   + P++ N C ISC  LLDD+L  DI CAK+++    G+  W A++  C  K
Sbjct: 77  DRFWCKSSEFPESENICGISCDKLLDDELDDDIACAKKILAIK-GIDYWKAYKPMCSEK 134


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,386,169
Number of extensions: 1009675
Number of successful extensions: 2902
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2880
Number of HSP's successfully gapped: 12
Length of query: 437
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 333
Effective length of database: 12,493,815
Effective search space: 4160440395
Effective search space used: 4160440395
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000333
         (1311 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999557.2| lysozyme C-3 precursor [Sus scrofa].                 282   3e-76
Alignment   gi|XP_003125337.2| PREDICTED: GPN-loop GTPase 1-like [Sus scrof...   204   1e-52
Alignment   gi|NP_001171399.1| sperm acrosome membrane-associated protein 3...   149   3e-36
Alignment   gi|NP_001171401.1| sperm acrosome-associated protein 5 [Sus scr...   143   2e-34
Alignment   gi|XP_003130749.1| PREDICTED: lysozyme-like protein 1-like [Sus...   142   5e-34
Alignment   gi|XP_003132180.1| PREDICTED: lysozyme-like protein 4-like isof...   120   2e-27
Alignment   gi|XP_003132179.1| PREDICTED: lysozyme-like protein 4-like isof...   120   2e-27
Alignment   gi|NP_999525.1| alpha-lactalbumin precursor [Sus scrofa].            109   4e-24
Alignment   gi|NP_001230637.1| GPN-loop GTPase 3 [Sus scrofa].                    59   8e-09
Alignment   gi|XP_003127766.1| PREDICTED: GPN-loop GTPase 2-like [Sus scrof...    57   2e-08

>ref|NP_999557.2| lysozyme C-3 precursor [Sus scrofa].
          Length = 146

 Score =  282 bits (722), Expect = 3e-76
 Identities = 133/146 (91%), Positives = 133/146 (91%)
 Frame = +1

Query: 334 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 513
           MKT             QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA
Sbjct: 1   MKTLLVLALLLLSVSVQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 60

Query: 514 INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPL 693
           INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPL
Sbjct: 61  INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPL 120

Query: 694 GVKAWVAWRAHCQNKDVSQYIRGCKL 771
           GVKAWVAWRAHCQNKDVSQYIRGCKL
Sbjct: 121 GVKAWVAWRAHCQNKDVSQYIRGCKL 146


>ref|XP_003125337.2| PREDICTED: GPN-loop GTPase 1-like [Sus scrofa].
          Length = 373

 Score =  204 bits (518), Expect = 1e-52
 Identities = 99/100 (99%), Positives = 100/100 (100%)
 Frame = +3

Query: 9   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 188
           MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH
Sbjct: 1   MAAPEAATVPQASGGPRAPACLLVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVH 60

Query: 189 EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAS 308
           EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFA+
Sbjct: 61  EVPFPANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFAT 100


>ref|NP_001171399.1| sperm acrosome membrane-associated protein 3 [Sus scrofa].
          Length = 163

 Score =  149 bits (377), Expect = 3e-36
 Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 558
           QAKVY RCE AR+L+  G+DG+RG SLANWVCLA + S FNT A++H   GST+ GIFQI
Sbjct: 34  QAKVYSRCELARLLQDVGLDGFRGYSLANWVCLAYFASGFNTAAVDHEADGSTNSGIFQI 93

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NSR WC +   P  +N C + C  LL+ +L   I CA ++ +DP G+  W AWR HCQ K
Sbjct: 94  NSRKWCRN-LNPSVLNLCQMYCSDLLNPNLKDTIICAMKIAQDPKGLGTWEAWRHHCQGK 152

Query: 739 DVSQYIRGCKL 771
           D++ ++ GC L
Sbjct: 153 DLTDWVDGCDL 163


>ref|NP_001171401.1| sperm acrosome-associated protein 5 [Sus scrofa].
          Length = 160

 Score =  143 bits (361), Expect = 2e-34
 Identities = 62/140 (44%), Positives = 95/140 (67%), Gaps = 1/140 (0%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 561
           AK+Y+RCE A  L+K+G+DG++G +  +W+C+A +ES F+T  +NHN  GS++YGIFQ+N
Sbjct: 21  AKIYERCELATKLEKAGLDGFKGYTTGDWLCMAHYESGFDTSFVNHNPDGSSEYGIFQLN 80

Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNKD 741
           S +WC++G TP   N CH+ C  LL+  +  DI CA++VV    G+ AW +W  HC   D
Sbjct: 81  SAWWCDNGVTPTQ-NLCHMECHELLNRHILDDIMCAQQVVSSQEGMNAWDSWSQHCSGHD 139

Query: 742 VSQYIRGCKL*LCSFPSSAH 801
           +S++++GC L +   P   H
Sbjct: 140 LSEWLKGCHLNVKPDPKRIH 159


>ref|XP_003130749.1| PREDICTED: lysozyme-like protein 1-like [Sus scrofa].
          Length = 148

 Score =  142 bits (357), Expect = 5e-34
 Identities = 61/131 (46%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA-INHNVGSTDYGIFQI 558
           + K+Y RC+ A+I  ++G+D YRG SL NW+C+A +ES +NT A  N   GSTDYGIFQI
Sbjct: 18  EPKIYTRCKLAKIFSRAGLDNYRGFSLGNWICMAYYESHYNTTAQTNLEDGSTDYGIFQI 77

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           NS  WC   K  +  N CH++C  L+ DDL+  I CAK++V++  G+  W  W+ HC+ K
Sbjct: 78  NSYTWCRREKLQEK-NHCHVACSALITDDLTDAIICAKKIVKETEGMNYWQGWKNHCEGK 136

Query: 739 DVSQYIRGCKL 771
           D+S++ +GC++
Sbjct: 137 DLSEWKKGCEV 147


>ref|XP_003132180.1| PREDICTED: lysozyme-like protein 4-like isoform 2 [Sus scrofa].
          Length = 145

 Score =  120 bits (300), Expect = 2e-27
 Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQI 558
           A V  RC  A+ L + G+  Y G SL NWVCLA +ES FN  A+  N+    T YG+FQI
Sbjct: 19  AAVLGRCVVAKKLHEGGLSDYEGYSLENWVCLAYFESKFNPTAVYDNLRGDYTGYGLFQI 78

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
            +  WC+ GK     N CH+SC  LL+ +L + I+CAK++V+   G+ AW +W  +CQN 
Sbjct: 79  RNHDWCDHGK-----NRCHVSCSALLNPNLKETIKCAKKIVQGKRGMGAWPSWTLNCQNS 133

Query: 739 D-VSQYIRGCKL 771
           D +++++ GCKL
Sbjct: 134 DTLARWLDGCKL 145


>ref|XP_003132179.1| PREDICTED: lysozyme-like protein 4-like isoform 1 [Sus scrofa].
          Length = 145

 Score =  120 bits (300), Expect = 2e-27
 Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 3/132 (2%)
 Frame = +1

Query: 385 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQI 558
           A V  RC  A+ L + G+  Y G SL NWVCLA +ES FN  A+  N+    T YG+FQI
Sbjct: 19  AAVLGRCVVAKKLHEGGLSDYEGYSLENWVCLAYFESKFNPTAVYDNLRGDYTGYGLFQI 78

Query: 559 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
            +  WC+ GK     N CH+SC  LL+ +L + I+CAK++V+   G+ AW +W  +CQN 
Sbjct: 79  RNHDWCDHGK-----NRCHVSCSALLNPNLKETIKCAKKIVQGKRGMGAWPSWTLNCQNS 133

Query: 739 D-VSQYIRGCKL 771
           D +++++ GCKL
Sbjct: 134 DTLARWLDGCKL 145


>ref|NP_999525.1| alpha-lactalbumin precursor [Sus scrofa].
          Length = 141

 Score =  109 bits (272), Expect = 4e-24
 Identities = 52/119 (43%), Positives = 78/119 (65%)
 Frame = +1

Query: 382 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQIN 561
           QAK + +CE +++LK   MDGY  ++L  W+C     S ++TK I H+ GST+YG+FQIN
Sbjct: 18  QAKQFTKCELSQVLKD--MDGYGDITLPEWICTIFHISGYDTKTIVHDNGSTEYGLFQIN 75

Query: 562 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPLGVKAWVAWRAHCQNK 738
           ++ WC D +  ++ N C ISC   LDDDL+ D+ CAK+++ D  G+  W+A +A C  K
Sbjct: 76  NKLWCRDNQI-QSKNICGISCDKFLDDDLTDDMMCAKKIL-DNEGIDYWLAHKALCSEK 132


>ref|NP_001230637.1| GPN-loop GTPase 3 [Sus scrofa].
          Length = 284

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
 Frame = +3

Query: 75  LVLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQ 254
           LV+G AGSGK+T+   +  H  +      V+NLDPA     +    DIR+ ++  +VM+ 
Sbjct: 7   LVMGPAGSGKSTYCATMVQHCEALNRSVQVVNLDPAAEHFSYSVMADIRELIEVDDVMED 66

Query: 255 YGL--GPNGGIVTSLNLFAS 308
             L  GPNGG+V  +  FA+
Sbjct: 67  NTLQFGPNGGLVFCMEYFAN 86


>ref|XP_003127766.1| PREDICTED: GPN-loop GTPase 2-like [Sus scrofa].
          Length = 310

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +3

Query: 78  VLGMAGSGKTTFVQRLTGHLHSQGSPPYVINLDPAVHEVPFPANIDIRDTVKYKEVMKQY 257
           V+G  GSGKTT+   ++  L + G    V+NLDPA   +P+   +D+ + V   +VM + 
Sbjct: 14  VIGPPGSGKTTYCLGMSEFLRALGRRVAVVNLDPANEGLPYECAVDVGELVGLSDVMDEL 73

Query: 258 GLGPNGGIV 284
            LGPNGG++
Sbjct: 74  QLGPNGGLL 82


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,506,511
Number of extensions: 739804
Number of successful extensions: 2228
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2209
Number of HSP's successfully gapped: 10
Length of query: 437
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 335
Effective length of database: 8,804,438
Effective search space: 2949486730
Effective search space used: 2949486730
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000333
         (1311 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1162   0.0  
Sscrofa_Chr03                                                         236   2e-59

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1162 bits (586), Expect = 0.0
 Identities = 602/606 (99%), Gaps = 1/606 (0%)
 Strand = Plus / Minus

                                                                            
Query: 707      gggtggcatggagagctcattgtcagaacaaagatgtctcgcagtacattcggggttgca 766
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36180016 gggtggcatggagagctcattgtcagaacaaagatgtctcgcagtacattcggggttgca 36179957

                                                                            
Query: 767      aactgtaactgtgcagttttccttcttcagctcaccttgtctctttttcatatttaggaa 826
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179956 aactgtaactgtgcagttttccttcttcagctcaccttgtctctttttcatatttaggaa 36179897

                                                                            
Query: 827      ataatagttgaatgaaaggtcatactaccattcttgcgaacaaatcatggttttaccgaa 886
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179896 ataatagttgaatgaaaggtcatactaccattcttgcgaacaaatcatggttttaccgaa 36179837

                                                                            
Query: 887      gcaagagcataaggtctttctttaagaggcttaatgtttacctaatgtgtttattgtttg 946
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179836 gcaagagcataaggtctttctttaagaggcttaatgtttacctaatgtgtttattgtttg 36179777

                                                                            
Query: 947      tgtttattgttttataggcctacaatatttttcaatttgctaagagaattattgttggtc 1006
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179776 tgtttattgttttataggcctacaatatttttcaatttgctaagagaattattgttggtc 36179717

                                                                            
Query: 1007     tgaaatcttaattatcaaatatacctccagtacattcagttcttaatcaaagaaataaac 1066
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179716 tgaaatcttaattatcaaatatacctccagtacattcagttcttaatcaaagaaataaac 36179657

                                                                            
Query: 1067     cagaaacagtcttcatctgttcagttatctctaaaaacagtaaaagataaccagtctttg 1126
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179656 cagaaacagtcttcatctgttcagttatctctaaaaacagtaaaagataaccagtctttg 36179597

                                                                            
Query: 1127     ttgggtaatataaaattttaaaaggagcagaatgccagatggcttaaaatgaagacaacc 1186
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 36179596 ttgggtaatataaaattttaaaaggagcagaatgccagatggctaaaaatgaagacaacc 36179537

                                                                            
Query: 1187     tgaattaagaattttgctttcataaagtgtgacctttggcttaaatgttttctcaaagat 1246
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 36179536 tgaattaagaattttgctttcataaagtgtgacctttggcttaaatgttttctcagagat 36179477

                                                                            
Query: 1247     gattcgttcatttaaacgaattttaaaatagtctcac-atttaggtatccatctctttta 1305
                |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 36179476 gattcgttcattaaaacgaattttaaaatagtctcacaatttaggtatccatctctttta 36179417

                      
Query: 1306     gccttt 1311
                ||||||
Sbjct: 36179416 gccttt 36179411



 Score =  327 bits (165), Expect = 9e-87
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                            
Query: 306      agcctggagccccggcttctcagacaacatgaagactctcctcgttcttgcgcttctcct 365
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185516 agcctggagccccggcttctcagacaacatgaagactctcctcgttcttgcgcttctcct 36185457

                                                                            
Query: 366      cctttctgtctctgtacaggccaaggtctatgatcggtgcgagttcgccagaattctgaa 425
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185456 cctttctgtctctgtacaggccaaggtctatgatcggtgcgagttcgccagaattctgaa 36185397

                                                             
Query: 426      aaagtctggcatggacggctataggggagtcagcctggcgaactg 470
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185396 aaagtctggcatggacggctataggggagtcagcctggcgaactg 36185352



 Score =  315 bits (159), Expect = 3e-83
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                            
Query: 470      gggtgtgtttggccaagtgggaaagtgattttaacacaaaagctataaaccacaatgttg 529
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36183202 gggtgtgtttggccaagtgggaaagtgattttaacacaaaagctataaaccacaatgttg 36183143

                                                                            
Query: 530      gaagcactgattatggaatatttcaaattaatagccgctactggtgtaatgatggcaaga 589
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36183142 gaagcactgattatggaatatttcaaattaatagccgctactggtgtaatgatggcaaga 36183083

                                                       
Query: 590      cacccaaagcagttaatgcctgtcacatatcctgcaaag 628
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 36183082 cacccaaagcagttaatgcctgtcacatatcctgcaaag 36183044



 Score =  163 bits (82), Expect = 3e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                            
Query: 627      agttttgctggacgatgacctcagtcaagatatagaatgtgcaaagagggttgtcagaga 686
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36181081 agttttgctggacgatgacctcagtcaagatatagaatgtgcaaagagggttgtcagaga 36181022

                                      
Query: 687      tccactaggcgttaaagcatgg 708
                ||||||||||||||||||||||
Sbjct: 36181021 tccactaggcgttaaagcatgg 36181000


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  236 bits (119), Expect = 2e-59
 Identities = 119/119 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         ggagcaagatggctgcgcccgaagctgccacggtgccgcaagcttccgggggtccccggg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118531374 ggagcaagatggctgcgcccgaagctgccacggtgccgcaagcttccgggggtccccggg 118531315

                                                                            
Query: 61        ctccggcgtgcctgttggtgctgggaatggcggggtctgggaaaaccacctttgtacag 119
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118531314 ctccggcgtgcctgttggtgctgggaatggcggggtctgggaaaaccacctttgtacag 118531256



 Score =  192 bits (97), Expect = 3e-46
 Identities = 97/97 (100%)
 Strand = Plus / Minus

                                                                             
Query: 117       cagaggctcaccggacatctgcatagtcaaggctctccaccttatgtgatcaacctggac 176
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118530566 cagaggctcaccggacatctgcatagtcaaggctctccaccttatgtgatcaacctggac 118530507

                                                      
Query: 177       ccagctgtgcatgaagttccctttcctgccaatattg 213
                 |||||||||||||||||||||||||||||||||||||
Sbjct: 118530506 ccagctgtgcatgaagttccctttcctgccaatattg 118530470



 Score =  105 bits (53), Expect = 6e-20
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                      
Query: 254       gtatggacttggaccgaacggcggcatagtgacctcactcaatctctttgcta 306
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118526517 gtatggacttggaccgaacggcggcatagtgacctcactcaatctctttgcta 118526465



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                              
Query: 213       gatattcgtgacactgtgaagtataaagaagtcatgaaacagtat 257
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118527340 gatattcgtgacactgtgaagtataaagaagtcatgaaacagtat 118527296


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,318,161
Number of extensions: 368
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 8
Length of query: 1311
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1290
Effective length of database: 2,808,413,156
Effective search space: 3622852971240
Effective search space used: 3622852971240
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)