Animal-Genome cDNA 20110601C-000400


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000400
         (1758 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,007,255
Number of extensions: 867663
Number of successful extensions: 1543
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1543
Number of HSP's successfully gapped: 0
Length of query: 586
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 478
Effective length of database: 14,107,870
Effective search space: 6743561860
Effective search space used: 6743561860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000400
         (1758 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853792.1| PREDICTED: similar to prothymosin, alpha (gene ...    71   1e-13
Alignment   gi|XP_851295.1| PREDICTED: hypothetical protein XP_846202 [Cani...    50   5e-08

>ref|XP_853792.1| PREDICTED: similar to prothymosin, alpha (gene sequence 28) [Canis
           familiaris].
          Length = 189

 Score = 70.9 bits (172), Expect(2) = 1e-13
 Identities = 39/60 (65%), Positives = 43/60 (71%)
 Frame = +3

Query: 174 PLXXXXXXXRLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKDL 353
           P+        L   RGLRQL RQSP T A  F RC+GSPACPIMS+A+VDTSSEITTKDL
Sbjct: 39  PVVATTSAAHLLHHRGLRQLPRQSPRTLA-LFNRCMGSPACPIMSEASVDTSSEITTKDL 97



 Score = 25.0 bits (53), Expect(2) = 1e-13
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +2

Query: 122 PTGWSEKPSLH 154
           PTG SEKPSLH
Sbjct: 22  PTGCSEKPSLH 32



 Score = 70.9 bits (172), Expect(2) = 3e-12
 Identities = 39/60 (65%), Positives = 43/60 (71%)
 Frame = +3

Query: 1443 PLXXXXXXXRLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKDL 1622
            P+        L   RGLRQL RQSP T A  F RC+GSPACPIMS+A+VDTSSEITTKDL
Sbjct: 39   PVVATTSAAHLLHHRGLRQLPRQSPRTLA-LFNRCMGSPACPIMSEASVDTSSEITTKDL 97



 Score = 20.4 bits (41), Expect(2) = 3e-12
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 1397 GWSEKPSLH 1423
            G SEKPSLH
Sbjct: 24   GCSEKPSLH 32


>ref|XP_851295.1| PREDICTED: hypothetical protein XP_846202 [Canis familiaris].
          Length = 169

 Score = 50.4 bits (119), Expect(2) = 5e-08
 Identities = 30/50 (60%), Positives = 34/50 (68%)
 Frame = +3

Query: 201 RLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKD 350
           RL  RR L +  R S  + A    RCI SPACPI+SDAAVDTSSE+ TKD
Sbjct: 26  RLPVRRNLLRH-RDSRSSLAGGLERCIASPACPIVSDAAVDTSSEMATKD 74



 Score = 26.6 bits (57), Expect(2) = 5e-08
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 122 PTGWSEKPSLHC 157
           PTG SE PSLHC
Sbjct: 11  PTGCSENPSLHC 22



 Score = 50.4 bits (119), Expect(2) = 1e-06
 Identities = 30/50 (60%), Positives = 34/50 (68%)
 Frame = +3

Query: 1470 RLFCRRGLRQLCRQSPWTPASFFIRCIGSPACPIMSDAAVDTSSEITTKD 1619
            RL  RR L +  R S  + A    RCI SPACPI+SDAAVDTSSE+ TKD
Sbjct: 26   RLPVRRNLLRH-RDSRSSLAGGLERCIASPACPIVSDAAVDTSSEMATKD 74



 Score = 21.9 bits (45), Expect(2) = 1e-06
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 1397 GWSEKPSLHC 1426
            G SE PSLHC
Sbjct: 13   GCSENPSLHC 22


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,399,837
Number of extensions: 661553
Number of successful extensions: 1569
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1566
Number of HSP's successfully gapped: 8
Length of query: 586
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 478
Effective length of database: 15,274,216
Effective search space: 7301075248
Effective search space used: 7301075248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000400
         (1758 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,650,390
Number of extensions: 637874
Number of successful extensions: 1569
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1569
Number of HSP's successfully gapped: 0
Length of query: 586
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 478
Effective length of database: 14,737,052
Effective search space: 7044310856
Effective search space used: 7044310856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000400
         (1758 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,330,365
Number of extensions: 552794
Number of successful extensions: 1469
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1468
Number of HSP's successfully gapped: 0
Length of query: 586
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 479
Effective length of database: 12,403,707
Effective search space: 5941375653
Effective search space used: 5941375653
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000400
         (1758 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,891,475
Number of extensions: 881341
Number of successful extensions: 925
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 0
Length of query: 586
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 482
Effective length of database: 8,754,644
Effective search space: 4219738408
Effective search space used: 4219738408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000400
         (1758 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         361   9e-97
gb|GL894918.2| Sus scrofa unplaced genomic scaffold ChrUScaf2802      224   1e-55
Sscrofa_Chr05                                                         210   2e-51
Sscrofa_ChrX                                                          198   7e-48
Sscrofa_Chr07                                                         186   3e-44
Sscrofa_Chr10                                                         143   4e-31
Sscrofa_Chr01                                                         127   2e-26
Sscrofa_Chr04                                                         100   5e-18

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  361 bits (182), Expect = 9e-97
 Identities = 228/242 (94%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                            
Query: 220      gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 279
                |||||| |||||||| || ||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 49680347 gactcccgcagctttatcaccagagtccttggactcccacttcctttttaatccgctgca 49680406

                                                                            
Query: 280      tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 339
                || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 49680407 tcagatcaccggcgtgccccatcatgtcagatgcggctgtggacaccagctccgagatca 49680466

                                                                            
Query: 340      ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagagg 399
                 |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 49680467 tcaccaaggacttaaaa-agaagaaggaagttgtggaggaggcggagagtgggagagagg 49680525

                                                                            
Query: 400      cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 459
                ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 49680526 cccctgctaatgggaatgctaatgaggaaaatggggagcaggagactgacaatgaggtag 49680585

                  
Query: 460      at 461
                ||
Sbjct: 49680586 at 49680587



 Score =  339 bits (171), Expect = 3e-90
 Identities = 226/243 (93%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1489     gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 1548
                |||||| |||||||| || ||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 49680347 gactcccgcagctttatcaccagagtccttggactcccacttcctttttaatccgctgca 49680406

                                                                            
Query: 1549     tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 1608
                || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 49680407 tcagatcaccggcgtgccccatcatgtcagatgcggctgtggacaccagctccgagatca 49680466

                                                                            
Query: 1609     ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaagg 1668
                 |||||||||||||||| ||||||||||||| |||||||||||||| | ||||| | |||
Sbjct: 49680467 tcaccaaggacttaaaa-agaagaaggaagttgtggaggaggcggagagtgggagagagg 49680525

                                                                            
Query: 1669     cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 1728
                ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 49680526 cccctgctaatgggaatgctaatgaggaaaatggggagcaggagactgacaatgaggtag 49680585

                   
Query: 1729     atg 1731
                |||
Sbjct: 49680586 atg 49680588



 Score =  280 bits (141), Expect = 3e-72
 Identities = 188/203 (92%), Gaps = 3/203 (1%)
 Strand = Plus / Plus

                                                                            
Query: 690      ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
                ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 49681079 ccaccgtgacctattcaccctccacttcctgtctcagaagaatcctaaacatggtcacct 49681138

                                                                            
Query: 750      tcgagtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgt 809
                |||||||||||||||||||||| || |||||| ||||||||||   | ||||||||||||
Sbjct: 49681139 tcgagtagagagtcgcctgcccacctgcccactgcgggcagcg---cgcgcagatgacgt 49681195

                                                                            
Query: 810      gcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaag 869
                | |||||||||||||||||||||||||||| |||||||||| |||| | |||||| ||||
Sbjct: 49681196 gtgctctccaccaccccaccaaaaccacaatgtgaatttgcaacagcggaggaaaaaaag 49681255

                                       
Query: 870      aaccaaaacttccaaggccctgc 892
                |||||||||||||||||||||||
Sbjct: 49681256 aaccaaaacttccaaggccctgc 49681278



 Score =  222 bits (112), Expect = 5e-55
 Identities = 211/242 (87%), Gaps = 4/242 (1%)
 Strand = Plus / Plus

                                                                            
Query: 219      ggactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgc 278
                |||||| ||||||||| | | ||||||||||||||||| ||| ||||||  ||| |||||
Sbjct: 81576567 ggactctggcagctttattgtcagagtccttggactcctgct-ccttttcaatctgctgc 81576625

                                                                            
Query: 279      atcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatc 338
                || | |||||| || ||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 81576626 attgtatcaccagcatgccccatcatgtcagatgcagccatggacaccagctccgagatc 81576685

                                                                            
Query: 339      accaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagag 398
                ||||||||||||||||||   ||| |||| || |  || |||| |||||||| |||||||
Sbjct: 81576686 accaccaaggacttaaaa---aaggaggatgttgcagatgaggtggagaatgagagagag 81576742

                                                                            
Query: 399      gcccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggta 458
                || | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 81576743 gcacatgctaatgggaatgctaatgaggaaaatggtgagcaggaggctgacaatgaggta 81576802

                  
Query: 459      ga 460
                ||
Sbjct: 81576803 ga 81576804



 Score =  198 bits (100), Expect = 7e-48
 Identities = 208/242 (85%), Gaps = 4/242 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1488     ggactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgc 1547
                |||||| ||||||||| | | ||||||||||||||||| ||| ||||||  ||| |||||
Sbjct: 81576567 ggactctggcagctttattgtcagagtccttggactcctgct-ccttttcaatctgctgc 81576625

                                                                            
Query: 1548     atcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatc 1607
                || | |||||| || ||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 81576626 attgtatcaccagcatgccccatcatgtcagatgcagccatggacaccagctccgagatc 81576685

                                                                            
Query: 1608     accaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaag 1667
                ||||||||||||||||||   ||| |||| || |  || |||| ||| |||| || | ||
Sbjct: 81576686 accaccaaggacttaaaa---aaggaggatgttgcagatgaggtggagaatgagagagag 81576742

                                                                            
Query: 1668     gcccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggta 1727
                || | ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 81576743 gcacatgctaatgggaatgctaatgaggaaaatggtgagcaggaggctgacaatgaggta 81576802

                  
Query: 1728     ga 1729
                ||
Sbjct: 81576803 ga 81576804



 Score =  170 bits (86), Expect = 2e-39
 Identities = 116/126 (92%)
 Strand = Plus / Plus

                                                                            
Query: 959      gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
                |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 81577279 gtacatattgttaggggtcagccatttttaatgatctcagatgaccaaaccagcctttgg 81577338

                                                                            
Query: 1019     agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
                ||| ||  ||| ||||||||| ||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 81577339 agcatttgctgccctacttctaacttttcttgtggtgtgactatgttcattattatctca 81577398

                      
Query: 1079     aaggag 1084
                ||||||
Sbjct: 81577399 aaggag 81577404



 Score =  153 bits (77), Expect = 4e-34
 Identities = 104/113 (92%)
 Strand = Plus / Plus

                                                                            
Query: 547      ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
                ||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct: 81576879 ctgaggcagctacagacaaacgggcagctgaagatgatgaggatgacaatgttgacacca 81576938

                                                                     
Query: 607      agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaagctaaaa 659
                | ||||| ||||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct: 81576939 aaaagcaaaagactgatgaggatgaccagatagcaaaaaaggaaaagctaaaa 81576991



 Score =  143 bits (72), Expect = 4e-31
 Identities = 163/191 (85%), Gaps = 3/191 (1%)
 Strand = Plus / Plus

                                                                            
Query: 697      gacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcaccttcgagta 756
                |||| |||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||
Sbjct: 81577024 gacccattcaccctccacttcccatctcagaagaatcctaaccctggtcaccttcaagta 81577083

                                                                            
Query: 757      gagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgtgcgctct 816
                ||||||  |||||| |||| ||||| || ||||| | |||| ||||||||| | ||||||
Sbjct: 81577084 gagagt--cctgcctgcccacccactgcaggcagtgtcacctgcagatgacatacgctct 81577141

                                                                            
Query: 817      ccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaagaaccaaa 876
                | ||||||  |||||||| || | |||||||||| |||||| |||||| ||| |||| ||
Sbjct: 81577142 ctaccacctgaccaaaactac-atgtgaatttgcaacaggggaggaaaaaaaaaacccaa 81577200

                           
Query: 877      acttccaaggc 887
                |||| ||||||
Sbjct: 81577201 acttacaaggc 81577211



 Score =  125 bits (63), Expect = 9e-26
 Identities = 92/104 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1131     caatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataag 1190
                |||||||||||| ||||||||| ||||       |||||||||||| |||||||| ||||
Sbjct: 49681494 caatcttattccaagcattccagtaacttcttttgtgtatgtactttgctgtactctaag 49681553

                                                            
Query: 1191     tagttggtttgtatgagatggttaaaaaggccaaagataaaagg 1234
                ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 49681554 tagttggcttgtatgagatggttaaaaaggccaaagataaaagg 49681597



 Score =  109 bits (55), Expect = 5e-21
 Identities = 105/126 (83%), Gaps = 18/126 (14%)
 Strand = Plus / Plus

                                                                            
Query: 959      gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
                ||||||||||||||||||||||| |||||||||||| ||||||||||||||||       
Sbjct: 49681346 gtacatattgttaggggtcagccgtttttaatgatcccggatgaccaaaccag------- 49681398

                                                                            
Query: 1019     agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
                           ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 49681399 -----------tcctacttctgactttacttgtggtgtgaccatgttcattatactctca 49681447

                      
Query: 1079     aaggag 1084
                ||||||
Sbjct: 49681448 aaggag 49681453



 Score =  105 bits (53), Expect = 8e-20
 Identities = 65/69 (94%)
 Strand = Plus / Plus

                                                                            
Query: 594      gatgtggacaccaagaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaag 653
                |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 49680705 gatgaggacaccaagaagcagaagatggatgaggatgactagacagcaaaaaaggaaaag 49680764

                         
Query: 654      ctaaaactt 662
                 ||||||||
Sbjct: 49680765 ttaaaactt 49680773



 Score =  105 bits (53), Expect = 8e-20
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1286     ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattt 1338
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49681653 ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattt 49681705



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 60/63 (95%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1299     tatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgc-tgagttgttct 1357
                |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 81577620 tatgcgtgaaacaatgttgtccaacaataaactggaattttattttgcttgagttgttct 81577679

                   
Query: 1358     aac 1360
                |||
Sbjct: 81577680 aac 81577682



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1165     gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
                ||||||||||||||||||| ||||||  | ||||||| |||| ||| |||||||| ||||
Sbjct: 81577477 gtgtatgtacttagctgtattataagaggctggtttgcatgacatgcttaaaaagaccaa 81577536

                        
Query: 1225     agataaaa 1232
                ||||||||
Sbjct: 81577537 agataaaa 81577544



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 125      actggctggtctgaaaagccatctttgcattgtt 158
                |||||||||||||||||||||| |||||||||||
Sbjct: 49680245 actggctggtctgaaaagccatttttgcattgtt 49680278


>gb|GL894918.2| Sus scrofa unplaced genomic scaffold ChrUScaf2802
          Length = 34004

 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Minus

                                                                        
Query: 972  ggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctctgtc 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6098 ggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctctgtc 6039

                                                                 
Query: 1032 ctacttctgactttacttgtggtgtgaccatgttcattataatctcaaaggag 1084
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6038 ctacttctgactttacttgtggtgtgaccatgttcattataatctcaaaggag 5986



 Score =  149 bits (75), Expect = 6e-33
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                        
Query: 345  aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7597 aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 7538

                           
Query: 405  gctaatggcaatgct 419
            |||||||||||||||
Sbjct: 7537 gctaatggcaatgct 7523



 Score =  145 bits (73), Expect = 9e-32
 Identities = 73/73 (100%)
 Strand = Plus / Minus

                                                                        
Query: 586  aggacgacgatgtggacaccaagaagcagaagaccgatgaggatgactagacagcaaaaa 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172 aggacgacgatgtggacaccaagaagcagaagaccgatgaggatgactagacagcaaaaa 6113

                         
Query: 646  aggaaaagctaaa 658
            |||||||||||||
Sbjct: 6112 aggaaaagctaaa 6100



 Score =  125 bits (63), Expect = 9e-26
 Identities = 72/75 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1614 aaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccct 1673
            ||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct: 7597 aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 7538

                           
Query: 1674 gctaatggcaatgct 1688
            |||||||||||||||
Sbjct: 7537 gctaatggcaatgct 7523



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 47/47 (100%)
 Strand = Plus / Minus

                                                           
Query: 1314 gttgtccaacaataaaccggaattttattttgctgagttgttctaac 1360
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5771 gttgtccaacaataaaccggaattttattttgctgagttgttctaac 5725



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 1131 caatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataag 1190
            |||||||||||||||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 5939 caatcttattccgagcattccaataactttttttgtgtatgtacttagctgtactataag 5880

                    
Query: 1191 tagttggt 1198
            ||||||||
Sbjct: 5879 tagttggt 5872



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                       
Query: 1689 aatgaggaaaatggggagcaggaggctgacaatgaggtagatg 1731
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7258 aatgaggaaaatggggagcaggaggctgacaatgaggtagatg 7216



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                       
Query: 121  ccccactggctggtctgaaaagccatctttgcattgttcccgt 163
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8750 ccccactggctggtctgaaaagccatctttgcattgttcccgt 8708



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                      
Query: 547  ctgaggcagctacaggcaaacgggcagctgaagatgatgagg 588
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6484 ctgaggcagctacaggcaaacgggcagctgaagatgatgagg 6443



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                      
Query: 420  aatgaggaaaatggggagcaggaggctgacaatgaggtagat 461
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7258 aatgaggaaaatggggagcaggaggctgacaatgaggtagat 7217



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                  
Query: 1395 ctggctggtctgaaaagccatctttgcattgttcccgt 1432
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 8745 ctggctggtctgaaaagccatctttgcattgttcccgt 8708


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  210 bits (106), Expect = 2e-51
 Identities = 193/222 (86%), Gaps = 5/222 (2%)
 Strand = Plus / Plus

                                                                            
Query: 239      ccagagtccttggactcccgcttccttttttatccgctgcatcggatcaccggcgtgccc 298
                |||||||||||||||||||||||| ||||| |||||||||||| |||||||  |||| ||
Sbjct: 96987310 ccagagtccttggactcccgcttcttttttaatccgctgcatcagatcacccacgtgtcc 96987369

                                                                            
Query: 299      catcatgtcagacgcggccgtggacaccagctccgagatcaccaccaaggacttaaaaga 358
                |||| ||||||| | |||| |||||| ||||||| ||||||||| |||||||||     |
Sbjct: 96987370 catcctgtcagatgtggccatggacaacagctccaagatcaccatcaaggactt-----a 96987424

                                                                            
Query: 359      gaagaaggaagtcgtggaggaggcggagaatgggagagaggcccctgctaatggcaatgc 418
                |||||||||||| |||||||| || |||| ||| |||||| | ||||||||| | |||||
Sbjct: 96987425 gaagaaggaagttgtggaggaagcagagagtggaagagagacacctgctaataggaatgc 96987484

                                                          
Query: 419      taatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
                |||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 96987485 taatgaggaaaatggggagcagaaggctgacaatgacgtaga 96987526



 Score =  186 bits (94), Expect = 3e-44
 Identities = 201/236 (85%), Gaps = 3/236 (1%)
 Strand = Plus / Plus

                                                                            
Query: 228      cagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcggatca 287
                ||||||||| |||||||||||||||||||| ||| |||| | ||| |||||||||||  |
Sbjct: 35900734 cagctttgttgccagagtccttggactcccactttctttgtaatctgctgcatcggacta 35900793

                                                                            
Query: 288      ccggcgtgccccatcatgtcagacgcg---gccgtggacaccagctccgagatcaccacc 344
                | ||| ||||||||||||||||| ||    |||||||  |||||||||||||||||||||
Sbjct: 35900794 ctggcctgccccatcatgtcagaagcccaagccgtgggtaccagctccgagatcaccacc 35900853

                                                                            
Query: 345      aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 404
                ||||||||| |||||||||||||||| |||||||||||| | || | ||||||||| | |
Sbjct: 35900854 aaggacttacaagagaagaaggaagttgtggaggaggcgaaaaacgagagagaggcacat 35900913

                                                                        
Query: 405      gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
                 || |||| ||||| | | || ||| |||||| ||||||||||||| |||||||||
Sbjct: 35900914 tctgatgggaatgccagtaagaaaattggggaccaggaggctgacagtgaggtaga 35900969



 Score =  186 bits (94), Expect = 3e-44
 Identities = 190/222 (85%), Gaps = 5/222 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1508     ccagagtccttggactcccgcttccttttttatccgctgcatcggatcaccggcgtgccc 1567
                |||||||||||||||||||||||| ||||| |||||||||||| |||||||  |||| ||
Sbjct: 96987310 ccagagtccttggactcccgcttcttttttaatccgctgcatcagatcacccacgtgtcc 96987369

                                                                            
Query: 1568     catcatgtcagacgcggccgtggacaccagctccgagatcaccaccaaggacttaaaaga 1627
                |||| ||||||| | |||| |||||| ||||||| ||||||||| |||||||||     |
Sbjct: 96987370 catcctgtcagatgtggccatggacaacagctccaagatcaccatcaaggactt-----a 96987424

                                                                            
Query: 1628     gaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccctgctaatggcaatgc 1687
                |||||||||||| |||||||| || || | ||| | | || | ||||||||| | |||||
Sbjct: 96987425 gaagaaggaagttgtggaggaagcagagagtggaagagagacacctgctaataggaatgc 96987484

                                                          
Query: 1688     taatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
                |||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 96987485 taatgaggaaaatggggagcagaaggctgacaatgacgtaga 96987526



 Score =  184 bits (93), Expect = 1e-43
 Identities = 111/117 (94%)
 Strand = Plus / Plus

                                                                            
Query: 965      attgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgtt 1024
                |||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||
Sbjct: 96988002 attgttaggggtcagccatttttaatgatctccgatgaccaaaccagacttctgagcatt 96988061

                                                                         
Query: 1025     ctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaaag 1081
                |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 96988062 ctctgtcctatttctgactttacttctggtgtgaccatgttcattataatctcaaag 96988118



 Score =  178 bits (90), Expect = 7e-42
 Identities = 200/236 (84%), Gaps = 3/236 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1497     cagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcggatca 1556
                ||||||||| |||||||||||||||||||| ||| |||| | ||| |||||||||||  |
Sbjct: 35900734 cagctttgttgccagagtccttggactcccactttctttgtaatctgctgcatcggacta 35900793

                                                                            
Query: 1557     ccggcgtgccccatcatgtcagacgcg---gccgtggacaccagctccgagatcaccacc 1613
                | ||| ||||||||||||||||| ||    |||||||  |||||||||||||||||||||
Sbjct: 35900794 ctggcctgccccatcatgtcagaagcccaagccgtgggtaccagctccgagatcaccacc 35900853

                                                                            
Query: 1614     aaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccct 1673
                ||||||||| |||||||||||||||| |||||||||||| |||| | || | |||| | |
Sbjct: 35900854 aaggacttacaagagaagaaggaagttgtggaggaggcgaaaaacgagagagaggcacat 35900913

                                                                        
Query: 1674     gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
                 || |||| ||||| | | || ||| |||||| ||||||||||||| |||||||||
Sbjct: 35900914 tctgatgggaatgccagtaagaaaattggggaccaggaggctgacagtgaggtaga 35900969



 Score =  170 bits (86), Expect = 2e-39
 Identities = 113/122 (92%)
 Strand = Plus / Plus

                                                                            
Query: 959      gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
                |||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||| |
Sbjct: 51866647 gtacatatcgttaggggtcagccatttttaatgatcccagatgaccagaccagccttcag 51866706

                                                                            
Query: 1019     agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
                ||| |||||||||||||||||||||||| |||||||||||||||  ||||||||||||||
Sbjct: 51866707 agcattctctgtcctacttctgactttatttgtggtgtgaccataatcattataatctca 51866766

                  
Query: 1079     aa 1080
                ||
Sbjct: 51866767 aa 51866768



 Score =  141 bits (71), Expect = 1e-30
 Identities = 111/126 (88%), Gaps = 10/126 (7%)
 Strand = Plus / Plus

                                                                            
Query: 959      gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
                |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 35901468 gtacctattgtgaagggtcagccatttttaatgatctcggatgaccaaaccagccttc-- 35901525

                                                                            
Query: 1019     agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
                        |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 35901526 --------ctgtcctacttctgactttacttgcgatgtgaccatgttcattataatctca 35901577

                      
Query: 1079     aaggag 1084
                ||||||
Sbjct: 35901578 aaggag 35901583



 Score =  137 bits (69), Expect = 2e-29
 Identities = 203/245 (82%), Gaps = 7/245 (2%)
 Strand = Plus / Plus

                                                                            
Query: 221      actccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcat 280
                |||| ||||||||| || |||| ||||||||||  || ||| |||||| || | ||||||
Sbjct: 51865935 actctggcagctttatcaccagcgtccttggacagccactttctttttaattcactgcat 51865994

                                                                            
Query: 281      cggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctcc-gagatca 339
                  |||||| ||  ||||||||||| ||||| | |||  | || |||||||   |||||||
Sbjct: 51865995 gagatcactggtatgccccatcatatcagatgtggc--ttgataccagcttttgagatca 51866052

                                                                            
Query: 340      ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagagg 399
                ||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||
Sbjct: 51866053 ccatcaaggacttaaaagagcagaaagaagttgtggaggaggcggagaatgggagagagg 51866112

                                                                            
Query: 400      cccctgct----aatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgag 455
                | ||||||    ||||| ||||||| |||| || || |||| |||||||||| |||||||
Sbjct: 51866113 cacctgctaatgaatgggaatgctagtgagtaagatagggatcaggaggctgccaatgag 51866172

                     
Query: 456      gtaga 460
                |||||
Sbjct: 51866173 gtaga 51866177



 Score =  133 bits (67), Expect = 4e-28
 Identities = 169/203 (83%), Gaps = 5/203 (2%)
 Strand = Plus / Plus

                                                                            
Query: 690      ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
                |||| ||||| | ||||||||||||||||| |||||||| |||||||| | |||    ||
Sbjct: 96987735 ccactgtgacttgttcaccctccacttcccatctcagaaaaatcctaaccttgggtctct 96987794

                                                                            
Query: 750      tcgagtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgt 809
                |  |||||||   ||| ||||||||| ||||||| |||||| ||||||||||||||    
Sbjct: 96987795 tttagtagagtcccgcgtgcccgcccacccaccgtgggcagtgccacccgcagatg---- 96987850

                                                                            
Query: 810      gcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaag 869
                 |||||| |||||||| |||||||||||||||||||| ||| |||||| |||||| ||||
Sbjct: 96987851 -cgctcttcaccacccaaccaaaaccacaacgtgaatatgcaacaggggaggaaaaaaag 96987909

                                       
Query: 870      aaccaaaacttccaaggccctgc 892
                 ||| |||||| |||||||||||
Sbjct: 96987910 gaccgaaactttcaaggccctgc 96987932



 Score =  123 bits (62), Expect = 3e-25
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1132     aatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataagt 1191
                ||||||||||||||| ||||| ||||       |||||||||| ||||||||||||||||
Sbjct: 35901624 aatcttattccgagcgttccagtaactttttttgtgtatgtacatagctgtactataagt 35901683

                                                           
Query: 1192     agttggtttgtatgagatggttaaaaaggccaaagataaaagg 1234
                | ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 35901684 aattggtttgtgtgagatggttaaaaaggccaaagataaaagg 35901726



 Score =  115 bits (58), Expect = 8e-23
 Identities = 67/70 (95%)
 Strand = Plus / Plus

                                                                            
Query: 1165     gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
                |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 51866853 gtgtatatacttagctgtactataagtagttggcttgtatgagatggttaaaaaggccaa 51866912

                          
Query: 1225     agataaaagg 1234
                || |||||||
Sbjct: 51866913 aggtaaaagg 51866922



 Score =  113 bits (57), Expect = 3e-22
 Identities = 200/245 (81%), Gaps = 7/245 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1490     actccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcat 1549
                |||| ||||||||| || |||| ||||||||||  || ||| |||||| || | ||||||
Sbjct: 51865935 actctggcagctttatcaccagcgtccttggacagccactttctttttaattcactgcat 51865994

                                                                            
Query: 1550     cggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctcc-gagatca 1608
                  |||||| ||  ||||||||||| ||||| | |||  | || |||||||   |||||||
Sbjct: 51865995 gagatcactggtatgccccatcatatcagatgtggc--ttgataccagcttttgagatca 51866052

                                                                            
Query: 1609     ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaagg 1668
                ||| |||||||||||||||| |||| ||||| |||||||||||||| ||||||| | |||
Sbjct: 51866053 ccatcaaggacttaaaagagcagaaagaagttgtggaggaggcggagaatgggagagagg 51866112

                                                                            
Query: 1669     cccctgct----aatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgag 1724
                | ||||||    ||||| ||||||| |||| || || |||| |||||||||| |||||||
Sbjct: 51866113 cacctgctaatgaatgggaatgctagtgagtaagatagggatcaggaggctgccaatgag 51866172

                     
Query: 1725     gtaga 1729
                |||||
Sbjct: 51866173 gtaga 51866177



 Score =  111 bits (56), Expect = 1e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                            
Query: 547      ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
                ||||||||| || ||| |||| ||  ||||||||||||||||| || ||||| |||||||
Sbjct: 51866258 ctgaggcagttataggtaaacaggtggctgaagatgatgaggatgatgatgttgacacca 51866317

                                                                    
Query: 607      agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaagctaaa 658
                |||||||||||||| |||||||| |||||| |||||||| ||||||| ||||
Sbjct: 51866318 agaagcagaagaccaatgaggataactagaaagcaaaaatggaaaagttaaa 51866369



 Score =  109 bits (55), Expect = 5e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                            
Query: 1286     ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
                ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 35901790 ggcctgtttgatgtatgtgtgaaacaatgctgtccaaaaataaactggaattttattttg 35901849

                           
Query: 1346     ctgagttgttc 1356
                || ||||||||
Sbjct: 35901850 ctcagttgttc 35901860



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                            
Query: 554      agctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacaccaagaagca 613
                ||||||||||||||||||||||||||||||||| || |||  ||| ||| ||||| ||||
Sbjct: 35901063 agctacaggcaaacgggcagctgaagatgatgaagatgacagtgttgactccaagcagca 35901122

                                                     
Query: 614      gaagaccgatgaggatgactagacagcaaaaaaggaa 650
                 || |||  |||||||||||||||| |||||||||||
Sbjct: 35901123 aaacaccagtgaggatgactagacaacaaaaaaggaa 35901159



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 165/201 (82%), Gaps = 2/201 (0%)
 Strand = Plus / Plus

                                                                            
Query: 690      ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
                |||| |||||||||| ||| ||||||||| |||||  ||||||||||||| |||||||||
Sbjct: 51866378 ccactgtgacctatttaccttccacttcctgtctccaaagaatcctaaacatggtcacct 51866437

                                                                            
Query: 750      tcgagtagagagtcgcctgcccgcccgcccaccgc-gggcagcgccacccgcagatgacg 808
                || |||||||     |||||||  | |||||| || ||||||| ||||| | ||||||  
Sbjct: 51866438 tcaagtagagtcctacctgcccaactgcccactgctgggcagcaccacctgtagatgata 51866497

                                                                            
Query: 809      tgcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaa 868
                ||  ||||||||||||| |||||||||||||| ||||||| |  ||| | ||| || |||
Sbjct: 51866498 tggactctccaccacccaaccaaaaccacaacatgaattttcggcagaggagggaaaaaa 51866557

                                     
Query: 869      gaaccaaaacttccaaggccc 889
                | ||| |||||||||||||||
Sbjct: 51866558 g-acccaaacttccaaggccc 51866577



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 1286     ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
                ||||||||| ||| |||||| ||| ||| ||||||||||||||||  |||||||||||||
Sbjct: 51866983 ggcctgttttatgcatgtgtaaaagaatattgtccaacaataaactagaattttattttg 51867042

                          
Query: 1346     ctgagttgtt 1355
                ||||||||||
Sbjct: 51867043 ctgagttgtt 51867052



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 63/70 (90%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1165     gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
                |||||||||||| |||||||||| | |||||||| |||||||||||||| ||| || |||
Sbjct: 96988225 gtgtatgtacttggctgtactattaatagttggtctgtatgagatggtt-aaacgggcaa 96988283

                          
Query: 1225     agataaaagg 1234
                ||||||||||
Sbjct: 96988284 agataaaagg 96988293



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                     
Query: 124      cactggctggtctgaaaagccatctttgcattgttcc 160
                ||||||||| |||||||||||||||||||||||||||
Sbjct: 35900656 cactggctgctctgaaaagccatctttgcattgttcc 35900692



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                                    
Query: 125      actggctggtctgaaaagccatctttgcattgttcc 160
                |||||||| |||||||||||||||||||||||||||
Sbjct: 51865842 actggctgctctgaaaagccatctttgcattgttcc 51865877



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 54/60 (90%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                            
Query: 600      gacaccaagaagcagaagaccgatgaggatgactagacagc-aaaaaaggaaaagctaaa 658
                ||||||| ||||||||||||| |||||||| | |||||||| ||||||||||||| ||||
Sbjct: 96987652 gacaccaggaagcagaagaccaatgaggatcaatagacagcaaaaaaaggaaaaggtaaa 96987711



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                   
Query: 1395     ctggctggtctgaaaagccatctttgcattgttcc 1429
                ||||||| |||||||||||||||||||||||||||
Sbjct: 35900658 ctggctgctctgaaaagccatctttgcattgttcc 35900692



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                   
Query: 1395     ctggctggtctgaaaagccatctttgcattgttcc 1429
                ||||||| |||||||||||||||||||||||||||
Sbjct: 51865843 ctggctgctctgaaaagccatctttgcattgttcc 51865877



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1287     gcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgc 1346
                |||||||| || | |||||||||||||||||||| || |||| || ||| ||||||||||
Sbjct: 96988342 gcctgtttcatatttgtgtgaaacaatgttgtcctactataagccagaactttattttgc 96988401

                   
Query: 1347     tga 1349
                |||
Sbjct: 96988402 tga 96988404


>Sscrofa_ChrX 
||          Length = 144288218

 Score =  198 bits (100), Expect = 7e-48
 Identities = 208/242 (85%), Gaps = 4/242 (1%)
 Strand = Plus / Minus

                                                                            
Query: 220      gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 279
                |||||| |||||||| | |||||| ||||||||||||| ||| | |||| |||  || ||
Sbjct: 88934174 gactccagcagctttattgccagaatccttggactcccactttcattttaatctacttca 88934115

                                                                            
Query: 280      tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 339
                | ||| ||| || | |||||||||||||||| ||||  |||||| ||||||| |||||||
Sbjct: 88934114 tgggagcactggtgcgccccatcatgtcagatgcggtagtggacgccagctctgagatca 88934055

                                                                            
Query: 340      ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagagg 399
                |||| |||||||||   |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 88934054 ccac-aaggactta---gagaagaaggaagttgtggaggaggcggagaatgggagagagg 88933999

                                                                            
Query: 400      cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 459
                | || |||||||| ||||||||| ||||| |||||||||| |||||||| |||||| |||
Sbjct: 88933998 cacccgctaatgggaatgctaataaggaatatggggagcaagaggctgataatgagatag 88933939

                  
Query: 460      at 461
                ||
Sbjct: 88933938 at 88933937



 Score =  176 bits (89), Expect = 3e-41
 Identities = 206/243 (84%), Gaps = 4/243 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1489     gactccggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgca 1548
                |||||| |||||||| | |||||| ||||||||||||| ||| | |||| |||  || ||
Sbjct: 88934174 gactccagcagctttattgccagaatccttggactcccactttcattttaatctacttca 88934115

                                                                            
Query: 1549     tcggatcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatca 1608
                | ||| ||| || | |||||||||||||||| ||||  |||||| ||||||| |||||||
Sbjct: 88934114 tgggagcactggtgcgccccatcatgtcagatgcggtagtggacgccagctctgagatca 88934055

                                                                            
Query: 1609     ccaccaaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaagg 1668
                |||| |||||||||   |||||||||||||| |||||||||||||| ||||||| | |||
Sbjct: 88934054 ccac-aaggactta---gagaagaaggaagttgtggaggaggcggagaatgggagagagg 88933999

                                                                            
Query: 1669     cccctgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtag 1728
                | || |||||||| ||||||||| ||||| |||||||||| |||||||| |||||| |||
Sbjct: 88933998 cacccgctaatgggaatgctaataaggaatatggggagcaagaggctgataatgagatag 88933939

                   
Query: 1729     atg 1731
                |||
Sbjct: 88933938 atg 88933936



 Score =  125 bits (63), Expect = 9e-26
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                             
Query: 1286      ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
                 ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct: 110362379 ggcctgtttgatgtatgtgtgaagcaatgttgtctaacaataaactggaattttattttg 110362438

                                
Query: 1346      ctgagttgttctaac 1360
                 |||||||||||||||
Sbjct: 110362439 ctgagttgttctaac 110362453



 Score =  111 bits (56), Expect = 1e-21
 Identities = 68/72 (94%)
 Strand = Plus / Minus

                                                                            
Query: 1289     ctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgctg 1348
                ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 88933122 ctgtttggtatatgtgtgaaacaatgttgtccaacaataaactggaattttattttgctg 88933063

                            
Query: 1349     agttgttctaac 1360
                |||| |||||||
Sbjct: 88933062 agttattctaac 88933051



 Score =  101 bits (51), Expect = 1e-18
 Identities = 94/107 (87%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                            
Query: 547      ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
                |||||||||||||||||||| ||||||||||| |||||||||| |||| ||| || ||||
Sbjct: 88933852 ctgaggcagctacaggcaaatgggcagctgaaaatgatgaggatgacgttgttga-acca 88933794

                                                               
Query: 607      agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaag 653
                ||||||||||||| ||| || ||||||| | | |||||||| |||||
Sbjct: 88933793 agaagcagaagactgataagaatgactacataccaaaaaagtaaaag 88933747



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 1165     gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
                ||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| ||||
Sbjct: 88933255 gtgtatgtacttagctgtactataaatagttggtctgtataagatggataaaaagaccaa 88933196

                          
Query: 1225     agataaaagg 1234
                |||| |||||
Sbjct: 88933195 agattaaagg 88933186



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 1023     ttctctgtcctacttctgactttacttgtggtgt 1056
                |||||| |||||||||||||||||||||||||||
Sbjct: 88933391 ttctctatcctacttctgactttacttgtggtgt 88933358


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  186 bits (94), Expect = 3e-44
 Identities = 118/126 (93%)
 Strand = Plus / Minus

                                                                            
Query: 959      gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
                ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||
Sbjct: 49901216 gtacatattgttaggggtcagccctttttaatgatctcggttgaccaaaccatcctttgg 49901157

                                                                            
Query: 1019     agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
                |||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||
Sbjct: 49901156 agcgttctctgtcctatttctgacctcacttgtggtgtgatcatgttcattataatctca 49901097

                      
Query: 1079     aaggag 1084
                ||||||
Sbjct: 49901096 aaggag 49901091



 Score =  143 bits (72), Expect = 4e-31
 Identities = 194/236 (82%), Gaps = 14/236 (5%)
 Strand = Plus / Minus

                                                                            
Query: 225      cggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcgga 284
                |||||||||||||||||||||||||||||||| |||||| |||   || |||| ||| ||
Sbjct: 49902181 cggcagctttgtcgccagagtccttggactcctgcttccctttcattctgctgtatcaga 49902122

                                                                            
Query: 285      tcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccacc 344
                ||||| || ||||||||||||||||| || ||||||||  || |||| ||||||||||||
Sbjct: 49902121 tcaccagcatgccccatcatgtcagaggccgccgtggatgccggctctgagatcaccacc 49902062

                                                                            
Query: 345      aaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccct 404
                |||||||       |||||||||||| ||         |||||||||||||||| | |||
Sbjct: 49902061 aaggact-----ccgaagaaggaagttgt---------ggagaatgggagagagacacct 49902016

                                                                        
Query: 405      gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
                ||||||||  ||||||||||| ||||| ||||||||||| |||||  |||||||||
Sbjct: 49902015 gctaatggggatgctaatgagaaaaatagggagcaggagactgaccctgaggtaga 49901960



 Score =  127 bits (64), Expect = 2e-26
 Identities = 192/236 (81%), Gaps = 14/236 (5%)
 Strand = Plus / Minus

                                                                            
Query: 1494     cggcagctttgtcgccagagtccttggactcccgcttccttttttatccgctgcatcgga 1553
                |||||||||||||||||||||||||||||||| |||||| |||   || |||| ||| ||
Sbjct: 49902181 cggcagctttgtcgccagagtccttggactcctgcttccctttcattctgctgtatcaga 49902122

                                                                            
Query: 1554     tcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccacc 1613
                ||||| || ||||||||||||||||| || ||||||||  || |||| ||||||||||||
Sbjct: 49902121 tcaccagcatgccccatcatgtcagaggccgccgtggatgccggctctgagatcaccacc 49902062

                                                                            
Query: 1614     aaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccct 1673
                |||||||       |||||||||||| ||||||         ||||||| | || | |||
Sbjct: 49902061 aaggact-----ccgaagaaggaagttgtggag---------aatgggagagagacacct 49902016

                                                                        
Query: 1674     gctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
                ||||||||  ||||||||||| ||||| ||||||||||| |||||  |||||||||
Sbjct: 49902015 gctaatggggatgctaatgagaaaaatagggagcaggagactgaccctgaggtaga 49901960



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                            
Query: 559      caggcaaacgggcagctgaagatgatgaggacgacgatgtggacaccaagaagcagaaga 618
                |||||||| | |||||||||||||||||| | || ||| | |||||||||||||||||||
Sbjct: 49901867 caggcaaaggagcagctgaagatgatgagcatgatgatattgacaccaagaagcagaaga 49901808

                                            
Query: 619      ccgatgaggatgactagacagcaaaaaa 646
                | |||||||| |||| ||||||||||||
Sbjct: 49901807 ctgatgaggaggactggacagcaaaaaa 49901780



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 166/203 (81%), Gaps = 7/203 (3%)
 Strand = Plus / Minus

                                                                            
Query: 690      ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
                ||||| |||||||||||  |||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 49901478 ccaccatgacctattcattctccacttcctgtctcagaagaatcctaaatgtggtcacct 49901419

                                                                            
Query: 750      tcgagtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgacgt 809
                |   | ||||   || ||| ||| || |||||  ||||  | |||||   |||||||| |
Sbjct: 49901418 t---ggagagtcccgactgtccgtccacccacttcgggatgtgccac---cagatgacat 49901365

                                                                            
Query: 810      gcgctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaag 869
                ||   |||||||||||  |||||||||||| |||||||| | |||||  |||||| ||||
Sbjct: 49901364 gcctgctccaccacccagccaaaaccacaaggtgaatttacaacaggagaggaaaaaaag 49901305

                                       
Query: 870      aaccaaaacttccaaggccctgc 892
                |||| ||||||||||||||||||
Sbjct: 49901304 aacc-aaacttccaaggccctgc 49901283



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 65/70 (92%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1165     gtgtatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaa 1224
                ||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |||||||
Sbjct: 16910640 gtgtatgtacttagctgtactataagtagttagttt-tatgaaatgattaaagaggccaa 16910698

                          
Query: 1225     agataaaagg 1234
                ||||||||||
Sbjct: 16910699 agataaaagg 16910708



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 99/116 (85%), Gaps = 1/116 (0%)
 Strand = Plus / Plus

                                                                            
Query: 964      tattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgt 1023
                |||| ||||||||||||| |||||| || |||  |||||||| || | |||| || | ||
Sbjct: 16910439 tattcttaggggtcagccttttttagtggtcttagatgaccagactatcctttggggtgt 16910498

                                                                        
Query: 1024     tctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaa 1079
                ||||| |||||||| ||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 16910499 tctctttcctactt-tgactttacttattgtgtgatcatgttcattataatctcaa 16910553



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                            
Query: 1168     tatgtacttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaaaga 1227
                |||||| || ||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 49900986 tatgtatttggctatactataaatagttggtttgtatgagatggtttaaaaggccaaaga 49900927

                  
Query: 1228     ta 1229
                ||
Sbjct: 49900926 ta 49900925



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 67/75 (89%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                            
Query: 1286     ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
                |||||||||||||||||||||||  | |||||| ||||  |||||| |||||||| ||||
Sbjct: 49900591 ggcctgtttgatgtatgtgtgaa--agtgttgtgcaacggtaaaccagaatttta-tttg 49900535

                               
Query: 1346     ctgagttgttctaac 1360
                |||||||||||||||
Sbjct: 49900534 ctgagttgttctaac 49900520



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 568      gggcagctgaagatgatgaggacgacgatgtggacacc-aagaagcagaagaccgatgag 626
                |||||||||||| |||  |||  || ||||| |||||| |||||  ||||||||||||||
Sbjct: 16909502 gggcagctgaaggtgacaagggtgatgatgttgacaccgaagaacaagaagaccgatgag 16909561

                                          
Query: 627      gatgactagacagcaaaaaaggaaaa 652
                |||||||| ||| |||||||| ||||
Sbjct: 16909562 gatgactacacaacaaaaaagaaaaa 16909587


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  143 bits (72), Expect = 4e-31
 Identities = 105/116 (90%)
 Strand = Plus / Plus

                                                                            
Query: 969      ttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctct 1028
                |||||||||||||||||||||||||||| | |||||| | |||  || ||||| ||||||
Sbjct: 78605067 ttaggggtcagccatttttaatgatctcaggtgaccagatcagattttggagcattctct 78605126

                                                                        
Query: 1029     gtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaaaggag 1084
                || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 78605127 gtactacttctgactttacttgtggtgtgatcatgttccttataatctcaaaggag 78605182



 Score =  119 bits (60), Expect = 5e-24
 Identities = 100/112 (89%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                            
Query: 548      tgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacaccaa 607
                ||||||||||||||| ||| |||||||||||||||||||||| ||   ||| || |||||
Sbjct: 78604663 tgaggcagctacaggtaaatgggcagctgaagatgatgaggatgattgtgttgaaaccaa 78604722

                                                                    
Query: 608      gaagcagaagaccgatgaggatgactagacag-caaaaaaggaaaagctaaa 658
                |||||||||||| |||||||||||||||||||  ||||||||||||| ||||
Sbjct: 78604723 gaagcagaagactgatgaggatgactagacagttaaaaaaggaaaagttaaa 78604774



 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 135/163 (82%), Gaps = 2/163 (1%)
 Strand = Plus / Plus

                                                                            
Query: 690      ccaccgtgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacct 749
                ||||| |||||||||||||||   |||||| ||||||||||||||||||| |||| ||||
Sbjct: 78604789 ccaccttgacctattcaccctgtgcttcccttctcagaagaatcctaaacatggttacct 78604848

                                                                            
Query: 750      tcgagtagagag--tcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgac 807
                || || ||||||  ||| ||||| ||| |||  | | |||| || | ||| |||||||||
Sbjct: 78604849 tctaggagagagcctcgactgcctgcctgccagctgggggctgccctaccagcagatgac 78604908

                                                           
Query: 808      gtgcgctctccaccaccccaccaaaaccacaacgtgaatttgc 850
                 ||  ||||||||||| | |||||||||||||| |||||||||
Sbjct: 78604909 atgatctctccaccacacaaccaaaaccacaacatgaatttgc 78604951



 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                            
Query: 1286     ggcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttg 1345
                |||||||||||||| |||||||||||||||||||||| || ||| | || |||| |||||
Sbjct: 78605368 ggcctgtttgatgtgtgtgtgaaacaatgttgtccaataaaaaaacagagttttgttttg 78605427

                               
Query: 1346     ctgagttgttctaac 1360
                ||| |||||||||||
Sbjct: 78605428 ctgtgttgttctaac 78605442



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 383      ggagaatgggagagaggcccctgctaatggcaatgctaatgaggaaaatggggagcagga 442
                ||||||||| || | ||| ||||||||||| || ||||||||| ||| | |||||| |||
Sbjct: 78604504 ggagaatggaagtggggcacctgctaatgggaaagctaatgagaaaattagggagctgga 78604563

                              
Query: 443      ggctgacaatgagg 456
                 |||||||||||||
Sbjct: 78604564 tgctgacaatgagg 78604577


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  127 bits (64), Expect = 2e-26
 Identities = 100/112 (89%)
 Strand = Plus / Minus

                                                                             
Query: 547       ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
                 ||||||||||||||||||||  |||||||||  |||||||||| |||||||| |||| ||
Sbjct: 313112869 ctgaggcagctacaggcaaataggcagctgacaatgatgaggatgacgatgttgacagca 313112810

                                                                     
Query: 607       agaagcagaagaccgatgaggatgactagacagcaaaaaaggaaaagctaaa 658
                 ||||||  |||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct: 313112809 agaagctaaagacctatgaggatgactagagagcaaaaaaggaaaagttaaa 313112758



 Score =  117 bits (59), Expect = 2e-23
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                             
Query: 969       ttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcggagcgttctct 1028
                 ||||||||||| ||||||||||| | ||  |||||||| ||||  ||| |||| ||||||
Sbjct: 313112463 ttaggggtcagacatttttaatggtttcatatgaccaagccagatttcagagcattctct 313112404

                                                                        
Query: 1029      gtcctacttctgactttacttgtggtgtgaccatgttcattataatctcaaagga 1083
                 |||||||||||||||||||||||| ||||| |||| |||||||| ||||||||||
Sbjct: 313112403 gtcctacttctgactttacttgtgatgtgatcatggtcattatattctcaaagga 313112349



 Score =  115 bits (58), Expect = 8e-23
 Identities = 168/200 (84%), Gaps = 6/200 (3%)
 Strand = Plus / Minus

                                                                             
Query: 696       tgacctattcaccctccacttcccgtctcagaagaatcctaaacgtggtcacctt--cga 753
                 |||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||   ||
Sbjct: 313112738 tgacctattcacactccacctcccttctcagaagaatcctaaacatggtcacctttggga 313112679

                                                                             
Query: 754       gtagagagtcgcctgcccgcccgcccaccgcgggcagcgccacccgcagatgac--gtgc 811
                 |||||||||| ||| || ||| ||| || | |||| | ||||||| ||||||||  | ||
Sbjct: 313112678 gtagagagtc-cct-cctgcctgccgacagtgggctgtgccacccacagatgacaagcgc 313112621

                                                                             
Query: 812       gctctccaccaccccaccaaaaccacaacgtgaatttgccacagggaaggaaagaaagaa 871
                  ||||||||||||| |||||||||||||| |  |||||| |||||| |||||| || | |
Sbjct: 313112620 tctctccaccacccaaccaaaaccacaacatctatttgcaacaggggaggaaaaaatgta 313112561

                                     
Query: 872       ccaaaacttccaaggccctg 891
                 |  |||||||||||||||||
Sbjct: 313112560 ctcaaacttccaaggccctg 313112541



 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                             
Query: 1287      gcctgtttgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgc 1346
                 |||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||||
Sbjct: 313112143 gcctgtttgatgtatgtgtgaaacaatgttgtccaataataaactggagtttgattttgc 313112084

                               
Query: 1347      tgagttgttctaac 1360
                   ||||||||||||
Sbjct: 313112083 caagttgttctaac 313112070



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 58/62 (93%)
 Strand = Plus / Minus

                                                                             
Query: 1173      acttagctgtactataagtagttggtttgtatgagatggttaaaaaggccaaagataaaa 1232
                 |||||||  |||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 312561749 acttagccatactataagtagttggtttgtatgagatggttaaaaaggataaagataaaa 312561690

                   
Query: 1233      gg 1234
                 ||
Sbjct: 312561689 gg 312561688



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 145/177 (81%), Gaps = 6/177 (3%)
 Strand = Plus / Minus

                                                                             
Query: 1553      atcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccac 1612
                 ||||| || |||||||||||||||||| | ||  ||||| |||||||| |||||||||||
Sbjct: 313113119 atcactggtgtgccccatcatgtcagatgtgggtgtggaaaccagctctgagatcaccac 313113060

                                                                             
Query: 1613      caaggacttaaaagagaagaaggaagtcgtggaggaggcggaaaatgggaaaaaggcccc 1672
                  ||||||||||||||     |||||||  ||||||||| ||| ||||| |  |||||  |
Sbjct: 313113059 aaaggacttaaaaga-----aggaagttatggaggaggtggagaatgg-atcaaggcatc 313113006

                                                                          
Query: 1673      tgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 1729
                 ||||| ||| || ||||||||| ||| |  ||||  |||||||||||||||||||||
Sbjct: 313113005 tgctattgggaaagctaatgagaaaattatggagttggaggctgacaatgaggtaga 313112949



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 145/177 (81%), Gaps = 6/177 (3%)
 Strand = Plus / Minus

                                                                             
Query: 284       atcaccggcgtgccccatcatgtcagacgcggccgtggacaccagctccgagatcaccac 343
                 ||||| || |||||||||||||||||| | ||  ||||| |||||||| |||||||||||
Sbjct: 313113119 atcactggtgtgccccatcatgtcagatgtgggtgtggaaaccagctctgagatcaccac 313113060

                                                                             
Query: 344       caaggacttaaaagagaagaaggaagtcgtggaggaggcggagaatgggagagaggcccc 403
                  ||||||||||||||     |||||||  ||||||||| |||||||||   | ||||  |
Sbjct: 313113059 aaaggacttaaaaga-----aggaagttatggaggaggtggagaatggatca-aggcatc 313113006

                                                                          
Query: 404       tgctaatggcaatgctaatgaggaaaatggggagcaggaggctgacaatgaggtaga 460
                 ||||| ||| || ||||||||| ||| |  ||||  |||||||||||||||||||||
Sbjct: 313113005 tgctattgggaaagctaatgagaaaattatggagttggaggctgacaatgaggtaga 313112949



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 84/103 (81%)
 Strand = Plus / Minus

                                                                             
Query: 1131      caatcttattccgagcattccaataacnnnnnnngtgtatgtacttagctgtactataag 1190
                 |||||||||||| |||||| || ||||       ||||||||| |||||| |||| ||||
Sbjct: 313112300 caatcttattccaagcatttcagtaacttttcttgtgtatgtatttagctatactgtaag 313112241

                                                            
Query: 1191      tagttggtttgtatgagatggttaaaaaggccaaagataaaag 1233
                 | |||||||  | ||||||||||||||| ||||||||| ||||
Sbjct: 313112240 ttgttggttcatgtgagatggttaaaaaagccaaagatgaaag 313112198


>Sscrofa_Chr04 
||          Length = 143465943

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 108/126 (85%), Gaps = 1/126 (0%)
 Strand = Plus / Minus

                                                                            
Query: 959      gtacatattgttaggggtcagccatttttaatgatctcggatgaccaaaccagccttcgg 1018
                ||||||||||||| ||||||||||||| |||| |||| || |||  |||| |  |||| |
Sbjct: 88902743 gtacatattgttacgggtcagccatttctaataatctagg-tgatgaaacaaatcttcag 88902685

                                                                            
Query: 1019     agcgttctctgtcctacttctgactttacttgtggtgtgaccatgttcattataatctca 1078
                || ||| |||| ||||||||||||||| ||| || |||||||||||||||||| ||||||
Sbjct: 88902684 agtgttttctgccctacttctgactttgcttatgatgtgaccatgttcattattatctca 88902625

                      
Query: 1079     aaggag 1084
                ||||||
Sbjct: 88902624 aaggag 88902619



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 1294     tgatgtatgtgtgaaacaatgttgtccaacaataaaccggaattttattttgctgagt 1351
                |||||||||||||||||| || ||||||||||||||  || |||||||||||||||||
Sbjct: 88902433 tgatgtatgtgtgaaacactgctgtccaacaataaattggcattttattttgctgagt 88902376



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 69/80 (86%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                            
Query: 547      ctgaggcagctacaggcaaacgggcagctgaagatgatgaggacgacgatgtggacacca 606
                |||||||||||||||||||| |||||| |||| |||||||||| || | ||  ||||| |
Sbjct: 88904698 ctgaggcagctacaggcaaatgggcaggtgaaaatgatgaggatgatgctgctgacacta 88904639

                                    
Query: 607      agaagcagaagaccgatgag 626
                || |||||||||| ||||||
Sbjct: 88904638 ag-agcagaagactgatgag 88904620


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,665,122
Number of extensions: 440
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 91
Length of query: 1758
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1736
Effective length of database: 2,808,408,574
Effective search space: 4875397284464
Effective search space used: 4875397284464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)