Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000404
(1182 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taur... 755 0.0
Alignment gi|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 2... 744 0.0
Alignment gi|NP_001014855.1| 26S protease regulatory subunit 4 [Bos tauru... 317 1e-86
Alignment gi|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taur... 295 4e-80
Alignment gi|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus]. 286 3e-77
Alignment gi|NP_001015639.1| 26S protease regulatory subunit 7 [Bos tauru... 267 1e-71
Alignment gi|NP_001039705.1| 26S protease regulatory subunit 10B [Bos tau... 247 2e-65
Alignment gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B... 179 4e-45
Alignment gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like... 177 2e-44
Alignment gi|NP_001039676.1| AFG3-like protein 2 [Bos taurus]. 169 3e-42
>ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus].
Length = 440
Score = 755 bits (1949), Expect = 0.0
Identities = 385/394 (97%), Positives = 387/394 (98%)
Frame = +1
Query: 1 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 9 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQ 68
Query: 181 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 69 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 128
Query: 361 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 129 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 188
Query: 541 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 189 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 248
Query: 721 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 249 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 308
Query: 901 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 309 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 368
Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
IHSRKMNVSPDVNYEELARCTD+ A CK VCV
Sbjct: 369 IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 402
>ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3
[Bos taurus].
Length = 456
Score = 744 bits (1922), Expect = 0.0
Identities = 385/410 (93%), Positives = 387/410 (94%), Gaps = 16/410 (3%)
Frame = +1
Query: 1 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 9 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQ 68
Query: 181 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 69 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 128
Query: 361 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 129 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 188
Query: 541 IGGLDKQIQE----------------LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGT 672
IGGLDKQIQE LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGT
Sbjct: 189 IGGLDKQIQEVREARHLTSLLCLSASLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGT 248
Query: 673 GKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI 852
GKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI
Sbjct: 249 GKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI 308
Query: 853 GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPK 1032
GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD K
Sbjct: 309 GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRK 368
Query: 1033 IEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
IEFPMPNEEAR RIMQIHSRKMNVSPDVNYEELARCTD+ A CK VCV
Sbjct: 369 IEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 418
>ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus].
Length = 440
Score = 317 bits (812), Expect = 1e-86
Identities = 156/347 (44%), Positives = 230/347 (66%)
Frame = +1
Query: 139 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
+M+ E +R +++ +++K +E K+ + P V + E++D +
Sbjct: 73 LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
A++ TS +++ ++ VD + L+PG V +N + ++ L + D V
Sbjct: 121 --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173 VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
KR+DS G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP+P+E+ + RI QIH+ +M ++ DV ++L D+L A K +C
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399
>ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus].
Length = 418
Score = 295 bits (756), Expect = 4e-80
Identities = 148/362 (40%), Positives = 225/362 (62%)
Frame = +1
Query: 94 EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
E++ R + L E++ ++ + + E + +K + E++K +++P ++ +E +D
Sbjct: 38 EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97
Query: 274 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
+ A++ ++T Y++ ++ +D E LKP V ++K S
Sbjct: 98 QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137
Query: 454 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
+++ LP E DS + + D++P Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI
Sbjct: 138 ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197
Query: 634 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
PP+GVLMYGPPG GKT+LA+A A T A F+++ G + VQ ++G+G ++VRD F LAKE
Sbjct: 198 PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257
Query: 814 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
AP+IIFIDE+DAI TKRFD++ DREVQR +LELLNQ+DGF N VKVI ATNR D L
Sbjct: 258 APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317
Query: 994 DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
DPALLR GRLD KIEFP+P+ + I + KMN+S +V+ E+ D++ A
Sbjct: 318 DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377
Query: 1174 VC 1179
+C
Sbjct: 378 IC 379
>ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].
Length = 406
Score = 286 bits (731), Expect = 3e-77
Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
Frame = +1
Query: 142 MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
++ L ELQ + + +N +++ + ++ + LL + +E G+ + ++
Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
K ++K + + V +D + P V + DSY + + LP + D V
Sbjct: 77 VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M V++ P Y IGGLDKQI+E+ E I LP+ H E FE LGI PKGVL+YGPPGTGK
Sbjct: 137 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLARA A T TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197 TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
R + GD EVQRTMLELLNQLDGF+ +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP PNEEAR I++IHSRKMN++ +N ++A A K VC
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363
>ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus].
Length = 433
Score = 267 bits (683), Expect = 1e-71
Identities = 132/256 (51%), Positives = 178/256 (69%)
Frame = +1
Query: 412 LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
++ G VGV+++ Y I LP + D V M+V+E+P YSD+GG +QI++L E +
Sbjct: 134 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193
Query: 592 PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194 PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253
Query: 772 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
A++VR+ F +A+ K +IF DE+DAIG RFD GD EVQRTMLEL+NQLDGF P
Sbjct: 254 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
Query: 952 QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
+KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R I +IH+R M+V D+ +E L
Sbjct: 314 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373
Query: 1132 ARCTDELQRAPCKVVC 1179
AR A + VC
Sbjct: 374 ARLCPNSTGAEIRSVC 389
>ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus].
Length = 389
Score = 247 bits (630), Expect = 2e-65
Identities = 127/278 (45%), Positives = 178/278 (64%)
Frame = +1
Query: 346 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
++K + Y + +D KLKPG V ++ + I+ LP E D V M ++
Sbjct: 70 IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 129
Query: 526 EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 706 QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
Q FLK+ +V +IG+ A+L+R+ F A++ P IIF+DE+DAIG +RF +
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 886 DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
DRE+QRT++ELLNQ+DGF +VK+I ATNR D LDPALLR GRLD KI +PNE+AR
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
I++IH+ + +++YE + + +D A VC
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVC 347
>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
Length = 806
Score = 179 bits (454), Expect = 4e-45
Identities = 93/224 (41%), Positives = 136/224 (60%)
Frame = +1
Query: 508 VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
V E P + DIGGL+ +EL E + P+ H +KF G+ P KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 688 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
A+A A + +A F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 868 DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
+ G R + ++L ++DG V +I ATNR DI+DPA+LR GRLD I P+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
P+E++R I++ + RK V+ DV+ E LA+ T+ A +C
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 179 bits (453), Expect = 6e-45
Identities = 114/346 (32%), Positives = 186/346 (53%), Gaps = 21/346 (6%)
Frame = +1
Query: 205 NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
+ EKI++N+ + L ++ +++ + P + G I +D +G + +
Sbjct: 78 SDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137
Query: 373 YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
YFL ++ GD+ G+ + ++ET P+ Y +K
Sbjct: 138 YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 505 EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
+ +E E Y DIGG KQ+ ++ E + LP+ H F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 682 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
L+ARA A +T A F + GP+++ G+ +R AF A++ AP+IIFIDELDAI K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 862 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
R EK +R + +LL +DG + V V+AATNR + +DPAL R GR D +++
Sbjct: 313 R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
+P+ R I+QIH++ M ++ DV+ E++A T A +C
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415
>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
Length = 1004
Score = 177 bits (448), Expect = 2e-44
Identities = 93/231 (40%), Positives = 139/231 (60%)
Frame = +1
Query: 487 SRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPP 666
S ++ + VD P +SDIGGL+ +L +A+ P+ H E F +GIQPPKGVL+YGPP
Sbjct: 723 SAMREVAVDV-PNVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPP 781
Query: 667 GTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELD 846
G KT++A+A A ++ FL + GP+L+ ++G+ + VR+ F A+ APSIIF DELD
Sbjct: 782 GCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELD 841
Query: 847 AIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD 1026
A+ +R S AG+ R + +LL ++DG + V ++AATNR D +D AL+R GR+D
Sbjct: 842 ALAVERGSSSGAGN-VADRVLAQLLTEMDGIEQLKNVTILAATNRPDRIDKALMRPGRID 900
Query: 1027 PKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
I P+P+ R I+ + M ++ +V+ EL TD A VC
Sbjct: 901 RIIYVPLPDAATRREILNLQFHSMPINNEVDLNELILQTDTYSGAEIIAVC 951
Score = 151 bits (381), Expect = 1e-36
Identities = 95/266 (35%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
Frame = +1
Query: 397 VDAEKLKPGDLVGV--NKDSYLIL--ETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQI 564
V+ E+L VG N D++ + +T + +R + + + Y IGGL+ Q+
Sbjct: 414 VNEERLLKSPSVGAQSNTDTFYFISSKTRVSFTKNRTNSKDQANQLKVTYDMIGGLNSQL 473
Query: 565 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 744
+E+ E I LP+ E F++ GI PP+GVL+YGPPGTGKT++ARA A + A + GP+
Sbjct: 474 KEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPE 533
Query: 745 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 924
++ F G+ +R FA A + PSIIFIDELDA+ KR ++ ++ V ++L L++
Sbjct: 534 IISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMD 593
Query: 925 QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKM-N 1101
+ QV V+ ATNR LD AL R GR D +IE +PN + R I+Q R++ +
Sbjct: 594 GIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPH 653
Query: 1102 VSPDVNYEELARCTDELQRAPCKVVC 1179
+ + +LA A K +C
Sbjct: 654 LLTEAELLQLANSAHGYVGADLKALC 679
>ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus].
Length = 805
Score = 169 bits (429), Expect = 3e-42
Identities = 88/220 (40%), Positives = 137/220 (62%)
Frame = +1
Query: 478 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 657
E ++V E+D + + D+ G ++ E++E + N K+ +++LG + PKG ++
Sbjct: 294 ETTAKVLKDEIDVK----FKDVAGCEEAKLEIMEFVNFLKNPKQ-YQDLGAKIPKGAILT 348
Query: 658 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 837
GPPGTGKTLLA+A A + F+ ++G + ++MF+G G VRD FALA++ AP I+FID
Sbjct: 349 GPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFID 408
Query: 838 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSG 1017
E+DA+G KR G E + T+ +LL ++DGF T V ++A TNR DILDPAL+R G
Sbjct: 409 EIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPG 468
Query: 1018 RLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELAR 1137
R D +I P+ + R I ++H R + + + E+LAR
Sbjct: 469 RFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLAR 508
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,112,238
Number of extensions: 1454071
Number of successful extensions: 6744
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 6658
Number of HSP's successfully gapped: 55
Length of query: 394
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 290
Effective length of database: 14,240,222
Effective search space: 4129664380
Effective search space used: 4129664380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000404
(1182 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533187.2| PREDICTED: similar to 26S protease regulatory s... 683 0.0
Alignment gi|XP_849002.1| PREDICTED: similar to 26S protease regulatory s... 681 0.0
Alignment gi|XP_860742.1| PREDICTED: similar to 26S protease regulatory s... 640 0.0
Alignment gi|XP_860675.1| PREDICTED: similar to 26S protease regulatory s... 389 e-110
Alignment gi|XP_848524.1| PREDICTED: similar to peptidase (prosome, macro... 300 1e-81
Alignment gi|XP_533670.1| PREDICTED: similar to 26S protease regulatory s... 295 4e-80
Alignment gi|XP_867041.1| PREDICTED: similar to 26S protease regulatory s... 290 2e-78
Alignment gi|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase sub... 288 7e-78
Alignment gi|XP_867031.1| PREDICTED: similar to 26S protease regulatory s... 286 3e-77
Alignment gi|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (S... 286 3e-77
>ref|XP_533187.2| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
protein 1) (TBP-1) (Proteasome subunit P50) isoform 1
[Canis familiaris].
Length = 402
Score = 683 bits (1763), Expect = 0.0
Identities = 355/385 (92%), Positives = 357/385 (92%)
Frame = +1
Query: 28 MATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 207
MATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN
Sbjct: 1 MATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 60
Query: 208 SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV 387
SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV
Sbjct: 61 SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV 120
Query: 388 IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ 567
IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME
Sbjct: 121 IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME-------------------- 160
Query: 568 ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 747
LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL
Sbjct: 161 -LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 219
Query: 748 VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 927
VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ
Sbjct: 220 VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 279
Query: 928 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVS 1107
LDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQIHSRKMNVS
Sbjct: 280 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVS 339
Query: 1108 PDVNYEELARCTDELQRAPCKVVCV 1182
PDVNYEELARCTD+ A CK VCV
Sbjct: 340 PDVNYEELARCTDDFNGAQCKAVCV 364
>ref|XP_849002.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
TAT-binding protein homolog SATA) [Canis familiaris].
Length = 403
Score = 681 bits (1758), Expect = 0.0
Identities = 354/385 (91%), Positives = 356/385 (92%)
Frame = +1
Query: 28 MATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 207
MATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN
Sbjct: 1 MATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 60
Query: 208 SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV 387
SEKIKVNKTLPYLVSNVIELLD GKCAVIKTSTRQTYFLPV
Sbjct: 61 SEKIKVNKTLPYLVSNVIELLD--------------------GKCAVIKTSTRQTYFLPV 100
Query: 388 IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ 567
IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ
Sbjct: 101 IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ 160
Query: 568 ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 747
ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL
Sbjct: 161 ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 220
Query: 748 VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 927
VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDA GTKRFDSEKAGDREVQRTMLELLNQ
Sbjct: 221 VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQ 280
Query: 928 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVS 1107
LDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQIHSRKMNVS
Sbjct: 281 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVS 340
Query: 1108 PDVNYEELARCTDELQRAPCKVVCV 1182
PDVNYEELARC D+ A CK VCV
Sbjct: 341 PDVNYEELARCMDDFNGAQCKAVCV 365
>ref|XP_860742.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
TAT-binding protein homolog SATA) isoform 3 [Canis
familiaris].
Length = 371
Score = 640 bits (1651), Expect = 0.0
Identities = 325/333 (97%), Positives = 326/333 (97%)
Frame = +1
Query: 184 MKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTST 363
MKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTST
Sbjct: 1 MKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTST 60
Query: 364 RQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDI 543
RQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDI
Sbjct: 61 RQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDI 120
Query: 544 GGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATF 723
GGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATF
Sbjct: 121 GGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATF 180
Query: 724 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQR 903
LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQR
Sbjct: 181 LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQR 240
Query: 904 TMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQI 1083
TMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQI
Sbjct: 241 TMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQI 300
Query: 1084 HSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
HSRKMNVSPDVNYEELARCTD+ A CK VCV
Sbjct: 301 HSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 333
>ref|XP_860675.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
protein 1) (TBP-1) (Proteasome subunit P50) isoform 2
[Canis familiaris].
Length = 267
Score = 389 bits (998), Expect(2) = e-110
Identities = 196/205 (95%), Positives = 198/205 (96%)
Frame = +1
Query: 568 ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 747
+LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL
Sbjct: 25 QLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 84
Query: 748 VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 927
VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ
Sbjct: 85 VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 144
Query: 928 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVS 1107
LDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQIHSRKMNVS
Sbjct: 145 LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVS 204
Query: 1108 PDVNYEELARCTDELQRAPCKVVCV 1182
PDVNYEELARCTD+ A CK VCV
Sbjct: 205 PDVNYEELARCTDDFNGAQCKAVCV 229
Score = 28.1 bits (61), Expect(2) = e-110
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Frame = +2
Query: 524 QSNTVTSGAWTSRFR---SW 574
++N VTSGAW SRFR SW
Sbjct: 5 RNNIVTSGAWISRFRRTSSW 24
>ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
ATPase 1 isoform 2 [Canis familiaris].
Length = 440
Score = 300 bits (769), Expect = 1e-81
Identities = 150/347 (43%), Positives = 224/347 (64%)
Frame = +1
Query: 139 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
+M+ E +R +++ +K+K +E + + P V + E++D +
Sbjct: 73 LMEEEFIRNQEQMKPLKEKQEEERSTVDDLRGTPMSVGTLEEIIDDNH------------ 120
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
A++ TS +++ ++ VD + L+ G V +N + ++ L + D V
Sbjct: 121 --------AIVSTSVGSEHYVSILSFVDKDLLELGCSVLLNHKVHAVIGVLMDDTDPLVI 172
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M+V++ P E Y+DI LD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173 VMKVEKTPQETYADIRALDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLA+A A QT ATFL++ G QL+Q ++G+G KL+R+ F + +E APSI+FIDE+DAIGT
Sbjct: 233 TLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRELFRVVEEHAPSIVFIDEIDAIGT 292
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
KR+DS G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP+P+E+ + RI QIH+ +M ++ V ++L D+L A K +C
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAIC 399
>ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 1 [Canis familiaris].
Length = 418
Score = 295 bits (756), Expect = 4e-80
Identities = 148/362 (40%), Positives = 225/362 (62%)
Frame = +1
Query: 94 EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
E++ R + L E++ ++ + + E + +K + E++K +++P ++ +E +D
Sbjct: 38 EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97
Query: 274 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
+ A++ ++T Y++ ++ +D E LKP V ++K S
Sbjct: 98 QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137
Query: 454 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
+++ LP E DS + + D++P Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI
Sbjct: 138 ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197
Query: 634 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
PP+GVLMYGPPG GKT+LA+A A T A F+++ G + VQ ++G+G ++VRD F LAKE
Sbjct: 198 PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257
Query: 814 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
AP+IIFIDE+DAI TKRFD++ DREVQR +LELLNQ+DGF N VKVI ATNR D L
Sbjct: 258 APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317
Query: 994 DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
DPALLR GRLD KIEFP+P+ + I + KMN+S +V+ E+ D++ A
Sbjct: 318 DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377
Query: 1174 VC 1179
+C
Sbjct: 378 IC 379
>ref|XP_867041.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 4 [Canis familiaris].
Length = 419
Score = 290 bits (741), Expect = 2e-78
Identities = 147/363 (40%), Positives = 225/363 (61%), Gaps = 1/363 (0%)
Frame = +1
Query: 94 EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
E++ R + L E++ ++ + + E + +K + E++K +++P ++ +E +D
Sbjct: 38 EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97
Query: 274 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
+ A++ ++T Y++ ++ +D E LKP V ++K S
Sbjct: 98 QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137
Query: 454 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
+++ LP E DS + + D++P Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI
Sbjct: 138 ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197
Query: 634 PPKGVLMYGPPGTGKTLLARACAAQTK-ATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 810
PP+GVLMYGPPG GKT+LA+A A T + F+++ G + VQ ++G+G ++VRD F LAKE
Sbjct: 198 PPRGVLMYGPPGCGKTMLAKAVAHHTTDSAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 257
Query: 811 KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDI 990
AP+IIFIDE+DAI TKRFD++ DREVQR +LELLNQ+DGF N VKVI ATNR D
Sbjct: 258 NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADT 317
Query: 991 LDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCK 1170
LDPALLR GRLD KIEFP+P+ + I + KMN+S +V+ E+ D++ A
Sbjct: 318 LDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADIN 377
Query: 1171 VVC 1179
+C
Sbjct: 378 SIC 380
>ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2
isoform 2 [Canis familiaris].
Length = 387
Score = 288 bits (737), Expect = 7e-78
Identities = 144/336 (42%), Positives = 212/336 (63%)
Frame = +1
Query: 172 ELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVI 351
E + ++D E++K +++P ++ +E +D + A++
Sbjct: 33 EPEDLEDLYSRYKEEVKRIQSIPLVIGQFLEAVDQNT--------------------AIV 72
Query: 352 KTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQ 531
++T Y++ ++ +D E LKP V ++K S +++ LP E DS + + D++P
Sbjct: 73 GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 132
Query: 532 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 711
Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A T
Sbjct: 133 YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 192
Query: 712 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 891
A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++ DR
Sbjct: 193 TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 252
Query: 892 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGR 1071
EVQR +LELLNQ+DGF N VKVI ATNR D LDPALLR GRLD KIEFP+P+ +
Sbjct: 253 EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 312
Query: 1072 IMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
I + KMN+S +V+ E+ D++ A +C
Sbjct: 313 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSIC 348
>ref|XP_867031.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
(MB67 interacting protein) (TAT-binding protein-7)
(TBP-7) isoform 3 [Canis familiaris].
Length = 433
Score = 286 bits (732), Expect = 3e-77
Identities = 149/377 (39%), Positives = 225/377 (59%), Gaps = 15/377 (3%)
Frame = +1
Query: 94 EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
E++ R + L E++ ++ + + E + +K + E++K +++P ++ +E +D
Sbjct: 38 EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97
Query: 274 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
+ A++ ++T Y++ ++ +D E LKP V ++K S
Sbjct: 98 QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137
Query: 454 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENL--- 624
+++ LP E DS + + D++P Y+DIGG+D Q QE+ EA+ LP+ H E ++ L
Sbjct: 138 ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQLVKG 197
Query: 625 ------------GIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 768
GI PP+GVLMYGPPG GKT+LA+A A T A F+++ G + VQ ++G+
Sbjct: 198 LPALSFTSAFQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 257
Query: 769 GAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN 948
G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++ DREVQR +LELLNQ+DGF N
Sbjct: 258 GPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQN 317
Query: 949 TQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEE 1128
VKVI ATNR D LDPALLR GRLD KIEFP+P+ + I + KMN+S +V+ E+
Sbjct: 318 VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLED 377
Query: 1129 LARCTDELQRAPCKVVC 1179
D++ A +C
Sbjct: 378 YVARPDKISGADINSIC 394
>ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis
familiaris].
Length = 406
Score = 286 bits (731), Expect = 3e-77
Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
Frame = +1
Query: 142 MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
++ L ELQ + + +N +++ + ++ + LL + +E G+ + ++
Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
K ++K + + V +D + P V + DSY + + LP + D V
Sbjct: 77 VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M V++ P Y IGGLDKQI+E+ E I LP+ H E FE LGI PKGVL+YGPPGTGK
Sbjct: 137 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLARA A T TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197 TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
R + GD EVQRTMLELLNQLDGF+ +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP PNEEAR I++IHSRKMN++ +N ++A A K VC
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,257,681
Number of extensions: 1497292
Number of successful extensions: 6933
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 6826
Number of HSP's successfully gapped: 88
Length of query: 394
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 289
Effective length of database: 15,374,224
Effective search space: 4443150736
Effective search space used: 4443150736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000404
(1182 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapien... 755 0.0
Alignment gi|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens]. 317 1e-86
Alignment gi|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [H... 295 4e-80
Alignment gi|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [H... 288 7e-78
Alignment gi|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 ... 286 3e-77
Alignment gi|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Ho... 286 3e-77
Alignment gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho... 267 1e-71
Alignment gi|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapie... 248 6e-66
Alignment gi|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapi... 182 7e-46
Alignment gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo... 179 4e-45
>ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens].
Length = 439
Score = 755 bits (1949), Expect = 0.0
Identities = 385/394 (97%), Positives = 387/394 (98%)
Frame = +1
Query: 1 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 8 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQ 67
Query: 181 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 68 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 127
Query: 361 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 128 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 187
Query: 541 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 188 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 247
Query: 721 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 901 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 308 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 367
Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
IHSRKMNVSPDVNYEELARCTD+ A CK VCV
Sbjct: 368 IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 401
>ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].
Length = 440
Score = 317 bits (812), Expect = 1e-86
Identities = 156/347 (44%), Positives = 230/347 (66%)
Frame = +1
Query: 139 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
+M+ E +R +++ +++K +E K+ + P V + E++D +
Sbjct: 73 LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
A++ TS +++ ++ VD + L+PG V +N + ++ L + D V
Sbjct: 121 --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173 VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
KR+DS G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP+P+E+ + RI QIH+ +M ++ DV ++L D+L A K +C
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399
>ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens].
Length = 418
Score = 295 bits (756), Expect = 4e-80
Identities = 148/362 (40%), Positives = 225/362 (62%)
Frame = +1
Query: 94 EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
E++ R + L E++ ++ + + E + +K + E++K +++P ++ +E +D
Sbjct: 38 EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97
Query: 274 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
+ A++ ++T Y++ ++ +D E LKP V ++K S
Sbjct: 98 QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137
Query: 454 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
+++ LP E DS + + D++P Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI
Sbjct: 138 ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197
Query: 634 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
PP+GVLMYGPPG GKT+LA+A A T A F+++ G + VQ ++G+G ++VRD F LAKE
Sbjct: 198 PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257
Query: 814 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
AP+IIFIDE+DAI TKRFD++ DREVQR +LELLNQ+DGF N VKVI ATNR D L
Sbjct: 258 APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317
Query: 994 DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
DPALLR GRLD KIEFP+P+ + I + KMN+S +V+ E+ D++ A
Sbjct: 318 DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377
Query: 1174 VC 1179
+C
Sbjct: 378 IC 379
>ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens].
Length = 387
Score = 288 bits (737), Expect = 7e-78
Identities = 144/336 (42%), Positives = 212/336 (63%)
Frame = +1
Query: 172 ELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVI 351
E + ++D E++K +++P ++ +E +D + A++
Sbjct: 33 EPEDLEDLYSRYKEEVKRIQSIPLVIGQFLEAVDQNT--------------------AIV 72
Query: 352 KTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQ 531
++T Y++ ++ +D E LKP V ++K S +++ LP E DS + + D++P
Sbjct: 73 GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 132
Query: 532 YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 711
Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A T
Sbjct: 133 YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 192
Query: 712 KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 891
A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++ DR
Sbjct: 193 TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 252
Query: 892 EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGR 1071
EVQR +LELLNQ+DGF N VKVI ATNR D LDPALLR GRLD KIEFP+P+ +
Sbjct: 253 EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 312
Query: 1072 IMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
I + KMN+S +V+ E+ D++ A +C
Sbjct: 313 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSIC 348
>ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens].
Length = 398
Score = 286 bits (731), Expect = 3e-77
Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
Frame = +1
Query: 142 MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
++ L ELQ + + +N +++ + ++ + LL + +E G+ + ++
Sbjct: 12 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 68
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
K ++K + + V +D + P V + DSY + + LP + D V
Sbjct: 69 VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 128
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M V++ P Y IGGLDKQI+E+ E I LP+ H E FE LGI PKGVL+YGPPGTGK
Sbjct: 129 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 188
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLARA A T TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 189 TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 248
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
R + GD EVQRTMLELLNQLDGF+ +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 249 SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 308
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP PNEEAR I++IHSRKMN++ +N ++A A K VC
Sbjct: 309 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 355
>ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens].
Length = 406
Score = 286 bits (731), Expect = 3e-77
Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
Frame = +1
Query: 142 MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
++ L ELQ + + +N +++ + ++ + LL + +E G+ + ++
Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
K ++K + + V +D + P V + DSY + + LP + D V
Sbjct: 77 VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M V++ P Y IGGLDKQI+E+ E I LP+ H E FE LGI PKGVL+YGPPGTGK
Sbjct: 137 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLARA A T TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197 TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
R + GD EVQRTMLELLNQLDGF+ +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP PNEEAR I++IHSRKMN++ +N ++A A K VC
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363
>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
Length = 433
Score = 267 bits (683), Expect = 1e-71
Identities = 132/256 (51%), Positives = 178/256 (69%)
Frame = +1
Query: 412 LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
++ G VGV+++ Y I LP + D V M+V+E+P YSD+GG +QI++L E +
Sbjct: 134 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193
Query: 592 PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194 PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253
Query: 772 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
A++VR+ F +A+ K +IF DE+DAIG RFD GD EVQRTMLEL+NQLDGF P
Sbjct: 254 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
Query: 952 QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
+KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R I +IH+R M+V D+ +E L
Sbjct: 314 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373
Query: 1132 ARCTDELQRAPCKVVC 1179
AR A + VC
Sbjct: 374 ARLCPNSTGAEIRSVC 389
>ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens].
Length = 403
Score = 248 bits (634), Expect = 6e-66
Identities = 127/278 (45%), Positives = 179/278 (64%)
Frame = +1
Query: 346 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
++K + Y + +D KLKPG V ++ + I+ LP E D V M ++
Sbjct: 84 IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 143
Query: 526 EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 144 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203
Query: 706 QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
Q FLK+ +V +IG+ A+L+R+ F A++ P IIF+DE+DAIG +RF +
Sbjct: 204 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263
Query: 886 DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
DRE+QRT++ELLNQ+DGF +VK+I ATNR D LDPALLR GRLD KI +PNE+AR
Sbjct: 264 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323
Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
I++IH+ + +++YE + + +D A + VC
Sbjct: 324 LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVC 361
>ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens].
Length = 893
Score = 182 bits (461), Expect = 7e-46
Identities = 111/320 (34%), Positives = 176/320 (55%)
Frame = +1
Query: 220 KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 399
K+ + +P+L++ ELL + + GA++ + G CA+ + +Q LP + +
Sbjct: 535 KLLRRVPHLLTEA-ELLQLANSAHGYVGADLKVLCNEAGLCALRRILKKQPN-LPDVKVA 592
Query: 400 DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 579
K+ D L+ + S ++ + +D P +SDIGGL+ +L +
Sbjct: 593 GLVKITLKDF----------LQAMNDIRPSAMREIAIDV-PNVSWSDIGGLESIKLKLEQ 641
Query: 580 AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 759
A+ P+ H E F +GIQPPKGVL+YGPPG KT++A+A A ++ FL + GP+L+ +
Sbjct: 642 AVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKY 701
Query: 760 IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 939
+G+ + VR+ F A+ APSIIF DELDA+ +R S AG+ R + +LL ++DG
Sbjct: 702 VGESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAGN-VADRVLAQLLTEMDGI 760
Query: 940 QPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVN 1119
+ V ++AATNR D +D AL+R GR+D I P+P+ R I ++ M VS +V+
Sbjct: 761 EQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVD 820
Query: 1120 YEELARCTDELQRAPCKVVC 1179
+EL TD A VC
Sbjct: 821 LDELILQTDAYSGAEIVAVC 840
Score = 150 bits (378), Expect = 3e-36
Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 8/239 (3%)
Frame = +1
Query: 487 SRVKAMEVDERPTEQ-------YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKG 645
+RV E+D+ EQ Y IGGL Q++ + E I LP+ E F++ GI P+G
Sbjct: 330 TRVNFTEIDKNSKEQDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRG 389
Query: 646 VLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSI 825
VL+YGPPGTGKT++ARA A + A + GP+++ F G+ +R FA A + PSI
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449
Query: 826 IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPAL 1005
IFIDELDA+ KR ++ ++ V ++L L++ + QV V+ ATNR LD AL
Sbjct: 450 IFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAAL 509
Query: 1006 LRSGRLDPKIEFPMPNEEARGRIMQIHSRKM-NVSPDVNYEELARCTDELQRAPCKVVC 1179
R GR D +IE +PN + R I+Q R++ ++ + +LA A KV+C
Sbjct: 510 RRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLC 568
>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
Length = 806
Score = 179 bits (454), Expect = 4e-45
Identities = 93/224 (41%), Positives = 136/224 (60%)
Frame = +1
Query: 508 VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
V E P + DIGGL+ +EL E + P+ H +KF G+ P KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 688 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
A+A A + +A F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 868 DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
+ G R + ++L ++DG V +I ATNR DI+DPA+LR GRLD I P+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
P+E++R I++ + RK V+ DV+ E LA+ T+ A +C
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 178 bits (452), Expect = 8e-45
Identities = 114/346 (32%), Positives = 185/346 (53%), Gaps = 21/346 (6%)
Frame = +1
Query: 205 NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
+ EKI++N+ + L + +++ + P + G I +D +G + +
Sbjct: 78 SDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137
Query: 373 YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
YFL ++ GD+ G+ + ++ET P+ Y +K
Sbjct: 138 YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 505 EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
+ +E E Y DIGG KQ+ ++ E + LP+ H F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 682 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
L+ARA A +T A F + GP+++ G+ +R AF A++ AP+IIFIDELDAI K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 862 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
R EK +R + +LL +DG + V V+AATNR + +DPAL R GR D +++
Sbjct: 313 R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
+P+ R I+QIH++ M ++ DV+ E++A T A +C
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,182,644
Number of extensions: 1459241
Number of successful extensions: 6391
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 6308
Number of HSP's successfully gapped: 56
Length of query: 394
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 289
Effective length of database: 14,835,944
Effective search space: 4287587816
Effective search space used: 4287587816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000404
(1182 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculu... 755 0.0
Alignment gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus]. 317 1e-86
Alignment gi|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculu... 295 4e-80
Alignment gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]. 286 3e-77
Alignment gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus]. 267 1e-71
Alignment gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul... 248 5e-66
Alignment gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ... 179 4e-45
Alignment gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform... 177 1e-44
Alignment gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ... 177 1e-44
Alignment gi|NP_081406.1| AFG3-like protein 2 [Mus musculus]. 169 5e-42
>ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus].
Length = 442
Score = 755 bits (1950), Expect = 0.0
Identities = 386/394 (97%), Positives = 387/394 (98%)
Frame = +1
Query: 1 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 11 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 70
Query: 181 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 71 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 130
Query: 361 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 131 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 190
Query: 541 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 191 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 250
Query: 721 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 251 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 310
Query: 901 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 311 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 370
Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
IHSRKMNVSPDVNYEELARCTD+ A CK VCV
Sbjct: 371 IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 404
>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
Length = 440
Score = 317 bits (812), Expect = 1e-86
Identities = 156/347 (44%), Positives = 230/347 (66%)
Frame = +1
Query: 139 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
+M+ E +R +++ +++K +E K+ + P V + E++D +
Sbjct: 73 LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
A++ TS +++ ++ VD + L+PG V +N + ++ L + D V
Sbjct: 121 --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173 VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
KR+DS G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP+P+E+ + RI QIH+ +M ++ DV ++L D+L A K +C
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399
>ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus].
Length = 418
Score = 295 bits (756), Expect = 4e-80
Identities = 148/362 (40%), Positives = 225/362 (62%)
Frame = +1
Query: 94 EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
E++ R + L E++ ++ + + E + +K + E++K +++P ++ +E +D
Sbjct: 38 EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97
Query: 274 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
+ A++ ++T Y++ ++ +D E LKP V ++K S
Sbjct: 98 QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137
Query: 454 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
+++ LP E DS + + D++P Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI
Sbjct: 138 ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197
Query: 634 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
PP+GVLMYGPPG GKT+LA+A A T A F+++ G + VQ ++G+G ++VRD F LAKE
Sbjct: 198 PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257
Query: 814 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
AP+IIFIDE+DAI TKRFD++ DREVQR +LELLNQ+DGF N VKVI ATNR D L
Sbjct: 258 APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317
Query: 994 DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
DPALLR GRLD KIEFP+P+ + I + KMN+S +V+ E+ D++ A
Sbjct: 318 DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377
Query: 1174 VC 1179
+C
Sbjct: 378 IC 379
>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
Length = 406
Score = 286 bits (731), Expect = 3e-77
Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
Frame = +1
Query: 142 MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
++ L ELQ + + +N +++ + ++ + LL + +E G+ + ++
Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
K ++K + + V +D + P V + DSY + + LP + D V
Sbjct: 77 VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M V++ P Y IGGLDKQI+E+ E I LP+ H E FE LGI PKGVL+YGPPGTGK
Sbjct: 137 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLARA A T TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197 TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
R + GD EVQRTMLELLNQLDGF+ +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP PNEEAR I++IHSRKMN++ +N ++A A K VC
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363
>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
Length = 475
Score = 267 bits (683), Expect = 1e-71
Identities = 132/256 (51%), Positives = 178/256 (69%)
Frame = +1
Query: 412 LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
++ G VGV+++ Y I LP + D V M+V+E+P YSD+GG +QI++L E +
Sbjct: 176 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 235
Query: 592 PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 236 PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 295
Query: 772 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
A++VR+ F +A+ K +IF DE+DAIG RFD GD EVQRTMLEL+NQLDGF P
Sbjct: 296 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 355
Query: 952 QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
+KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R I +IH+R M+V D+ +E L
Sbjct: 356 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 415
Query: 1132 ARCTDELQRAPCKVVC 1179
AR A + VC
Sbjct: 416 ARLCPNSTGAEIRSVC 431
>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
Length = 389
Score = 248 bits (634), Expect = 5e-66
Identities = 127/278 (45%), Positives = 179/278 (64%)
Frame = +1
Query: 346 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
++K + Y + +D KLKPG V ++ + I+ LP E D V M ++
Sbjct: 70 IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 129
Query: 526 EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 130 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189
Query: 706 QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
Q FLK+ +V +IG+ A+L+R+ F A++ P IIF+DE+DAIG +RF +
Sbjct: 190 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249
Query: 886 DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
DRE+QRT++ELLNQ+DGF +VK+I ATNR D LDPALLR GRLD KI +PNE+AR
Sbjct: 250 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309
Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
I++IH+ + +++YE + + +D A + VC
Sbjct: 310 LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVC 347
>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
Length = 806
Score = 179 bits (454), Expect = 4e-45
Identities = 93/224 (41%), Positives = 136/224 (60%)
Frame = +1
Query: 508 VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
V E P + DIGGL+ +EL E + P+ H +KF G+ P KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 688 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
A+A A + +A F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 868 DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
+ G R + ++L ++DG V +I ATNR DI+DPA+LR GRLD I P+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
P+E++R I++ + RK V+ DV+ E LA+ T+ A +C
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 178 bits (452), Expect = 6e-45
Identities = 114/346 (32%), Positives = 185/346 (53%), Gaps = 21/346 (6%)
Frame = +1
Query: 205 NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
+ EKI++N+ + L + +++ + P + G I +D +G + +
Sbjct: 78 SDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137
Query: 373 YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
YFL ++ GD+ G+ + ++ET P+ Y +K
Sbjct: 138 YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 505 EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
+ +E E Y DIGG KQ+ ++ E + LP+ H F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 682 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
L+ARA A +T A F + GP+++ G+ +R AF A++ AP+IIFIDELDAI K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 862 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
R EK +R + +LL +DG + V V+AATNR + +DPAL R GR D +++
Sbjct: 313 R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
+P+ R I+QIH++ M ++ DV+ E++A T A +C
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415
>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
Length = 893
Score = 177 bits (450), Expect = 1e-44
Identities = 91/220 (41%), Positives = 134/220 (60%)
Frame = +1
Query: 520 PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 699
P +SDIGGL+ +L +A+ P+ H + F +GIQPPKGVL+YGPPG KT++A+A
Sbjct: 622 PNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKAL 681
Query: 700 AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 879
A ++ FL + GP+L+ ++G+ + VR+ F A+ APSIIF DELDA+ +R S
Sbjct: 682 ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 741
Query: 880 AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEE 1059
AG+ R + +LL ++DG + V V+AATNR D +D AL+R GR+D I P+P+
Sbjct: 742 AGN-VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 800
Query: 1060 ARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
R I+ + M +S +V+ +EL TD A VC
Sbjct: 801 TRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVC 840
Score = 148 bits (373), Expect = 9e-36
Identities = 105/324 (32%), Positives = 169/324 (52%), Gaps = 6/324 (1%)
Frame = +1
Query: 127 SEIKIMKSEVLRVTHELQAM--KDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEED 300
SE M+S + ++ +L + K+ +S+ T V+ E+L +D D
Sbjct: 218 SEHSSMESSDVDLSFQLSQLDLKEPQSPSSQSTPCKPTNDRTVNKAGEVL-LDVTQSPRD 276
Query: 301 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL-VGVNKDSYLILETLPT 477
G+ + L+ KC+ S+++ PV + + LKP N D++ + + T
Sbjct: 277 GSGLGLEESTGLKCSF--DSSKEGNTQPVS---EEKLLKPASAGTKSNTDTFYFISST-T 330
Query: 478 EYDSR---VKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 648
+ R + E D + Y IGGL+ Q++ + E I LP+ E F++ GI P+G+
Sbjct: 331 RINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGL 390
Query: 649 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 828
L+YGPPGTGKT++ARA A + A + GP+++ F G+ +R FA A + PSII
Sbjct: 391 LLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSII 450
Query: 829 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALL 1008
FIDELDA+ KR ++ ++ V ++L L++ + +V V+ ATNR LD AL
Sbjct: 451 FIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALR 510
Query: 1009 RSGRLDPKIEFPMPNEEARGRIMQ 1080
R GR D +IE +PN + R I+Q
Sbjct: 511 RPGRFDKEIEIGIPNAQDRLDILQ 534
>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
Length = 892
Score = 177 bits (450), Expect = 1e-44
Identities = 91/220 (41%), Positives = 134/220 (60%)
Frame = +1
Query: 520 PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 699
P +SDIGGL+ +L +A+ P+ H + F +GIQPPKGVL+YGPPG KT++A+A
Sbjct: 621 PNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKAL 680
Query: 700 AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 879
A ++ FL + GP+L+ ++G+ + VR+ F A+ APSIIF DELDA+ +R S
Sbjct: 681 ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 740
Query: 880 AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEE 1059
AG+ R + +LL ++DG + V V+AATNR D +D AL+R GR+D I P+P+
Sbjct: 741 AGN-VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 799
Query: 1060 ARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
R I+ + M +S +V+ +EL TD A VC
Sbjct: 800 TRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVC 839
Score = 148 bits (373), Expect = 9e-36
Identities = 105/324 (32%), Positives = 169/324 (52%), Gaps = 6/324 (1%)
Frame = +1
Query: 127 SEIKIMKSEVLRVTHELQAM--KDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEED 300
SE M+S + ++ +L + K+ +S+ T V+ E+L +D D
Sbjct: 217 SEHSSMESSDVDLSFQLSQLDLKEPQSPSSQSTPCKPTNDRTVNKAGEVL-LDVTQSPRD 275
Query: 301 GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL-VGVNKDSYLILETLPT 477
G+ + L+ KC+ S+++ PV + + LKP N D++ + + T
Sbjct: 276 GSGLGLEESTGLKCSF--DSSKEGNTQPVS---EEKLLKPASAGTKSNTDTFYFISST-T 329
Query: 478 EYDSR---VKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 648
+ R + E D + Y IGGL+ Q++ + E I LP+ E F++ GI P+G+
Sbjct: 330 RINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGL 389
Query: 649 LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 828
L+YGPPGTGKT++ARA A + A + GP+++ F G+ +R FA A + PSII
Sbjct: 390 LLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSII 449
Query: 829 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALL 1008
FIDELDA+ KR ++ ++ V ++L L++ + +V V+ ATNR LD AL
Sbjct: 450 FIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALR 509
Query: 1009 RSGRLDPKIEFPMPNEEARGRIMQ 1080
R GR D +IE +PN + R I+Q
Sbjct: 510 RPGRFDKEIEIGIPNAQDRLDILQ 533
>ref|NP_081406.1| AFG3-like protein 2 [Mus musculus].
Length = 802
Score = 169 bits (427), Expect = 5e-42
Identities = 88/220 (40%), Positives = 137/220 (62%)
Frame = +1
Query: 478 EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 657
E ++V E+D + + D+ G ++ E++E + N K+ +++LG + PKG ++
Sbjct: 292 ETTAKVLKDEIDVK----FKDVAGCEEAKLEIMEFVNFLKNPKQ-YQDLGAKIPKGAILT 346
Query: 658 GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 837
GPPGTGKTLLA+A A + F+ ++G + ++MF+G G VRD FALA++ AP I+FID
Sbjct: 347 GPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFID 406
Query: 838 ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSG 1017
E+DA+G KR G E + T+ +LL ++DGF T V ++A TNR DILDPALLR G
Sbjct: 407 EIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPG 466
Query: 1018 RLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELAR 1137
R D +I P+ + R I ++H R + + + ++LAR
Sbjct: 467 RFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLAR 506
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,467,942
Number of extensions: 1204965
Number of successful extensions: 5267
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5208
Number of HSP's successfully gapped: 41
Length of query: 394
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 291
Effective length of database: 12,523,851
Effective search space: 3644440641
Effective search space used: 3644440641
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000404
(1182 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6... 755 0.0
Alignment gi|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4... 317 8e-87
Alignment gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4... 316 1e-86
Alignment gi|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease... 293 1e-79
Alignment gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]. 286 2e-77
Alignment gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7... 267 7e-72
Alignment gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7... 267 7e-72
Alignment gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1... 248 4e-66
Alignment gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ... 179 3e-45
Alignment gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc... 176 2e-44
>ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa].
Length = 439
Score = 755 bits (1950), Expect = 0.0
Identities = 386/394 (97%), Positives = 387/394 (98%)
Frame = +1
Query: 1 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 8 ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 67
Query: 181 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 68 AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 127
Query: 361 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 128 TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 187
Query: 541 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 188 IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 247
Query: 721 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 248 FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307
Query: 901 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 308 RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 367
Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
IHSRKMNVSPDVNYEELARCTD+ A CK VCV
Sbjct: 368 IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 401
>ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus scrofa].
Length = 440
Score = 317 bits (812), Expect = 8e-87
Identities = 156/347 (44%), Positives = 230/347 (66%)
Frame = +1
Query: 139 IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
+M+ E +R +++ +++K +E K+ + P V + E++D +
Sbjct: 73 LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
A++ TS +++ ++ VD + L+PG V +N + ++ L + D V
Sbjct: 121 --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173 VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
KR+DS G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293 KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP+P+E+ + RI QIH+ +M ++ DV ++L D+L A K +C
Sbjct: 353 FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399
>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa].
Length = 367
Score = 316 bits (810), Expect = 1e-86
Identities = 156/346 (45%), Positives = 229/346 (66%)
Frame = +1
Query: 142 MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLD 321
M+ E +R +++ +++K +E K+ + P V + E++D +
Sbjct: 1 MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------- 47
Query: 322 SQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKA 501
A++ TS +++ ++ VD + L+PG V +N + ++ L + D V
Sbjct: 48 -------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTV 100
Query: 502 MEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKT
Sbjct: 101 MKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 160
Query: 682 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
LLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTK
Sbjct: 161 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK 220
Query: 862 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
R+DS G+RE+QRTMLELLNQLDGF VKVI ATNR++ LDPAL+R GR+D KIEF
Sbjct: 221 RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 280
Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
P+P+E+ + RI QIH+ +M ++ DV ++L D+L A K +C
Sbjct: 281 PLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 326
>ref|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
6B-like [Sus scrofa].
Length = 418
Score = 293 bits (750), Expect = 1e-79
Identities = 147/362 (40%), Positives = 224/362 (61%)
Frame = +1
Query: 94 EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
E++ R + L E++ ++ + + E + +K + ++K +++P ++ +E +D
Sbjct: 38 EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQXEVKRIQSIPLVIGQFLEAVD 97
Query: 274 VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
+ A++ ++T Y++ ++ +D E LKP V ++K S
Sbjct: 98 QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137
Query: 454 LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
+++ LP E DS + + D++P Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI
Sbjct: 138 ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197
Query: 634 PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
PP+GVLMYGPPG GKT+LA+A A T A F+++ G + VQ ++G+G ++VRD F LAKE
Sbjct: 198 PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257
Query: 814 APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
AP+IIFIDE+DAI TKRFD++ DREVQR +LELLNQ+DGF N VKVI ATNR D L
Sbjct: 258 APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317
Query: 994 DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
DPALLR GRLD KIEFP+P+ + I + KMN+S +V+ E+ D++ A
Sbjct: 318 DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377
Query: 1174 VC 1179
+C
Sbjct: 378 IC 379
>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
Length = 406
Score = 286 bits (731), Expect = 2e-77
Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
Frame = +1
Query: 142 MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
++ L ELQ + + +N +++ + ++ + LL + +E G+ + ++
Sbjct: 20 LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76
Query: 319 DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
K ++K + + V +D + P V + DSY + + LP + D V
Sbjct: 77 VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136
Query: 499 AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
M V++ P Y IGGLDKQI+E+ E I LP+ H E FE LGI PKGVL+YGPPGTGK
Sbjct: 137 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196
Query: 679 TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
TLLARA A T TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197 TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256
Query: 859 KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
R + GD EVQRTMLELLNQLDGF+ +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257 SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316
Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
FP PNEEAR I++IHSRKMN++ +N ++A A K VC
Sbjct: 317 FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363
>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 480
Score = 267 bits (683), Expect = 7e-72
Identities = 132/256 (51%), Positives = 178/256 (69%)
Frame = +1
Query: 412 LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
++ G VGV+++ Y I LP + D V M+V+E+P YSD+GG +QI++L E +
Sbjct: 181 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 240
Query: 592 PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 241 PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 300
Query: 772 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
A++VR+ F +A+ K +IF DE+DAIG RFD GD EVQRTMLEL+NQLDGF P
Sbjct: 301 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 360
Query: 952 QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
+KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R I +IH+R M+V D+ +E L
Sbjct: 361 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 420
Query: 1132 ARCTDELQRAPCKVVC 1179
AR A + VC
Sbjct: 421 ARLCPNSTGAEIRSVC 436
>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
Length = 433
Score = 267 bits (683), Expect = 7e-72
Identities = 132/256 (51%), Positives = 178/256 (69%)
Frame = +1
Query: 412 LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
++ G VGV+++ Y I LP + D V M+V+E+P YSD+GG +QI++L E +
Sbjct: 134 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193
Query: 592 PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194 PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253
Query: 772 AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
A++VR+ F +A+ K +IF DE+DAIG RFD GD EVQRTMLEL+NQLDGF P
Sbjct: 254 ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313
Query: 952 QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
+KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R I +IH+R M+V D+ +E L
Sbjct: 314 NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373
Query: 1132 ARCTDELQRAPCKVVC 1179
AR A + VC
Sbjct: 374 ARLCPNSTGAEIRSVC 389
>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
Length = 403
Score = 248 bits (634), Expect = 4e-66
Identities = 127/278 (45%), Positives = 179/278 (64%)
Frame = +1
Query: 346 VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
++K + Y + +D KLKPG V ++ + I+ LP E D V M ++
Sbjct: 84 IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 143
Query: 526 EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 144 VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203
Query: 706 QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
Q FLK+ +V +IG+ A+L+R+ F A++ P IIF+DE+DAIG +RF +
Sbjct: 204 QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263
Query: 886 DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
DRE+QRT++ELLNQ+DGF +VK+I ATNR D LDPALLR GRLD KI +PNE+AR
Sbjct: 264 DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323
Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
I++IH+ + +++YE + + +D A + VC
Sbjct: 324 LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVC 361
>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
Length = 806
Score = 179 bits (453), Expect = 3e-45
Identities = 114/346 (32%), Positives = 186/346 (53%), Gaps = 21/346 (6%)
Frame = +1
Query: 205 NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
+ EKI++N+ + L ++ +++ + P + G I +D +G + +
Sbjct: 78 SDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137
Query: 373 YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
YFL ++ GD+ G+ + ++ET P+ Y +K
Sbjct: 138 YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192
Query: 505 EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
+ +E E Y DIGG KQ+ ++ E + LP+ H F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252
Query: 682 LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
L+ARA A +T A F + GP+++ G+ +R AF A++ AP+IIFIDELDAI K
Sbjct: 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312
Query: 862 RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
R EK +R + +LL +DG + V V+AATNR + +DPAL R GR D +++
Sbjct: 313 R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369
Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
+P+ R I+QIH++ M ++ DV+ E++A T A +C
Sbjct: 370 GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415
Score = 178 bits (451), Expect = 6e-45
Identities = 92/224 (41%), Positives = 136/224 (60%)
Frame = +1
Query: 508 VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
V E P + DIGGL+ +EL + + P+ H +KF G+ P KGVL YGPPG GKTLL
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 688 ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
A+A A + +A F+ + GP+L+ M+ G+ VR+ F A++ AP ++F DELD+I R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 868 DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
+ G R + ++L ++DG V +I ATNR DI+DPA+LR GRLD I P+
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647
Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
P+E++R I++ + RK V+ DV+ E LA+ T+ A +C
Sbjct: 648 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
Length = 887
Score = 176 bits (446), Expect = 2e-44
Identities = 91/220 (41%), Positives = 131/220 (59%)
Frame = +1
Query: 520 PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 699
P +SDIGGL+ +L +A+ P+ H E F +GIQPPKGVL+YGPPG KT++A+A
Sbjct: 616 PNVSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKAL 675
Query: 700 AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 879
A ++ FL + GP+L+ ++G+ + VR+ F A+ APSIIF DELDA+ +R S
Sbjct: 676 ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 735
Query: 880 AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEE 1059
AG+ R + +LL +DG + V ++AATNR D +D AL+R GR+D I P+P+
Sbjct: 736 AGN-VADRVLAQLLTXMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 794
Query: 1060 ARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
R I + M +S +V+ EL TD A VC
Sbjct: 795 TRREIFNLQFHSMPISKEVDLNELVLQTDTYSGAEIIAVC 834
Score = 154 bits (389), Expect = 9e-38
Identities = 95/266 (35%), Positives = 148/266 (55%), Gaps = 5/266 (1%)
Frame = +1
Query: 397 VDAEKLKPGDLVGV--NKDSYLILETLPTEYDSRV--KAMEVDERPTEQYSDIGGLDKQI 564
++ E+L VG N D++ + + ++V K+ + D + Y IGGL+ Q+
Sbjct: 297 INEERLLKSPSVGAKCNTDTFYFISSTTRVNFTKVCTKSKDQDNQLKVTYDMIGGLNSQL 356
Query: 565 QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 744
+E+ E I LP+ E F++ GI PP+GVL+YGPPGTGKT++ARA A + A + GP+
Sbjct: 357 KEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPE 416
Query: 745 LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 924
++ F G+ +R FA A + PSIIFIDELDA+ KR ++ ++ V ++L L++
Sbjct: 417 IISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMD 476
Query: 925 QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKM-N 1101
+ QV V+ ATNR LD AL R GR D +IE +PN + R I+Q R++ +
Sbjct: 477 GIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPH 536
Query: 1102 VSPDVNYEELARCTDELQRAPCKVVC 1179
+ + +LA A K +C
Sbjct: 537 LLTEAELLQLANSAHGYVGADLKALC 562
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.134 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,063,365
Number of extensions: 937441
Number of successful extensions: 4292
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 4228
Number of HSP's successfully gapped: 37
Length of query: 394
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,829,335
Effective search space: 2586995155
Effective search space used: 2586995155
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000404
(1182 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 299 2e-78
>Sscrofa_Chr02
|| Length = 162569375
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 713 aggccaccttcctgaagttggcgggcccccagctggtgcagatgttcattggggatggtg 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395235 aggccaccttcctgaagttggcgggcccccagctggtgcagatgttcattggggatggtg 16395294
Query: 773 ccaagctggtccgggacgcctttgctctggccaaggagaaagcgccgtctatcatcttca 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395295 ccaagctggtccgggacgcctttgctctggccaaggagaaagcgccgtctatcatcttca 16395354
Query: 833 ttgatgagctggatgccattggtaccaagcg 863
|||||||||||||||||||||||||||||||
Sbjct: 16395355 ttgatgagctggatgccattggtaccaagcg 16395385
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 569 agctggtggaggccattgtcctgccaatgaaccacaaggagaagtttgagaacttgggga 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394963 agctggtggaggccattgtcctgccaatgaaccacaaggagaagtttgagaacttgggga 16395022
Query: 629 tccagcctccaaagggggtgctgatgtacgggcccccaggtacagggaagaccttgctgg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395023 tccagcctccaaagggggtgctgatgtacgggcccccaggtacagggaagaccttgctgg 16395082
Query: 689 cccgggcctgtgctgcacagaccaagg 715
|||||||||||||||||||||||||||
Sbjct: 16395083 cccgggcctgtgctgcacagaccaagg 16395109
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 432 gggtgtgaacaaagactcctacctgatcctggagaccctgcccacagagtatgactcgag 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394387 gggtgtgaacaaagactcctacctgatcctggagaccctgcccacagagtatgactcgag 16394446
Query: 492 ggtgaaggccatggaggtggacgagaggcccacagagcaatacagtgacatcgggggcct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394447 ggtgaaggccatggaggtggacgagaggcccacagagcaatacagtgacatcgggggcct 16394506
Query: 552 ggacaagcagattcaggag 570
|||||||||||||||||||
Sbjct: 16394507 ggacaagcagattcaggag 16394525
Score = 270 bits (136), Expect = 2e-69
Identities = 145/148 (97%)
Strand = Plus / Plus
Query: 959 aggtgattgcagccactaacagggtggacatcctggaccctgcccttctccgctcaggcc 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396424 aggtgattgcagccactaacagggtggacatcctggaccctgcccttctccgctcaggcc 16396483
Query: 1019 gcctggaccccaagattgagttcccgatgcccaacgaggaggcccggggcagaatcatgc 1078
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 16396484 gcctggaccgcaagattgagttcccgatgcccaacgaggaggcccgggccagaatcatgc 16396543
Query: 1079 aaatccactcccgaaagatgaacgtcag 1106
| ||||||||||||||||||||||||||
Sbjct: 16396544 agatccactcccgaaagatgaacgtcag 16396571
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 137 agatcatgaagagtgaagtgttacgagtcacccacgaactccaagccatgaaggacaaga 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393299 agatcatgaagagtgaagtgttacgagtcacccacgaactccaagccatgaaggacaaga 16393358
Query: 197 tcaaagagaacagtgagaaaatcaaagtgaataagaccctgccgtacctggtctccaacg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393359 tcaaagagaacagtgagaaaatcaaagtgaataagaccctgccgtacctggtctccaacg 16393418
Query: 257 tcatcgag 264
||||||||
Sbjct: 16393419 tcatcgag 16393426
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 263 agcttctggacgttgatcccaatgaccaagaggaagatggtgccaatattgacctggatt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393860 agcttctggacgttgatcccaatgaccaagaggaagatggtgccaatattgacctggatt 16393919
Query: 323 cccagaggaagggcaagtgtgcagtgatcaaaacctctacacgacag 369
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393920 cccagaggaagggcaagtgtgcagtgatcaaaacctctacacgacag 16393966
Score = 194 bits (98), Expect = 8e-47
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 863 gctttgacagcgagaaggccggagaccgggaggtgcaaaggacgatgctggagcttctga 922
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16396103 gctttgacagcgagaaggccggagaccgggaggtgcagaggacgatgctggagcttctga 16396162
Query: 923 accagctggatggattccagcccaacacccaagtgaaggtga 964
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396163 accagctggatggattccagcccaacacccaagtgaaggtga 16396204
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 53 agcaagatggaatcggggaggaagtactcaagatgtccacagaagagatcgtgcagcgca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16392643 agcaagatggaatcggggaggaagtactcaagatgtccacagaagagatcgtgcagcgca 16392702
Query: 113 cacggctgctggacagtgaaatcaag 138
||||||||||||||||||||||||||
Sbjct: 16392703 cacggctgctggacagtgaaatcaag 16392728
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 366 acagacatactttctacctgtgattgggttggtggatgctgaaaagctgaagccaggaga 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394063 acagacatactttctacctgtgattgggttggtggatgctgaaaagctgaagccaggaga 16394122
Query: 426 cttggtgg 433
||||||||
Sbjct: 16394123 cttggtgg 16394130
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1 gagagtccagtgactcggcaggagaagatggcgacggtgtgggatgaggctgag 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16392358 gagagtccagtgactcggcaggagaagatggcgacggtgtgggatgaggctgag 16392411
Score = 93.7 bits (47), Expect = 2e-16
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1104 cagtcccgacgtgaactacgaggaactggcccgctgtacagatgaactccagcgggcccc 1163
|||||||||||||||||||||||| |||||||||||||||||||| || | ||||||
Sbjct: 16397411 cagtcccgacgtgaactacgaggagctggcccgctgtacagatgacttcaacggggccca 16397470
Query: 1164 gtgcaaggttgtgtgtgtg 1182
|||||||| ||||||||||
Sbjct: 16397471 gtgcaaggctgtgtgtgtg 16397489
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,559,192
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 11
Length of query: 1182
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1161
Effective length of database: 2,808,413,156
Effective search space: 3260567674116
Effective search space used: 3260567674116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)