Animal-Genome cDNA 20110601C-000404


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000404
         (1182 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taur...   755   0.0  
Alignment   gi|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 2...   744   0.0  
Alignment   gi|NP_001014855.1| 26S protease regulatory subunit 4 [Bos tauru...   317   1e-86
Alignment   gi|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taur...   295   4e-80
Alignment   gi|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].      286   3e-77
Alignment   gi|NP_001015639.1| 26S protease regulatory subunit 7 [Bos tauru...   267   1e-71
Alignment   gi|NP_001039705.1| 26S protease regulatory subunit 10B [Bos tau...   247   2e-65
Alignment   gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B...   179   4e-45
Alignment   gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like...   177   2e-44
Alignment   gi|NP_001039676.1| AFG3-like protein 2 [Bos taurus].                 169   3e-42

>ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus].
          Length = 440

 Score =  755 bits (1949), Expect = 0.0
 Identities = 385/394 (97%), Positives = 387/394 (98%)
 Frame = +1

Query: 1    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
            ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 9    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQ 68

Query: 181  AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
            AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 69   AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 128

Query: 361  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
            TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 129  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 188

Query: 541  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
            IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 189  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 248

Query: 721  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
            FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 249  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 308

Query: 901  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
            RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 309  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 368

Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
            IHSRKMNVSPDVNYEELARCTD+   A CK VCV
Sbjct: 369  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 402


>ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3
            [Bos taurus].
          Length = 456

 Score =  744 bits (1922), Expect = 0.0
 Identities = 385/410 (93%), Positives = 387/410 (94%), Gaps = 16/410 (3%)
 Frame = +1

Query: 1    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
            ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 9    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQ 68

Query: 181  AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
            AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 69   AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 128

Query: 361  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
            TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 129  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 188

Query: 541  IGGLDKQIQE----------------LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGT 672
            IGGLDKQIQE                LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGT
Sbjct: 189  IGGLDKQIQEVREARHLTSLLCLSASLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGT 248

Query: 673  GKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI 852
            GKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI
Sbjct: 249  GKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAI 308

Query: 853  GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPK 1032
            GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD K
Sbjct: 309  GTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRK 368

Query: 1033 IEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
            IEFPMPNEEAR RIMQIHSRKMNVSPDVNYEELARCTD+   A CK VCV
Sbjct: 369  IEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 418


>ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus].
          Length = 440

 Score =  317 bits (812), Expect = 1e-86
 Identities = 156/347 (44%), Positives = 230/347 (66%)
 Frame = +1

Query: 139  IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 73   LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 121  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
            KR+DS   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293  KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP+P+E+ + RI QIH+ +M ++ DV  ++L    D+L  A  K +C
Sbjct: 353  FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399


>ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus].
          Length = 418

 Score =  295 bits (756), Expect = 4e-80
 Identities = 148/362 (40%), Positives = 225/362 (62%)
 Frame = +1

Query: 94   EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
            E++  R + L  E++ ++ +   +  E + +K +     E++K  +++P ++   +E +D
Sbjct: 38   EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97

Query: 274  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
             +                     A++ ++T   Y++ ++  +D E LKP   V ++K S 
Sbjct: 98   QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137

Query: 454  LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
             +++ LP E DS +  +  D++P   Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI 
Sbjct: 138  ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197

Query: 634  PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
            PP+GVLMYGPPG GKT+LA+A A  T A F+++ G + VQ ++G+G ++VRD F LAKE 
Sbjct: 198  PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257

Query: 814  APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
            AP+IIFIDE+DAI TKRFD++   DREVQR +LELLNQ+DGF  N  VKVI ATNR D L
Sbjct: 258  APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317

Query: 994  DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
            DPALLR GRLD KIEFP+P+   +  I    + KMN+S +V+ E+     D++  A    
Sbjct: 318  DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377

Query: 1174 VC 1179
            +C
Sbjct: 378  IC 379


>ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].
          Length = 406

 Score =  286 bits (731), Expect = 3e-77
 Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
 Frame = +1

Query: 142  MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
            ++   L    ELQ + +   +N  +++  +     ++  + LL  +    +E G+ + ++
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                  K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V 
Sbjct: 77   VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M V++ P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGK
Sbjct: 137  LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLARA A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197  TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
             R +    GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257  SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP PNEEAR  I++IHSRKMN++  +N  ++A        A  K VC
Sbjct: 317  FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363


>ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus].
          Length = 433

 Score =  267 bits (683), Expect = 1e-71
 Identities = 132/256 (51%), Positives = 178/256 (69%)
 Frame = +1

Query: 412  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 134  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193

Query: 592  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253

Query: 772  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 254  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

Query: 952  QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
             +KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 314  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373

Query: 1132 ARCTDELQRAPCKVVC 1179
            AR       A  + VC
Sbjct: 374  ARLCPNSTGAEIRSVC 389


>ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus].
          Length = 389

 Score =  247 bits (630), Expect = 2e-65
 Identities = 127/278 (45%), Positives = 178/278 (64%)
 Frame = +1

Query: 346  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 70   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 129

Query: 526  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 130  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189

Query: 706  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 190  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249

Query: 886  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLD KI   +PNE+AR
Sbjct: 250  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309

Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
              I++IH+  +    +++YE + + +D    A    VC
Sbjct: 310  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVC 347


>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
          Length = 806

 Score =  179 bits (454), Expect = 4e-45
 Identities = 93/224 (41%), Positives = 136/224 (60%)
 Frame = +1

Query: 508  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
            V E P   + DIGGL+   +EL E +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 688  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 868  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD  I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            P+E++R  I++ + RK  V+ DV+ E LA+ T+    A    +C
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691



 Score =  179 bits (453), Expect = 6e-45
 Identities = 114/346 (32%), Positives = 186/346 (53%), Gaps = 21/346 (6%)
 Frame = +1

Query: 205  NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
            + EKI++N+ +   L  ++ +++ + P    + G  I    +D   +G    +     + 
Sbjct: 78   SDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137

Query: 373  YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
            YFL          ++ GD+     G+    + ++ET P+ Y               +K  
Sbjct: 138  YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192

Query: 505  EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
            + +E   E  Y DIGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193  DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252

Query: 682  LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
            L+ARA A +T A F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  K
Sbjct: 253  LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312

Query: 862  RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
            R   EK      +R + +LL  +DG +    V V+AATNR + +DPAL R GR D +++ 
Sbjct: 313  R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369

Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
             +P+   R  I+QIH++ M ++ DV+ E++A  T     A    +C
Sbjct: 370  GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415


>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
          Length = 1004

 Score =  177 bits (448), Expect = 2e-44
 Identities = 93/231 (40%), Positives = 139/231 (60%)
 Frame = +1

Query: 487  SRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPP 666
            S ++ + VD  P   +SDIGGL+    +L +A+  P+ H E F  +GIQPPKGVL+YGPP
Sbjct: 723  SAMREVAVDV-PNVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPP 781

Query: 667  GTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELD 846
            G  KT++A+A A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELD
Sbjct: 782  GCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELD 841

Query: 847  AIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD 1026
            A+  +R  S  AG+    R + +LL ++DG +    V ++AATNR D +D AL+R GR+D
Sbjct: 842  ALAVERGSSSGAGN-VADRVLAQLLTEMDGIEQLKNVTILAATNRPDRIDKALMRPGRID 900

Query: 1027 PKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
              I  P+P+   R  I+ +    M ++ +V+  EL   TD    A    VC
Sbjct: 901  RIIYVPLPDAATRREILNLQFHSMPINNEVDLNELILQTDTYSGAEIIAVC 951



 Score =  151 bits (381), Expect = 1e-36
 Identities = 95/266 (35%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
 Frame = +1

Query: 397  VDAEKLKPGDLVGV--NKDSYLIL--ETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQI 564
            V+ E+L     VG   N D++  +  +T  +   +R  + +   +    Y  IGGL+ Q+
Sbjct: 414  VNEERLLKSPSVGAQSNTDTFYFISSKTRVSFTKNRTNSKDQANQLKVTYDMIGGLNSQL 473

Query: 565  QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 744
            +E+ E I LP+   E F++ GI PP+GVL+YGPPGTGKT++ARA A +  A    + GP+
Sbjct: 474  KEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPE 533

Query: 745  LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 924
            ++  F G+    +R  FA A  + PSIIFIDELDA+  KR  ++   ++ V  ++L L++
Sbjct: 534  IISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMD 593

Query: 925  QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKM-N 1101
             +       QV V+ ATNR   LD AL R GR D +IE  +PN + R  I+Q   R++ +
Sbjct: 594  GIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPH 653

Query: 1102 VSPDVNYEELARCTDELQRAPCKVVC 1179
            +  +    +LA        A  K +C
Sbjct: 654  LLTEAELLQLANSAHGYVGADLKALC 679


>ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus].
          Length = 805

 Score =  169 bits (429), Expect = 3e-42
 Identities = 88/220 (40%), Positives = 137/220 (62%)
 Frame = +1

Query: 478  EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 657
            E  ++V   E+D +    + D+ G ++   E++E +    N K+ +++LG + PKG ++ 
Sbjct: 294  ETTAKVLKDEIDVK----FKDVAGCEEAKLEIMEFVNFLKNPKQ-YQDLGAKIPKGAILT 348

Query: 658  GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 837
            GPPGTGKTLLA+A A +    F+ ++G + ++MF+G G   VRD FALA++ AP I+FID
Sbjct: 349  GPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFID 408

Query: 838  ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSG 1017
            E+DA+G KR      G  E + T+ +LL ++DGF   T V ++A TNR DILDPAL+R G
Sbjct: 409  EIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPG 468

Query: 1018 RLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELAR 1137
            R D +I    P+ + R  I ++H R + +   +  E+LAR
Sbjct: 469  RFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLAR 508


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.315    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,112,238
Number of extensions: 1454071
Number of successful extensions: 6744
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 6658
Number of HSP's successfully gapped: 55
Length of query: 394
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 290
Effective length of database: 14,240,222
Effective search space: 4129664380
Effective search space used: 4129664380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000404
         (1182 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533187.2| PREDICTED: similar to 26S protease regulatory s...   683   0.0  
Alignment   gi|XP_849002.1| PREDICTED: similar to 26S protease regulatory s...   681   0.0  
Alignment   gi|XP_860742.1| PREDICTED: similar to 26S protease regulatory s...   640   0.0  
Alignment   gi|XP_860675.1| PREDICTED: similar to 26S protease regulatory s...   389   e-110
Alignment   gi|XP_848524.1| PREDICTED: similar to peptidase (prosome, macro...   300   1e-81
Alignment   gi|XP_533670.1| PREDICTED: similar to 26S protease regulatory s...   295   4e-80
Alignment   gi|XP_867041.1| PREDICTED: similar to 26S protease regulatory s...   290   2e-78
Alignment   gi|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase sub...   288   7e-78
Alignment   gi|XP_867031.1| PREDICTED: similar to 26S protease regulatory s...   286   3e-77
Alignment   gi|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (S...   286   3e-77

>ref|XP_533187.2| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Proteasome subunit P50) isoform 1
            [Canis familiaris].
          Length = 402

 Score =  683 bits (1763), Expect = 0.0
 Identities = 355/385 (92%), Positives = 357/385 (92%)
 Frame = +1

Query: 28   MATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 207
            MATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN
Sbjct: 1    MATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 60

Query: 208  SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV 387
            SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV
Sbjct: 61   SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV 120

Query: 388  IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ 567
            IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME                    
Sbjct: 121  IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME-------------------- 160

Query: 568  ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 747
             LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL
Sbjct: 161  -LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 219

Query: 748  VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 927
            VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ
Sbjct: 220  VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 279

Query: 928  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVS 1107
            LDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQIHSRKMNVS
Sbjct: 280  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVS 339

Query: 1108 PDVNYEELARCTDELQRAPCKVVCV 1182
            PDVNYEELARCTD+   A CK VCV
Sbjct: 340  PDVNYEELARCTDDFNGAQCKAVCV 364


>ref|XP_849002.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
            TAT-binding protein homolog SATA) [Canis familiaris].
          Length = 403

 Score =  681 bits (1758), Expect = 0.0
 Identities = 354/385 (91%), Positives = 356/385 (92%)
 Frame = +1

Query: 28   MATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 207
            MATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN
Sbjct: 1    MATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKEN 60

Query: 208  SEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPV 387
            SEKIKVNKTLPYLVSNVIELLD                    GKCAVIKTSTRQTYFLPV
Sbjct: 61   SEKIKVNKTLPYLVSNVIELLD--------------------GKCAVIKTSTRQTYFLPV 100

Query: 388  IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ 567
            IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ
Sbjct: 101  IGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQ 160

Query: 568  ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 747
            ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL
Sbjct: 161  ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 220

Query: 748  VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 927
            VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDA GTKRFDSEKAGDREVQRTMLELLNQ
Sbjct: 221  VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQ 280

Query: 928  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVS 1107
            LDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQIHSRKMNVS
Sbjct: 281  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVS 340

Query: 1108 PDVNYEELARCTDELQRAPCKVVCV 1182
            PDVNYEELARC D+   A CK VCV
Sbjct: 341  PDVNYEELARCMDDFNGAQCKAVCV 365


>ref|XP_860742.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
            TAT-binding protein homolog SATA) isoform 3 [Canis
            familiaris].
          Length = 371

 Score =  640 bits (1651), Expect = 0.0
 Identities = 325/333 (97%), Positives = 326/333 (97%)
 Frame = +1

Query: 184  MKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTST 363
            MKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTST
Sbjct: 1    MKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTST 60

Query: 364  RQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDI 543
            RQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDI
Sbjct: 61   RQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDI 120

Query: 544  GGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATF 723
            GGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATF
Sbjct: 121  GGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATF 180

Query: 724  LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQR 903
            LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQR
Sbjct: 181  LKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQR 240

Query: 904  TMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQI 1083
            TMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQI
Sbjct: 241  TMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQI 300

Query: 1084 HSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
            HSRKMNVSPDVNYEELARCTD+   A CK VCV
Sbjct: 301  HSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 333


>ref|XP_860675.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Proteasome subunit P50) isoform 2
            [Canis familiaris].
          Length = 267

 Score =  389 bits (998), Expect(2) = e-110
 Identities = 196/205 (95%), Positives = 198/205 (96%)
 Frame = +1

Query: 568  ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 747
            +LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL
Sbjct: 25   QLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 84

Query: 748  VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 927
            VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ
Sbjct: 85   VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 144

Query: 928  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVS 1107
            LDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQIHSRKMNVS
Sbjct: 145  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVS 204

Query: 1108 PDVNYEELARCTDELQRAPCKVVCV 1182
            PDVNYEELARCTD+   A CK VCV
Sbjct: 205  PDVNYEELARCTDDFNGAQCKAVCV 229



 Score = 28.1 bits (61), Expect(2) = e-110
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = +2

Query: 524 QSNTVTSGAWTSRFR---SW 574
           ++N VTSGAW SRFR   SW
Sbjct: 5   RNNIVTSGAWISRFRRTSSW 24


>ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
            ATPase 1 isoform 2 [Canis familiaris].
          Length = 440

 Score =  300 bits (769), Expect = 1e-81
 Identities = 150/347 (43%), Positives = 224/347 (64%)
 Frame = +1

Query: 139  IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
            +M+ E +R   +++ +K+K +E    +   +  P  V  + E++D +             
Sbjct: 73   LMEEEFIRNQEQMKPLKEKQEEERSTVDDLRGTPMSVGTLEEIIDDNH------------ 120

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                    A++ TS    +++ ++  VD + L+ G  V +N   + ++  L  + D  V 
Sbjct: 121  --------AIVSTSVGSEHYVSILSFVDKDLLELGCSVLLNHKVHAVIGVLMDDTDPLVI 172

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M+V++ P E Y+DI  LD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173  VMKVEKTPQETYADIRALDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLA+A A QT ATFL++ G QL+Q ++G+G KL+R+ F + +E APSI+FIDE+DAIGT
Sbjct: 233  TLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRELFRVVEEHAPSIVFIDEIDAIGT 292

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
            KR+DS   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293  KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP+P+E+ + RI QIH+ +M ++  V  ++L    D+L  A  K +C
Sbjct: 353  FPLPDEKTKKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAIC 399


>ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
            (MB67 interacting protein) (TAT-binding protein-7)
            (TBP-7) isoform 1 [Canis familiaris].
          Length = 418

 Score =  295 bits (756), Expect = 4e-80
 Identities = 148/362 (40%), Positives = 225/362 (62%)
 Frame = +1

Query: 94   EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
            E++  R + L  E++ ++ +   +  E + +K +     E++K  +++P ++   +E +D
Sbjct: 38   EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97

Query: 274  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
             +                     A++ ++T   Y++ ++  +D E LKP   V ++K S 
Sbjct: 98   QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137

Query: 454  LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
             +++ LP E DS +  +  D++P   Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI 
Sbjct: 138  ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197

Query: 634  PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
            PP+GVLMYGPPG GKT+LA+A A  T A F+++ G + VQ ++G+G ++VRD F LAKE 
Sbjct: 198  PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257

Query: 814  APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
            AP+IIFIDE+DAI TKRFD++   DREVQR +LELLNQ+DGF  N  VKVI ATNR D L
Sbjct: 258  APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317

Query: 994  DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
            DPALLR GRLD KIEFP+P+   +  I    + KMN+S +V+ E+     D++  A    
Sbjct: 318  DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377

Query: 1174 VC 1179
            +C
Sbjct: 378  IC 379


>ref|XP_867041.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
            (MB67 interacting protein) (TAT-binding protein-7)
            (TBP-7) isoform 4 [Canis familiaris].
          Length = 419

 Score =  290 bits (741), Expect = 2e-78
 Identities = 147/363 (40%), Positives = 225/363 (61%), Gaps = 1/363 (0%)
 Frame = +1

Query: 94   EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
            E++  R + L  E++ ++ +   +  E + +K +     E++K  +++P ++   +E +D
Sbjct: 38   EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97

Query: 274  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
             +                     A++ ++T   Y++ ++  +D E LKP   V ++K S 
Sbjct: 98   QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137

Query: 454  LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
             +++ LP E DS +  +  D++P   Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI 
Sbjct: 138  ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197

Query: 634  PPKGVLMYGPPGTGKTLLARACAAQTK-ATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 810
            PP+GVLMYGPPG GKT+LA+A A  T  + F+++ G + VQ ++G+G ++VRD F LAKE
Sbjct: 198  PPRGVLMYGPPGCGKTMLAKAVAHHTTDSAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 257

Query: 811  KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDI 990
             AP+IIFIDE+DAI TKRFD++   DREVQR +LELLNQ+DGF  N  VKVI ATNR D 
Sbjct: 258  NAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADT 317

Query: 991  LDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCK 1170
            LDPALLR GRLD KIEFP+P+   +  I    + KMN+S +V+ E+     D++  A   
Sbjct: 318  LDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADIN 377

Query: 1171 VVC 1179
             +C
Sbjct: 378  SIC 380


>ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2
            isoform 2 [Canis familiaris].
          Length = 387

 Score =  288 bits (737), Expect = 7e-78
 Identities = 144/336 (42%), Positives = 212/336 (63%)
 Frame = +1

Query: 172  ELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVI 351
            E + ++D      E++K  +++P ++   +E +D +                     A++
Sbjct: 33   EPEDLEDLYSRYKEEVKRIQSIPLVIGQFLEAVDQNT--------------------AIV 72

Query: 352  KTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQ 531
             ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P   
Sbjct: 73   GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 132

Query: 532  YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 711
            Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A  T
Sbjct: 133  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 192

Query: 712  KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 891
             A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++   DR
Sbjct: 193  TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 252

Query: 892  EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGR 1071
            EVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLD KIEFP+P+   +  
Sbjct: 253  EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 312

Query: 1072 IMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            I    + KMN+S +V+ E+     D++  A    +C
Sbjct: 313  IFSTITSKMNLSEEVDLEDYVARPDKISGADINSIC 348


>ref|XP_867031.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
            (MB67 interacting protein) (TAT-binding protein-7)
            (TBP-7) isoform 3 [Canis familiaris].
          Length = 433

 Score =  286 bits (732), Expect = 3e-77
 Identities = 149/377 (39%), Positives = 225/377 (59%), Gaps = 15/377 (3%)
 Frame = +1

Query: 94   EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
            E++  R + L  E++ ++ +   +  E + +K +     E++K  +++P ++   +E +D
Sbjct: 38   EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97

Query: 274  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
             +                     A++ ++T   Y++ ++  +D E LKP   V ++K S 
Sbjct: 98   QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137

Query: 454  LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENL--- 624
             +++ LP E DS +  +  D++P   Y+DIGG+D Q QE+ EA+ LP+ H E ++ L   
Sbjct: 138  ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQLVKG 197

Query: 625  ------------GIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGD 768
                        GI PP+GVLMYGPPG GKT+LA+A A  T A F+++ G + VQ ++G+
Sbjct: 198  LPALSFTSAFQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGE 257

Query: 769  GAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN 948
            G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++   DREVQR +LELLNQ+DGF  N
Sbjct: 258  GPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQN 317

Query: 949  TQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEE 1128
              VKVI ATNR D LDPALLR GRLD KIEFP+P+   +  I    + KMN+S +V+ E+
Sbjct: 318  VNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLED 377

Query: 1129 LARCTDELQRAPCKVVC 1179
                 D++  A    +C
Sbjct: 378  YVARPDKISGADINSIC 394


>ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis
            familiaris].
          Length = 406

 Score =  286 bits (731), Expect = 3e-77
 Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
 Frame = +1

Query: 142  MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
            ++   L    ELQ + +   +N  +++  +     ++  + LL  +    +E G+ + ++
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                  K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V 
Sbjct: 77   VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M V++ P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGK
Sbjct: 137  LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLARA A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197  TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
             R +    GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257  SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP PNEEAR  I++IHSRKMN++  +N  ++A        A  K VC
Sbjct: 317  FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.315    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,257,681
Number of extensions: 1497292
Number of successful extensions: 6933
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 6826
Number of HSP's successfully gapped: 88
Length of query: 394
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 289
Effective length of database: 15,374,224
Effective search space: 4443150736
Effective search space used: 4443150736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000404
         (1182 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapien...   755   0.0  
Alignment   gi|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].    317   1e-86
Alignment   gi|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [H...   295   4e-80
Alignment   gi|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [H...   288   7e-78
Alignment   gi|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 ...   286   3e-77
Alignment   gi|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Ho...   286   3e-77
Alignment   gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho...   267   1e-71
Alignment   gi|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapie...   248   6e-66
Alignment   gi|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapi...   182   7e-46
Alignment   gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo...   179   4e-45

>ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens].
          Length = 439

 Score =  755 bits (1949), Expect = 0.0
 Identities = 385/394 (97%), Positives = 387/394 (98%)
 Frame = +1

Query: 1    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
            ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEI+QRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 8    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQ 67

Query: 181  AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
            AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 68   AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 127

Query: 361  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
            TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 128  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 187

Query: 541  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
            IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 188  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 247

Query: 721  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
            FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 248  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307

Query: 901  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
            RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 308  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 367

Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
            IHSRKMNVSPDVNYEELARCTD+   A CK VCV
Sbjct: 368  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 401


>ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].
          Length = 440

 Score =  317 bits (812), Expect = 1e-86
 Identities = 156/347 (44%), Positives = 230/347 (66%)
 Frame = +1

Query: 139  IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 73   LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 121  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
            KR+DS   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293  KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP+P+E+ + RI QIH+ +M ++ DV  ++L    D+L  A  K +C
Sbjct: 353  FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399


>ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens].
          Length = 418

 Score =  295 bits (756), Expect = 4e-80
 Identities = 148/362 (40%), Positives = 225/362 (62%)
 Frame = +1

Query: 94   EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
            E++  R + L  E++ ++ +   +  E + +K +     E++K  +++P ++   +E +D
Sbjct: 38   EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97

Query: 274  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
             +                     A++ ++T   Y++ ++  +D E LKP   V ++K S 
Sbjct: 98   QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137

Query: 454  LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
             +++ LP E DS +  +  D++P   Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI 
Sbjct: 138  ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197

Query: 634  PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
            PP+GVLMYGPPG GKT+LA+A A  T A F+++ G + VQ ++G+G ++VRD F LAKE 
Sbjct: 198  PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257

Query: 814  APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
            AP+IIFIDE+DAI TKRFD++   DREVQR +LELLNQ+DGF  N  VKVI ATNR D L
Sbjct: 258  APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317

Query: 994  DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
            DPALLR GRLD KIEFP+P+   +  I    + KMN+S +V+ E+     D++  A    
Sbjct: 318  DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377

Query: 1174 VC 1179
            +C
Sbjct: 378  IC 379


>ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens].
          Length = 387

 Score =  288 bits (737), Expect = 7e-78
 Identities = 144/336 (42%), Positives = 212/336 (63%)
 Frame = +1

Query: 172  ELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVI 351
            E + ++D      E++K  +++P ++   +E +D +                     A++
Sbjct: 33   EPEDLEDLYSRYKEEVKRIQSIPLVIGQFLEAVDQNT--------------------AIV 72

Query: 352  KTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQ 531
             ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P   
Sbjct: 73   GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 132

Query: 532  YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 711
            Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A  T
Sbjct: 133  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 192

Query: 712  KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 891
             A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++   DR
Sbjct: 193  TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 252

Query: 892  EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGR 1071
            EVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLD KIEFP+P+   +  
Sbjct: 253  EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 312

Query: 1072 IMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            I    + KMN+S +V+ E+     D++  A    +C
Sbjct: 313  IFSTITSKMNLSEEVDLEDYVARPDKISGADINSIC 348


>ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens].
          Length = 398

 Score =  286 bits (731), Expect = 3e-77
 Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
 Frame = +1

Query: 142  MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
            ++   L    ELQ + +   +N  +++  +     ++  + LL  +    +E G+ + ++
Sbjct: 12   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 68

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                  K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V 
Sbjct: 69   VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 128

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M V++ P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGK
Sbjct: 129  LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 188

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLARA A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 189  TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 248

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
             R +    GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 249  SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 308

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP PNEEAR  I++IHSRKMN++  +N  ++A        A  K VC
Sbjct: 309  FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 355


>ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens].
          Length = 406

 Score =  286 bits (731), Expect = 3e-77
 Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
 Frame = +1

Query: 142  MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
            ++   L    ELQ + +   +N  +++  +     ++  + LL  +    +E G+ + ++
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                  K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V 
Sbjct: 77   VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M V++ P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGK
Sbjct: 137  LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLARA A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197  TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
             R +    GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257  SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP PNEEAR  I++IHSRKMN++  +N  ++A        A  K VC
Sbjct: 317  FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363


>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
          Length = 433

 Score =  267 bits (683), Expect = 1e-71
 Identities = 132/256 (51%), Positives = 178/256 (69%)
 Frame = +1

Query: 412  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 134  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193

Query: 592  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253

Query: 772  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 254  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

Query: 952  QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
             +KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 314  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373

Query: 1132 ARCTDELQRAPCKVVC 1179
            AR       A  + VC
Sbjct: 374  ARLCPNSTGAEIRSVC 389


>ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens].
          Length = 403

 Score =  248 bits (634), Expect = 6e-66
 Identities = 127/278 (45%), Positives = 179/278 (64%)
 Frame = +1

Query: 346  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 84   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 143

Query: 526  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 144  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203

Query: 706  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 204  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263

Query: 886  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLD KI   +PNE+AR
Sbjct: 264  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323

Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
              I++IH+  +    +++YE + + +D    A  + VC
Sbjct: 324  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVC 361


>ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens].
          Length = 893

 Score =  182 bits (461), Expect = 7e-46
 Identities = 111/320 (34%), Positives = 176/320 (55%)
 Frame = +1

Query: 220  KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 399
            K+ + +P+L++   ELL +  +     GA++ +     G CA+ +   +Q   LP + + 
Sbjct: 535  KLLRRVPHLLTEA-ELLQLANSAHGYVGADLKVLCNEAGLCALRRILKKQPN-LPDVKVA 592

Query: 400  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 579
               K+   D           L+ +     S ++ + +D  P   +SDIGGL+    +L +
Sbjct: 593  GLVKITLKDF----------LQAMNDIRPSAMREIAIDV-PNVSWSDIGGLESIKLKLEQ 641

Query: 580  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 759
            A+  P+ H E F  +GIQPPKGVL+YGPPG  KT++A+A A ++   FL + GP+L+  +
Sbjct: 642  AVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKY 701

Query: 760  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 939
            +G+  + VR+ F  A+  APSIIF DELDA+  +R  S  AG+    R + +LL ++DG 
Sbjct: 702  VGESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAGN-VADRVLAQLLTEMDGI 760

Query: 940  QPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVN 1119
            +    V ++AATNR D +D AL+R GR+D  I  P+P+   R  I ++    M VS +V+
Sbjct: 761  EQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVD 820

Query: 1120 YEELARCTDELQRAPCKVVC 1179
             +EL   TD    A    VC
Sbjct: 821  LDELILQTDAYSGAEIVAVC 840



 Score =  150 bits (378), Expect = 3e-36
 Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 8/239 (3%)
 Frame = +1

Query: 487  SRVKAMEVDERPTEQ-------YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKG 645
            +RV   E+D+   EQ       Y  IGGL  Q++ + E I LP+   E F++ GI  P+G
Sbjct: 330  TRVNFTEIDKNSKEQDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRG 389

Query: 646  VLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSI 825
            VL+YGPPGTGKT++ARA A +  A    + GP+++  F G+    +R  FA A  + PSI
Sbjct: 390  VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 826  IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPAL 1005
            IFIDELDA+  KR  ++   ++ V  ++L L++ +       QV V+ ATNR   LD AL
Sbjct: 450  IFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAAL 509

Query: 1006 LRSGRLDPKIEFPMPNEEARGRIMQIHSRKM-NVSPDVNYEELARCTDELQRAPCKVVC 1179
             R GR D +IE  +PN + R  I+Q   R++ ++  +    +LA        A  KV+C
Sbjct: 510  RRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLC 568


>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
          Length = 806

 Score =  179 bits (454), Expect = 4e-45
 Identities = 93/224 (41%), Positives = 136/224 (60%)
 Frame = +1

Query: 508  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
            V E P   + DIGGL+   +EL E +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 688  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 868  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD  I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            P+E++R  I++ + RK  V+ DV+ E LA+ T+    A    +C
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691



 Score =  178 bits (452), Expect = 8e-45
 Identities = 114/346 (32%), Positives = 185/346 (53%), Gaps = 21/346 (6%)
 Frame = +1

Query: 205  NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
            + EKI++N+ +   L   + +++ + P    + G  I    +D   +G    +     + 
Sbjct: 78   SDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137

Query: 373  YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
            YFL          ++ GD+     G+    + ++ET P+ Y               +K  
Sbjct: 138  YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192

Query: 505  EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
            + +E   E  Y DIGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193  DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252

Query: 682  LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
            L+ARA A +T A F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  K
Sbjct: 253  LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312

Query: 862  RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
            R   EK      +R + +LL  +DG +    V V+AATNR + +DPAL R GR D +++ 
Sbjct: 313  R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369

Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
             +P+   R  I+QIH++ M ++ DV+ E++A  T     A    +C
Sbjct: 370  GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.315    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,182,644
Number of extensions: 1459241
Number of successful extensions: 6391
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 6308
Number of HSP's successfully gapped: 56
Length of query: 394
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 289
Effective length of database: 14,835,944
Effective search space: 4287587816
Effective search space used: 4287587816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000404
         (1182 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculu...   755   0.0  
Alignment   gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].    317   1e-86
Alignment   gi|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculu...   295   4e-80
Alignment   gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].    286   3e-77
Alignment   gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].    267   1e-71
Alignment   gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul...   248   5e-66
Alignment   gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ...   179   4e-45
Alignment   gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform...   177   1e-44
Alignment   gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ...   177   1e-44
Alignment   gi|NP_081406.1| AFG3-like protein 2 [Mus musculus].                  169   5e-42

>ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus].
          Length = 442

 Score =  755 bits (1950), Expect = 0.0
 Identities = 386/394 (97%), Positives = 387/394 (98%)
 Frame = +1

Query: 1    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
            ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 11   ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 70

Query: 181  AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
            AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 71   AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 130

Query: 361  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
            TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 131  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 190

Query: 541  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
            IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 191  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 250

Query: 721  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
            FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 251  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 310

Query: 901  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
            RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 311  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 370

Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
            IHSRKMNVSPDVNYEELARCTD+   A CK VCV
Sbjct: 371  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 404


>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
          Length = 440

 Score =  317 bits (812), Expect = 1e-86
 Identities = 156/347 (44%), Positives = 230/347 (66%)
 Frame = +1

Query: 139  IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 73   LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 121  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
            KR+DS   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293  KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP+P+E+ + RI QIH+ +M ++ DV  ++L    D+L  A  K +C
Sbjct: 353  FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399


>ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus].
          Length = 418

 Score =  295 bits (756), Expect = 4e-80
 Identities = 148/362 (40%), Positives = 225/362 (62%)
 Frame = +1

Query: 94   EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
            E++  R + L  E++ ++ +   +  E + +K +     E++K  +++P ++   +E +D
Sbjct: 38   EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVD 97

Query: 274  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
             +                     A++ ++T   Y++ ++  +D E LKP   V ++K S 
Sbjct: 98   QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137

Query: 454  LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
             +++ LP E DS +  +  D++P   Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI 
Sbjct: 138  ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197

Query: 634  PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
            PP+GVLMYGPPG GKT+LA+A A  T A F+++ G + VQ ++G+G ++VRD F LAKE 
Sbjct: 198  PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257

Query: 814  APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
            AP+IIFIDE+DAI TKRFD++   DREVQR +LELLNQ+DGF  N  VKVI ATNR D L
Sbjct: 258  APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317

Query: 994  DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
            DPALLR GRLD KIEFP+P+   +  I    + KMN+S +V+ E+     D++  A    
Sbjct: 318  DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377

Query: 1174 VC 1179
            +C
Sbjct: 378  IC 379


>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
          Length = 406

 Score =  286 bits (731), Expect = 3e-77
 Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
 Frame = +1

Query: 142  MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
            ++   L    ELQ + +   +N  +++  +     ++  + LL  +    +E G+ + ++
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                  K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V 
Sbjct: 77   VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M V++ P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGK
Sbjct: 137  LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLARA A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197  TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
             R +    GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257  SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP PNEEAR  I++IHSRKMN++  +N  ++A        A  K VC
Sbjct: 317  FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363


>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
          Length = 475

 Score =  267 bits (683), Expect = 1e-71
 Identities = 132/256 (51%), Positives = 178/256 (69%)
 Frame = +1

Query: 412  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 176  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 235

Query: 592  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 236  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 295

Query: 772  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 296  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 355

Query: 952  QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
             +KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 356  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 415

Query: 1132 ARCTDELQRAPCKVVC 1179
            AR       A  + VC
Sbjct: 416  ARLCPNSTGAEIRSVC 431


>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
          Length = 389

 Score =  248 bits (634), Expect = 5e-66
 Identities = 127/278 (45%), Positives = 179/278 (64%)
 Frame = +1

Query: 346  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 70   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 129

Query: 526  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 130  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189

Query: 706  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 190  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249

Query: 886  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLD KI   +PNE+AR
Sbjct: 250  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309

Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
              I++IH+  +    +++YE + + +D    A  + VC
Sbjct: 310  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVC 347


>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
          Length = 806

 Score =  179 bits (454), Expect = 4e-45
 Identities = 93/224 (41%), Positives = 136/224 (60%)
 Frame = +1

Query: 508  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
            V E P   + DIGGL+   +EL E +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 688  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 868  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD  I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            P+E++R  I++ + RK  V+ DV+ E LA+ T+    A    +C
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691



 Score =  178 bits (452), Expect = 6e-45
 Identities = 114/346 (32%), Positives = 185/346 (53%), Gaps = 21/346 (6%)
 Frame = +1

Query: 205  NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
            + EKI++N+ +   L   + +++ + P    + G  I    +D   +G    +     + 
Sbjct: 78   SDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137

Query: 373  YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
            YFL          ++ GD+     G+    + ++ET P+ Y               +K  
Sbjct: 138  YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192

Query: 505  EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
            + +E   E  Y DIGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193  DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252

Query: 682  LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
            L+ARA A +T A F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  K
Sbjct: 253  LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312

Query: 862  RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
            R   EK      +R + +LL  +DG +    V V+AATNR + +DPAL R GR D +++ 
Sbjct: 313  R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369

Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
             +P+   R  I+QIH++ M ++ DV+ E++A  T     A    +C
Sbjct: 370  GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415


>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
          Length = 893

 Score =  177 bits (450), Expect = 1e-44
 Identities = 91/220 (41%), Positives = 134/220 (60%)
 Frame = +1

Query: 520  PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 699
            P   +SDIGGL+    +L +A+  P+ H + F  +GIQPPKGVL+YGPPG  KT++A+A 
Sbjct: 622  PNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKAL 681

Query: 700  AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 879
            A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELDA+  +R  S  
Sbjct: 682  ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 741

Query: 880  AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEE 1059
            AG+    R + +LL ++DG +    V V+AATNR D +D AL+R GR+D  I  P+P+  
Sbjct: 742  AGN-VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 800

Query: 1060 ARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
             R  I+ +    M +S +V+ +EL   TD    A    VC
Sbjct: 801  TRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVC 840



 Score =  148 bits (373), Expect = 9e-36
 Identities = 105/324 (32%), Positives = 169/324 (52%), Gaps = 6/324 (1%)
 Frame = +1

Query: 127  SEIKIMKSEVLRVTHELQAM--KDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEED 300
            SE   M+S  + ++ +L  +  K+    +S+      T    V+   E+L +D      D
Sbjct: 218  SEHSSMESSDVDLSFQLSQLDLKEPQSPSSQSTPCKPTNDRTVNKAGEVL-LDVTQSPRD 276

Query: 301  GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL-VGVNKDSYLILETLPT 477
            G+ + L+     KC+    S+++    PV    + + LKP       N D++  + +  T
Sbjct: 277  GSGLGLEESTGLKCSF--DSSKEGNTQPVS---EEKLLKPASAGTKSNTDTFYFISST-T 330

Query: 478  EYDSR---VKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 648
              + R     + E D +    Y  IGGL+ Q++ + E I LP+   E F++ GI  P+G+
Sbjct: 331  RINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGL 390

Query: 649  LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 828
            L+YGPPGTGKT++ARA A +  A    + GP+++  F G+    +R  FA A  + PSII
Sbjct: 391  LLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSII 450

Query: 829  FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALL 1008
            FIDELDA+  KR  ++   ++ V  ++L L++ +       +V V+ ATNR   LD AL 
Sbjct: 451  FIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALR 510

Query: 1009 RSGRLDPKIEFPMPNEEARGRIMQ 1080
            R GR D +IE  +PN + R  I+Q
Sbjct: 511  RPGRFDKEIEIGIPNAQDRLDILQ 534


>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
          Length = 892

 Score =  177 bits (450), Expect = 1e-44
 Identities = 91/220 (41%), Positives = 134/220 (60%)
 Frame = +1

Query: 520  PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 699
            P   +SDIGGL+    +L +A+  P+ H + F  +GIQPPKGVL+YGPPG  KT++A+A 
Sbjct: 621  PNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKAL 680

Query: 700  AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 879
            A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELDA+  +R  S  
Sbjct: 681  ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 740

Query: 880  AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEE 1059
            AG+    R + +LL ++DG +    V V+AATNR D +D AL+R GR+D  I  P+P+  
Sbjct: 741  AGN-VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 799

Query: 1060 ARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
             R  I+ +    M +S +V+ +EL   TD    A    VC
Sbjct: 800  TRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVC 839



 Score =  148 bits (373), Expect = 9e-36
 Identities = 105/324 (32%), Positives = 169/324 (52%), Gaps = 6/324 (1%)
 Frame = +1

Query: 127  SEIKIMKSEVLRVTHELQAM--KDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEED 300
            SE   M+S  + ++ +L  +  K+    +S+      T    V+   E+L +D      D
Sbjct: 217  SEHSSMESSDVDLSFQLSQLDLKEPQSPSSQSTPCKPTNDRTVNKAGEVL-LDVTQSPRD 275

Query: 301  GANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL-VGVNKDSYLILETLPT 477
            G+ + L+     KC+    S+++    PV    + + LKP       N D++  + +  T
Sbjct: 276  GSGLGLEESTGLKCSF--DSSKEGNTQPVS---EEKLLKPASAGTKSNTDTFYFISST-T 329

Query: 478  EYDSR---VKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGV 648
              + R     + E D +    Y  IGGL+ Q++ + E I LP+   E F++ GI  P+G+
Sbjct: 330  RINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGL 389

Query: 649  LMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSII 828
            L+YGPPGTGKT++ARA A +  A    + GP+++  F G+    +R  FA A  + PSII
Sbjct: 390  LLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSII 449

Query: 829  FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALL 1008
            FIDELDA+  KR  ++   ++ V  ++L L++ +       +V V+ ATNR   LD AL 
Sbjct: 450  FIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALR 509

Query: 1009 RSGRLDPKIEFPMPNEEARGRIMQ 1080
            R GR D +IE  +PN + R  I+Q
Sbjct: 510  RPGRFDKEIEIGIPNAQDRLDILQ 533


>ref|NP_081406.1| AFG3-like protein 2 [Mus musculus].
          Length = 802

 Score =  169 bits (427), Expect = 5e-42
 Identities = 88/220 (40%), Positives = 137/220 (62%)
 Frame = +1

Query: 478  EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 657
            E  ++V   E+D +    + D+ G ++   E++E +    N K+ +++LG + PKG ++ 
Sbjct: 292  ETTAKVLKDEIDVK----FKDVAGCEEAKLEIMEFVNFLKNPKQ-YQDLGAKIPKGAILT 346

Query: 658  GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 837
            GPPGTGKTLLA+A A +    F+ ++G + ++MF+G G   VRD FALA++ AP I+FID
Sbjct: 347  GPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFID 406

Query: 838  ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSG 1017
            E+DA+G KR      G  E + T+ +LL ++DGF   T V ++A TNR DILDPALLR G
Sbjct: 407  EIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPG 466

Query: 1018 RLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELAR 1137
            R D +I    P+ + R  I ++H R + +   +  ++LAR
Sbjct: 467  RFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLAR 506


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.315    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,467,942
Number of extensions: 1204965
Number of successful extensions: 5267
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5208
Number of HSP's successfully gapped: 41
Length of query: 394
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 291
Effective length of database: 12,523,851
Effective search space: 3644440641
Effective search space used: 3644440641
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000404
         (1182 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6...   755   0.0  
Alignment   gi|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4...   317   8e-87
Alignment   gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4...   316   1e-86
Alignment   gi|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease...   293   1e-79
Alignment   gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].      286   2e-77
Alignment   gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7...   267   7e-72
Alignment   gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7...   267   7e-72
Alignment   gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1...   248   4e-66
Alignment   gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ...   179   3e-45
Alignment   gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc...   176   2e-44

>ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa].
          Length = 439

 Score =  755 bits (1950), Expect = 0.0
 Identities = 386/394 (97%), Positives = 387/394 (98%)
 Frame = +1

Query: 1    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 180
            ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ
Sbjct: 8    ESPVTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQ 67

Query: 181  AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 360
            AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS
Sbjct: 68   AMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTS 127

Query: 361  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 540
            TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD
Sbjct: 128  TRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSD 187

Query: 541  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 720
            IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT
Sbjct: 188  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 247

Query: 721  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 900
            FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ
Sbjct: 248  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 307

Query: 901  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQ 1080
            RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD KIEFPMPNEEAR RIMQ
Sbjct: 308  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 367

Query: 1081 IHSRKMNVSPDVNYEELARCTDELQRAPCKVVCV 1182
            IHSRKMNVSPDVNYEELARCTD+   A CK VCV
Sbjct: 368  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCV 401


>ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus scrofa].
          Length = 440

 Score =  317 bits (812), Expect = 8e-87
 Identities = 156/347 (44%), Positives = 230/347 (66%)
 Frame = +1

Query: 139  IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 318
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 73   LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 120

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 121  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 172

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 173  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 232

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 233  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
            KR+DS   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+D KIE
Sbjct: 293  KRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIE 352

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP+P+E+ + RI QIH+ +M ++ DV  ++L    D+L  A  K +C
Sbjct: 353  FPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 399


>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa].
          Length = 367

 Score =  316 bits (810), Expect = 1e-86
 Identities = 156/346 (45%), Positives = 229/346 (66%)
 Frame = +1

Query: 142  MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLD 321
            M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +              
Sbjct: 1    MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------- 47

Query: 322  SQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKA 501
                   A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V  
Sbjct: 48   -------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTV 100

Query: 502  MEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
            M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKT
Sbjct: 101  MKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 160

Query: 682  LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
            LLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTK
Sbjct: 161  LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK 220

Query: 862  RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
            R+DS   G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+D KIEF
Sbjct: 221  RYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF 280

Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            P+P+E+ + RI QIH+ +M ++ DV  ++L    D+L  A  K +C
Sbjct: 281  PLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAIC 326


>ref|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
            6B-like [Sus scrofa].
          Length = 418

 Score =  293 bits (750), Expect = 1e-79
 Identities = 147/362 (40%), Positives = 224/362 (61%)
 Frame = +1

Query: 94   EEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLD 273
            E++  R + L  E++ ++ +   +  E + +K +      ++K  +++P ++   +E +D
Sbjct: 38   EDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQXEVKRIQSIPLVIGQFLEAVD 97

Query: 274  VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSY 453
             +                     A++ ++T   Y++ ++  +D E LKP   V ++K S 
Sbjct: 98   QNT--------------------AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSN 137

Query: 454  LILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQ 633
             +++ LP E DS +  +  D++P   Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI 
Sbjct: 138  ALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGID 197

Query: 634  PPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK 813
            PP+GVLMYGPPG GKT+LA+A A  T A F+++ G + VQ ++G+G ++VRD F LAKE 
Sbjct: 198  PPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 257

Query: 814  APSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDIL 993
            AP+IIFIDE+DAI TKRFD++   DREVQR +LELLNQ+DGF  N  VKVI ATNR D L
Sbjct: 258  APAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTL 317

Query: 994  DPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKV 1173
            DPALLR GRLD KIEFP+P+   +  I    + KMN+S +V+ E+     D++  A    
Sbjct: 318  DPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 377

Query: 1174 VC 1179
            +C
Sbjct: 378  IC 379


>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
          Length = 406

 Score =  286 bits (731), Expect = 2e-77
 Identities = 156/347 (44%), Positives = 217/347 (62%), Gaps = 1/347 (0%)
 Frame = +1

Query: 142  MKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANI-DL 318
            ++   L    ELQ + +   +N  +++  +     ++  + LL  +    +E G+ + ++
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEV 76

Query: 319  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 498
                  K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V 
Sbjct: 77   VRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVS 136

Query: 499  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 678
             M V++ P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGK
Sbjct: 137  LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGK 196

Query: 679  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 858
            TLLARA A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+
Sbjct: 197  TLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS 256

Query: 859  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIE 1038
             R +    GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+D KIE
Sbjct: 257  SRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIE 316

Query: 1039 FPMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            FP PNEEAR  I++IHSRKMN++  +N  ++A        A  K VC
Sbjct: 317  FPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 363


>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
          Length = 480

 Score =  267 bits (683), Expect = 7e-72
 Identities = 132/256 (51%), Positives = 178/256 (69%)
 Frame = +1

Query: 412  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 181  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 240

Query: 592  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 241  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 300

Query: 772  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 301  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 360

Query: 952  QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
             +KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 361  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 420

Query: 1132 ARCTDELQRAPCKVVC 1179
            AR       A  + VC
Sbjct: 421  ARLCPNSTGAEIRSVC 436


>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
          Length = 433

 Score =  267 bits (683), Expect = 7e-72
 Identities = 132/256 (51%), Positives = 178/256 (69%)
 Frame = +1

Query: 412  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 591
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 134  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193

Query: 592  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 771
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253

Query: 772  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 951
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 254  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

Query: 952  QVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKMNVSPDVNYEEL 1131
             +KV+ ATNR D LDPAL+R GRLD KIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 314  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373

Query: 1132 ARCTDELQRAPCKVVC 1179
            AR       A  + VC
Sbjct: 374  ARLCPNSTGAEIRSVC 389


>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
          Length = 403

 Score =  248 bits (634), Expect = 4e-66
 Identities = 127/278 (45%), Positives = 179/278 (64%)
 Frame = +1

Query: 346  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 525
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 84   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 143

Query: 526  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 705
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 144  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203

Query: 706  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 885
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 204  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263

Query: 886  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEAR 1065
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLD KI   +PNE+AR
Sbjct: 264  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323

Query: 1066 GRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
              I++IH+  +    +++YE + + +D    A  + VC
Sbjct: 324  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVC 361


>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
          Length = 806

 Score =  179 bits (453), Expect = 3e-45
 Identities = 114/346 (32%), Positives = 186/346 (53%), Gaps = 21/346 (6%)
 Frame = +1

Query: 205  NSEKIKVNKTLPY-LVSNVIELLDVDPNDQEEDGANID---LDSQRKGKCAVIKTSTRQT 372
            + EKI++N+ +   L  ++ +++ + P    + G  I    +D   +G    +     + 
Sbjct: 78   SDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKP 137

Query: 373  YFLPVIGLVDAEKLKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAM 504
            YFL          ++ GD+     G+    + ++ET P+ Y               +K  
Sbjct: 138  YFLEAY-----RPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKRE 192

Query: 505  EVDERPTEQ-YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKT 681
            + +E   E  Y DIGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKT
Sbjct: 193  DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKT 252

Query: 682  LLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTK 861
            L+ARA A +T A F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  K
Sbjct: 253  LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312

Query: 862  RFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEF 1041
            R   EK      +R + +LL  +DG +    V V+AATNR + +DPAL R GR D +++ 
Sbjct: 313  R---EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDI 369

Query: 1042 PMPNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
             +P+   R  I+QIH++ M ++ DV+ E++A  T     A    +C
Sbjct: 370  GIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415



 Score =  178 bits (451), Expect = 6e-45
 Identities = 92/224 (41%), Positives = 136/224 (60%)
 Frame = +1

Query: 508  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 687
            V E P   + DIGGL+   +EL + +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 688  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 867
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 868  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPM 1047
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD  I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 1048 PNEEARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
            P+E++R  I++ + RK  V+ DV+ E LA+ T+    A    +C
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691


>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
          Length = 887

 Score =  176 bits (446), Expect = 2e-44
 Identities = 91/220 (41%), Positives = 131/220 (59%)
 Frame = +1

Query: 520  PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 699
            P   +SDIGGL+    +L +A+  P+ H E F  +GIQPPKGVL+YGPPG  KT++A+A 
Sbjct: 616  PNVSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKAL 675

Query: 700  AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 879
            A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELDA+  +R  S  
Sbjct: 676  ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 735

Query: 880  AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEE 1059
            AG+    R + +LL  +DG +    V ++AATNR D +D AL+R GR+D  I  P+P+  
Sbjct: 736  AGN-VADRVLAQLLTXMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 794

Query: 1060 ARGRIMQIHSRKMNVSPDVNYEELARCTDELQRAPCKVVC 1179
             R  I  +    M +S +V+  EL   TD    A    VC
Sbjct: 795  TRREIFNLQFHSMPISKEVDLNELVLQTDTYSGAEIIAVC 834



 Score =  154 bits (389), Expect = 9e-38
 Identities = 95/266 (35%), Positives = 148/266 (55%), Gaps = 5/266 (1%)
 Frame = +1

Query: 397  VDAEKLKPGDLVGV--NKDSYLILETLPTEYDSRV--KAMEVDERPTEQYSDIGGLDKQI 564
            ++ E+L     VG   N D++  + +      ++V  K+ + D +    Y  IGGL+ Q+
Sbjct: 297  INEERLLKSPSVGAKCNTDTFYFISSTTRVNFTKVCTKSKDQDNQLKVTYDMIGGLNSQL 356

Query: 565  QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 744
            +E+ E I LP+   E F++ GI PP+GVL+YGPPGTGKT++ARA A +  A    + GP+
Sbjct: 357  KEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPE 416

Query: 745  LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 924
            ++  F G+    +R  FA A  + PSIIFIDELDA+  KR  ++   ++ V  ++L L++
Sbjct: 417  IISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMD 476

Query: 925  QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDPKIEFPMPNEEARGRIMQIHSRKM-N 1101
             +       QV V+ ATNR   LD AL R GR D +IE  +PN + R  I+Q   R++ +
Sbjct: 477  GIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPH 536

Query: 1102 VSPDVNYEELARCTDELQRAPCKVVC 1179
            +  +    +LA        A  K +C
Sbjct: 537  LLTEAELLQLANSAHGYVGADLKALC 562


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.315    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,063,365
Number of extensions: 937441
Number of successful extensions: 4292
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 4228
Number of HSP's successfully gapped: 37
Length of query: 394
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,829,335
Effective search space: 2586995155
Effective search space used: 2586995155
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000404
         (1182 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         299   2e-78

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                            
Query: 713      aggccaccttcctgaagttggcgggcccccagctggtgcagatgttcattggggatggtg 772
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395235 aggccaccttcctgaagttggcgggcccccagctggtgcagatgttcattggggatggtg 16395294

                                                                            
Query: 773      ccaagctggtccgggacgcctttgctctggccaaggagaaagcgccgtctatcatcttca 832
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395295 ccaagctggtccgggacgcctttgctctggccaaggagaaagcgccgtctatcatcttca 16395354

                                               
Query: 833      ttgatgagctggatgccattggtaccaagcg 863
                |||||||||||||||||||||||||||||||
Sbjct: 16395355 ttgatgagctggatgccattggtaccaagcg 16395385



 Score =  291 bits (147), Expect = 4e-76
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                            
Query: 569      agctggtggaggccattgtcctgccaatgaaccacaaggagaagtttgagaacttgggga 628
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394963 agctggtggaggccattgtcctgccaatgaaccacaaggagaagtttgagaacttgggga 16395022

                                                                            
Query: 629      tccagcctccaaagggggtgctgatgtacgggcccccaggtacagggaagaccttgctgg 688
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395023 tccagcctccaaagggggtgctgatgtacgggcccccaggtacagggaagaccttgctgg 16395082

                                           
Query: 689      cccgggcctgtgctgcacagaccaagg 715
                |||||||||||||||||||||||||||
Sbjct: 16395083 cccgggcctgtgctgcacagaccaagg 16395109



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                            
Query: 432      gggtgtgaacaaagactcctacctgatcctggagaccctgcccacagagtatgactcgag 491
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394387 gggtgtgaacaaagactcctacctgatcctggagaccctgcccacagagtatgactcgag 16394446

                                                                            
Query: 492      ggtgaaggccatggaggtggacgagaggcccacagagcaatacagtgacatcgggggcct 551
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394447 ggtgaaggccatggaggtggacgagaggcccacagagcaatacagtgacatcgggggcct 16394506

                                   
Query: 552      ggacaagcagattcaggag 570
                |||||||||||||||||||
Sbjct: 16394507 ggacaagcagattcaggag 16394525



 Score =  270 bits (136), Expect = 2e-69
 Identities = 145/148 (97%)
 Strand = Plus / Plus

                                                                            
Query: 959      aggtgattgcagccactaacagggtggacatcctggaccctgcccttctccgctcaggcc 1018
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396424 aggtgattgcagccactaacagggtggacatcctggaccctgcccttctccgctcaggcc 16396483

                                                                            
Query: 1019     gcctggaccccaagattgagttcccgatgcccaacgaggaggcccggggcagaatcatgc 1078
                ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 16396484 gcctggaccgcaagattgagttcccgatgcccaacgaggaggcccgggccagaatcatgc 16396543

                                            
Query: 1079     aaatccactcccgaaagatgaacgtcag 1106
                | ||||||||||||||||||||||||||
Sbjct: 16396544 agatccactcccgaaagatgaacgtcag 16396571



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                            
Query: 137      agatcatgaagagtgaagtgttacgagtcacccacgaactccaagccatgaaggacaaga 196
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393299 agatcatgaagagtgaagtgttacgagtcacccacgaactccaagccatgaaggacaaga 16393358

                                                                            
Query: 197      tcaaagagaacagtgagaaaatcaaagtgaataagaccctgccgtacctggtctccaacg 256
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393359 tcaaagagaacagtgagaaaatcaaagtgaataagaccctgccgtacctggtctccaacg 16393418

                        
Query: 257      tcatcgag 264
                ||||||||
Sbjct: 16393419 tcatcgag 16393426



 Score =  212 bits (107), Expect = 3e-52
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                            
Query: 263      agcttctggacgttgatcccaatgaccaagaggaagatggtgccaatattgacctggatt 322
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393860 agcttctggacgttgatcccaatgaccaagaggaagatggtgccaatattgacctggatt 16393919

                                                               
Query: 323      cccagaggaagggcaagtgtgcagtgatcaaaacctctacacgacag 369
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393920 cccagaggaagggcaagtgtgcagtgatcaaaacctctacacgacag 16393966



 Score =  194 bits (98), Expect = 8e-47
 Identities = 101/102 (99%)
 Strand = Plus / Plus

                                                                            
Query: 863      gctttgacagcgagaaggccggagaccgggaggtgcaaaggacgatgctggagcttctga 922
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 16396103 gctttgacagcgagaaggccggagaccgggaggtgcagaggacgatgctggagcttctga 16396162

                                                          
Query: 923      accagctggatggattccagcccaacacccaagtgaaggtga 964
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396163 accagctggatggattccagcccaacacccaagtgaaggtga 16396204



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                            
Query: 53       agcaagatggaatcggggaggaagtactcaagatgtccacagaagagatcgtgcagcgca 112
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16392643 agcaagatggaatcggggaggaagtactcaagatgtccacagaagagatcgtgcagcgca 16392702

                                          
Query: 113      cacggctgctggacagtgaaatcaag 138
                ||||||||||||||||||||||||||
Sbjct: 16392703 cacggctgctggacagtgaaatcaag 16392728



 Score =  135 bits (68), Expect = 6e-29
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                            
Query: 366      acagacatactttctacctgtgattgggttggtggatgctgaaaagctgaagccaggaga 425
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394063 acagacatactttctacctgtgattgggttggtggatgctgaaaagctgaagccaggaga 16394122

                        
Query: 426      cttggtgg 433
                ||||||||
Sbjct: 16394123 cttggtgg 16394130



 Score =  107 bits (54), Expect = 1e-20
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1        gagagtccagtgactcggcaggagaagatggcgacggtgtgggatgaggctgag 54
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16392358 gagagtccagtgactcggcaggagaagatggcgacggtgtgggatgaggctgag 16392411



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                            
Query: 1104     cagtcccgacgtgaactacgaggaactggcccgctgtacagatgaactccagcgggcccc 1163
                |||||||||||||||||||||||| ||||||||||||||||||||  || |  |||||| 
Sbjct: 16397411 cagtcccgacgtgaactacgaggagctggcccgctgtacagatgacttcaacggggccca 16397470

                                   
Query: 1164     gtgcaaggttgtgtgtgtg 1182
                |||||||| ||||||||||
Sbjct: 16397471 gtgcaaggctgtgtgtgtg 16397489


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,559,192
Number of extensions: 204
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 11
Length of query: 1182
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1161
Effective length of database: 2,808,413,156
Effective search space: 3260567674116
Effective search space used: 3260567674116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)