Animal-Genome cDNA 20110601C-000415


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000415
         (1088 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru...   474   e-134
Alignment   gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].                   468   e-132
Alignment   gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru...   463   e-130
Alignment   gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru...   462   e-130
Alignment   gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ...   458   e-129
Alignment   gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp...   457   e-129
Alignment   gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur...   457   e-129
Alignment   gi|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].     457   e-129
Alignment   gi|NP_001035644.1| major histocompatibility complex, class I, A...   455   e-128
Alignment   gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].      454   e-128

>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
          Length = 361

 Score =  474 bits (1220), Expect = e-134
 Identities = 232/320 (72%), Positives = 253/320 (79%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YFYT VSRP  G+ RFIAVGYVDDTQFVRFD+ A +PR EPRVPW++QEG +YWD 
Sbjct: 27   HSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYWDR 86

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ETR +KD AQT+ V LNTL GYYNQSEAGSHTLQ M+GC + PDG  L GYRQDAYDG D
Sbjct: 87   ETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDGRD 146

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALN+DLRSWTAAD AAQI+KRKWEAA  AE  R+YL+G CVE LRRYLE GKDTL RA
Sbjct: 147  YIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLLRA 206

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HVTRHPSSD  VTLRCWALGFYP+EISLTWQ  G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207  DPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 266

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P  P                     AG
Sbjct: 267  KWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEP--PQTSFLTMGIIVGLVVLVVAVVAG 324

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW+K  SGEKG  YTQAA
Sbjct: 325  AVIWRKKHSGEKGRIYTQAA 344


>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
          Length = 359

 Score =  468 bits (1203), Expect = e-132
 Identities = 228/320 (71%), Positives = 251/320 (78%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YFYTAVSRP  G+ RFI VGYVDDTQFVRFD+ A +PR+EPR  W++QEG +YWD+
Sbjct: 24   HSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYWDQ 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ETRK KD+AQ + +GLNTLRGYYNQSEAGSHTLQ M+GC +GPDG LL G+ Q  Y+G D
Sbjct: 84   ETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEGRD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAAD AAQISKRKWEAAD AE  R+YL+G CVE L RYLE GKDTL RA
Sbjct: 144  YIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLLRA 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HVT HP S   VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204  DPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KW ALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q                      AG
Sbjct: 264  KWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ-TSFLTMGIIVGLVLLVTGAVVAG 322

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW K  SGEKGGNY QA+
Sbjct: 323  FVIWMKKRSGEKGGNYIQAS 342


>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
          Length = 363

 Score =  463 bits (1192), Expect = e-130
 Identities = 227/346 (65%), Positives = 252/346 (72%)
 Frame = +2

Query: 47   LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
            +R+MGP                    HSL YFYTAVSRP  G+ RFI+VGYVDDTQFVRF
Sbjct: 1    MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 227  DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
            D+ APNPRMEPR  W++QEG +YWD ETR  KD AQ + V LNTLRGYYNQSEAGSHTLQ
Sbjct: 61   DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120

Query: 407  SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
             M+GCY+GPDG L  G+ Q  YDG DY+ALNEDLRSWTA +  AQISKRK EAA  AE  
Sbjct: 121  LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180

Query: 587  RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
            R+YL+G CVE LRRYLE GKDTL RA+PPK HVTRHP S   VTLRCWALGFYP+EISLT
Sbjct: 181  RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240

Query: 767  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
            WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241  WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300

Query: 947  AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
             QP                     AG+VI  K  SGEK G Y QA+
Sbjct: 301  PQPSFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQAS 346


>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
          Length = 358

 Score =  462 bits (1190), Expect = e-130
 Identities = 229/320 (71%), Positives = 249/320 (77%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YF TAVSRP  G+ RFIAVGYVDDTQF RFD+ APNPR EPRVPW++QEG +YWD 
Sbjct: 24   HSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYWDR 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
             TR  KD AQT+ V LN LRGYYNQSEAGSHTLQ M GC +GPDG LL G+ Q  YDG +
Sbjct: 84   NTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDGRN 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAAD AAQI+KRKWEAA AAE  R+Y++G CVE LRRYLE GKD L RA
Sbjct: 144  YIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALLRA 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HVT HP S+  VTLRCWALGFYP+EISLTWQREG+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204  DPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P  P                     AG
Sbjct: 264  KWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP--PQTSFLTMGIIVGLVLLVVAVVAG 321

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW+K  SGEKG  YTQAA
Sbjct: 322  AVIWRKKRSGEKGRIYTQAA 341


>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
          Length = 398

 Score =  458 bits (1179), Expect = e-129
 Identities = 225/320 (70%), Positives = 245/320 (76%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YFYTAVSRP  G+ RFI VGYVDDT+FVRFD+ AP+PRMEPR  W++QEG +YWD+
Sbjct: 52   HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ETRK KD AQT+   LN+LRGYYNQSEAGSHTLQ M+GC +GPDG LL GY Q  YDG D
Sbjct: 112  ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAAD AAQISKRK EAA  A   R YL G CVESLRRYLE GK+TL RA
Sbjct: 172  YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HVT HP S   VTLRCWALGFYP+EI LTWQ  G+DQ+QDMELVETRP GDG FQ
Sbjct: 232  DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P  P                     AG
Sbjct: 292  KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP--PQTPFLTMGIIVGLVLLVVAVVAG 349

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW+K  SGEKG  YTQA+
Sbjct: 350  AVIWRKKRSGEKGRTYTQAS 369


>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
            [Bos taurus].
          Length = 360

 Score =  457 bits (1176), Expect = e-129
 Identities = 220/319 (68%), Positives = 245/319 (76%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HS+ YF TAVSRP  G+ R++ VGYVDDTQFVRFD+ A NPRMEPR  W++QEG +YWD 
Sbjct: 24   HSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQEGPEYWDR 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
             TR  K NAQ++ VGLNTLRGYYNQSEAGSHTLQ M GCY+GPDG LL G+ Q  YDG D
Sbjct: 84   NTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQYGYDGRD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            Y+ALNEDLRSWTAAD  AQI+KRKWEA   AE  R+YL+G CVE LRR++E GKDTL RA
Sbjct: 144  YLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENGKDTLLRA 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HVT HP SD  VTLRCWALGFYP+EISLTWQ  G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204  DPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAALVVP GEEQ YTC VQHEGLQEPLTL+W+P QP                     AG
Sbjct: 264  KWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQPSFLTMGIIVGLVLLVVTGAVVAG 323

Query: 1025 IVIWKKTPSGEKGGNYTQA 1081
            +VI  K PSGEK G Y QA
Sbjct: 324  VVICMKKPSGEKRGTYIQA 342


>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
          Length = 437

 Score =  457 bits (1176), Expect = e-129
 Identities = 223/352 (63%), Positives = 253/352 (71%)
 Frame = +2

Query: 29   SPQTPRLRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDD 208
            SPQT R+R+MGP                    HSLSYF T VSRP  G+ RF AVGYVDD
Sbjct: 69   SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128

Query: 209  TQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEA 388
            TQF RFD+ APNPRMEPR PW++QEG +YW+  TR  K   Q    GLNTLRG+YNQSEA
Sbjct: 129  TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188

Query: 389  GSHTLQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAA 568
            GSHTLQ +FGC +GP+G LL G  Q+AYDGADY+ALNEDLRSWTAA+  AQI+KRKWE +
Sbjct: 189  GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248

Query: 569  DAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 748
              AE  R+YL+  CV+ L R+LE GKDTL RA+PPKTHV  HP SD  VTLRCWALGFYP
Sbjct: 249  GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308

Query: 749  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 928
            +EISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309  EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368

Query: 929  TLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
            +LRW P QP                      G VIW+   SG+ G  YTQAA
Sbjct: 369  SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAA 420


>ref|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].
          Length = 437

 Score =  457 bits (1176), Expect = e-129
 Identities = 223/352 (63%), Positives = 253/352 (71%)
 Frame = +2

Query: 29   SPQTPRLRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDD 208
            SPQT R+R+MGP                    HSLSYF T VSRP  G+ RF AVGYVDD
Sbjct: 69   SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128

Query: 209  TQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEA 388
            TQF RFD+ APNPRMEPR PW++QEG +YW+  TR  K   Q    GLNTLRG+YNQSEA
Sbjct: 129  TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188

Query: 389  GSHTLQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAA 568
            GSHTLQ +FGC +GP+G LL G  Q+AYDGADY+ALNEDLRSWTAA+  AQI+KRKWE +
Sbjct: 189  GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248

Query: 569  DAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 748
              AE  R+YL+  CV+ L R+LE GKDTL RA+PPKTHV  HP SD  VTLRCWALGFYP
Sbjct: 249  GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308

Query: 749  KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 928
            +EISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309  EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368

Query: 929  TLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
            +LRW P QP                      G VIW+   SG+ G  YTQAA
Sbjct: 369  SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAA 420


>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 362

 Score =  455 bits (1171), Expect = e-128
 Identities = 224/346 (64%), Positives = 252/346 (72%)
 Frame = +2

Query: 47   LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
            +R++GP                    HSL YFYTAVSRP  G+ RFI+VGYVDDTQFVRF
Sbjct: 1    MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 227  DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
            D+ AP+PR+EP   W++QEG +YW +ET++ KD AQ + V LNTLRGYYNQSEAGSHT+Q
Sbjct: 61   DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120

Query: 407  SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
             M+GC +GPDGLL  GY Q AYDG DYIALNEDLRSWTAAD AAQ++K   EAA  A   
Sbjct: 121  EMYGCDVGPDGLL-RGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179

Query: 587  RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
            R YL+G CVE LRRYL  GKDTL RA+PPKTHV  HP SD  VTLRCWALGFYP EISLT
Sbjct: 180  RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239

Query: 767  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
            WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240  WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299

Query: 947  AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
             QP                      G +IW+K  SGEKG  YTQ A
Sbjct: 300  PQPSIPIMGIIVGLVLLMVTGAVVTGAMIWRKKHSGEKGRGYTQTA 345


>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
          Length = 361

 Score =  454 bits (1167), Expect = e-128
 Identities = 225/346 (65%), Positives = 250/346 (72%)
 Frame = +2

Query: 47   LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
            +R+MGP                    HS+ YF TAVSRP  G+ +++ VGYVDDTQFVRF
Sbjct: 1    MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60

Query: 227  DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
            D+ APNPRMEPR  W++QEG +YWDEET++ K   Q + V LNTLRGYYNQSEAGSHTLQ
Sbjct: 61   DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120

Query: 407  SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
             M GC +GPDG L  G+ Q  YDG DY+ALNEDLRSWTAAD  AQISKRK EAA AAE  
Sbjct: 121  WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180

Query: 587  RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
            R Y++G CVE LRRYLE GKDTL RA+PPK HVT HP SD  VTLRCWALGFYPKEISLT
Sbjct: 181  RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240

Query: 767  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
            WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241  WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300

Query: 947  AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
              P                     AG VIW+K  SGEKG  YTQA+
Sbjct: 301  --PQTPFLTVGIIVGLVLLVVAVVAGAVIWRKKCSGEKGRTYTQAS 344


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,396,800
Number of extensions: 1126932
Number of successful extensions: 6903
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 6746
Number of HSP's successfully gapped: 73
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000415
         (1088 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].      456   e-128
Alignment   gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].      446   e-125
Alignment   gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].      413   e-115
Alignment   gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].          361   e-100
Alignment   gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris].            361   e-100
Alignment   gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein...   195   7e-50
Alignment   gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s...   134   2e-31
Alignment   gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati...    69   1e-11
Alignment   gi|XP_545727.2| PREDICTED: similar to T-cell surface glycoprote...    68   2e-11
Alignment   gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote...    67   3e-11

>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
          Length = 361

 Score =  456 bits (1174), Expect = e-128
 Identities = 221/320 (69%), Positives = 249/320 (77%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YFYT+VSRP RGD RFIAVGYVDDTQFVRFD+ A   RMEPR PW++QEG +YWD 
Sbjct: 27   HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDR 86

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ETR VK+ AQ Y V L+TLRGYYNQSEAGSHT Q+M+GC LGP G LL GY QDAYDGAD
Sbjct: 87   ETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGAD 146

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAAD AAQI++RKWEAA  AEH R+YL+  CVE LRRYLEMGK+TL RA
Sbjct: 147  YIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRA 206

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            EPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207  EPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+                        G
Sbjct: 267  KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS--PLSTIVIVSIAALVLLVVSGVIG 324

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW+K  SG KG  Y+ AA
Sbjct: 325  AVIWRKQRSGGKGPGYSHAA 344


>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
          Length = 358

 Score =  446 bits (1148), Expect = e-125
 Identities = 217/320 (67%), Positives = 247/320 (77%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YFYT+VSRP RGD RFIAVGYVDDTQFVRFD+ A   RMEPR PW++QEG +YWD 
Sbjct: 24   HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYWDP 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            +TR +K+ A+T+ V L+TLRGYYNQSEAGSHT Q MFGC LGP G LL GY QDAYDGAD
Sbjct: 84   QTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDGAD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAAD AAQI++RK EAA  A H R+YL+  CVE LRRYLEMGK+TL RA
Sbjct: 144  YIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLLRA 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            EPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 204  EPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+                        G
Sbjct: 264  KWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEPS--PLSTIVIVSIAALVLLVVAGVIG 321

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW+K  SG KG  Y+ AA
Sbjct: 322  AVIWRKQRSGGKGPGYSHAA 341


>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
          Length = 361

 Score =  413 bits (1061), Expect = e-115
 Identities = 197/320 (61%), Positives = 242/320 (75%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL +F+TAVSRP RGD  +I+VGYVDDTQF+RF++ A +P++EPR  W++QEG ++W+E
Sbjct: 27   HSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEE 86

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            +T   K +AQT    L T  GYYNQSEAGSHT Q   GC +GPDG LL GY Q AYDGAD
Sbjct: 87   QTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGAD 146

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            Y+AL+EDLRSWTAAD AAQI++RKWEAA AA+++R YLQG CV+SL +YLE GK+TLQ  
Sbjct: 147  YLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLT 206

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK ++TRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207  DPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+                        G
Sbjct: 267  KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS--PLSTIVIVSIAALVLLVVAGVIG 324

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW+K  SG KG  Y+ AA
Sbjct: 325  AVIWRKQRSGGKGPGYSHAA 344


>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
          Length = 381

 Score =  361 bits (926), Expect = e-100
 Identities = 175/321 (54%), Positives = 221/321 (68%), Gaps = 2/321 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL +  T VSRP  G+ R  AV YVDDT F RF++     R EP V W++QEG +YW+E
Sbjct: 32   HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91

Query: 305  ETRKVKDNAQTYGVGLNTL-RGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
             T   +   Q     LN + + Y NQS  GSHT Q++ GC +GPDG  L GY++ AYDG 
Sbjct: 92   RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYI L+EDLRSW   D  AQI++RKW+AA  AE+ +++L+G C+E LRR+LE G++TLQR
Sbjct: 152  DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            A+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212  ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPXXXXXXXXXXXXXXXXXXXXX 1018
            QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q                      
Sbjct: 272  QKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331

Query: 1019 AGIVIWKKTPSGEKGGNYTQA 1081
             G+VIW+K  SG KGG+Y+QA
Sbjct: 332  VGVVIWRKKHSGRKGGSYSQA 352


>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
          Length = 381

 Score =  361 bits (926), Expect = e-100
 Identities = 175/321 (54%), Positives = 221/321 (68%), Gaps = 2/321 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL +  T VSRP  G+ R  AV YVDDT F RF++     R EP V W++QEG +YW+E
Sbjct: 32   HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91

Query: 305  ETRKVKDNAQTYGVGLNTL-RGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
             T   +   Q     LN + + Y NQS  GSHT Q++ GC +GPDG  L GY++ AYDG 
Sbjct: 92   RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYI L+EDLRSW   D  AQI++RKW+AA  AE+ +++L+G C+E LRR+LE G++TLQR
Sbjct: 152  DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            A+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212  ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPXXXXXXXXXXXXXXXXXXXXX 1018
            QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q                      
Sbjct: 272  QKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331

Query: 1019 AGIVIWKKTPSGEKGGNYTQA 1081
             G+VIW+K  SG KGG+Y+QA
Sbjct: 332  VGVVIWRKKHSGRKGGSYSQA 352


>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
           (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
           familiaris].
          Length = 315

 Score =  195 bits (495), Expect = 7e-50
 Identities = 106/280 (37%), Positives = 153/280 (54%), Gaps = 3/280 (1%)
 Frame = +2

Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
           P+SLS+FYT +SRP  G   F A  Y++D  F  +D+     +  PR PW Q EG + W+
Sbjct: 27  PYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDS--ETGKAIPRYPWSQMEGIEDWE 84

Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
           +E++  K     + V L  +  YY   E GSHT Q MFGC L  +      + + AYDG 
Sbjct: 85  KESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRYAYDGR 142

Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADA-AEHWRSYLQGLCVESLRRYLEMGKDTLQ 658
           ++I  N+++ +W   D AA  +K+KWEA +   +  ++YL+  C   L+RYLE GK  L 
Sbjct: 143 NFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYLD 202

Query: 659 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 838
           R EPP   +T H + +   TL+CW  GFYP+EI L W  +  D  +        PSG+ T
Sbjct: 203 RQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSGNNT 261

Query: 839 FQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPAQ 952
           +Q W  +   P +    SY+C V+H  L +PLT+ WD  Q
Sbjct: 262 YQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301


>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
           (FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
           transporter, alpha chain) [Canis familiaris].
          Length = 354

 Score =  134 bits (336), Expect = 2e-31
 Identities = 86/271 (31%), Positives = 131/271 (48%), Gaps = 2/271 (0%)
 Frame = +2

Query: 128 SLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWI-QQEGQDYWDE 304
           SL Y  TAVS P  G   F A G++   Q++ ++N     + EP   W+ + +   YW++
Sbjct: 28  SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNNL--RAQAEPYGAWVWENQVSWYWEK 85

Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
           ET  ++     +   L  L       + G +TLQ + GC LGPD   +    + A +G D
Sbjct: 86  ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138

Query: 485 YIALNEDLRSWTAADMAAQ-ISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
           ++  +  L +W       + +SKR  + A A    R++L   C + L  +LE G+  L+ 
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198

Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            EPP   +   P S     L C A  FYP E+ L + R G          +  P+GDG+F
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256

Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 934
             W++L V  G+E  Y C VQH GL +PLT+
Sbjct: 257 HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTV 287


>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
           beta chain precursor (MHC class II antigen DMB) [Canis
           familiaris].
          Length = 263

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
 Frame = +2

Query: 659 RAEPPKTHVTRHP--SSDLGVTLRCWALGFYPKEISLTWQREGQD-QSQDMELVETRPSG 829
           R  PP   V +    ++   V L C+  GFYP +++++W++ GQ   S    L   +P+G
Sbjct: 111 RTRPPTVQVAKSTPFNTKESVMLACYVWGFYPADVTISWRKNGQPVPSHSSALNMAQPNG 170

Query: 830 DGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
           D T+Q  + L   P  E +YTC V+H G  EP+   W P
Sbjct: 171 DWTYQTVSHLATTPSYEDTYTCVVEHIGAPEPVCEDWTP 209


>ref|XP_545727.2| PREDICTED: similar to T-cell surface glycoprotein CD1e precursor
           (CD1e antigen) (R2G1) [Canis familiaris].
          Length = 300

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
 Frame = +2

Query: 401 LQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAA---- 568
           LQ   GC L   G     +   AY G+D+++   +  SW  +  A   +++  E      
Sbjct: 109 LQMSAGCRLHT-GKASESFLNGAYQGSDFLSFQGN--SWYPSPGAGSRARKVCEMLNRYQ 165

Query: 569 DAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 745
           D  E  +S +  +C + L   LE GK  L R   P+  ++  PS   G + L C   GF+
Sbjct: 166 DIKEIVKSLIGYICPQFLAGILEAGKAELGRQVRPEAWLSADPSPGPGRLRLVCHVSGFH 225

Query: 746 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 922
           PK + +TW R G+ + +     +  P  DGT+   A L V   E    +C V+H  L  +
Sbjct: 226 PKPVRVTWMR-GEQEQRGTRRGDFLPHADGTWYLRATLDVAAREAAGLSCRVKHSSLGGQ 284

Query: 923 PLTLRWD 943
            + L W+
Sbjct: 285 DMVLHWE 291


>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
           (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
           thymocyte antigen) isoform 1 [Canis familiaris].
          Length = 357

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 68/259 (26%), Positives = 105/259 (40%), Gaps = 10/259 (3%)
 Frame = +2

Query: 197 YVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYN 376
           ++DD Q   +DN   N     R PW Q    D  +EE  +      +  +  N +  Y++
Sbjct: 49  WLDDVQIHAWDN--KNRTFVFRWPWAQG---DLSNEERMEADQLFYSNYIFYNLV--YHD 101

Query: 377 QSEAGS----HTLQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAA----DM 532
                       +Q   GC L   G    G+ + AY G D I       SW  +      
Sbjct: 102 HVSQWQLEYPFQVQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSR 158

Query: 533 AAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLG 712
           A Q S    +  +  E     + G C   +   L++GK  LQR   P+  ++  PS   G
Sbjct: 159 AQQASSVFNQYHEDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPG 218

Query: 713 -VTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSY 889
            + L C   GFYPK + + W R G+ + Q  +  +  P  DGT+    +L V   E    
Sbjct: 219 RLQLVCHVSGFYPKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGL 277

Query: 890 TCHVQHEGL-QEPLTLRWD 943
           +C V+H  L  + + L W+
Sbjct: 278 SCRVRHSSLGGQDMVLHWE 296


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,194,954
Number of extensions: 1171455
Number of successful extensions: 7256
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 7016
Number of HSP's successfully gapped: 26
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000415
         (1088 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp...   454   e-128
Alignment   gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ...   451   e-127
Alignment   gi|NP_005505.2| major histocompatibility complex, class I, B pr...   436   e-122
Alignment   gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1...   436   e-122
Alignment   gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al...   436   e-122
Alignment   gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c...   430   e-120
Alignment   gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c...   421   e-118
Alignment   gi|NP_001091949.1| HLA class I histocompatibility antigen, alph...   409   e-114
Alignment   gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c...   409   e-114
Alignment   gi|NP_001091948.1| HLA class I histocompatibility antigen, alph...   243   2e-64

>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  454 bits (1167), Expect = e-128
 Identities = 218/322 (67%), Positives = 250/322 (77%), Gaps = 2/322 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HS+ YF+T+VSRP RG+ RFIAVGYVDDTQFVRFD+ A + RMEPR PWI+QEG +YWD+
Sbjct: 27   HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQ 86

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ETR VK  +QT  V L TLRGYYNQSEAGSHT+Q M+GC +G DG  L GYRQDAYDG D
Sbjct: 87   ETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKD 146

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAADMAAQI+KRKWEAA  AE  R+YL G CVE LRRYLE GK+TLQR 
Sbjct: 147  YIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRT 206

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPKTH+T HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207  DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ +                       A 
Sbjct: 267  KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAV 326

Query: 1025 I--VIWKKTPSGEKGGNYTQAA 1084
            +  V+W++  S  KGG+YTQAA
Sbjct: 327  VAAVMWRRKSSDRKGGSYTQAA 348


>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  451 bits (1159), Expect = e-127
 Identities = 214/322 (66%), Positives = 250/322 (77%), Gaps = 2/322 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HS+ YF+T+VSRP RG+ RFIAVGYVDDTQFVRFD+ A + +MEPR PWI+QEG +YWD+
Sbjct: 27   HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQ 86

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ETR +K ++QT    L TLRGYYNQSE GSHT+Q M+GC +GPDG  L GYRQDAYDG D
Sbjct: 87   ETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKD 146

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAADMAAQI+KRKWEA  AAE  R YL+G CV+ LRRYLE GK+TLQR 
Sbjct: 147  YIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRT 206

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPKTH+T HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207  DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ +                       A 
Sbjct: 267  KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAV 326

Query: 1025 I--VIWKKTPSGEKGGNYTQAA 1084
            +  V+W++  S  KGG+YTQAA
Sbjct: 327  VAAVMWRRKSSDRKGGSYTQAA 348


>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
            sapiens].
          Length = 362

 Score =  436 bits (1122), Expect = e-122
 Identities = 213/322 (66%), Positives = 246/322 (76%), Gaps = 2/322 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HS+ YFYT+VSRP RG+ RFI+VGYVDDTQFVRFD+ A +PR EPR PWI+QEG +YWD 
Sbjct: 27   HSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDR 86

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
             T+  K  AQT    L  LRGYYNQSEAGSHTLQSM+GC +GPDG LL G+ Q AYDG D
Sbjct: 87   NTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKD 146

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDLRSWTAAD AAQI++RKWEAA  AE  R+YL+G CVE LRRYLE GKD L+RA
Sbjct: 147  YIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERA 206

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPKTHVT HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GD TFQ
Sbjct: 207  DPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQ 266

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P+                       A 
Sbjct: 267  KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAV 326

Query: 1025 I--VIWKKTPSGEKGGNYTQAA 1084
            +  V+ ++  SG KGG+Y+QAA
Sbjct: 327  VAAVMCRRKSSGGKGGSYSQAA 348


>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  436 bits (1122), Expect = e-122
 Identities = 218/349 (62%), Positives = 252/349 (72%), Gaps = 3/349 (0%)
 Frame = +2

Query: 47   LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
            +R+M P                    HS+ YF TAVSRP RG+ RFI+VGYVDDTQFVRF
Sbjct: 1    MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60

Query: 227  DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
            D+ A +PR EPR PW++QEG +YWD ET+  K  AQ   V L  LRGYYNQSE GSHTLQ
Sbjct: 61   DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120

Query: 407  SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
             M+GC LGPDG LL GY Q AYDG DYIALNEDLRSWTAAD AAQI++RK EAA AAE  
Sbjct: 121  RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180

Query: 587  RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
            R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD   TLRCWALGFYP EI+LT
Sbjct: 181  RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240

Query: 767  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
            WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241  WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300

Query: 947  -AQPXXXXXXXXXXXXXXXXXXXXXAGI--VIWKKTPSGEKGGNYTQAA 1084
             +QP                     A +  ++ ++  SG KGG+ +QAA
Sbjct: 301  SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAA 349


>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  436 bits (1122), Expect = e-122
 Identities = 219/349 (62%), Positives = 252/349 (72%), Gaps = 3/349 (0%)
 Frame = +2

Query: 47   LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
            +R+M P                    HS+ YF TAVSRP RG+ RFI+VGYVDDTQFVRF
Sbjct: 1    MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60

Query: 227  DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
            D+ A +PR EPR PW++QEG +YWD ET+K K  AQ   V L  LRGYYNQSE GSHTLQ
Sbjct: 61   DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120

Query: 407  SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
             M GC LGPDG LL GY Q AYDG DYIALNEDLRSWTAAD AAQI++RK EAA AAE  
Sbjct: 121  RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180

Query: 587  RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
            R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD   TLRCWALGFYP EI+LT
Sbjct: 181  RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240

Query: 767  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
            WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241  WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300

Query: 947  -AQPXXXXXXXXXXXXXXXXXXXXXAGI--VIWKKTPSGEKGGNYTQAA 1084
             +QP                     A +  ++ ++  SG KGG+ +QAA
Sbjct: 301  SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAA 349


>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
            sapiens].
          Length = 358

 Score =  430 bits (1106), Expect = e-120
 Identities = 207/321 (64%), Positives = 237/321 (73%), Gaps = 2/321 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YF+T+VSRP RG+ RFI+VGYVDDTQFVRFDN A +PRM PR PW++QEG +YWD 
Sbjct: 24   HSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDR 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ETR  +D AQ + V L TLRGYYNQSEAGSHTLQ M GC LGPDG  L GY Q AYDG D
Sbjct: 84   ETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            Y+ LNEDLRSWTA D AAQIS++K   A  AEH R+YL+  CVE L +YLE GK+TL   
Sbjct: 144  YLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHL 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            EPPKTHVT HP SD   TLRCWALGFYP EI+LTWQ++G+  +QD ELVETRP+GDGTFQ
Sbjct: 204  EPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP GEEQ YTCHVQHEGL EP+TLRW PA                       A 
Sbjct: 264  KWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAV 323

Query: 1025 I--VIWKKTPSGEKGGNYTQA 1081
            +  VIW+K  SG KGG+Y++A
Sbjct: 324  VAAVIWRKKSSGGKGGSYSKA 344


>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
           [Homo sapiens].
          Length = 338

 Score =  421 bits (1081), Expect = e-118
 Identities = 200/272 (73%), Positives = 223/272 (81%)
 Frame = +2

Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
           HS+ YF  AVSRP RG+ RFIA+GYVDDTQFVRFD+ +  PRMEPR PW++QEG +YW+E
Sbjct: 27  HSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYWEE 86

Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
           ETR  K +AQT  + L TLRGYYNQSEA SHTLQ M GC LG DG LL GY Q AYDG D
Sbjct: 87  ETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDGKD 146

Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
           Y+ALNEDLRSWTAAD AAQISKRK EAA+ AE  R+YL+G CVE L RYLE GK+ LQRA
Sbjct: 147 YLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRA 206

Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
           +PPKTHVT HP  D   TLRCWALGFYP EI LTWQR+G+DQ+QD+ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTFQ 266

Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 940
           KWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298


>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
            precursor [Homo sapiens].
          Length = 442

 Score =  409 bits (1052), Expect = e-114
 Identities = 201/322 (62%), Positives = 233/322 (72%), Gaps = 2/322 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YF TAVSRP RG+ R+IAV YVDDTQF+RFD+ A  PRMEPR PW++QEG  YW+ 
Sbjct: 24   HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
             T   K NAQT  V L  L   YNQSEAGSHTLQ M GC +GPDG LL GY Q AYDG D
Sbjct: 84   TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YI+LNEDLRSWTAAD  AQI++R +EA + AE +R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144  YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PAQPXXXXXXXXXXXXXXXXXXXXX 1018
            KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+  P                        
Sbjct: 264  KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323

Query: 1019 AGIVIWKKTPSGEKGGNYTQAA 1084
               V+W+K  S    G+Y+QAA
Sbjct: 324  VAAVMWRKKSSDRNRGSYSQAA 345


>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
            precursor [Homo sapiens].
          Length = 346

 Score =  409 bits (1052), Expect = e-114
 Identities = 201/322 (62%), Positives = 233/322 (72%), Gaps = 2/322 (0%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL YF TAVSRP RG+ R+IAV YVDDTQF+RFD+ A  PRMEPR PW++QEG  YW+ 
Sbjct: 24   HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
             T   K NAQT  V L  L   YNQSEAGSHTLQ M GC +GPDG LL GY Q AYDG D
Sbjct: 84   TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YI+LNEDLRSWTAAD  AQI++R +EA + AE +R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144  YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PAQPXXXXXXXXXXXXXXXXXXXXX 1018
            KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+  P                        
Sbjct: 264  KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323

Query: 1019 AGIVIWKKTPSGEKGGNYTQAA 1084
               V+W+K  S    G+Y+QAA
Sbjct: 324  VAAVMWRKKSSDRNRGSYSQAA 345


>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
           precursor [Homo sapiens].
          Length = 254

 Score =  243 bits (621), Expect = 2e-64
 Identities = 121/181 (66%), Positives = 139/181 (76%)
 Frame = +2

Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
           HSL YF TAVSRP RG+ R+IAV YVDDTQF+RFD+ A  PRMEPR PW++QEG  YW+ 
Sbjct: 24  HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            T   K NAQT  V L  L   YNQSEAGSHTLQ M GC +GPDG LL GY Q AYDG D
Sbjct: 84  TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
           YI+LNEDLRSWTAAD  AQI++R +EA + AE +R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 665 E 667
           E
Sbjct: 204 E 204


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,139,004
Number of extensions: 1127413
Number of successful extensions: 6694
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 6536
Number of HSP's successfully gapped: 76
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000415
         (1088 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp...   408   e-114
Alignment   gi|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus ...   407   e-114
Alignment   gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al...   403   e-112
Alignment   gi|XP_003086104.1| PREDICTED: h-2 class I histocompatibility an...   401   e-112
Alignment   gi|XP_003086103.1| PREDICTED: h-2 class I histocompatibility an...   401   e-112
Alignment   gi|XP_001473590.1| PREDICTED: h-2 class I histocompatibility an...   401   e-112
Alignment   gi|XP_001473611.1| PREDICTED: h-2 class I histocompatibility an...   401   e-112
Alignment   gi|XP_003086102.1| PREDICTED: h-2 class I histocompatibility an...   400   e-112
Alignment   gi|XP_979787.3| PREDICTED: h-2 class I histocompatibility antig...   397   e-111
Alignment   gi|XP_003085179.1| PREDICTED: h-2 class I histocompatibility an...   397   e-110

>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
           [Mus musculus].
          Length = 325

 Score =  408 bits (1048), Expect = e-114
 Identities = 186/274 (67%), Positives = 226/274 (82%)
 Frame = +2

Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
           HS+ YF T+VSRP  G+ RFI VGYVDDTQFVRFD+ A  PRMEPR PW++QEG +YW+ 
Sbjct: 27  HSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYWER 86

Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
           ET++ K N Q++ V L TL GYYNQSE+GSHT+Q M+GC +G DG  L GY Q AYDG D
Sbjct: 87  ETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRD 146

Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
           YIALNEDL++WTAAD+AA I++RKWE A AAE++R+YL+  CVE L RYLE+GK+TL R 
Sbjct: 147 YIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRT 206

Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
           +PPKTHVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 266

Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 267 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 300


>ref|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus musculus].
          Length = 354

 Score =  407 bits (1047), Expect = e-114
 Identities = 188/275 (68%), Positives = 223/275 (81%)
 Frame = +2

Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
           PH LSYFYT+VSRP  G+ RFI+VGYVD+T+FVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 51  PHLLSYFYTSVSRPGLGEPRFISVGYVDNTEFVRFDSDAENPRYEPRAPWMEQEGPEYWE 110

Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            ET+K K N Q + V L TL  YYNQS  GSHT+Q + GC +G DG LL GY+Q AYDG 
Sbjct: 111 RETQKAKGNEQIFRVNLRTLLSYYNQSAGGSHTIQVISGCEVGSDGRLLRGYQQFAYDGR 170

Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
           DYIALNEDL++WTAADMAAQI++RKWE A A E  ++YL+G CV+SLRRYLE+GK+TL R
Sbjct: 171 DYIALNEDLKTWTAADMAAQITRRKWEQAGATEKSKAYLEGACVQSLRRYLELGKETLLR 230

Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            +PPK HVT H  SD  VTLRCWALGFYP  I LTWQ  G++ +QDMELVETRPSGDGTF
Sbjct: 231 TDPPKAHVTCHHRSDGDVTLRCWALGFYPANIILTWQLNGEELTQDMELVETRPSGDGTF 290

Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
           QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 291 QKWASVVVPLGKEQNYTCHVHHEGLPEPLTLRWEP 325


>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
           [Mus musculus].
          Length = 357

 Score =  403 bits (1035), Expect = e-112
 Identities = 190/275 (69%), Positives = 219/275 (79%)
 Frame = +2

Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
           PHSL YF TAVSRP  G+ RFI VGYVDDTQFVRFD+ A NPRMEPR  WI+QEG +YW+
Sbjct: 22  PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81

Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            ET K +D  + + V L TL GYYNQS   SHTLQ M+GC +GPDG LL GY Q+AYDG 
Sbjct: 82  RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141

Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
           DYI+LNEDLRSWTA D+A+QISK K EA D A   R+YLQG CVE L RYL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201

Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
           ++PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261

Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
           QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+P
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEP 296


>ref|XP_003086104.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like [Mus musculus].
          Length = 370

 Score =  401 bits (1031), Expect = e-112
 Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSL YF TAVSRP  G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 25   PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 84

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D  LL GY+Q AYDG 
Sbjct: 85   EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 144

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYIALNEDL++WTAAD AA I++RKWE A  AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 145  DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 204

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
             + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGTF
Sbjct: 205  TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 264

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
            QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW   P+                      
Sbjct: 265  QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 324

Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
                V+  +  +G KG NY  A G
Sbjct: 325  VVAFVMKMRRNTGGKGVNYALAPG 348


>ref|XP_003086103.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like [Mus musculus].
          Length = 380

 Score =  401 bits (1031), Expect = e-112
 Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSL YF TAVSRP  G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 35   PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 94

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D  LL GY+Q AYDG 
Sbjct: 95   EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 154

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYIALNEDL++WTAAD AA I++RKWE A  AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 155  DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 214

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
             + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGTF
Sbjct: 215  TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 274

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
            QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW   P+                      
Sbjct: 275  QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 334

Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
                V+  +  +G KG NY  A G
Sbjct: 335  VVAFVMKMRRNTGGKGVNYALAPG 358


>ref|XP_001473590.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like isoform 1 [Mus musculus].
          Length = 385

 Score =  401 bits (1031), Expect = e-112
 Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSL YF TAVSRP  G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 40   PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 99

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D  LL GY+Q AYDG 
Sbjct: 100  EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 159

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYIALNEDL++WTAAD AA I++RKWE A  AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 160  DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 219

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
             + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGTF
Sbjct: 220  TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 279

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
            QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW   P+                      
Sbjct: 280  QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 339

Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
                V+  +  +G KG NY  A G
Sbjct: 340  VVAFVMKMRRNTGGKGVNYALAPG 363


>ref|XP_001473611.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
            chain-like isoform 2 [Mus musculus].
          Length = 368

 Score =  401 bits (1031), Expect = e-112
 Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSL YF TAVSRP  G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 23   PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 82

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D  LL GY+Q AYDG 
Sbjct: 83   EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 142

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYIALNEDL++WTAAD AA I++RKWE A  AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 143  DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 202

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
             + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGTF
Sbjct: 203  TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 262

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
            QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW   P+                      
Sbjct: 263  QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 322

Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
                V+  +  +G KG NY  A G
Sbjct: 323  VVAFVMKMRRNTGGKGVNYALAPG 346


>ref|XP_003086102.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
           chain-like [Mus musculus].
          Length = 370

 Score =  400 bits (1028), Expect = e-112
 Identities = 184/273 (67%), Positives = 221/273 (80%)
 Frame = +2

Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
           PHSL YF TAVSRP  G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 23  PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 82

Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
           E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D  LL GY+Q AYDG 
Sbjct: 83  EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 142

Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
           DYIALNEDL++WTAAD AA I++RKWE A  AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 143 DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 202

Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            + PK HVT HP S + VTLRCWALGFYP +I+LTWQ  G+D ++DMELVETRP+GDGTF
Sbjct: 203 TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 262

Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 940
           QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW
Sbjct: 263 QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW 295


>ref|XP_979787.3| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain
            isoform 7 [Mus musculus].
          Length = 379

 Score =  397 bits (1021), Expect = e-111
 Identities = 189/321 (58%), Positives = 234/321 (72%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HS+ YF TA+SRP   + RFI+VGYVDDTQFVRFD  A NPR EPR PW++ EG++YW+ 
Sbjct: 24   HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ET+  K N Q++   L T + YYNQSE G HT Q +FGC +G DG LL GY Q AYDG D
Sbjct: 84   ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDL +WTAAD+AA I++RKWE A AAEH+++YL+G CVESLRRYL++GK+TL R 
Sbjct: 144  YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW    P                     + 
Sbjct: 264  KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKESPSHQPMAVLVVLGAVIIIGAMVSF 323

Query: 1025 IVIWKKTPSGEKGGNYTQAAG 1087
            ++  ++T  G KGG+Y  A G
Sbjct: 324  VLKSRRTIGG-KGGDYAPAGG 343


>ref|XP_003085179.1| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
            [Mus musculus].
          Length = 388

 Score =  397 bits (1019), Expect = e-110
 Identities = 191/329 (58%), Positives = 234/329 (71%), Gaps = 8/329 (2%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HS+ YF TA+SRP   + RFI+VGYVDDTQFVRFD  A NPR EPR PW++ EG++YW+ 
Sbjct: 24   HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ET+  K N Q++   L T + YYNQSE G HT Q +FGC +G DG LL GY Q AYDG D
Sbjct: 84   ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YIALNEDL +WTAAD+AA I++RKWE A AAEH+++YL+G CVESLRRYL++GK+TL R 
Sbjct: 144  YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW   +P                     A 
Sbjct: 264  KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKEKPPPSTDSNMVIMAPMAVLVVLGAV 323

Query: 1025 IVIW--------KKTPSGEKGGNYTQAAG 1087
            I+I          +   G KGG+Y  A G
Sbjct: 324  IIIGAMVSFVLKSRRTIGGKGGDYAPAGG 352


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,446,693
Number of extensions: 920199
Number of successful extensions: 5211
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 5083
Number of HSP's successfully gapped: 136
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000415
         (1088 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a...   624   e-179
Alignment   gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].               571   e-163
Alignment   gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].               555   e-158
Alignment   gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a...   552   e-157
Alignment   gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].               534   e-152
Alignment   gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].               513   e-146
Alignment   gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa].                  457   e-129
Alignment   gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].               434   e-122
Alignment   gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].               390   e-109
Alignment   gi|XP_003361021.1| PREDICTED: class I histocompatibility antige...   256   2e-68

>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  624 bits (1609), Expect = e-179
 Identities = 297/322 (92%), Positives = 300/322 (93%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD
Sbjct: 23   PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 82

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA
Sbjct: 83   EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 142

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR
Sbjct: 143  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 202

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQP                     A
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322

Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
            G+VIW+KT SGEKGG+YTQAAG
Sbjct: 323  GVVIWRKTRSGEKGGSYTQAAG 344


>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
          Length = 361

 Score =  571 bits (1471), Expect = e-163
 Identities = 274/322 (85%), Positives = 283/322 (87%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSLSYFYTAVSRPD GDSRFI VGYVDDTQFVRFD+ A NPRMEPR PWI++EGQDYWD
Sbjct: 23   PHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYWD 82

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            EETRKVK+ AQ   V L TLRGYYNQSEAGSHTLQSMFGCYLGPDGLLL GYRQDAYDGA
Sbjct: 83   EETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDGA 142

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYIALNEDLRSWTAAD AAQI+KRKWEAAD AE WRSYLQGLCVESLR YLEMGKDTLQR
Sbjct: 143  DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQR 202

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            A+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  ADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQP                     A
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322

Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
            G+VIW+K  SGEKGG+YTQAAG
Sbjct: 323  GVVIWRKKRSGEKGGSYTQAAG 344


>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
          Length = 364

 Score =  555 bits (1431), Expect = e-158
 Identities = 270/347 (77%), Positives = 283/347 (81%)
 Frame = +2

Query: 47   LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
            +R+ GP                   PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF
Sbjct: 1    MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60

Query: 227  DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
            D+ APNPRMEPR PWIQQEGQDYWD ETR V  +AQT  V L TLRGYYNQSEAGSHT+Q
Sbjct: 61   DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120

Query: 407  SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
             M+GC +GPDGLLL GYRQDAYDGADYIALNEDLRSWTAAD AAQI+KRKWEAADAAE  
Sbjct: 121  VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180

Query: 587  RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
            RSYLQGLCVE L++YLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181  RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240

Query: 767  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
            WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300

Query: 947  AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAAG 1087
             QP                      G+VIW+K  SGEKGG+YTQAAG
Sbjct: 301  PQPPIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAG 347


>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  552 bits (1423), Expect = e-157
 Identities = 265/322 (82%), Positives = 278/322 (86%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSLSYFYTAVSRPDRGDSRF  VGYVDDTQFVRFD+ APN +MEPR  WI+QEG +YWD
Sbjct: 23   PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYWD 82

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
             ET+  K+ AQTY VGL TLRGYYNQSEAGSHTLQ M+GCYLGPDGLLL GYRQDAYDGA
Sbjct: 83   RETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDGA 142

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DY+ALNEDLRSWTAAD AAQI+KRKWEAAD AE  RSYLQGLCVESLR+YLEMGKDTLQR
Sbjct: 143  DYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQR 202

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q                      A
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQTPVPIVGIIVGLVLVLVAGAVVA 322

Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
            G+VIW+K  SGEKGG+YTQAAG
Sbjct: 323  GVVIWRKKRSGEKGGSYTQAAG 344


>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
          Length = 361

 Score =  534 bits (1376), Expect = e-152
 Identities = 255/322 (79%), Positives = 272/322 (84%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSL YF TAVSRPDRG  RFI+VGYVDDTQFVRFD+ APNPRMEPR PWI+QEGQ+YWD
Sbjct: 23   PHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYWD 82

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            EETR    +AQT+ V LN LRGYYNQSEAGSHTLQSM+GC +GPD L L GY QDAYDGA
Sbjct: 83   EETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDGA 142

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYIALNEDLRSWTAAD AAQI+KRKWEAAD AE  RSYL+G CVE L++YL+MG +TLQR
Sbjct: 143  DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQR 202

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP QP                     A
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVAGAVVA 322

Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
            G+VIW+K   GEKGG+YTQAAG
Sbjct: 323  GVVIWRKKRPGEKGGSYTQAAG 344


>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
          Length = 361

 Score =  513 bits (1320), Expect = e-146
 Identities = 249/322 (77%), Positives = 267/322 (82%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSLSY +T+VSRP RG+ RFIAVG VDDT  VRFD+ A  PR EPR  WI+QEG +YWD
Sbjct: 23   PHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYWD 82

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
            EETR  KDNAQT    LNTLRGYYNQSEA SHT+QS+FGC +GPD LLL  YRQDAYDGA
Sbjct: 83   EETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDGA 142

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DY+ALNEDLRSWTAAD AAQI+KRKWE A+ AE  RSYLQGLCVE L++YLEMG+DTLQR
Sbjct: 143  DYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQR 202

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ                      A
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQTPVPMVGIIVGLVLVLVAGAMVA 322

Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
            G+VIW+   SGEKGG+YTQAAG
Sbjct: 323  GVVIWRLKRSGEKGGSYTQAAG 344


>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
          Length = 401

 Score =  457 bits (1175), Expect = e-129
 Identities = 221/320 (69%), Positives = 243/320 (75%)
 Frame = +2

Query: 122  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
            PHSL YFYTAVSRP R D RF  VGYVDDTQFVRFD+ APNPR EPR PW++ EG +  D
Sbjct: 23   PHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCD 82

Query: 302  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
              TR  KD +Q + V LN LRGYYNQSEAGSHT Q + GCY+  DG LL GY Q AYDGA
Sbjct: 83   RNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGA 142

Query: 482  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
            DYI LNEDLRSWTA  MAAQI++RKWE    AE  R+YL+  CV+SL RYL  GK+TLQR
Sbjct: 143  DYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQR 202

Query: 662  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            ++PPKTHVTRHPSSD  VTLRCWALGFYPKEISLTWQ+EGQDQSQD+E+VETRPSGDGTF
Sbjct: 203  SDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTF 262

Query: 842  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
            +KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP QP                      
Sbjct: 263  RKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVTGAVVT 322

Query: 1022 GIVIWKKTPSGEKGGNYTQA 1081
            G+VIW+K  SG K   Y QA
Sbjct: 323  GVVIWRKKCSGGKVRKYQQA 342


>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
          Length = 355

 Score =  434 bits (1117), Expect = e-122
 Identities = 209/319 (65%), Positives = 245/319 (76%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HS+ YF+T VSRP  G+ R++ VGYVDDTQFVRFD+ A NPRMEPR PW++QEGQ+YWDE
Sbjct: 22   HSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDE 81

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            ET++VKD  Q +   L  LRGYYNQSE GSHT Q  +GC  G  G  LH + Q AYDG D
Sbjct: 82   ETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDGED 141

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YI LNEDL SWTAADMAA++++RKW+ + A E ++SYL+G CVE LRRYLE G++ LQRA
Sbjct: 142  YITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRA 201

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
            +PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGTFQ
Sbjct: 202  DPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQ 261

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++                        
Sbjct: 262  KWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR----LSAITIVGIVAGLVLLGAVI 317

Query: 1025 IVIWKKTPSGEKGGNYTQA 1081
             VIWKK  SG K G+Y+QA
Sbjct: 318  TVIWKKRFSGRKRGSYSQA 336


>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
          Length = 369

 Score =  390 bits (1002), Expect = e-109
 Identities = 190/320 (59%), Positives = 226/320 (70%)
 Frame = +2

Query: 125  HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
            HSL Y +  VSRP  G   + +VG++DDTQFVRF + A NPR+EPR PW++QEG++YWD 
Sbjct: 52   HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 111

Query: 305  ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
            +T   K++++     L  + G +N S++ SH+   + GC +G +G +L GY Q +YDG D
Sbjct: 112  QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDD 171

Query: 485  YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
            YI LNEDLRSWTA    AQI +RKWEA   AE +R+YL+  CVE LR+YLE GKD LQRA
Sbjct: 172  YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 231

Query: 665  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
             PPKTHVTRHP  D  VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 232  VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 291

Query: 845  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
            KWAALVVP GEEQSYTC VQHEGLQEPLTLRW   +P                      G
Sbjct: 292  KWAALVVPSGEEQSYTCQVQHEGLQEPLTLRW---EPPPLSLNLIMICIAVSVLVVTVLG 348

Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
             VIW+K  SG   GNY QAA
Sbjct: 349  TVIWRKRNSGGNRGNYVQAA 368


>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
           alpha chain-like [Sus scrofa].
          Length = 374

 Score =  256 bits (654), Expect = 2e-68
 Identities = 127/274 (46%), Positives = 176/274 (64%), Gaps = 1/274 (0%)
 Frame = +2

Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
           HSL Y Y A+S P  G  +F+AVGYVDD  F+R+D+     + EP+ PW+      YW++
Sbjct: 42  HSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYWEK 99

Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
           ET+K +  A+   V + T+ GYYNQS +G H+ Q MFGC +  DG    G+ Q  +DG D
Sbjct: 100 ETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDGHST-GFWQFGFDGQD 157

Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADA-AEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
           +++L+ +  SW +A+  A  +KR WE     AE+ ++Y++G+C+ SLR+YLE+G     R
Sbjct: 158 HLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSR 217

Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
            EPP   VT+H + D G TLRCWALGFYP++ISL+W    ++ +   E VETRPSGDGT+
Sbjct: 218 REPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDGTY 277

Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 943
           Q W A  VP GEE  YTCHVQH  L   LT+ W+
Sbjct: 278 QTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWE 311


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,155,803
Number of extensions: 734604
Number of successful extensions: 4397
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4307
Number of HSP's successfully gapped: 37
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000415
         (1088 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         553   e-155
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22   170   1e-39

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  553 bits (279), Expect = e-155
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055



 Score =  549 bits (277), Expect = e-153
 Identities = 277/277 (100%)
 Strand = Plus / Minus

                                                                            
Query: 389      gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158

                                                                            
Query: 449      cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098

                                                                            
Query: 509      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038

                                                                            
Query: 569      gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978

                                                     
Query: 629      tacctggagatggggaaggacacgctgcagcgcgcag 665
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941



 Score =  539 bits (272), Expect = e-150
 Identities = 272/272 (100%)
 Strand = Plus / Minus

                                                                            
Query: 119      ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653

                                                                            
Query: 179      cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593

                                                                            
Query: 239      ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533

                                                                            
Query: 299      gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473

                                                
Query: 359      ctgcgcggctactacaaccagagcgaggccgg 390
                ||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441



 Score =  537 bits (271), Expect = e-150
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908



 Score =  529 bits (267), Expect = e-147
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570



 Score =  529 bits (267), Expect = e-147
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600



 Score =  521 bits (263), Expect = e-145
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219



 Score =  513 bits (259), Expect = e-143
 Identities = 275/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996



 Score =  513 bits (259), Expect = e-143
 Identities = 274/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123



 Score =  450 bits (227), Expect = e-124
 Identities = 266/279 (95%)
 Strand = Plus / Plus

                                                                            
Query: 663      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
                |||| |||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121

                                                                            
Query: 723      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
                ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181

                                                                            
Query: 783      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
                ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241

                                                                            
Query: 843      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301

                                                       
Query: 903      agcacgagggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340



 Score =  412 bits (208), Expect = e-112
 Identities = 256/272 (94%)
 Strand = Plus / Minus

                                                                            
Query: 119      ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168

                                                                            
Query: 179      cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
                |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108

                                                                            
Query: 239      ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
                |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048

                                                                            
Query: 299      gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
                ||||||||||||||||| | || |||||||||||||| | || |||||  |||||| |||
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988

                                                
Query: 359      ctgcgcggctactacaaccagagcgaggccgg 390
                ||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956



 Score =  406 bits (205), Expect = e-110
 Identities = 259/277 (93%)
 Strand = Plus / Minus

                                                                            
Query: 389      gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672

                                                                            
Query: 449      cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
                | |||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612

                                                                            
Query: 509      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
                ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552

                                                                            
Query: 569      gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
                |||| ||||||||    ||||||||||||||||||   |||||||||||||||||||| |
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492

                                                     
Query: 629      tacctggagatggggaaggacacgctgcagcgcgcag 665
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455



 Score =  394 bits (199), Expect = e-107
 Identities = 253/271 (93%)
 Strand = Plus / Minus

                                                                            
Query: 671      ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 730
                |||||| || |||||||| |||||||||||||||||      |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541

                                                                            
Query: 731      gccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggaccag 790
                |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481

                                                                            
Query: 791      agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 850
                ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421

                                                                            
Query: 851      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 910
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361

                                               
Query: 911      ggcctgcaggagcccctcaccctgagatggg 941
                |||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330



 Score =  381 bits (192), Expect = e-103
 Identities = 252/272 (92%)
 Strand = Plus / Minus

                                                                            
Query: 119      ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | 
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069

                                                                            
Query: 179      cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
                |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009

                                                                            
Query: 239      ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
                || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949

                                                                            
Query: 299      gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
                |||  |||||||||||| |||| || || |||||||||| || |||||  |||||| |||
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889

                                                
Query: 359      ctgcgcggctactacaaccagagcgaggccgg 390
                ||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857



 Score =  377 bits (190), Expect = e-102
 Identities = 253/274 (92%)
 Strand = Plus / Plus

                                                                            
Query: 668      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 727
                ||||||||||| ||||||||||||||||||  || ||||      |||||  | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630

                                                                            
Query: 728      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 787
                |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690

                                                                            
Query: 788      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 847
                |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750

                                                                            
Query: 848      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 907
                ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810

                                                  
Query: 908      gagggcctgcaggagcccctcaccctgagatggg 941
                ||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844



 Score =  339 bits (171), Expect = 2e-90
 Identities = 247/271 (91%), Gaps = 1/271 (0%)
 Strand = Plus / Minus

                                                                            
Query: 120      gtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctc 179
                |||||||||||||||| |||||| ||||||||||||||||||||||||||||| |  | |
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799

                                                                            
Query: 180      gcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccc 239
                | |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 24644798 g-ttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740

                                                                            
Query: 240      cgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattggg 299
                ||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680

                                                                            
Query: 300      atgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacaccc 359
                |||||||||||||||| | || || || ||||||||||| | |||||  |||||||| ||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620

                                               
Query: 360      tgcgcggctactacaaccagagcgaggccgg 390
                |||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589



 Score =  335 bits (169), Expect = 3e-89
 Identities = 250/277 (90%)
 Strand = Plus / Minus

                                                                            
Query: 389      gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
                ||||||||||||||||||| || ||  |||||| || |||||||||||||||||||||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030

                                                                            
Query: 449      cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
                | | ||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970

                                                                            
Query: 509      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
                |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910

                                                                            
Query: 569      gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
                 ||| ||| |||||   |||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850

                                                     
Query: 629      tacctggagatggggaaggacacgctgcagcgcgcag 665
                ||| |||||||||  |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813



 Score =  327 bits (165), Expect = 7e-87
 Identities = 249/277 (89%)
 Strand = Plus / Minus

                                                                            
Query: 389      gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
                ||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102

                                                                            
Query: 449      cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
                | | ||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042

                                                                            
Query: 509      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
                |||||||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982

                                                                            
Query: 569      gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
                 ||| |||||||||   ||||||||||||||||||   ||||||||||| ||| |  | |
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922

                                                     
Query: 629      tacctggagatggggaaggacacgctgcagcgcgcag 665
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885



 Score =  319 bits (161), Expect = 2e-84
 Identities = 248/277 (89%)
 Strand = Plus / Minus

                                                                            
Query: 389      gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
                ||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231

                                                                            
Query: 449      cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
                | | ||||| ||| ||||| ||||||||||||||||||  ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171

                                                                            
Query: 509      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
                ||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111

                                                                            
Query: 569      gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
                 ||| |||||||||   ||||||||||||||||||   ||||||||||| |||||  | |
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051

                                                     
Query: 629      tacctggagatggggaaggacacgctgcagcgcgcag 665
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014



 Score =  311 bits (157), Expect = 4e-82
 Identities = 247/277 (89%)
 Strand = Plus / Minus

                                                                            
Query: 389      gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
                |||||||||||| ||||||||||||  |||||| || |||| ||||||||||||||||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306

                                                                            
Query: 449      cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
                | ||||||||| |||   | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246

                                                                            
Query: 509      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
                |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186

                                                                            
Query: 569      gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
                ||||||||||||||   ||| ||||||||| ||||   |||||||| || |||||  | |
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126

                                                     
Query: 629      tacctggagatggggaaggacacgctgcagcgcgcag 665
                |||||||||||||||||  ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089



 Score =  266 bits (134), Expect = 2e-68
 Identities = 188/206 (91%)
 Strand = Plus / Minus

                                                                            
Query: 119      ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
                |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||  | 
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490

                                                                            
Query: 179      cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
                || ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430

                                                                            
Query: 239      ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
                |||||||||||||||||||| |||| |||||||||  |||||||||||||||||| ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370

                                          
Query: 299      gatgaggagacgcggaaagtcaagga 324
                ||| || |||||||||| ||||||||
Sbjct: 24707369 gatcagcagacgcggaatgtcaagga 24707344



 Score =  232 bits (117), Expect = 3e-58
 Identities = 120/121 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        ctctccacccacccggctctgctgagcttctccccagactccgaggctgaggatcatggg 60
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 24687146 ctctccacccacccggctctgctcagcttctccccagactccgaggctgaggatcatggg 24687087

                                                                            
Query: 61       gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24687086 gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 24687027

                 
Query: 121      t 121
                |
Sbjct: 24687026 t 24687026



 Score =  226 bits (114), Expect = 2e-56
 Identities = 231/270 (85%)
 Strand = Plus / Minus

                                                                            
Query: 119      ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
                ||||||||||||||||||||| ||| |||| | ||||||||||| | |||||||||  | 
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722

                                                                            
Query: 179      cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
                ||||||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662

                                                                            
Query: 239      ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
                ||||| | | ||| |||||| |||| |  |  |||| |||||||||||| ||| ||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602

                                                                            
Query: 299      gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
                || |||||||||||||    |||||||||||||||||||  | ||| |   |||||||||
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542

                                              
Query: 359      ctgcgcggctactacaaccagagcgaggcc 388
                ||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512



 Score =  224 bits (113), Expect = 8e-56
 Identities = 119/121 (98%)
 Strand = Plus / Minus

                                                                            
Query: 1        ctctccacccacccggctctgctgagcttctccccagactccgaggctgaggatcatggg 60
                ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 24751660 ctctccacccacccggctctgctcagcttctccccagaccccgaggctgaggatcatggg 24751601

                                                                            
Query: 61       gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751600 gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 24751541

                 
Query: 121      t 121
                |
Sbjct: 24751540 t 24751540



 Score =  210 bits (106), Expect = 1e-51
 Identities = 230/270 (85%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                            
Query: 119      ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
                ||||||||||||||||||||| ||| |||| | ||||||||||| | |||||||||  | 
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592

                                                                            
Query: 179      cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
                ||||||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532

                                                                            
Query: 239      ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
                ||||| | | ||| |||||| |||| |  |  |||| |||||||||||| ||| || |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473

                                                                            
Query: 299      gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
                || |||||||||||||    |||||||||||||||||||  | ||| |   |||||||||
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413

                                              
Query: 359      ctgcgcggctactacaaccagagcgaggcc 388
                ||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383



 Score =  170 bits (86), Expect = 1e-39
 Identities = 107/114 (93%)
 Strand = Plus / Minus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878

                                                                      
Query: 1001     gtccctggaactgtggtggctggaattgtgatctggaagaaaaccccctcaggt 1054
                ||| ||||| |||||||||||||| |||||||||||| ||| || | |||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824



 Score =  145 bits (73), Expect = 6e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392

                                                     
Query: 1001     gtccctggaactgtggtggctggaattgtgatctgga 1037
                ||| ||||| | |||||||||||| ||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctgga 24749355



 Score =  141 bits (71), Expect = 9e-31
 Identities = 83/87 (95%)
 Strand = Plus / Minus

                                                                            
Query: 25       agcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgct 84
                ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||
Sbjct: 24659070 agcttctccccagactccgcggctgaggatcatggggccccgagccctcttcctgctgct 24659011

                                           
Query: 85       gtcggggaccctggccctgaccgggac 111
                ||||||| |||||||||||||||||||
Sbjct: 24659010 gtcgggggccctggccctgaccgggac 24658984



 Score =  141 bits (71), Expect = 9e-31
 Identities = 101/111 (90%)
 Strand = Plus / Plus

                                                                            
Query: 434      gacgggctcctcctccacgggtacagacaggacgcctacgacggcgccgattacatcgcc 493
                ||||||| |||||||| ||||||||| |||  |||||| |||||||| |||||||||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997

                                                                   
Query: 494      ctgaacgaggacctgcgctcctggaccgcggcggacatggcggctcagatc 544
                ||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatc 27615048



 Score =  137 bits (69), Expect = 1e-29
 Identities = 90/97 (92%)
 Strand = Plus / Minus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946

                                                     
Query: 1001     gtccctggaactgtggtggctggaattgtgatctgga 1037
                ||| ||||| |  |||||||||||  |||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctgga 24721909



 Score =  137 bits (69), Expect = 1e-29
 Identities = 156/185 (84%)
 Strand = Plus / Minus

                                                                            
Query: 125      cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctcgcttc 184
                |||||| |||| |||||| |||| | |||||||||||||| || ||||||  | || | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407

                                                                            
Query: 185      atcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccccgaat 244
                 | |  |||||||| ||||||||||||||||||||||||||||||| | | || | ||||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347

                                                                            
Query: 245      ccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgggatgag 304
                ||| |||||||||| |||| ||||||| |  |||||||||||||||| ||||||||||||
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287

                     
Query: 305      gagac 309
                |||||
Sbjct: 27210286 gagac 27210282



 Score =  137 bits (69), Expect = 1e-29
 Identities = 90/97 (92%)
 Strand = Plus / Plus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517

                                                     
Query: 1001     gtccctggaactgtggtggctggaattgtgatctgga 1037
                ||| ||||| | |||||| ||||| ||||||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctgga 27616554



 Score =  137 bits (69), Expect = 1e-29
 Identities = 156/185 (84%)
 Strand = Plus / Minus

                                                                            
Query: 125      cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctcgcttc 184
                |||||| |||| |||||| |||| | |||||||||||||| || ||||||  | || | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933

                                                                            
Query: 185      atcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccccgaat 244
                 | |  |||||||| ||||||||||||||||||||||||||||||| | | || | ||||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873

                                                                            
Query: 245      ccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgggatgag 304
                ||| |||||||||| |||| ||||||| |  |||||||||||||||| ||||||||||||
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813

                     
Query: 305      gagac 309
                |||||
Sbjct: 27629812 gagac 27629808



 Score =  129 bits (65), Expect = 3e-27
 Identities = 89/97 (91%)
 Strand = Plus / Plus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                |||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806

                                                     
Query: 1001     gtccctggaactgtggtggctggaattgtgatctgga 1037
                ||| ||||| |  ||||||||||| ||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctgga 24603843



 Score =  129 bits (65), Expect = 3e-27
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042

                                                     
Query: 1001     gtccctggaactgtggtggctggaattgtgatctgga 1037
                ||  ||||| | |||||||||||| ||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctgga 24643005



 Score =  129 bits (65), Expect = 3e-27
 Identities = 89/97 (91%)
 Strand = Plus / Minus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                |||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730

                                                     
Query: 1001     gtccctggaactgtggtggctggaattgtgatctgga 1037
                ||| ||||| |  ||||||||||| ||||||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctgga 24705693



 Score =  127 bits (64), Expect = 1e-26
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                            
Query: 26       gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 85
                ||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||||
Sbjct: 24645270 gcttctctccagactccgaggctgaggatcatggggccccgagccctcttcttgctgctg 24645211

                                    
Query: 86       tcggggaccctggccctgac 105
                ||||||||||||||||||||
Sbjct: 24645210 tcggggaccctggccctgac 24645191



 Score =  123 bits (62), Expect = 2e-25
 Identities = 80/86 (93%)
 Strand = Plus / Minus

                                                                            
Query: 26       gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 85
                |||||||||||||||||| |||||||||||||||||||  ||| ||||||||||||||| 
Sbjct: 24724195 gcttctccccagactccgcggctgaggatcatggggccccgaggcctcttcctgctgctc 24724136

                                          
Query: 86       tcggggaccctggccctgaccgggac 111
                |||||| |||||||||||||||||||
Sbjct: 24724135 tcgggggccctggccctgaccgggac 24724110



 Score =  119 bits (60), Expect = 3e-24
 Identities = 108/124 (87%)
 Strand = Plus / Plus

                                                                            
Query: 124      ccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctcgctt 183
                ||||||||||||  || |||||||||||||||||||||||| |||| ||||  | |||| 
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356

                                                                            
Query: 184      catcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccccgaa 243
                ||| ||||||||||||||||||||||||||  || || ||||||||| | ||||||||||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416

                    
Query: 244      tccg 247
                ||||
Sbjct: 24620417 tccg 24620420



 Score =  119 bits (60), Expect = 3e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 950      cagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctggtccctgga 1009
                ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 26675472 cagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtcgctgga 26675413

                                            
Query: 1010     actgtggtggctggaattgtgatctgga 1037
                 |  ||||||||||| ||||||||||||
Sbjct: 26675412 gccatggtggctggagttgtgatctgga 26675385



 Score =  113 bits (57), Expect = 2e-22
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                            
Query: 941      gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
                ||||||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819

                                                     
Query: 1001     gtccctggaactgtggtggctggaattgtgatctgga 1037
                ||| ||||| |  ||||| ||||| ||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctgga 24656782



 Score =  111 bits (56), Expect = 8e-22
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                            
Query: 26       gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 85
                ||||||||||||||   |||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 24707970 gcttctccccagacaaagaggctaaggatcatggggcctggagcccttgtcctgctgctg 24707911

                                                    
Query: 86       tcggggaccctggccctgaccgggacccaggcgggt 121
                || ||| ||||||||||||||||||||  |||||||
Sbjct: 24707910 tccggggccctggccctgaccgggacctgggcgggt 24707875



 Score =  103 bits (52), Expect = 2e-19
 Identities = 217/272 (79%)
 Strand = Plus / Plus

                                                                            
Query: 119      ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
                ||||||||||||||||| ||||||||||| ||||||||||| ||    ||  ||||  | 
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508

                                                                            
Query: 179      cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
                ||||||  || ||||||||| || |||||||||||||||||||||||||||| | | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568

                                                                            
Query: 239      ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
                ||||||||| ||  |||||| |||   |||||| |  ||| |||||| | ||| ||||| 
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628

                                                                            
Query: 299      gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
                |||  | | || || |    |||||||| | |||||| || |  |||| |||||||   |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688

                                                
Query: 359      ctgcgcggctactacaaccagagcgaggccgg 390
                ||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                            
Query: 465      acgcctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcgg 524
                |||||||||||||||  ||||||||| |  |||||||||||||| | |||||||| || |
Sbjct: 27209855 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27209796

                                                     
Query: 525      cggacatggcggctcagatctccaagcgcaagtggga 561
                ||||||||||||||| | || |  |||||||||||||
Sbjct: 27209795 cggacatggcggctcgggtcacacagcgcaagtggga 27209759



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                            
Query: 201      tggacgacacgcagttcgtgcggttcgacaactacgccccgaatccgcggatggagcctc 260
                ||||||||||||||||||| ||||||  || | | ||| |||||||  || |||||||||
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343

                                                         
Query: 261      gggtgccgtggatacagcaggaggggcaggactattgggat 301
                ||| |||||||||  |||||||||||| ||| |||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggat 27603384



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                            
Query: 465      acgcctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcgg 524
                |||||||||||||||  ||||||||| |  |||||||||||||| | |||||||| || |
Sbjct: 27629381 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27629322

                                                     
Query: 525      cggacatggcggctcagatctccaagcgcaagtggga 561
                ||||||||||||||| | || |  |||||||||||||
Sbjct: 27629321 cggacatggcggctcgggtcacacagcgcaagtggga 27629285



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 468      cctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcg 523
                |||||||||||| ||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 27603797 cctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 1046     ccctcaggtgaaaaaggagggaactacactcaggctgc 1083
                |||||||||||||||||||||| |||||||||||||||
Sbjct: 24604267 ccctcaggtgaaaaaggagggagctacactcaggctgc 24604304



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 607      gtgtgtggagtcgctccgcagatacctggagatggggaaggacacgctgcagcgcgcag 665
                ||||||||||| ||||||||  ||||| |||| ||||||||||  ||||||||||||||
Sbjct: 27603936 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 80       ctgctgtcggggaccctggccctgaccgggacccaggcgggt 121
                |||||||||||| ||||||||||||||||||||  |||||||
Sbjct: 24627347 ctgctgtcgggggccctggccctgaccgggacctgggcgggt 24627306



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 1050     caggtgaaaaaggagggaactacactcaggctgc 1083
                |||||||||||||||||| |||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgc 24642528



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 1050     caggtgaaaaaggagggaactacactcaggctgc 1083
                |||||||||||||||||| |||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgc 24684361



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 1050     caggtgaaaaaggagggaactacactcaggctgc 1083
                |||||||||||||||||| |||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgc 24748860


>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
          Length = 107

 Score =  170 bits (86), Expect = 1e-39
 Identities = 101/106 (95%)
 Strand = Plus / Plus

                                                                       
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  | 
Sbjct: 2   ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61

                                                         
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 224
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 107


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,413,880
Number of extensions: 262
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 59
Length of query: 1088
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1067
Effective length of database: 2,808,413,156
Effective search space: 2996576837452
Effective search space used: 2996576837452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)