Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000415
(1088 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru... 474 e-134
Alignment gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]. 468 e-132
Alignment gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru... 463 e-130
Alignment gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru... 462 e-130
Alignment gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ... 458 e-129
Alignment gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp... 457 e-129
Alignment gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur... 457 e-129
Alignment gi|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus]. 457 e-129
Alignment gi|NP_001035644.1| major histocompatibility complex, class I, A... 455 e-128
Alignment gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus]. 454 e-128
>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
Length = 361
Score = 474 bits (1220), Expect = e-134
Identities = 232/320 (72%), Positives = 253/320 (79%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YFYT VSRP G+ RFIAVGYVDDTQFVRFD+ A +PR EPRVPW++QEG +YWD
Sbjct: 27 HSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYWDR 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETR +KD AQT+ V LNTL GYYNQSEAGSHTLQ M+GC + PDG L GYRQDAYDG D
Sbjct: 87 ETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDGRD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALN+DLRSWTAAD AAQI+KRKWEAA AE R+YL+G CVE LRRYLE GKDTL RA
Sbjct: 147 YIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLLRA 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HVTRHPSSD VTLRCWALGFYP+EISLTWQ G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P P AG
Sbjct: 267 KWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEP--PQTSFLTMGIIVGLVVLVVAVVAG 324
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW+K SGEKG YTQAA
Sbjct: 325 AVIWRKKHSGEKGRIYTQAA 344
>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
Length = 359
Score = 468 bits (1203), Expect = e-132
Identities = 228/320 (71%), Positives = 251/320 (78%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YFYTAVSRP G+ RFI VGYVDDTQFVRFD+ A +PR+EPR W++QEG +YWD+
Sbjct: 24 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYWDQ 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETRK KD+AQ + +GLNTLRGYYNQSEAGSHTLQ M+GC +GPDG LL G+ Q Y+G D
Sbjct: 84 ETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEGRD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAAD AAQISKRKWEAAD AE R+YL+G CVE L RYLE GKDTL RA
Sbjct: 144 YIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLLRA 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HVT HP S VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KW ALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q AG
Sbjct: 264 KWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ-TSFLTMGIIVGLVLLVTGAVVAG 322
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW K SGEKGGNY QA+
Sbjct: 323 FVIWMKKRSGEKGGNYIQAS 342
>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
Length = 363
Score = 463 bits (1192), Expect = e-130
Identities = 227/346 (65%), Positives = 252/346 (72%)
Frame = +2
Query: 47 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
+R+MGP HSL YFYTAVSRP G+ RFI+VGYVDDTQFVRF
Sbjct: 1 MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 227 DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
D+ APNPRMEPR W++QEG +YWD ETR KD AQ + V LNTLRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120
Query: 407 SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
M+GCY+GPDG L G+ Q YDG DY+ALNEDLRSWTA + AQISKRK EAA AE
Sbjct: 121 LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180
Query: 587 RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
R+YL+G CVE LRRYLE GKDTL RA+PPK HVTRHP S VTLRCWALGFYP+EISLT
Sbjct: 181 RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240
Query: 767 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300
Query: 947 AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
QP AG+VI K SGEK G Y QA+
Sbjct: 301 PQPSFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQAS 346
>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
Length = 358
Score = 462 bits (1190), Expect = e-130
Identities = 229/320 (71%), Positives = 249/320 (77%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YF TAVSRP G+ RFIAVGYVDDTQF RFD+ APNPR EPRVPW++QEG +YWD
Sbjct: 24 HSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYWDR 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
TR KD AQT+ V LN LRGYYNQSEAGSHTLQ M GC +GPDG LL G+ Q YDG +
Sbjct: 84 NTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDGRN 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAAD AAQI+KRKWEAA AAE R+Y++G CVE LRRYLE GKD L RA
Sbjct: 144 YIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALLRA 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HVT HP S+ VTLRCWALGFYP+EISLTWQREG+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P P AG
Sbjct: 264 KWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP--PQTSFLTMGIIVGLVLLVVAVVAG 321
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW+K SGEKG YTQAA
Sbjct: 322 AVIWRKKRSGEKGRIYTQAA 341
>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
Length = 398
Score = 458 bits (1179), Expect = e-129
Identities = 225/320 (70%), Positives = 245/320 (76%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YFYTAVSRP G+ RFI VGYVDDT+FVRFD+ AP+PRMEPR W++QEG +YWD+
Sbjct: 52 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETRK KD AQT+ LN+LRGYYNQSEAGSHTLQ M+GC +GPDG LL GY Q YDG D
Sbjct: 112 ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAAD AAQISKRK EAA A R YL G CVESLRRYLE GK+TL RA
Sbjct: 172 YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HVT HP S VTLRCWALGFYP+EI LTWQ G+DQ+QDMELVETRP GDG FQ
Sbjct: 232 DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P P AG
Sbjct: 292 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP--PQTPFLTMGIIVGLVLLVVAVVAG 349
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW+K SGEKG YTQA+
Sbjct: 350 AVIWRKKRSGEKGRTYTQAS 369
>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
[Bos taurus].
Length = 360
Score = 457 bits (1176), Expect = e-129
Identities = 220/319 (68%), Positives = 245/319 (76%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF TAVSRP G+ R++ VGYVDDTQFVRFD+ A NPRMEPR W++QEG +YWD
Sbjct: 24 HSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQEGPEYWDR 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
TR K NAQ++ VGLNTLRGYYNQSEAGSHTLQ M GCY+GPDG LL G+ Q YDG D
Sbjct: 84 NTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQYGYDGRD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
Y+ALNEDLRSWTAAD AQI+KRKWEA AE R+YL+G CVE LRR++E GKDTL RA
Sbjct: 144 YLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENGKDTLLRA 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HVT HP SD VTLRCWALGFYP+EISLTWQ G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAALVVP GEEQ YTC VQHEGLQEPLTL+W+P QP AG
Sbjct: 264 KWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQPSFLTMGIIVGLVLLVVTGAVVAG 323
Query: 1025 IVIWKKTPSGEKGGNYTQA 1081
+VI K PSGEK G Y QA
Sbjct: 324 VVICMKKPSGEKRGTYIQA 342
>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 457 bits (1176), Expect = e-129
Identities = 223/352 (63%), Positives = 253/352 (71%)
Frame = +2
Query: 29 SPQTPRLRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDD 208
SPQT R+R+MGP HSLSYF T VSRP G+ RF AVGYVDD
Sbjct: 69 SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128
Query: 209 TQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEA 388
TQF RFD+ APNPRMEPR PW++QEG +YW+ TR K Q GLNTLRG+YNQSEA
Sbjct: 129 TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188
Query: 389 GSHTLQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAA 568
GSHTLQ +FGC +GP+G LL G Q+AYDGADY+ALNEDLRSWTAA+ AQI+KRKWE +
Sbjct: 189 GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248
Query: 569 DAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 748
AE R+YL+ CV+ L R+LE GKDTL RA+PPKTHV HP SD VTLRCWALGFYP
Sbjct: 249 GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308
Query: 749 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 928
+EISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309 EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368
Query: 929 TLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
+LRW P QP G VIW+ SG+ G YTQAA
Sbjct: 369 SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAA 420
>ref|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 457 bits (1176), Expect = e-129
Identities = 223/352 (63%), Positives = 253/352 (71%)
Frame = +2
Query: 29 SPQTPRLRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDD 208
SPQT R+R+MGP HSLSYF T VSRP G+ RF AVGYVDD
Sbjct: 69 SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128
Query: 209 TQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEA 388
TQF RFD+ APNPRMEPR PW++QEG +YW+ TR K Q GLNTLRG+YNQSEA
Sbjct: 129 TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188
Query: 389 GSHTLQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAA 568
GSHTLQ +FGC +GP+G LL G Q+AYDGADY+ALNEDLRSWTAA+ AQI+KRKWE +
Sbjct: 189 GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248
Query: 569 DAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 748
AE R+YL+ CV+ L R+LE GKDTL RA+PPKTHV HP SD VTLRCWALGFYP
Sbjct: 249 GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308
Query: 749 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 928
+EISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309 EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368
Query: 929 TLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
+LRW P QP G VIW+ SG+ G YTQAA
Sbjct: 369 SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAA 420
>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 362
Score = 455 bits (1171), Expect = e-128
Identities = 224/346 (64%), Positives = 252/346 (72%)
Frame = +2
Query: 47 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
+R++GP HSL YFYTAVSRP G+ RFI+VGYVDDTQFVRF
Sbjct: 1 MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 227 DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
D+ AP+PR+EP W++QEG +YW +ET++ KD AQ + V LNTLRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120
Query: 407 SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
M+GC +GPDGLL GY Q AYDG DYIALNEDLRSWTAAD AAQ++K EAA A
Sbjct: 121 EMYGCDVGPDGLL-RGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179
Query: 587 RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
R YL+G CVE LRRYL GKDTL RA+PPKTHV HP SD VTLRCWALGFYP EISLT
Sbjct: 180 RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239
Query: 767 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240 WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299
Query: 947 AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
QP G +IW+K SGEKG YTQ A
Sbjct: 300 PQPSIPIMGIIVGLVLLMVTGAVVTGAMIWRKKHSGEKGRGYTQTA 345
>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
Length = 361
Score = 454 bits (1167), Expect = e-128
Identities = 225/346 (65%), Positives = 250/346 (72%)
Frame = +2
Query: 47 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
+R+MGP HS+ YF TAVSRP G+ +++ VGYVDDTQFVRF
Sbjct: 1 MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60
Query: 227 DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
D+ APNPRMEPR W++QEG +YWDEET++ K Q + V LNTLRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120
Query: 407 SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
M GC +GPDG L G+ Q YDG DY+ALNEDLRSWTAAD AQISKRK EAA AAE
Sbjct: 121 WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180
Query: 587 RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
R Y++G CVE LRRYLE GKDTL RA+PPK HVT HP SD VTLRCWALGFYPKEISLT
Sbjct: 181 RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240
Query: 767 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300
Query: 947 AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAA 1084
P AG VIW+K SGEKG YTQA+
Sbjct: 301 --PQTPFLTVGIIVGLVLLVVAVVAGAVIWRKKCSGEKGRTYTQAS 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,396,800
Number of extensions: 1126932
Number of successful extensions: 6903
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 6746
Number of HSP's successfully gapped: 73
Length of query: 362
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 259
Effective length of database: 14,273,310
Effective search space: 3696787290
Effective search space used: 3696787290
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000415
(1088 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]. 456 e-128
Alignment gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris]. 446 e-125
Alignment gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris]. 413 e-115
Alignment gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]. 361 e-100
Alignment gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris]. 361 e-100
Alignment gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein... 195 7e-50
Alignment gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s... 134 2e-31
Alignment gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati... 69 1e-11
Alignment gi|XP_545727.2| PREDICTED: similar to T-cell surface glycoprote... 68 2e-11
Alignment gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote... 67 3e-11
>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
Length = 361
Score = 456 bits (1174), Expect = e-128
Identities = 221/320 (69%), Positives = 249/320 (77%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YFYT+VSRP RGD RFIAVGYVDDTQFVRFD+ A RMEPR PW++QEG +YWD
Sbjct: 27 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDR 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETR VK+ AQ Y V L+TLRGYYNQSEAGSHT Q+M+GC LGP G LL GY QDAYDGAD
Sbjct: 87 ETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGAD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAAD AAQI++RKWEAA AEH R+YL+ CVE LRRYLEMGK+TL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRA 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 EPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+ G
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS--PLSTIVIVSIAALVLLVVSGVIG 324
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW+K SG KG Y+ AA
Sbjct: 325 AVIWRKQRSGGKGPGYSHAA 344
>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
Length = 358
Score = 446 bits (1148), Expect = e-125
Identities = 217/320 (67%), Positives = 247/320 (77%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YFYT+VSRP RGD RFIAVGYVDDTQFVRFD+ A RMEPR PW++QEG +YWD
Sbjct: 24 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYWDP 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
+TR +K+ A+T+ V L+TLRGYYNQSEAGSHT Q MFGC LGP G LL GY QDAYDGAD
Sbjct: 84 QTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDGAD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAAD AAQI++RK EAA A H R+YL+ CVE LRRYLEMGK+TL RA
Sbjct: 144 YIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLLRA 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 204 EPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+ G
Sbjct: 264 KWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEPS--PLSTIVIVSIAALVLLVVAGVIG 321
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW+K SG KG Y+ AA
Sbjct: 322 AVIWRKQRSGGKGPGYSHAA 341
>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
Length = 361
Score = 413 bits (1061), Expect = e-115
Identities = 197/320 (61%), Positives = 242/320 (75%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL +F+TAVSRP RGD +I+VGYVDDTQF+RF++ A +P++EPR W++QEG ++W+E
Sbjct: 27 HSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEE 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
+T K +AQT L T GYYNQSEAGSHT Q GC +GPDG LL GY Q AYDGAD
Sbjct: 87 QTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGAD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
Y+AL+EDLRSWTAAD AAQI++RKWEAA AA+++R YLQG CV+SL +YLE GK+TLQ
Sbjct: 147 YLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLT 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK ++TRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 DPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+ G
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS--PLSTIVIVSIAALVLLVVAGVIG 324
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW+K SG KG Y+ AA
Sbjct: 325 AVIWRKQRSGGKGPGYSHAA 344
>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
Length = 381
Score = 361 bits (926), Expect = e-100
Identities = 175/321 (54%), Positives = 221/321 (68%), Gaps = 2/321 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL + T VSRP G+ R AV YVDDT F RF++ R EP V W++QEG +YW+E
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 305 ETRKVKDNAQTYGVGLNTL-RGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
T + Q LN + + Y NQS GSHT Q++ GC +GPDG L GY++ AYDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYI L+EDLRSW D AQI++RKW+AA AE+ +++L+G C+E LRR+LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPXXXXXXXXXXXXXXXXXXXXX 1018
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331
Query: 1019 AGIVIWKKTPSGEKGGNYTQA 1081
G+VIW+K SG KGG+Y+QA
Sbjct: 332 VGVVIWRKKHSGRKGGSYSQA 352
>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
Length = 381
Score = 361 bits (926), Expect = e-100
Identities = 175/321 (54%), Positives = 221/321 (68%), Gaps = 2/321 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL + T VSRP G+ R AV YVDDT F RF++ R EP V W++QEG +YW+E
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 305 ETRKVKDNAQTYGVGLNTL-RGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
T + Q LN + + Y NQS GSHT Q++ GC +GPDG L GY++ AYDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYI L+EDLRSW D AQI++RKW+AA AE+ +++L+G C+E LRR+LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPXXXXXXXXXXXXXXXXXXXXX 1018
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331
Query: 1019 AGIVIWKKTPSGEKGGNYTQA 1081
G+VIW+K SG KGG+Y+QA
Sbjct: 332 VGVVIWRKKHSGRKGGSYSQA 352
>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
(Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
familiaris].
Length = 315
Score = 195 bits (495), Expect = 7e-50
Identities = 106/280 (37%), Positives = 153/280 (54%), Gaps = 3/280 (1%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
P+SLS+FYT +SRP G F A Y++D F +D+ + PR PW Q EG + W+
Sbjct: 27 PYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDS--ETGKAIPRYPWSQMEGIEDWE 84
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
+E++ K + V L + YY E GSHT Q MFGC L + + + AYDG
Sbjct: 85 KESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRYAYDGR 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADA-AEHWRSYLQGLCVESLRRYLEMGKDTLQ 658
++I N+++ +W D AA +K+KWEA + + ++YL+ C L+RYLE GK L
Sbjct: 143 NFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYLD 202
Query: 659 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 838
R EPP +T H + + TL+CW GFYP+EI L W + D + PSG+ T
Sbjct: 203 RQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSGNNT 261
Query: 839 FQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPAQ 952
+Q W + P + SY+C V+H L +PLT+ WD Q
Sbjct: 262 YQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301
>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
(FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
transporter, alpha chain) [Canis familiaris].
Length = 354
Score = 134 bits (336), Expect = 2e-31
Identities = 86/271 (31%), Positives = 131/271 (48%), Gaps = 2/271 (0%)
Frame = +2
Query: 128 SLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWI-QQEGQDYWDE 304
SL Y TAVS P G F A G++ Q++ ++N + EP W+ + + YW++
Sbjct: 28 SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNNL--RAQAEPYGAWVWENQVSWYWEK 85
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ET ++ + L L + G +TLQ + GC LGPD + + A +G D
Sbjct: 86 ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138
Query: 485 YIALNEDLRSWTAADMAAQ-ISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
++ + L +W + +SKR + A A R++L C + L +LE G+ L+
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
EPP + P S L C A FYP E+ L + R G + P+GDG+F
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 934
W++L V G+E Y C VQH GL +PLT+
Sbjct: 257 HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTV 287
>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
beta chain precursor (MHC class II antigen DMB) [Canis
familiaris].
Length = 263
Score = 68.6 bits (166), Expect = 1e-11
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Frame = +2
Query: 659 RAEPPKTHVTRHP--SSDLGVTLRCWALGFYPKEISLTWQREGQD-QSQDMELVETRPSG 829
R PP V + ++ V L C+ GFYP +++++W++ GQ S L +P+G
Sbjct: 111 RTRPPTVQVAKSTPFNTKESVMLACYVWGFYPADVTISWRKNGQPVPSHSSALNMAQPNG 170
Query: 830 DGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
D T+Q + L P E +YTC V+H G EP+ W P
Sbjct: 171 DWTYQTVSHLATTPSYEDTYTCVVEHIGAPEPVCEDWTP 209
>ref|XP_545727.2| PREDICTED: similar to T-cell surface glycoprotein CD1e precursor
(CD1e antigen) (R2G1) [Canis familiaris].
Length = 300
Score = 67.8 bits (164), Expect = 2e-11
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
Frame = +2
Query: 401 LQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAA---- 568
LQ GC L G + AY G+D+++ + SW + A +++ E
Sbjct: 109 LQMSAGCRLHT-GKASESFLNGAYQGSDFLSFQGN--SWYPSPGAGSRARKVCEMLNRYQ 165
Query: 569 DAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 745
D E +S + +C + L LE GK L R P+ ++ PS G + L C GF+
Sbjct: 166 DIKEIVKSLIGYICPQFLAGILEAGKAELGRQVRPEAWLSADPSPGPGRLRLVCHVSGFH 225
Query: 746 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 922
PK + +TW R G+ + + + P DGT+ A L V E +C V+H L +
Sbjct: 226 PKPVRVTWMR-GEQEQRGTRRGDFLPHADGTWYLRATLDVAAREAAGLSCRVKHSSLGGQ 284
Query: 923 PLTLRWD 943
+ L W+
Sbjct: 285 DMVLHWE 291
>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 1 [Canis familiaris].
Length = 357
Score = 67.0 bits (162), Expect = 3e-11
Identities = 68/259 (26%), Positives = 105/259 (40%), Gaps = 10/259 (3%)
Frame = +2
Query: 197 YVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYN 376
++DD Q +DN N R PW Q D +EE + + + N + Y++
Sbjct: 49 WLDDVQIHAWDN--KNRTFVFRWPWAQG---DLSNEERMEADQLFYSNYIFYNLV--YHD 101
Query: 377 QSEAGS----HTLQSMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAA----DM 532
+Q GC L G G+ + AY G D I SW +
Sbjct: 102 HVSQWQLEYPFQVQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSR 158
Query: 533 AAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLG 712
A Q S + + E + G C + L++GK LQR P+ ++ PS G
Sbjct: 159 AQQASSVFNQYHEDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPG 218
Query: 713 -VTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSY 889
+ L C GFYPK + + W R G+ + Q + + P DGT+ +L V E
Sbjct: 219 RLQLVCHVSGFYPKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGL 277
Query: 890 TCHVQHEGL-QEPLTLRWD 943
+C V+H L + + L W+
Sbjct: 278 SCRVRHSSLGGQDMVLHWE 296
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,194,954
Number of extensions: 1171455
Number of successful extensions: 7256
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 7016
Number of HSP's successfully gapped: 26
Length of query: 362
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 258
Effective length of database: 15,407,560
Effective search space: 3975150480
Effective search space used: 3975150480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000415
(1088 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 454 e-128
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 451 e-127
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 436 e-122
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 436 e-122
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 436 e-122
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 430 e-120
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 421 e-118
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 409 e-114
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 409 e-114
Alignment gi|NP_001091948.1| HLA class I histocompatibility antigen, alph... 243 2e-64
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 454 bits (1167), Expect = e-128
Identities = 218/322 (67%), Positives = 250/322 (77%), Gaps = 2/322 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF+T+VSRP RG+ RFIAVGYVDDTQFVRFD+ A + RMEPR PWI+QEG +YWD+
Sbjct: 27 HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQ 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETR VK +QT V L TLRGYYNQSEAGSHT+Q M+GC +G DG L GYRQDAYDG D
Sbjct: 87 ETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAADMAAQI+KRKWEAA AE R+YL G CVE LRRYLE GK+TLQR
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRT 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPKTH+T HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ + A
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAV 326
Query: 1025 I--VIWKKTPSGEKGGNYTQAA 1084
+ V+W++ S KGG+YTQAA
Sbjct: 327 VAAVMWRRKSSDRKGGSYTQAA 348
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 451 bits (1159), Expect = e-127
Identities = 214/322 (66%), Positives = 250/322 (77%), Gaps = 2/322 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF+T+VSRP RG+ RFIAVGYVDDTQFVRFD+ A + +MEPR PWI+QEG +YWD+
Sbjct: 27 HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQ 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETR +K ++QT L TLRGYYNQSE GSHT+Q M+GC +GPDG L GYRQDAYDG D
Sbjct: 87 ETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAADMAAQI+KRKWEA AAE R YL+G CV+ LRRYLE GK+TLQR
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRT 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPKTH+T HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ + A
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAV 326
Query: 1025 I--VIWKKTPSGEKGGNYTQAA 1084
+ V+W++ S KGG+YTQAA
Sbjct: 327 VAAVMWRRKSSDRKGGSYTQAA 348
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 436 bits (1122), Expect = e-122
Identities = 213/322 (66%), Positives = 246/322 (76%), Gaps = 2/322 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YFYT+VSRP RG+ RFI+VGYVDDTQFVRFD+ A +PR EPR PWI+QEG +YWD
Sbjct: 27 HSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDR 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
T+ K AQT L LRGYYNQSEAGSHTLQSM+GC +GPDG LL G+ Q AYDG D
Sbjct: 87 NTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDLRSWTAAD AAQI++RKWEAA AE R+YL+G CVE LRRYLE GKD L+RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERA 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPKTHVT HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GD TFQ
Sbjct: 207 DPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P+ A
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAV 326
Query: 1025 I--VIWKKTPSGEKGGNYTQAA 1084
+ V+ ++ SG KGG+Y+QAA
Sbjct: 327 VAAVMCRRKSSGGKGGSYSQAA 348
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 436 bits (1122), Expect = e-122
Identities = 218/349 (62%), Positives = 252/349 (72%), Gaps = 3/349 (0%)
Frame = +2
Query: 47 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
+R+M P HS+ YF TAVSRP RG+ RFI+VGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 227 DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
D+ A +PR EPR PW++QEG +YWD ET+ K AQ V L LRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 407 SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
M+GC LGPDG LL GY Q AYDG DYIALNEDLRSWTAAD AAQI++RK EAA AAE
Sbjct: 121 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 587 RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 767 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 947 -AQPXXXXXXXXXXXXXXXXXXXXXAGI--VIWKKTPSGEKGGNYTQAA 1084
+QP A + ++ ++ SG KGG+ +QAA
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAA 349
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 436 bits (1122), Expect = e-122
Identities = 219/349 (62%), Positives = 252/349 (72%), Gaps = 3/349 (0%)
Frame = +2
Query: 47 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
+R+M P HS+ YF TAVSRP RG+ RFI+VGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 227 DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
D+ A +PR EPR PW++QEG +YWD ET+K K AQ V L LRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 407 SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
M GC LGPDG LL GY Q AYDG DYIALNEDLRSWTAAD AAQI++RK EAA AAE
Sbjct: 121 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 587 RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 767 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 947 -AQPXXXXXXXXXXXXXXXXXXXXXAGI--VIWKKTPSGEKGGNYTQAA 1084
+QP A + ++ ++ SG KGG+ +QAA
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAA 349
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
sapiens].
Length = 358
Score = 430 bits (1106), Expect = e-120
Identities = 207/321 (64%), Positives = 237/321 (73%), Gaps = 2/321 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YF+T+VSRP RG+ RFI+VGYVDDTQFVRFDN A +PRM PR PW++QEG +YWD
Sbjct: 24 HSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDR 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETR +D AQ + V L TLRGYYNQSEAGSHTLQ M GC LGPDG L GY Q AYDG D
Sbjct: 84 ETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
Y+ LNEDLRSWTA D AAQIS++K A AEH R+YL+ CVE L +YLE GK+TL
Sbjct: 144 YLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHL 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
EPPKTHVT HP SD TLRCWALGFYP EI+LTWQ++G+ +QD ELVETRP+GDGTFQ
Sbjct: 204 EPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP GEEQ YTCHVQHEGL EP+TLRW PA A
Sbjct: 264 KWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAV 323
Query: 1025 I--VIWKKTPSGEKGGNYTQA 1081
+ VIW+K SG KGG+Y++A
Sbjct: 324 VAAVIWRKKSSGGKGGSYSKA 344
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
[Homo sapiens].
Length = 338
Score = 421 bits (1081), Expect = e-118
Identities = 200/272 (73%), Positives = 223/272 (81%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF AVSRP RG+ RFIA+GYVDDTQFVRFD+ + PRMEPR PW++QEG +YW+E
Sbjct: 27 HSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYWEE 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ETR K +AQT + L TLRGYYNQSEA SHTLQ M GC LG DG LL GY Q AYDG D
Sbjct: 87 ETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDGKD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
Y+ALNEDLRSWTAAD AAQISKRK EAA+ AE R+YL+G CVE L RYLE GK+ LQRA
Sbjct: 147 YLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRA 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPKTHVT HP D TLRCWALGFYP EI LTWQR+G+DQ+QD+ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 940
KWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 409 bits (1052), Expect = e-114
Identities = 201/322 (62%), Positives = 233/322 (72%), Gaps = 2/322 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YF TAVSRP RG+ R+IAV YVDDTQF+RFD+ A PRMEPR PW++QEG YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
T K NAQT V L L YNQSEAGSHTLQ M GC +GPDG LL GY Q AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YI+LNEDLRSWTAAD AQI++R +EA + AE +R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PAQPXXXXXXXXXXXXXXXXXXXXX 1018
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323
Query: 1019 AGIVIWKKTPSGEKGGNYTQAA 1084
V+W+K S G+Y+QAA
Sbjct: 324 VAAVMWRKKSSDRNRGSYSQAA 345
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 409 bits (1052), Expect = e-114
Identities = 201/322 (62%), Positives = 233/322 (72%), Gaps = 2/322 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YF TAVSRP RG+ R+IAV YVDDTQF+RFD+ A PRMEPR PW++QEG YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
T K NAQT V L L YNQSEAGSHTLQ M GC +GPDG LL GY Q AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YI+LNEDLRSWTAAD AQI++R +EA + AE +R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PAQPXXXXXXXXXXXXXXXXXXXXX 1018
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323
Query: 1019 AGIVIWKKTPSGEKGGNYTQAA 1084
V+W+K S G+Y+QAA
Sbjct: 324 VAAVMWRKKSSDRNRGSYSQAA 345
>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
precursor [Homo sapiens].
Length = 254
Score = 243 bits (621), Expect = 2e-64
Identities = 121/181 (66%), Positives = 139/181 (76%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL YF TAVSRP RG+ R+IAV YVDDTQF+RFD+ A PRMEPR PW++QEG YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
T K NAQT V L L YNQSEAGSHTLQ M GC +GPDG LL GY Q AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YI+LNEDLRSWTAAD AQI++R +EA + AE +R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 665 E 667
E
Sbjct: 204 E 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,139,004
Number of extensions: 1127413
Number of successful extensions: 6694
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 6536
Number of HSP's successfully gapped: 76
Length of query: 362
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 258
Effective length of database: 14,868,908
Effective search space: 3836178264
Effective search space used: 3836178264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000415
(1088 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp... 408 e-114
Alignment gi|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus ... 407 e-114
Alignment gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al... 403 e-112
Alignment gi|XP_003086104.1| PREDICTED: h-2 class I histocompatibility an... 401 e-112
Alignment gi|XP_003086103.1| PREDICTED: h-2 class I histocompatibility an... 401 e-112
Alignment gi|XP_001473590.1| PREDICTED: h-2 class I histocompatibility an... 401 e-112
Alignment gi|XP_001473611.1| PREDICTED: h-2 class I histocompatibility an... 401 e-112
Alignment gi|XP_003086102.1| PREDICTED: h-2 class I histocompatibility an... 400 e-112
Alignment gi|XP_979787.3| PREDICTED: h-2 class I histocompatibility antig... 397 e-111
Alignment gi|XP_003085179.1| PREDICTED: h-2 class I histocompatibility an... 397 e-110
>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
[Mus musculus].
Length = 325
Score = 408 bits (1048), Expect = e-114
Identities = 186/274 (67%), Positives = 226/274 (82%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF T+VSRP G+ RFI VGYVDDTQFVRFD+ A PRMEPR PW++QEG +YW+
Sbjct: 27 HSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYWER 86
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ET++ K N Q++ V L TL GYYNQSE+GSHT+Q M+GC +G DG L GY Q AYDG D
Sbjct: 87 ETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRD 146
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDL++WTAAD+AA I++RKWE A AAE++R+YL+ CVE L RYLE+GK+TL R
Sbjct: 147 YIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRT 206
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPKTHVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 266
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 267 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 300
>ref|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus musculus].
Length = 354
Score = 407 bits (1047), Expect = e-114
Identities = 188/275 (68%), Positives = 223/275 (81%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PH LSYFYT+VSRP G+ RFI+VGYVD+T+FVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 51 PHLLSYFYTSVSRPGLGEPRFISVGYVDNTEFVRFDSDAENPRYEPRAPWMEQEGPEYWE 110
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
ET+K K N Q + V L TL YYNQS GSHT+Q + GC +G DG LL GY+Q AYDG
Sbjct: 111 RETQKAKGNEQIFRVNLRTLLSYYNQSAGGSHTIQVISGCEVGSDGRLLRGYQQFAYDGR 170
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDL++WTAADMAAQI++RKWE A A E ++YL+G CV+SLRRYLE+GK+TL R
Sbjct: 171 DYIALNEDLKTWTAADMAAQITRRKWEQAGATEKSKAYLEGACVQSLRRYLELGKETLLR 230
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
+PPK HVT H SD VTLRCWALGFYP I LTWQ G++ +QDMELVETRPSGDGTF
Sbjct: 231 TDPPKAHVTCHHRSDGDVTLRCWALGFYPANIILTWQLNGEELTQDMELVETRPSGDGTF 290
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 291 QKWASVVVPLGKEQNYTCHVHHEGLPEPLTLRWEP 325
>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
[Mus musculus].
Length = 357
Score = 403 bits (1035), Expect = e-112
Identities = 190/275 (69%), Positives = 219/275 (79%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YF TAVSRP G+ RFI VGYVDDTQFVRFD+ A NPRMEPR WI+QEG +YW+
Sbjct: 22 PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
ET K +D + + V L TL GYYNQS SHTLQ M+GC +GPDG LL GY Q+AYDG
Sbjct: 82 RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYI+LNEDLRSWTA D+A+QISK K EA D A R+YLQG CVE L RYL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
++PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+P
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEP 296
>ref|XP_003086104.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like [Mus musculus].
Length = 370
Score = 401 bits (1031), Expect = e-112
Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YF TAVSRP G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 25 PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 84
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D LL GY+Q AYDG
Sbjct: 85 EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 144
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDL++WTAAD AA I++RKWE A AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 145 DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 204
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
+ PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDGTF
Sbjct: 205 TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 264
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW P+
Sbjct: 265 QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 324
Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
V+ + +G KG NY A G
Sbjct: 325 VVAFVMKMRRNTGGKGVNYALAPG 348
>ref|XP_003086103.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like [Mus musculus].
Length = 380
Score = 401 bits (1031), Expect = e-112
Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YF TAVSRP G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 35 PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 94
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D LL GY+Q AYDG
Sbjct: 95 EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 154
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDL++WTAAD AA I++RKWE A AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 155 DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 214
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
+ PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDGTF
Sbjct: 215 TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 274
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW P+
Sbjct: 275 QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 334
Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
V+ + +G KG NY A G
Sbjct: 335 VVAFVMKMRRNTGGKGVNYALAPG 358
>ref|XP_001473590.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like isoform 1 [Mus musculus].
Length = 385
Score = 401 bits (1031), Expect = e-112
Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YF TAVSRP G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 40 PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 99
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D LL GY+Q AYDG
Sbjct: 100 EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 159
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDL++WTAAD AA I++RKWE A AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 160 DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 219
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
+ PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDGTF
Sbjct: 220 TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 279
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW P+
Sbjct: 280 QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 339
Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
V+ + +G KG NY A G
Sbjct: 340 VVAFVMKMRRNTGGKGVNYALAPG 363
>ref|XP_001473611.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like isoform 2 [Mus musculus].
Length = 368
Score = 401 bits (1031), Expect = e-112
Identities = 193/324 (59%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YF TAVSRP G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 23 PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D LL GY+Q AYDG
Sbjct: 83 EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDL++WTAAD AA I++RKWE A AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 143 DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
+ PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDGTF
Sbjct: 203 TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW--DPAQPXXXXXXXXXXXXXXXXXXXX 1015
QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW P+
Sbjct: 263 QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRWKLPPSTVSNTVIIAVLVVLGAAIVTGA 322
Query: 1016 XAGIVIWKKTPSGEKGGNYTQAAG 1087
V+ + +G KG NY A G
Sbjct: 323 VVAFVMKMRRNTGGKGVNYALAPG 346
>ref|XP_003086102.1| PREDICTED: h-2 class I histocompatibility antigen, K-W28 alpha
chain-like [Mus musculus].
Length = 370
Score = 400 bits (1028), Expect = e-112
Identities = 184/273 (67%), Positives = 221/273 (80%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YF TAVSRP G+ RFIAVGYVDDTQFVRFD+ A NPR EPR PW++QEG +YW+
Sbjct: 23 PHSLRYFVTAVSRPGLGEPRFIAVGYVDDTQFVRFDSDADNPRFEPRAPWMEQEGPEYWE 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
E+T++ K + Q + V L T + YYNQS+ GSHT Q MFGC +G D LL GY+Q AYDG
Sbjct: 83 EQTQRAKSDEQWFRVSLRTAQRYYNQSKGGSHTFQRMFGCDVGSDWRLLRGYQQFAYDGR 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDL++WTAAD AA I++RKWE A AE++R+YL+G CVE LRRYLE+G +TL R
Sbjct: 143 DYIALNEDLKTWTAADTAALITRRKWEQAGDAEYYRAYLEGECVEWLRRYLELGNETLLR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
+ PK HVT HP S + VTLRCWALGFYP +I+LTWQ G+D ++DMELVETRP+GDGTF
Sbjct: 203 TDSPKAHVTYHPRSQVDVTLRCWALGFYPADITLTWQLNGEDLTEDMELVETRPAGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 940
QKWAA+VVP G+EQ+YTCHV H+GL EPLTLRW
Sbjct: 263 QKWAAVVVPLGKEQNYTCHVHHKGLPEPLTLRW 295
>ref|XP_979787.3| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain
isoform 7 [Mus musculus].
Length = 379
Score = 397 bits (1021), Expect = e-111
Identities = 189/321 (58%), Positives = 234/321 (72%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF TA+SRP + RFI+VGYVDDTQFVRFD A NPR EPR PW++ EG++YW+
Sbjct: 24 HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ET+ K N Q++ L T + YYNQSE G HT Q +FGC +G DG LL GY Q AYDG D
Sbjct: 84 ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDL +WTAAD+AA I++RKWE A AAEH+++YL+G CVESLRRYL++GK+TL R
Sbjct: 144 YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW P +
Sbjct: 264 KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKESPSHQPMAVLVVLGAVIIIGAMVSF 323
Query: 1025 IVIWKKTPSGEKGGNYTQAAG 1087
++ ++T G KGG+Y A G
Sbjct: 324 VLKSRRTIGG-KGGDYAPAGG 343
>ref|XP_003085179.1| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
[Mus musculus].
Length = 388
Score = 397 bits (1019), Expect = e-110
Identities = 191/329 (58%), Positives = 234/329 (71%), Gaps = 8/329 (2%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF TA+SRP + RFI+VGYVDDTQFVRFD A NPR EPR PW++ EG++YW+
Sbjct: 24 HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ET+ K N Q++ L T + YYNQSE G HT Q +FGC +G DG LL GY Q AYDG D
Sbjct: 84 ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YIALNEDL +WTAAD+AA I++RKWE A AAEH+++YL+G CVESLRRYL++GK+TL R
Sbjct: 144 YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW +P A
Sbjct: 264 KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKEKPPPSTDSNMVIMAPMAVLVVLGAV 323
Query: 1025 IVIW--------KKTPSGEKGGNYTQAAG 1087
I+I + G KGG+Y A G
Sbjct: 324 IIIGAMVSFVLKSRRTIGGKGGDYAPAGG 352
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,446,693
Number of extensions: 920199
Number of successful extensions: 5211
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 5083
Number of HSP's successfully gapped: 136
Length of query: 362
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 259
Effective length of database: 12,523,851
Effective search space: 3243677409
Effective search space used: 3243677409
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000415
(1088 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a... 624 e-179
Alignment gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa]. 571 e-163
Alignment gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa]. 555 e-158
Alignment gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a... 552 e-157
Alignment gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa]. 534 e-152
Alignment gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa]. 513 e-146
Alignment gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa]. 457 e-129
Alignment gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa]. 434 e-122
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 390 e-109
Alignment gi|XP_003361021.1| PREDICTED: class I histocompatibility antige... 256 2e-68
>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 624 bits (1609), Expect = e-179
Identities = 297/322 (92%), Positives = 300/322 (93%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA
Sbjct: 83 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQP A
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
G+VIW+KT SGEKGG+YTQAAG
Sbjct: 323 GVVIWRKTRSGEKGGSYTQAAG 344
>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
Length = 361
Score = 571 bits (1471), Expect = e-163
Identities = 274/322 (85%), Positives = 283/322 (87%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSLSYFYTAVSRPD GDSRFI VGYVDDTQFVRFD+ A NPRMEPR PWI++EGQDYWD
Sbjct: 23 PHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYWD 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
EETRKVK+ AQ V L TLRGYYNQSEAGSHTLQSMFGCYLGPDGLLL GYRQDAYDGA
Sbjct: 83 EETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDGA 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDLRSWTAAD AAQI+KRKWEAAD AE WRSYLQGLCVESLR YLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
A+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 ADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQP A
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
G+VIW+K SGEKGG+YTQAAG
Sbjct: 323 GVVIWRKKRSGEKGGSYTQAAG 344
>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
Length = 364
Score = 555 bits (1431), Expect = e-158
Identities = 270/347 (77%), Positives = 283/347 (81%)
Frame = +2
Query: 47 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 226
+R+ GP PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF
Sbjct: 1 MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60
Query: 227 DNYAPNPRMEPRVPWIQQEGQDYWDEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQ 406
D+ APNPRMEPR PWIQQEGQDYWD ETR V +AQT V L TLRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120
Query: 407 SMFGCYLGPDGLLLHGYRQDAYDGADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHW 586
M+GC +GPDGLLL GYRQDAYDGADYIALNEDLRSWTAAD AAQI+KRKWEAADAAE
Sbjct: 121 VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180
Query: 587 RSYLQGLCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 766
RSYLQGLCVE L++YLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181 RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240
Query: 767 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 946
WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300
Query: 947 AQPXXXXXXXXXXXXXXXXXXXXXAGIVIWKKTPSGEKGGNYTQAAG 1087
QP G+VIW+K SGEKGG+YTQAAG
Sbjct: 301 PQPPIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAG 347
>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 552 bits (1423), Expect = e-157
Identities = 265/322 (82%), Positives = 278/322 (86%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSLSYFYTAVSRPDRGDSRF VGYVDDTQFVRFD+ APN +MEPR WI+QEG +YWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYWD 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
ET+ K+ AQTY VGL TLRGYYNQSEAGSHTLQ M+GCYLGPDGLLL GYRQDAYDGA
Sbjct: 83 RETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDGA 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DY+ALNEDLRSWTAAD AAQI+KRKWEAAD AE RSYLQGLCVESLR+YLEMGKDTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q A
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQTPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
G+VIW+K SGEKGG+YTQAAG
Sbjct: 323 GVVIWRKKRSGEKGGSYTQAAG 344
>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
Length = 361
Score = 534 bits (1376), Expect = e-152
Identities = 255/322 (79%), Positives = 272/322 (84%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YF TAVSRPDRG RFI+VGYVDDTQFVRFD+ APNPRMEPR PWI+QEGQ+YWD
Sbjct: 23 PHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYWD 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
EETR +AQT+ V LN LRGYYNQSEAGSHTLQSM+GC +GPD L L GY QDAYDGA
Sbjct: 83 EETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDGA 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYIALNEDLRSWTAAD AAQI+KRKWEAAD AE RSYL+G CVE L++YL+MG +TLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP QP A
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
G+VIW+K GEKGG+YTQAAG
Sbjct: 323 GVVIWRKKRPGEKGGSYTQAAG 344
>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
Length = 361
Score = 513 bits (1320), Expect = e-146
Identities = 249/322 (77%), Positives = 267/322 (82%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSLSY +T+VSRP RG+ RFIAVG VDDT VRFD+ A PR EPR WI+QEG +YWD
Sbjct: 23 PHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYWD 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
EETR KDNAQT LNTLRGYYNQSEA SHT+QS+FGC +GPD LLL YRQDAYDGA
Sbjct: 83 EETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDGA 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DY+ALNEDLRSWTAAD AAQI+KRKWE A+ AE RSYLQGLCVE L++YLEMG+DTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ A
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQTPVPMVGIIVGLVLVLVAGAMVA 322
Query: 1022 GIVIWKKTPSGEKGGNYTQAAG 1087
G+VIW+ SGEKGG+YTQAAG
Sbjct: 323 GVVIWRLKRSGEKGGSYTQAAG 344
>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
Length = 401
Score = 457 bits (1175), Expect = e-129
Identities = 221/320 (69%), Positives = 243/320 (75%)
Frame = +2
Query: 122 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 301
PHSL YFYTAVSRP R D RF VGYVDDTQFVRFD+ APNPR EPR PW++ EG + D
Sbjct: 23 PHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCD 82
Query: 302 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 481
TR KD +Q + V LN LRGYYNQSEAGSHT Q + GCY+ DG LL GY Q AYDGA
Sbjct: 83 RNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGA 142
Query: 482 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
DYI LNEDLRSWTA MAAQI++RKWE AE R+YL+ CV+SL RYL GK+TLQR
Sbjct: 143 DYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQR 202
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
++PPKTHVTRHPSSD VTLRCWALGFYPKEISLTWQ+EGQDQSQD+E+VETRPSGDGTF
Sbjct: 203 SDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTF 262
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXA 1021
+KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP QP
Sbjct: 263 RKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVTGAVVT 322
Query: 1022 GIVIWKKTPSGEKGGNYTQA 1081
G+VIW+K SG K Y QA
Sbjct: 323 GVVIWRKKCSGGKVRKYQQA 342
>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
Length = 355
Score = 434 bits (1117), Expect = e-122
Identities = 209/319 (65%), Positives = 245/319 (76%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HS+ YF+T VSRP G+ R++ VGYVDDTQFVRFD+ A NPRMEPR PW++QEGQ+YWDE
Sbjct: 22 HSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDE 81
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ET++VKD Q + L LRGYYNQSE GSHT Q +GC G G LH + Q AYDG D
Sbjct: 82 ETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDGED 141
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YI LNEDL SWTAADMAA++++RKW+ + A E ++SYL+G CVE LRRYLE G++ LQRA
Sbjct: 142 YITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRA 201
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
+PPK +VT HPSSD VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGTFQ
Sbjct: 202 DPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQ 261
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++
Sbjct: 262 KWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR----LSAITIVGIVAGLVLLGAVI 317
Query: 1025 IVIWKKTPSGEKGGNYTQA 1081
VIWKK SG K G+Y+QA
Sbjct: 318 TVIWKKRFSGRKRGSYSQA 336
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 390 bits (1002), Expect = e-109
Identities = 190/320 (59%), Positives = 226/320 (70%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL Y + VSRP G + +VG++DDTQFVRF + A NPR+EPR PW++QEG++YWD
Sbjct: 52 HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 111
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
+T K++++ L + G +N S++ SH+ + GC +G +G +L GY Q +YDG D
Sbjct: 112 QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDD 171
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQRA 664
YI LNEDLRSWTA AQI +RKWEA AE +R+YL+ CVE LR+YLE GKD LQRA
Sbjct: 172 YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 231
Query: 665 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 844
PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 232 VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 291
Query: 845 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPXXXXXXXXXXXXXXXXXXXXXAG 1024
KWAALVVP GEEQSYTC VQHEGLQEPLTLRW +P G
Sbjct: 292 KWAALVVPSGEEQSYTCQVQHEGLQEPLTLRW---EPPPLSLNLIMICIAVSVLVVTVLG 348
Query: 1025 IVIWKKTPSGEKGGNYTQAA 1084
VIW+K SG GNY QAA
Sbjct: 349 TVIWRKRNSGGNRGNYVQAA 368
>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
alpha chain-like [Sus scrofa].
Length = 374
Score = 256 bits (654), Expect = 2e-68
Identities = 127/274 (46%), Positives = 176/274 (64%), Gaps = 1/274 (0%)
Frame = +2
Query: 125 HSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWDE 304
HSL Y Y A+S P G +F+AVGYVDD F+R+D+ + EP+ PW+ YW++
Sbjct: 42 HSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYWEK 99
Query: 305 ETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGAD 484
ET+K + A+ V + T+ GYYNQS +G H+ Q MFGC + DG G+ Q +DG D
Sbjct: 100 ETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDGHST-GFWQFGFDGQD 157
Query: 485 YIALNEDLRSWTAADMAAQISKRKWEAADA-AEHWRSYLQGLCVESLRRYLEMGKDTLQR 661
+++L+ + SW +A+ A +KR WE AE+ ++Y++G+C+ SLR+YLE+G R
Sbjct: 158 HLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSR 217
Query: 662 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 841
EPP VT+H + D G TLRCWALGFYP++ISL+W ++ + E VETRPSGDGT+
Sbjct: 218 REPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDGTY 277
Query: 842 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 943
Q W A VP GEE YTCHVQH L LT+ W+
Sbjct: 278 QTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWE 311
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,155,803
Number of extensions: 734604
Number of successful extensions: 4397
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4307
Number of HSP's successfully gapped: 37
Length of query: 362
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 262
Effective length of database: 8,854,232
Effective search space: 2319808784
Effective search space used: 2319808784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000415
(1088 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 553 e-155
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22 170 1e-39
>Sscrofa_Chr07
|| Length = 134764511
Score = 553 bits (279), Expect = e-155
Identities = 279/279 (100%)
Strand = Plus / Minus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055
Score = 549 bits (277), Expect = e-153
Identities = 277/277 (100%)
Strand = Plus / Minus
Query: 389 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158
Query: 449 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098
Query: 509 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038
Query: 569 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978
Query: 629 tacctggagatggggaaggacacgctgcagcgcgcag 665
|||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941
Score = 539 bits (272), Expect = e-150
Identities = 272/272 (100%)
Strand = Plus / Minus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593
Query: 239 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533
Query: 299 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473
Query: 359 ctgcgcggctactacaaccagagcgaggccgg 390
||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441
Score = 537 bits (271), Expect = e-150
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600
Score = 521 bits (263), Expect = e-145
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219
Score = 513 bits (259), Expect = e-143
Identities = 275/279 (98%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996
Score = 513 bits (259), Expect = e-143
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123
Score = 450 bits (227), Expect = e-124
Identities = 266/279 (95%)
Strand = Plus / Plus
Query: 663 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 722
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121
Query: 723 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 782
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181
Query: 783 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 842
||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241
Query: 843 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301
Query: 903 agcacgagggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340
Score = 412 bits (208), Expect = e-112
Identities = 256/272 (94%)
Strand = Plus / Minus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108
Query: 239 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
|||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048
Query: 299 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
||||||||||||||||| | || |||||||||||||| | || ||||| |||||| |||
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988
Query: 359 ctgcgcggctactacaaccagagcgaggccgg 390
||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956
Score = 406 bits (205), Expect = e-110
Identities = 259/277 (93%)
Strand = Plus / Minus
Query: 389 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672
Query: 449 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612
Query: 509 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552
Query: 569 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
|||| |||||||| |||||||||||||||||| |||||||||||||||||||| |
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492
Query: 629 tacctggagatggggaaggacacgctgcagcgcgcag 665
|||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455
Score = 394 bits (199), Expect = e-107
Identities = 253/271 (93%)
Strand = Plus / Minus
Query: 671 ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 730
|||||| || |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541
Query: 731 gccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggaccag 790
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481
Query: 791 agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 850
||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421
Query: 851 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 910
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361
Query: 911 ggcctgcaggagcccctcaccctgagatggg 941
|||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330
Score = 381 bits (192), Expect = e-103
Identities = 252/272 (92%)
Strand = Plus / Minus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009
Query: 239 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
|| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949
Query: 299 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
||| |||||||||||| |||| || || |||||||||| || ||||| |||||| |||
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889
Query: 359 ctgcgcggctactacaaccagagcgaggccgg 390
||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857
Score = 377 bits (190), Expect = e-102
Identities = 253/274 (92%)
Strand = Plus / Plus
Query: 668 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 727
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630
Query: 728 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 787
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690
Query: 788 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 847
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750
Query: 848 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 907
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810
Query: 908 gagggcctgcaggagcccctcaccctgagatggg 941
||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844
Score = 339 bits (171), Expect = 2e-90
Identities = 247/271 (91%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 120 gtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctc 179
|||||||||||||||| |||||| ||||||||||||||||||||||||||||| | | |
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799
Query: 180 gcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccc 239
| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 24644798 g-ttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740
Query: 240 cgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattggg 299
||||||||||||||||||| |||| |||||||||| |||||||||||||||| |||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680
Query: 300 atgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacaccc 359
|||||||||||||||| | || || || ||||||||||| | ||||| |||||||| ||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620
Query: 360 tgcgcggctactacaaccagagcgaggccgg 390
|||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589
Score = 335 bits (169), Expect = 3e-89
Identities = 250/277 (90%)
Strand = Plus / Minus
Query: 389 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
||||||||||||||||||| || || |||||| || |||||||||||||||||||||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030
Query: 449 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
| | ||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970
Query: 509 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910
Query: 569 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
||| ||| ||||| |||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850
Query: 629 tacctggagatggggaaggacacgctgcagcgcgcag 665
||| ||||||||| |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813
Score = 327 bits (165), Expect = 7e-87
Identities = 249/277 (89%)
Strand = Plus / Minus
Query: 389 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102
Query: 449 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
| | ||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042
Query: 509 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982
Query: 569 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
||| ||||||||| |||||||||||||||||| ||||||||||| ||| | | |
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922
Query: 629 tacctggagatggggaaggacacgctgcagcgcgcag 665
||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885
Score = 319 bits (161), Expect = 2e-84
Identities = 248/277 (89%)
Strand = Plus / Minus
Query: 389 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231
Query: 449 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
| | ||||| ||| ||||| |||||||||||||||||| ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171
Query: 509 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111
Query: 569 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
||| ||||||||| |||||||||||||||||| ||||||||||| ||||| | |
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051
Query: 629 tacctggagatggggaaggacacgctgcagcgcgcag 665
||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014
Score = 311 bits (157), Expect = 4e-82
Identities = 247/277 (89%)
Strand = Plus / Minus
Query: 389 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 448
|||||||||||| |||||||||||| |||||| || |||| ||||||||||||||||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306
Query: 449 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 508
| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246
Query: 509 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 568
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186
Query: 569 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 628
|||||||||||||| ||| ||||||||| |||| |||||||| || ||||| | |
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126
Query: 629 tacctggagatggggaaggacacgctgcagcgcgcag 665
||||||||||||||||| ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089
Score = 266 bits (134), Expect = 2e-68
Identities = 188/206 (91%)
Strand = Plus / Minus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||| |
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
|| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430
Query: 239 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
|||||||||||||||||||| |||| ||||||||| |||||||||||||||||| ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370
Query: 299 gatgaggagacgcggaaagtcaagga 324
||| || |||||||||| ||||||||
Sbjct: 24707369 gatcagcagacgcggaatgtcaagga 24707344
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 1 ctctccacccacccggctctgctgagcttctccccagactccgaggctgaggatcatggg 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 24687146 ctctccacccacccggctctgctcagcttctccccagactccgaggctgaggatcatggg 24687087
Query: 61 gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24687086 gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 24687027
Query: 121 t 121
|
Sbjct: 24687026 t 24687026
Score = 226 bits (114), Expect = 2e-56
Identities = 231/270 (85%)
Strand = Plus / Minus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
||||||||||||||||||||| ||| |||| | ||||||||||| | ||||||||| |
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
||||||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662
Query: 239 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
||||| | | ||| |||||| |||| | | |||| |||||||||||| ||| ||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602
Query: 299 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
|| ||||||||||||| ||||||||||||||||||| | ||| | |||||||||
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542
Query: 359 ctgcgcggctactacaaccagagcgaggcc 388
||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512
Score = 224 bits (113), Expect = 8e-56
Identities = 119/121 (98%)
Strand = Plus / Minus
Query: 1 ctctccacccacccggctctgctgagcttctccccagactccgaggctgaggatcatggg 60
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 24751660 ctctccacccacccggctctgctcagcttctccccagaccccgaggctgaggatcatggg 24751601
Query: 61 gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751600 gcctggagccctcttcctgctgctgtcggggaccctggccctgaccgggacccaggcggg 24751541
Query: 121 t 121
|
Sbjct: 24751540 t 24751540
Score = 210 bits (106), Expect = 1e-51
Identities = 230/270 (85%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
||||||||||||||||||||| ||| |||| | ||||||||||| | ||||||||| |
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
||||||||||||||||||| |||||||||||||| ||| ||||||||||||| | |||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532
Query: 239 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
||||| | | ||| |||||| |||| | | |||| |||||||||||| ||| || |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473
Query: 299 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
|| ||||||||||||| ||||||||||||||||||| | ||| | |||||||||
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413
Query: 359 ctgcgcggctactacaaccagagcgaggcc 388
||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383
Score = 170 bits (86), Expect = 1e-39
Identities = 107/114 (93%)
Strand = Plus / Minus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878
Query: 1001 gtccctggaactgtggtggctggaattgtgatctggaagaaaaccccctcaggt 1054
||| ||||| |||||||||||||| |||||||||||| ||| || | |||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824
Score = 145 bits (73), Expect = 6e-32
Identities = 91/97 (93%)
Strand = Plus / Minus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392
Query: 1001 gtccctggaactgtggtggctggaattgtgatctgga 1037
||| ||||| | |||||||||||| ||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctgga 24749355
Score = 141 bits (71), Expect = 9e-31
Identities = 83/87 (95%)
Strand = Plus / Minus
Query: 25 agcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgct 84
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 24659070 agcttctccccagactccgcggctgaggatcatggggccccgagccctcttcctgctgct 24659011
Query: 85 gtcggggaccctggccctgaccgggac 111
||||||| |||||||||||||||||||
Sbjct: 24659010 gtcgggggccctggccctgaccgggac 24658984
Score = 141 bits (71), Expect = 9e-31
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 434 gacgggctcctcctccacgggtacagacaggacgcctacgacggcgccgattacatcgcc 493
||||||| |||||||| ||||||||| ||| |||||| |||||||| |||||||||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997
Query: 494 ctgaacgaggacctgcgctcctggaccgcggcggacatggcggctcagatc 544
||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatc 27615048
Score = 137 bits (69), Expect = 1e-29
Identities = 90/97 (92%)
Strand = Plus / Minus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946
Query: 1001 gtccctggaactgtggtggctggaattgtgatctgga 1037
||| ||||| | ||||||||||| |||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctgga 24721909
Score = 137 bits (69), Expect = 1e-29
Identities = 156/185 (84%)
Strand = Plus / Minus
Query: 125 cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctcgcttc 184
|||||| |||| |||||| |||| | |||||||||||||| || |||||| | || | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407
Query: 185 atcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccccgaat 244
| | |||||||| ||||||||||||||||||||||||||||||| | | || | ||||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347
Query: 245 ccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgggatgag 304
||| |||||||||| |||| ||||||| | |||||||||||||||| ||||||||||||
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287
Query: 305 gagac 309
|||||
Sbjct: 27210286 gagac 27210282
Score = 137 bits (69), Expect = 1e-29
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517
Query: 1001 gtccctggaactgtggtggctggaattgtgatctgga 1037
||| ||||| | |||||| ||||| ||||||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctgga 27616554
Score = 137 bits (69), Expect = 1e-29
Identities = 156/185 (84%)
Strand = Plus / Minus
Query: 125 cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctcgcttc 184
|||||| |||| |||||| |||| | |||||||||||||| || |||||| | || | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933
Query: 185 atcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccccgaat 244
| | |||||||| ||||||||||||||||||||||||||||||| | | || | ||||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873
Query: 245 ccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgggatgag 304
||| |||||||||| |||| ||||||| | |||||||||||||||| ||||||||||||
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813
Query: 305 gagac 309
|||||
Sbjct: 27629812 gagac 27629808
Score = 129 bits (65), Expect = 3e-27
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806
Query: 1001 gtccctggaactgtggtggctggaattgtgatctgga 1037
||| ||||| | ||||||||||| ||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctgga 24603843
Score = 129 bits (65), Expect = 3e-27
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042
Query: 1001 gtccctggaactgtggtggctggaattgtgatctgga 1037
|| ||||| | |||||||||||| ||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctgga 24643005
Score = 129 bits (65), Expect = 3e-27
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730
Query: 1001 gtccctggaactgtggtggctggaattgtgatctgga 1037
||| ||||| | ||||||||||| ||||||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctgga 24705693
Score = 127 bits (64), Expect = 1e-26
Identities = 76/80 (95%)
Strand = Plus / Minus
Query: 26 gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 85
||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 24645270 gcttctctccagactccgaggctgaggatcatggggccccgagccctcttcttgctgctg 24645211
Query: 86 tcggggaccctggccctgac 105
||||||||||||||||||||
Sbjct: 24645210 tcggggaccctggccctgac 24645191
Score = 123 bits (62), Expect = 2e-25
Identities = 80/86 (93%)
Strand = Plus / Minus
Query: 26 gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 85
|||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||
Sbjct: 24724195 gcttctccccagactccgcggctgaggatcatggggccccgaggcctcttcctgctgctc 24724136
Query: 86 tcggggaccctggccctgaccgggac 111
|||||| |||||||||||||||||||
Sbjct: 24724135 tcgggggccctggccctgaccgggac 24724110
Score = 119 bits (60), Expect = 3e-24
Identities = 108/124 (87%)
Strand = Plus / Plus
Query: 124 ccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactctcgctt 183
|||||||||||| || |||||||||||||||||||||||| |||| |||| | ||||
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356
Query: 184 catcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgccccgaa 243
||| |||||||||||||||||||||||||| || || ||||||||| | ||||||||||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416
Query: 244 tccg 247
||||
Sbjct: 24620417 tccg 24620420
Score = 119 bits (60), Expect = 3e-24
Identities = 81/88 (92%)
Strand = Plus / Minus
Query: 950 cagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctggtccctgga 1009
||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 26675472 cagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtcgctgga 26675413
Query: 1010 actgtggtggctggaattgtgatctgga 1037
| ||||||||||| ||||||||||||
Sbjct: 26675412 gccatggtggctggagttgtgatctgga 26675385
Score = 113 bits (57), Expect = 2e-22
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 941 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 1000
||||||||||||||||| |||||||| |||| |||||||||||||||||| |||||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819
Query: 1001 gtccctggaactgtggtggctggaattgtgatctgga 1037
||| ||||| | ||||| ||||| ||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctgga 24656782
Score = 111 bits (56), Expect = 8e-22
Identities = 86/96 (89%)
Strand = Plus / Minus
Query: 26 gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 85
|||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 24707970 gcttctccccagacaaagaggctaaggatcatggggcctggagcccttgtcctgctgctg 24707911
Query: 86 tcggggaccctggccctgaccgggacccaggcgggt 121
|| ||| |||||||||||||||||||| |||||||
Sbjct: 24707910 tccggggccctggccctgaccgggacctgggcgggt 24707875
Score = 103 bits (52), Expect = 2e-19
Identities = 217/272 (79%)
Strand = Plus / Plus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
||||||||||||||||| ||||||||||| ||||||||||| || || |||| |
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 238
|||||| || ||||||||| || |||||||||||||||||||||||||||| | | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568
Query: 239 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 298
||||||||| || |||||| ||| |||||| | ||| |||||| | ||| |||||
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628
Query: 299 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 358
||| | | || || | |||||||| | |||||| || | |||| ||||||| |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688
Query: 359 ctgcgcggctactacaaccagagcgaggccgg 390
||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720
Score = 81.8 bits (41), Expect = 7e-13
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 465 acgcctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcgg 524
||||||||||||||| ||||||||| | |||||||||||||| | |||||||| || |
Sbjct: 27209855 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27209796
Query: 525 cggacatggcggctcagatctccaagcgcaagtggga 561
||||||||||||||| | || | |||||||||||||
Sbjct: 27209795 cggacatggcggctcgggtcacacagcgcaagtggga 27209759
Score = 81.8 bits (41), Expect = 7e-13
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 201 tggacgacacgcagttcgtgcggttcgacaactacgccccgaatccgcggatggagcctc 260
||||||||||||||||||| |||||| || | | ||| ||||||| || |||||||||
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343
Query: 261 gggtgccgtggatacagcaggaggggcaggactattgggat 301
||| ||||||||| |||||||||||| ||| |||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggat 27603384
Score = 81.8 bits (41), Expect = 7e-13
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 465 acgcctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcgg 524
||||||||||||||| ||||||||| | |||||||||||||| | |||||||| || |
Sbjct: 27629381 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27629322
Query: 525 cggacatggcggctcagatctccaagcgcaagtggga 561
||||||||||||||| | || | |||||||||||||
Sbjct: 27629321 cggacatggcggctcgggtcacacagcgcaagtggga 27629285
Score = 79.8 bits (40), Expect = 3e-12
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 468 cctacgacggcgccgattacatcgccctgaacgaggacctgcgctcctggaccgcg 523
|||||||||||| ||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 27603797 cctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1046 ccctcaggtgaaaaaggagggaactacactcaggctgc 1083
|||||||||||||||||||||| |||||||||||||||
Sbjct: 24604267 ccctcaggtgaaaaaggagggagctacactcaggctgc 24604304
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 607 gtgtgtggagtcgctccgcagatacctggagatggggaaggacacgctgcagcgcgcag 665
||||||||||| |||||||| ||||| |||| |||||||||| ||||||||||||||
Sbjct: 27603936 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 80 ctgctgtcggggaccctggccctgaccgggacccaggcgggt 121
|||||||||||| |||||||||||||||||||| |||||||
Sbjct: 24627347 ctgctgtcgggggccctggccctgaccgggacctgggcgggt 24627306
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1050 caggtgaaaaaggagggaactacactcaggctgc 1083
|||||||||||||||||| |||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgc 24642528
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1050 caggtgaaaaaggagggaactacactcaggctgc 1083
|||||||||||||||||| |||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgc 24684361
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 1050 caggtgaaaaaggagggaactacactcaggctgc 1083
|||||||||||||||||| |||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgc 24748860
>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
Length = 107
Score = 170 bits (86), Expect = 1e-39
Identities = 101/106 (95%)
Strand = Plus / Plus
Query: 119 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 178
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct: 2 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61
Query: 179 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 224
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,413,880
Number of extensions: 262
Number of successful extensions: 262
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 59
Length of query: 1088
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1067
Effective length of database: 2,808,413,156
Effective search space: 2996576837452
Effective search space used: 2996576837452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)