Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000419
(1053 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776612.1| osteopontin precursor [Bos taurus]. 138 1e-35
>ref|NP_776612.1| osteopontin precursor [Bos taurus].
Length = 278
Score = 112 bits (281), Expect(2) = 1e-35
Identities = 65/122 (53%), Positives = 76/122 (62%)
Frame = +2
Query: 548 NDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVAS 727
NDGRGDSV YGL+S+SKKFRRS Q DATEED TSH+ESEE PK
Sbjct: 149 NDGRGDSVAYGLKSRSKKFRRSNVQSPDATEEDFTSHIESEEMHDAPK------------ 196
Query: 728 DLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEFTA 907
+TSQ D S ET S E SKE T K D N+HSN+IESQENS++SQEF +
Sbjct: 197 ----------KTSQLTDHSKETNSSELSKELTPKAKD-KNKHSNLIESQENSKLSQEFHS 245
Query: 908 MK 913
++
Sbjct: 246 LE 247
Score = 56.2 bits (134), Expect(2) = 1e-35
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +1
Query: 901 HSHEDQLVPDSKSEEDKHLKLRVSHELESASSEIN 1005
HS ED+L D KSEEDKHLK+R+SHEL+SASSE+N
Sbjct: 244 HSLEDKLDLDHKSEEDKHLKIRISHELDSASSEVN 278
Score = 138 bits (347), Expect = 9e-33
Identities = 70/85 (82%), Positives = 74/85 (87%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MRIAVI FCL G ASALPVK T+SGSSEEK L+NKY DAVA LKPDPSQKQTFL PQN+
Sbjct: 1 MRIAVICFCLLGIASALPVKPTSSGSSEEKQLNNKYPDAVAIWLKPDPSQKQTFLTPQNS 60
Query: 278 ISSEETDDFKQETLPSKSNESPEQT 352
+SSEETDD KQ TLPSKSNESPEQT
Sbjct: 61 VSSEETDDNKQNTLPSKSNESPEQT 85
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,741,642
Number of extensions: 1000017
Number of successful extensions: 3044
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3021
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000419
(1053 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1... 120 5e-37
>ref|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1 [Canis familiaris].
Length = 326
Score = 120 bits (301), Expect(2) = 5e-37
Identities = 63/119 (52%), Positives = 82/119 (68%)
Frame = +2
Query: 551 DGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVASD 730
DGRGDSV YGLRSKSKK + E Q D+TEED TS V+S + A+L+++ + SD
Sbjct: 169 DGRGDSVAYGLRSKSKKSHKYEVQYPDSTEEDFTSLVKSASMEDDFNAVLLSRTVRGTSD 228
Query: 731 LDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEFTA 907
DS KDSQETSQ DD S+ET+ ++ S+EY ++ D SN HS+ I SQENS+VS E +
Sbjct: 229 RDSHAKDSQETSQLDDHSMETKGRKHSQEYKLRASDESNMHSHEIGSQENSEVSSELVS 287
Score = 53.1 bits (126), Expect(2) = 5e-37
Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
Frame = +1
Query: 904 SHEDQLVPDSKSEE-DKHLKLRVSHELESASSEIN 1005
SHE +L+ DSKSEE DKHLK VSHEL+SASSEIN
Sbjct: 292 SHEKELIVDSKSEEEDKHLKFHVSHELDSASSEIN 326
Score = 89.7 bits (221), Expect = 4e-18
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Frame = +2
Query: 92 ITMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQ 271
+TMRIAVI FCL G A A+P+K +SGSSEEK L NKY AVAT LKPDPSQKQTFLA Q
Sbjct: 40 LTMRIAVICFCLLGIAYAIPIKHADSGSSEEKQLYNKYPGAVATWLKPDPSQKQTFLALQ 99
Query: 272 --NTISSEETDDFKQE 313
++ S+E DD ++
Sbjct: 100 TFSSKSNESHDDVDED 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,758,300
Number of extensions: 941841
Number of successful extensions: 3392
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3389
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000419
(1053 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035147.1| osteopontin isoform a precursor [Homo sapien... 147 2e-46
Alignment gi|NP_000573.1| osteopontin isoform b precursor [Homo sapiens]. 147 2e-46
Alignment gi|NP_001035149.1| osteopontin isoform c precursor [Homo sapien... 147 2e-46
>ref|NP_001035147.1| osteopontin isoform a precursor [Homo sapiens].
Length = 314
Score = 147 bits (372), Expect(2) = 2e-46
Identities = 79/120 (65%), Positives = 93/120 (77%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 154 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 213
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD DS+ KDS ETSQ DD+S ET S +QS+ Y K D SNEHS+VI+SQE S+VS+EF
Sbjct: 214 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREF 273
Score = 57.8 bits (138), Expect(2) = 2e-46
Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Frame = +1
Query: 901 HSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
HSHED LV D KS EEDKHLK R+SHEL+SASSE+N
Sbjct: 279 HSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN 314
Score = 125 bits (314), Expect = 7e-29
Identities = 63/81 (77%), Positives = 67/81 (82%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MRIAVI FCL G A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ LAPQN
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA 60
Query: 278 ISSEETDDFKQETLPSKSNES 340
+SSEET+DFKQETLPSKSNES
Sbjct: 61 VSSEETNDFKQETLPSKSNES 81
>ref|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].
Length = 300
Score = 147 bits (372), Expect(2) = 2e-46
Identities = 79/120 (65%), Positives = 93/120 (77%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 140 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 199
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD DS+ KDS ETSQ DD+S ET S +QS+ Y K D SNEHS+VI+SQE S+VS+EF
Sbjct: 200 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREF 259
Score = 57.8 bits (138), Expect(2) = 2e-46
Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Frame = +1
Query: 901 HSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
HSHED LV D KS EEDKHLK R+SHEL+SASSE+N
Sbjct: 265 HSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN 300
Score = 92.8 bits (229), Expect = 5e-19
Identities = 52/81 (64%), Positives = 54/81 (66%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MRIAVI FCL G A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ LAPQ
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ-- 58
Query: 278 ISSEETDDFKQETLPSKSNES 340
TLPSKSNES
Sbjct: 59 ------------TLPSKSNES 67
>ref|NP_001035149.1| osteopontin isoform c precursor [Homo sapiens].
Length = 287
Score = 147 bits (372), Expect(2) = 2e-46
Identities = 79/120 (65%), Positives = 93/120 (77%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 127 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 186
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD DS+ KDS ETSQ DD+S ET S +QS+ Y K D SNEHS+VI+SQE S+VS+EF
Sbjct: 187 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREF 246
Score = 57.8 bits (138), Expect(2) = 2e-46
Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
Frame = +1
Query: 901 HSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
HSHED LV D KS EEDKHLK R+SHEL+SASSE+N
Sbjct: 252 HSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN 287
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/81 (53%), Positives = 47/81 (58%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MRIAVI FCL G A+PVKQ +SGSSEEK QN
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEK---------------------------QNA 33
Query: 278 ISSEETDDFKQETLPSKSNES 340
+SSEET+DFKQETLPSKSNES
Sbjct: 34 VSSEETNDFKQETLPSKSNES 54
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,086,252
Number of extensions: 926422
Number of successful extensions: 3093
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3079
Number of HSP's successfully gapped: 9
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000419
(1053 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculu... 118 1e-29
Alignment gi|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculu... 115 1e-29
Alignment gi|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculu... 116 1e-29
Alignment gi|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus]. 114 1e-29
Alignment gi|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculu... 114 1e-29
>ref|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculus].
Length = 311
Score = 96.3 bits (238), Expect(2) = 1e-29
Identities = 58/124 (46%), Positives = 79/124 (63%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 156 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 215
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ +S+ S E
Sbjct: 216 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 270
Query: 902 TAMK 913
+ K
Sbjct: 271 QSHK 274
Score = 52.4 bits (124), Expect(2) = 1e-29
Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +1
Query: 895 RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
+ HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 274 KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 311
Score = 118 bits (295), Expect = 9e-27
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +2
Query: 95 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 274
TMR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ LAPQN
Sbjct: 16 TMRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQN 75
Query: 275 TISSEETDDFKQETLPSKSNES 340
+SSEE DDFKQETLPS SNES
Sbjct: 76 AVSSEEKDDFKQETLPSNSNES 97
>ref|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculus].
Length = 310
Score = 96.3 bits (238), Expect(2) = 1e-29
Identities = 58/124 (46%), Positives = 79/124 (63%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 155 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 214
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ +S+ S E
Sbjct: 215 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 269
Query: 902 TAMK 913
+ K
Sbjct: 270 QSHK 273
Score = 52.4 bits (124), Expect(2) = 1e-29
Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +1
Query: 895 RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
+ HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 273 KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 310
Score = 115 bits (289), Expect = 4e-26
Identities = 60/82 (73%), Positives = 67/82 (81%)
Frame = +2
Query: 95 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 274
TMR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 16 TMRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQN 74
Query: 275 TISSEETDDFKQETLPSKSNES 340
+SSEE DDFKQETLPS SNES
Sbjct: 75 AVSSEEKDDFKQETLPSNSNES 96
>ref|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculus].
Length = 295
Score = 96.3 bits (238), Expect(2) = 1e-29
Identities = 58/124 (46%), Positives = 79/124 (63%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 140 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 199
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ +S+ S E
Sbjct: 200 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 254
Query: 902 TAMK 913
+ K
Sbjct: 255 QSHK 258
Score = 52.4 bits (124), Expect(2) = 1e-29
Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +1
Query: 895 RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
+ HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 258 KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 295
Score = 116 bits (290), Expect = 3e-26
Identities = 58/81 (71%), Positives = 66/81 (81%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQNA 60
Query: 278 ISSEETDDFKQETLPSKSNES 340
+SSEE DDFKQETLPS SNES
Sbjct: 61 VSSEEKDDFKQETLPSNSNES 81
>ref|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].
Length = 294
Score = 96.3 bits (238), Expect(2) = 1e-29
Identities = 58/124 (46%), Positives = 79/124 (63%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ +S+ S E
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 253
Query: 902 TAMK 913
+ K
Sbjct: 254 QSHK 257
Score = 52.4 bits (124), Expect(2) = 1e-29
Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +1
Query: 895 RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
+ HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 257 KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 294
Score = 114 bits (284), Expect = 2e-25
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59
Query: 278 ISSEETDDFKQETLPSKSNES 340
+SSEE DDFKQETLPS SNES
Sbjct: 60 VSSEEKDDFKQETLPSNSNES 80
>ref|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculus].
Length = 294
Score = 96.3 bits (238), Expect(2) = 1e-29
Identities = 58/124 (46%), Positives = 79/124 (63%)
Frame = +2
Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198
Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ +S+ S E
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 253
Query: 902 TAMK 913
+ K
Sbjct: 254 QSHK 257
Score = 52.4 bits (124), Expect(2) = 1e-29
Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
Frame = +1
Query: 895 RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
+ HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 257 KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 294
Score = 114 bits (284), Expect = 2e-25
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59
Query: 278 ISSEETDDFKQETLPSKSNES 340
+SSEE DDFKQETLPS SNES
Sbjct: 60 VSSEEKDDFKQETLPSNSNES 80
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,684,791
Number of extensions: 779326
Number of successful extensions: 2586
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2557
Number of HSP's successfully gapped: 15
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000419
(1053 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999188.1| osteopontin precursor [Sus scrofa]. 382 e-121
>ref|NP_999188.1| osteopontin precursor [Sus scrofa].
Length = 303
Score = 382 bits (981), Expect(2) = e-121
Identities = 206/268 (76%), Positives = 207/268 (77%)
Frame = +2
Query: 98 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT
Sbjct: 1 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 60
Query: 278 ISSEETDDFKQETLPSKSNESPEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXX 457
ISSEETDDFKQETLPSKSNESPEQT R
Sbjct: 61 ISSEETDDFKQETLPSKSNESPEQTDDVDDDDDEDHVDSRDTDSEEADHADDADRSDESH 120
Query: 458 XXXXXXXLXXXXXXXXXXXXXXXXXXXGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 637
L GDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT
Sbjct: 121 HSDESDELVTDFPTDTPATDVTPAVPTGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 180
Query: 638 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 817
EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE
Sbjct: 181 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 240
Query: 818 YTIKTYDGSNEHSNVIESQENSQVSQEF 901
YTIKTYDGSNEHSNVIESQEN +VSQEF
Sbjct: 241 YTIKTYDGSNEHSNVIESQENPKVSQEF 268
Score = 71.6 bits (174), Expect(2) = e-121
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = +1
Query: 901 HSHEDQLVPDSKSEEDKHLKLRVSHELESASSEIN 1005
HSHED+LVPDSKSEEDKHLKLRVSHELESASSEIN
Sbjct: 269 HSHEDKLVPDSKSEEDKHLKLRVSHELESASSEIN 303
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,741,074
Number of extensions: 757688
Number of successful extensions: 1960
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1958
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000419
(1053 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 741 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 741 bits (374), Expect = 0.0
Identities = 413/422 (97%), Gaps = 3/422 (0%)
Strand = Plus / Minus
Query: 620 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308748 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 140308689
Query: 680 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308688 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 140308629
Query: 740 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308628 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 140308569
Query: 800 caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308568 caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 140308509
Query: 860 gtgattgagagtcaggaaaattcccaagtcagccaagaatt-cacagccatgaagaccag 918
||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||
Sbjct: 140308508 gtgattgagagtcaggaaaatcccaaagtcagccaagaattccacagccatgaagacaag 140308449
Query: 919 ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgagtttctcatgaa 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308448 ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgagtttctcatgaa 140308389
Query: 979 ttagagagtgcgtcttctgagatcaactgaaaaaaaatac-atgtcttactttgccttta 1037
||||||||||||||||||||||||||||| | | |||||| |||||||||||||| ||||
Sbjct: 140308388 ttagagagtgcgtcttctgagatcaactg-agagaaatacaatgtcttactttgctttta 140308330
Query: 1038 gt 1039
||
Sbjct: 140308329 gt 140308328
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 440 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309599 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 140309540
Query: 500 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309539 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 140309480
Query: 560 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309479 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 140309420
Query: 620 cag 622
|||
Sbjct: 140309419 cag 140309417
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1 agcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140315415 agcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgga 140315356
Query: 61 ctcttcgcggggctgcagaccaagg 85
|||||||||||||||||||||||||
Sbjct: 140315355 ctcttcgcggggctgcagaccaagg 140315331
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 190 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140311218 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 140311159
Query: 250 gcagactttcctagcgccacag 271
||||||||||||||||||||||
Sbjct: 140311158 gcagactttcctagcgccacag 140311137
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 83 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140314186 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 140314127
Query: 143 gcccttccagt 153
|||||||||||
Sbjct: 140314126 gcccttccagt 140314116
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 269 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 313
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140310853 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 140310809
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 312 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 352
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309727 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 140309687
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 152 gttaaacagactaattctggcagctcggaggaaaagctg 190
|||||||||||||||||||||||||||||||||||||||
Sbjct: 140314005 gttaaacagactaattctggcagctcggaggaaaagctg 140313967
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,272,832
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 8
Length of query: 1053
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1032
Effective length of database: 2,808,413,156
Effective search space: 2898282376992
Effective search space used: 2898282376992
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)