Animal-Genome cDNA 20110601C-000419


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000419
         (1053 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776612.1| osteopontin precursor [Bos taurus].                  138   1e-35

>ref|NP_776612.1| osteopontin precursor [Bos taurus].
          Length = 278

 Score =  112 bits (281), Expect(2) = 1e-35
 Identities = 65/122 (53%), Positives = 76/122 (62%)
 Frame = +2

Query: 548 NDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVAS 727
           NDGRGDSV YGL+S+SKKFRRS  Q  DATEED TSH+ESEE    PK            
Sbjct: 149 NDGRGDSVAYGLKSRSKKFRRSNVQSPDATEEDFTSHIESEEMHDAPK------------ 196

Query: 728 DLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEFTA 907
                     +TSQ  D S ET S E SKE T K  D  N+HSN+IESQENS++SQEF +
Sbjct: 197 ----------KTSQLTDHSKETNSSELSKELTPKAKD-KNKHSNLIESQENSKLSQEFHS 245

Query: 908 MK 913
           ++
Sbjct: 246 LE 247



 Score = 56.2 bits (134), Expect(2) = 1e-35
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +1

Query: 901  HSHEDQLVPDSKSEEDKHLKLRVSHELESASSEIN 1005
            HS ED+L  D KSEEDKHLK+R+SHEL+SASSE+N
Sbjct: 244  HSLEDKLDLDHKSEEDKHLKIRISHELDSASSEVN 278



 Score =  138 bits (347), Expect = 9e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MRIAVI FCL G ASALPVK T+SGSSEEK L+NKY DAVA  LKPDPSQKQTFL PQN+
Sbjct: 1   MRIAVICFCLLGIASALPVKPTSSGSSEEKQLNNKYPDAVAIWLKPDPSQKQTFLTPQNS 60

Query: 278 ISSEETDDFKQETLPSKSNESPEQT 352
           +SSEETDD KQ TLPSKSNESPEQT
Sbjct: 61  VSSEETDDNKQNTLPSKSNESPEQT 85


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,741,642
Number of extensions: 1000017
Number of successful extensions: 3044
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3021
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,273,310
Effective search space: 3539780880
Effective search space used: 3539780880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000419
         (1053 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1...   120   5e-37

>ref|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1 [Canis familiaris].
          Length = 326

 Score =  120 bits (301), Expect(2) = 5e-37
 Identities = 63/119 (52%), Positives = 82/119 (68%)
 Frame = +2

Query: 551 DGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVASD 730
           DGRGDSV YGLRSKSKK  + E Q  D+TEED TS V+S   +    A+L+++ +   SD
Sbjct: 169 DGRGDSVAYGLRSKSKKSHKYEVQYPDSTEEDFTSLVKSASMEDDFNAVLLSRTVRGTSD 228

Query: 731 LDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEFTA 907
            DS  KDSQETSQ DD S+ET+ ++ S+EY ++  D SN HS+ I SQENS+VS E  +
Sbjct: 229 RDSHAKDSQETSQLDDHSMETKGRKHSQEYKLRASDESNMHSHEIGSQENSEVSSELVS 287



 Score = 53.1 bits (126), Expect(2) = 5e-37
 Identities = 27/35 (77%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
 Frame = +1

Query: 904  SHEDQLVPDSKSEE-DKHLKLRVSHELESASSEIN 1005
            SHE +L+ DSKSEE DKHLK  VSHEL+SASSEIN
Sbjct: 292  SHEKELIVDSKSEEEDKHLKFHVSHELDSASSEIN 326



 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
 Frame = +2

Query: 92  ITMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQ 271
           +TMRIAVI FCL G A A+P+K  +SGSSEEK L NKY  AVAT LKPDPSQKQTFLA Q
Sbjct: 40  LTMRIAVICFCLLGIAYAIPIKHADSGSSEEKQLYNKYPGAVATWLKPDPSQKQTFLALQ 99

Query: 272 --NTISSEETDDFKQE 313
             ++ S+E  DD  ++
Sbjct: 100 TFSSKSNESHDDVDED 115


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,758,300
Number of extensions: 941841
Number of successful extensions: 3392
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3389
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 247
Effective length of database: 15,407,560
Effective search space: 3805667320
Effective search space used: 3805667320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000419
         (1053 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035147.1| osteopontin isoform a precursor [Homo sapien...   147   2e-46
Alignment   gi|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].      147   2e-46
Alignment   gi|NP_001035149.1| osteopontin isoform c precursor [Homo sapien...   147   2e-46

>ref|NP_001035147.1| osteopontin isoform a precursor [Homo sapiens].
          Length = 314

 Score =  147 bits (372), Expect(2) = 2e-46
 Identities = 79/120 (65%), Positives = 93/120 (77%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 154 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 213

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  K  D SNEHS+VI+SQE S+VS+EF
Sbjct: 214 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREF 273



 Score = 57.8 bits (138), Expect(2) = 2e-46
 Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
 Frame = +1

Query: 901  HSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            HSHED LV D KS EEDKHLK R+SHEL+SASSE+N
Sbjct: 279  HSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN 314



 Score =  125 bits (314), Expect = 7e-29
 Identities = 63/81 (77%), Positives = 67/81 (82%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MRIAVI FCL G   A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ  LAPQN 
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA 60

Query: 278 ISSEETDDFKQETLPSKSNES 340
           +SSEET+DFKQETLPSKSNES
Sbjct: 61  VSSEETNDFKQETLPSKSNES 81


>ref|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].
          Length = 300

 Score =  147 bits (372), Expect(2) = 2e-46
 Identities = 79/120 (65%), Positives = 93/120 (77%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 140 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 199

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  K  D SNEHS+VI+SQE S+VS+EF
Sbjct: 200 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREF 259



 Score = 57.8 bits (138), Expect(2) = 2e-46
 Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
 Frame = +1

Query: 901  HSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            HSHED LV D KS EEDKHLK R+SHEL+SASSE+N
Sbjct: 265  HSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN 300



 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 52/81 (64%), Positives = 54/81 (66%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MRIAVI FCL G   A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ  LAPQ  
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ-- 58

Query: 278 ISSEETDDFKQETLPSKSNES 340
                       TLPSKSNES
Sbjct: 59  ------------TLPSKSNES 67


>ref|NP_001035149.1| osteopontin isoform c precursor [Homo sapiens].
          Length = 287

 Score =  147 bits (372), Expect(2) = 2e-46
 Identities = 79/120 (65%), Positives = 93/120 (77%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 127 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 186

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  K  D SNEHS+VI+SQE S+VS+EF
Sbjct: 187 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSREF 246



 Score = 57.8 bits (138), Expect(2) = 2e-46
 Identities = 28/36 (77%), Positives = 31/36 (86%), Gaps = 1/36 (2%)
 Frame = +1

Query: 901  HSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            HSHED LV D KS EEDKHLK R+SHEL+SASSE+N
Sbjct: 252  HSHEDMLVVDPKSKEEDKHLKFRISHELDSASSEVN 287



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 43/81 (53%), Positives = 47/81 (58%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MRIAVI FCL G   A+PVKQ +SGSSEEK                           QN 
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEK---------------------------QNA 33

Query: 278 ISSEETDDFKQETLPSKSNES 340
           +SSEET+DFKQETLPSKSNES
Sbjct: 34  VSSEETNDFKQETLPSKSNES 54


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,086,252
Number of extensions: 926422
Number of successful extensions: 3093
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3079
Number of HSP's successfully gapped: 9
Length of query: 351
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 248
Effective length of database: 14,901,872
Effective search space: 3695664256
Effective search space used: 3695664256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000419
         (1053 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculu...   118   1e-29
Alignment   gi|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculu...   115   1e-29
Alignment   gi|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculu...   116   1e-29
Alignment   gi|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].      114   1e-29
Alignment   gi|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculu...   114   1e-29

>ref|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculus].
          Length = 311

 Score = 96.3 bits (238), Expect(2) = 1e-29
 Identities = 58/124 (46%), Positives = 79/124 (63%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 156 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 215

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ +S+ S E 
Sbjct: 216 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 270

Query: 902 TAMK 913
            + K
Sbjct: 271 QSHK 274



 Score = 52.4 bits (124), Expect(2) = 1e-29
 Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +1

Query: 895  RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            + HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 274  KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 311



 Score =  118 bits (295), Expect = 9e-27
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 95  TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 274
           TMR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ  LAPQN
Sbjct: 16  TMRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQN 75

Query: 275 TISSEETDDFKQETLPSKSNES 340
            +SSEE DDFKQETLPS SNES
Sbjct: 76  AVSSEEKDDFKQETLPSNSNES 97


>ref|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculus].
          Length = 310

 Score = 96.3 bits (238), Expect(2) = 1e-29
 Identities = 58/124 (46%), Positives = 79/124 (63%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 155 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 214

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ +S+ S E 
Sbjct: 215 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 269

Query: 902 TAMK 913
            + K
Sbjct: 270 QSHK 273



 Score = 52.4 bits (124), Expect(2) = 1e-29
 Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +1

Query: 895  RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            + HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 273  KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 310



 Score =  115 bits (289), Expect = 4e-26
 Identities = 60/82 (73%), Positives = 67/82 (81%)
 Frame = +2

Query: 95  TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 274
           TMR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN
Sbjct: 16  TMRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQN 74

Query: 275 TISSEETDDFKQETLPSKSNES 340
            +SSEE DDFKQETLPS SNES
Sbjct: 75  AVSSEEKDDFKQETLPSNSNES 96


>ref|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculus].
          Length = 295

 Score = 96.3 bits (238), Expect(2) = 1e-29
 Identities = 58/124 (46%), Positives = 79/124 (63%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 140 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 199

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ +S+ S E 
Sbjct: 200 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 254

Query: 902 TAMK 913
            + K
Sbjct: 255 QSHK 258



 Score = 52.4 bits (124), Expect(2) = 1e-29
 Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +1

Query: 895  RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            + HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 258  KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 295



 Score =  116 bits (290), Expect = 3e-26
 Identities = 58/81 (71%), Positives = 66/81 (81%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQNA 60

Query: 278 ISSEETDDFKQETLPSKSNES 340
           +SSEE DDFKQETLPS SNES
Sbjct: 61  VSSEEKDDFKQETLPSNSNES 81


>ref|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].
          Length = 294

 Score = 96.3 bits (238), Expect(2) = 1e-29
 Identities = 58/124 (46%), Positives = 79/124 (63%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ +S+ S E 
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 253

Query: 902 TAMK 913
            + K
Sbjct: 254 QSHK 257



 Score = 52.4 bits (124), Expect(2) = 1e-29
 Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +1

Query: 895  RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            + HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 257  KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 294



 Score =  114 bits (284), Expect = 2e-25
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59

Query: 278 ISSEETDDFKQETLPSKSNES 340
           +SSEE DDFKQETLPS SNES
Sbjct: 60  VSSEEKDDFKQETLPSNSNES 80


>ref|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculus].
          Length = 294

 Score = 96.3 bits (238), Expect(2) = 1e-29
 Identities = 58/124 (46%), Positives = 79/124 (63%)
 Frame = +2

Query: 542 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 721
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198

Query: 722 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSNEHSNVIESQENSQVSQEF 901
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ +S+ S E 
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKASLEH 253

Query: 902 TAMK 913
            + K
Sbjct: 254 QSHK 257



 Score = 52.4 bits (124), Expect(2) = 1e-29
 Identities = 24/38 (63%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +1

Query: 895  RIHSHEDQLVPDSKS-EEDKHLKLRVSHELESASSEIN 1005
            + HSH+D+LV D KS E+D++LK R+SHELES+SSE+N
Sbjct: 257  KFHSHKDKLVLDPKSKEDDRYLKFRISHELESSSSEVN 294



 Score =  114 bits (284), Expect = 2e-25
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59

Query: 278 ISSEETDDFKQETLPSKSNES 340
           +SSEE DDFKQETLPS SNES
Sbjct: 60  VSSEEKDDFKQETLPSNSNES 80


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,684,791
Number of extensions: 779326
Number of successful extensions: 2586
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2557
Number of HSP's successfully gapped: 15
Length of query: 351
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 249
Effective length of database: 12,553,887
Effective search space: 3125917863
Effective search space used: 3125917863
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000419
         (1053 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999188.1| osteopontin precursor [Sus scrofa].                  382   e-121

>ref|NP_999188.1| osteopontin precursor [Sus scrofa].
          Length = 303

 Score =  382 bits (981), Expect(2) = e-121
 Identities = 206/268 (76%), Positives = 207/268 (77%)
 Frame = +2

Query: 98  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 277
           MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT
Sbjct: 1   MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 60

Query: 278 ISSEETDDFKQETLPSKSNESPEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXX 457
           ISSEETDDFKQETLPSKSNESPEQT                             R     
Sbjct: 61  ISSEETDDFKQETLPSKSNESPEQTDDVDDDDDEDHVDSRDTDSEEADHADDADRSDESH 120

Query: 458 XXXXXXXLXXXXXXXXXXXXXXXXXXXGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 637
                  L                   GDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT
Sbjct: 121 HSDESDELVTDFPTDTPATDVTPAVPTGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 180

Query: 638 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 817
           EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE
Sbjct: 181 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 240

Query: 818 YTIKTYDGSNEHSNVIESQENSQVSQEF 901
           YTIKTYDGSNEHSNVIESQEN +VSQEF
Sbjct: 241 YTIKTYDGSNEHSNVIESQENPKVSQEF 268



 Score = 71.6 bits (174), Expect(2) = e-121
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +1

Query: 901  HSHEDQLVPDSKSEEDKHLKLRVSHELESASSEIN 1005
            HSHED+LVPDSKSEEDKHLKLRVSHELESASSEIN
Sbjct: 269  HSHEDKLVPDSKSEEDKHLKLRVSHELESASSEIN 303


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,741,074
Number of extensions: 757688
Number of successful extensions: 1960
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1958
Number of HSP's successfully gapped: 3
Length of query: 351
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 251
Effective length of database: 8,854,232
Effective search space: 2222412232
Effective search space used: 2222412232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000419
         (1053 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         741   0.0  

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  741 bits (374), Expect = 0.0
 Identities = 413/422 (97%), Gaps = 3/422 (0%)
 Strand = Plus / Minus

                                                                             
Query: 620       cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 679
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308748 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 140308689

                                                                             
Query: 680       ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 739
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308688 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 140308629

                                                                             
Query: 740       caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 799
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308628 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 140308569

                                                                             
Query: 800       caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 859
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308568 caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 140308509

                                                                             
Query: 860       gtgattgagagtcaggaaaattcccaagtcagccaagaatt-cacagccatgaagaccag 918
                 ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||
Sbjct: 140308508 gtgattgagagtcaggaaaatcccaaagtcagccaagaattccacagccatgaagacaag 140308449

                                                                             
Query: 919       ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgagtttctcatgaa 978
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308448 ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgagtttctcatgaa 140308389

                                                                             
Query: 979       ttagagagtgcgtcttctgagatcaactgaaaaaaaatac-atgtcttactttgccttta 1037
                 ||||||||||||||||||||||||||||| | | |||||| |||||||||||||| ||||
Sbjct: 140308388 ttagagagtgcgtcttctgagatcaactg-agagaaatacaatgtcttactttgctttta 140308330

                   
Query: 1038      gt 1039
                 ||
Sbjct: 140308329 gt 140308328



 Score =  363 bits (183), Expect = 1e-97
 Identities = 183/183 (100%)
 Strand = Plus / Minus

                                                                             
Query: 440       cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 499
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309599 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 140309540

                                                                             
Query: 500       gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 559
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309539 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 140309480

                                                                             
Query: 560       ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 619
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309479 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 140309420

                    
Query: 620       cag 622
                 |||
Sbjct: 140309419 cag 140309417



 Score =  168 bits (85), Expect = 4e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         agcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgga 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140315415 agcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgga 140315356

                                          
Query: 61        ctcttcgcggggctgcagaccaagg 85
                 |||||||||||||||||||||||||
Sbjct: 140315355 ctcttcgcggggctgcagaccaagg 140315331



 Score =  163 bits (82), Expect = 2e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                             
Query: 190       gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 249
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140311218 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 140311159

                                       
Query: 250       gcagactttcctagcgccacag 271
                 ||||||||||||||||||||||
Sbjct: 140311158 gcagactttcctagcgccacag 140311137



 Score =  141 bits (71), Expect = 9e-31
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                             
Query: 83        aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 142
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140314186 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 140314127

                            
Query: 143       gcccttccagt 153
                 |||||||||||
Sbjct: 140314126 gcccttccagt 140314116



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                              
Query: 269       cagaatactatttcctcggaggaaacggacgacttcaaacaagag 313
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140310853 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 140310809



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                          
Query: 312       agaccctgccaagcaagtccaacgaaagccctgagcaaaca 352
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309727 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 140309687



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                        
Query: 152       gttaaacagactaattctggcagctcggaggaaaagctg 190
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 140314005 gttaaacagactaattctggcagctcggaggaaaagctg 140313967


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,272,832
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 8
Length of query: 1053
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1032
Effective length of database: 2,808,413,156
Effective search space: 2898282376992
Effective search space used: 2898282376992
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)