Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000439
(1052 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776612.1| osteopontin precursor [Bos taurus]. 138 9e-33
>ref|NP_776612.1| osteopontin precursor [Bos taurus].
Length = 278
Score = 138 bits (347), Expect = 9e-33
Identities = 70/85 (82%), Positives = 74/85 (87%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MRIAVI FCL G ASALPVK T+SGSSEEK L+NKY DAVA LKPDPSQKQTFL PQN+
Sbjct: 1 MRIAVICFCLLGIASALPVKPTSSGSSEEKQLNNKYPDAVAIWLKPDPSQKQTFLTPQNS 60
Query: 279 ISSEETDDFKQETLPSKSNESPEQT 353
+SSEETDD KQ TLPSKSNESPEQT
Sbjct: 61 VSSEETDDNKQNTLPSKSNESPEQT 85
Score = 101 bits (252), Expect(3) = 3e-29
Identities = 60/113 (53%), Positives = 67/113 (59%)
Frame = +3
Query: 549 NDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVAS 728
NDGRGDSV YGL+S+SKKFRRS Q DATEED TSH+ESEE PK
Sbjct: 149 NDGRGDSVAYGLKSRSKKFRRSNVQSPDATEEDFTSHIESEEMHDAPK------------ 196
Query: 729 DLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPK 887
+TSQ D S ET S E SKE T K D ++HSN+IESQEN K
Sbjct: 197 ----------KTSQLTDHSKETNSSELSKELTPKAKD-KNKHSNLIESQENSK 238
Score = 35.0 bits (79), Expect(3) = 3e-29
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2
Query: 881 SQVSQEFHSHEDKLVPDSKSEED 949
S++SQEFHS EDKL D KSEED
Sbjct: 237 SKLSQEFHSLEDKLDLDHKSEED 259
Score = 31.2 bits (69), Expect(3) = 3e-29
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK+R+SHEL SASSE+N
Sbjct: 262 LKIRISHELDSASSEVN 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,700,933
Number of extensions: 949559
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3261
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000439
(1052 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1... 110 8e-30
>ref|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1 [Canis familiaris].
Length = 326
Score = 110 bits (276), Expect(3) = 8e-30
Identities = 58/110 (52%), Positives = 76/110 (69%)
Frame = +3
Query: 552 DGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVASD 731
DGRGDSV YGLRSKSKK + E Q D+TEED TS V+S + A+L+++ + SD
Sbjct: 169 DGRGDSVAYGLRSKSKKSHKYEVQYPDSTEEDFTSLVKSASMEDDFNAVLLSRTVRGTSD 228
Query: 732 LDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQEN 881
DS KDSQETSQ DD S+ET+ ++ S+EY ++ D S+ HS+ I SQEN
Sbjct: 229 RDSHAKDSQETSQLDDHSMETKGRKHSQEYKLRASDESNMHSHEIGSQEN 278
Score = 30.0 bits (66), Expect(3) = 8e-30
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +1
Query: 937 ERRRQPLKLRVSHELKSASSEIN 1005
E + LK VSHEL SASSEIN
Sbjct: 304 EEEDKHLKFHVSHELDSASSEIN 326
Score = 28.9 bits (63), Expect(3) = 8e-30
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 869 ESGKSQVSQEFHSHEDKLVPDSKSEEDN 952
E VSQ SHE +L+ DSKSEE++
Sbjct: 280 EVSSELVSQLSQSHEKELIVDSKSEEED 307
Score = 89.7 bits (221), Expect = 4e-18
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Frame = +3
Query: 93 ITMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQ 272
+TMRIAVI FCL G A A+P+K +SGSSEEK L NKY AVAT LKPDPSQKQTFLA Q
Sbjct: 40 LTMRIAVICFCLLGIAYAIPIKHADSGSSEEKQLYNKYPGAVATWLKPDPSQKQTFLALQ 99
Query: 273 --NTISSEETDDFKQE 314
++ S+E DD ++
Sbjct: 100 TFSSKSNESHDDVDED 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,750,743
Number of extensions: 893885
Number of successful extensions: 3546
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3541
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000439
(1052 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035147.1| osteopontin isoform a precursor [Homo sapien... 138 3e-39
Alignment gi|NP_000573.1| osteopontin isoform b precursor [Homo sapiens]. 138 3e-39
Alignment gi|NP_001035149.1| osteopontin isoform c precursor [Homo sapien... 138 3e-39
>ref|NP_001035147.1| osteopontin isoform a precursor [Homo sapiens].
Length = 314
Score = 138 bits (347), Expect(3) = 3e-39
Identities = 74/118 (62%), Positives = 89/118 (75%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 154 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 213
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSAK 896
SD DS+ KDS ETSQ DD+S ET S +QS+ Y K D S+EHS+VI+SQE K ++
Sbjct: 214 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSR 271
Score = 33.1 bits (74), Expect(3) = 3e-39
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S EFHSHED LV D KS+E++
Sbjct: 275 SHEFHSHEDMLVVDPKSKEED 295
Score = 30.4 bits (67), Expect(3) = 3e-39
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL SASSE+N
Sbjct: 298 LKFRISHELDSASSEVN 314
Score = 125 bits (314), Expect = 7e-29
Identities = 63/81 (77%), Positives = 67/81 (82%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MRIAVI FCL G A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ LAPQN
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA 60
Query: 279 ISSEETDDFKQETLPSKSNES 341
+SSEET+DFKQETLPSKSNES
Sbjct: 61 VSSEETNDFKQETLPSKSNES 81
>ref|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].
Length = 300
Score = 138 bits (347), Expect(3) = 3e-39
Identities = 74/118 (62%), Positives = 89/118 (75%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 140 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 199
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSAK 896
SD DS+ KDS ETSQ DD+S ET S +QS+ Y K D S+EHS+VI+SQE K ++
Sbjct: 200 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSR 257
Score = 33.1 bits (74), Expect(3) = 3e-39
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S EFHSHED LV D KS+E++
Sbjct: 261 SHEFHSHEDMLVVDPKSKEED 281
Score = 30.4 bits (67), Expect(3) = 3e-39
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL SASSE+N
Sbjct: 284 LKFRISHELDSASSEVN 300
Score = 92.8 bits (229), Expect = 5e-19
Identities = 52/81 (64%), Positives = 54/81 (66%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MRIAVI FCL G A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ LAPQ
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ-- 58
Query: 279 ISSEETDDFKQETLPSKSNES 341
TLPSKSNES
Sbjct: 59 ------------TLPSKSNES 67
>ref|NP_001035149.1| osteopontin isoform c precursor [Homo sapiens].
Length = 287
Score = 138 bits (347), Expect(3) = 3e-39
Identities = 74/118 (62%), Positives = 89/118 (75%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 127 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 186
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSAK 896
SD DS+ KDS ETSQ DD+S ET S +QS+ Y K D S+EHS+VI+SQE K ++
Sbjct: 187 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSR 244
Score = 33.1 bits (74), Expect(3) = 3e-39
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S EFHSHED LV D KS+E++
Sbjct: 248 SHEFHSHEDMLVVDPKSKEED 268
Score = 30.4 bits (67), Expect(3) = 3e-39
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL SASSE+N
Sbjct: 271 LKFRISHELDSASSEVN 287
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/81 (53%), Positives = 47/81 (58%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MRIAVI FCL G A+PVKQ +SGSSEEK QN
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEK---------------------------QNA 33
Query: 279 ISSEETDDFKQETLPSKSNES 341
+SSEET+DFKQETLPSKSNES
Sbjct: 34 VSSEETNDFKQETLPSKSNES 54
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,105,372
Number of extensions: 879660
Number of successful extensions: 3307
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3292
Number of HSP's successfully gapped: 12
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000439
(1052 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculu... 118 9e-27
Alignment gi|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculu... 116 3e-26
Alignment gi|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculu... 115 4e-26
Alignment gi|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus]. 114 5e-26
Alignment gi|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculu... 114 5e-26
>ref|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculus].
Length = 311
Score = 118 bits (295), Expect = 9e-27
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +3
Query: 96 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 275
TMR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ LAPQN
Sbjct: 16 TMRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQN 75
Query: 276 TISSEETDDFKQETLPSKSNES 341
+SSEE DDFKQETLPS SNES
Sbjct: 76 AVSSEEKDDFKQETLPSNSNES 97
Score = 93.2 bits (230), Expect(3) = 5e-26
Identities = 55/117 (47%), Positives = 76/117 (64%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 156 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 215
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ + K++
Sbjct: 216 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 267
Score = 33.5 bits (75), Expect(3) = 5e-26
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S +FHSH+DKLV D KS+ED+
Sbjct: 272 SHKFHSHKDKLVLDPKSKEDD 292
Score = 30.0 bits (66), Expect(3) = 5e-26
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL+S+SSE+N
Sbjct: 295 LKFRISHELESSSSEVN 311
>ref|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculus].
Length = 295
Score = 116 bits (290), Expect = 3e-26
Identities = 58/81 (71%), Positives = 66/81 (81%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQNA 60
Query: 279 ISSEETDDFKQETLPSKSNES 341
+SSEE DDFKQETLPS SNES
Sbjct: 61 VSSEEKDDFKQETLPSNSNES 81
Score = 93.2 bits (230), Expect(3) = 5e-26
Identities = 55/117 (47%), Positives = 76/117 (64%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 140 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 199
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ + K++
Sbjct: 200 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 251
Score = 33.5 bits (75), Expect(3) = 5e-26
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S +FHSH+DKLV D KS+ED+
Sbjct: 256 SHKFHSHKDKLVLDPKSKEDD 276
Score = 30.0 bits (66), Expect(3) = 5e-26
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL+S+SSE+N
Sbjct: 279 LKFRISHELESSSSEVN 295
>ref|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculus].
Length = 310
Score = 115 bits (289), Expect = 4e-26
Identities = 60/82 (73%), Positives = 67/82 (81%)
Frame = +3
Query: 96 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 275
TMR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 16 TMRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQN 74
Query: 276 TISSEETDDFKQETLPSKSNES 341
+SSEE DDFKQETLPS SNES
Sbjct: 75 AVSSEEKDDFKQETLPSNSNES 96
Score = 93.2 bits (230), Expect(3) = 5e-26
Identities = 55/117 (47%), Positives = 76/117 (64%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 155 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 214
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ + K++
Sbjct: 215 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 266
Score = 33.5 bits (75), Expect(3) = 5e-26
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S +FHSH+DKLV D KS+ED+
Sbjct: 271 SHKFHSHKDKLVLDPKSKEDD 291
Score = 30.0 bits (66), Expect(3) = 5e-26
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL+S+SSE+N
Sbjct: 294 LKFRISHELESSSSEVN 310
>ref|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].
Length = 294
Score = 93.2 bits (230), Expect(3) = 5e-26
Identities = 55/117 (47%), Positives = 76/117 (64%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ + K++
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 250
Score = 33.5 bits (75), Expect(3) = 5e-26
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S +FHSH+DKLV D KS+ED+
Sbjct: 255 SHKFHSHKDKLVLDPKSKEDD 275
Score = 30.0 bits (66), Expect(3) = 5e-26
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL+S+SSE+N
Sbjct: 278 LKFRISHELESSSSEVN 294
Score = 114 bits (284), Expect = 2e-25
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59
Query: 279 ISSEETDDFKQETLPSKSNES 341
+SSEE DDFKQETLPS SNES
Sbjct: 60 VSSEEKDDFKQETLPSNSNES 80
>ref|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculus].
Length = 294
Score = 93.2 bits (230), Expect(3) = 5e-26
Identities = 55/117 (47%), Positives = 76/117 (64%)
Frame = +3
Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198
Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
SD D+ K S E+SQ D+ S+ET E SKE S + S+VI+SQ + K++
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 250
Score = 33.5 bits (75), Expect(3) = 5e-26
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
S +FHSH+DKLV D KS+ED+
Sbjct: 255 SHKFHSHKDKLVLDPKSKEDD 275
Score = 30.0 bits (66), Expect(3) = 5e-26
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LK R+SHEL+S+SSE+N
Sbjct: 278 LKFRISHELESSSSEVN 294
Score = 114 bits (284), Expect = 2e-25
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59
Query: 279 ISSEETDDFKQETLPSKSNES 341
+SSEE DDFKQETLPS SNES
Sbjct: 60 VSSEEKDDFKQETLPSNSNES 80
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,816,165
Number of extensions: 737990
Number of successful extensions: 2738
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 20
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000439
(1052 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999188.1| osteopontin precursor [Sus scrofa]. 375 e-115
>ref|NP_999188.1| osteopontin precursor [Sus scrofa].
Length = 303
Score = 375 bits (964), Expect(3) = e-115
Identities = 202/263 (76%), Positives = 203/263 (77%)
Frame = +3
Query: 99 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT
Sbjct: 1 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 60
Query: 279 ISSEETDDFKQETLPSKSNESPEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXX 458
ISSEETDDFKQETLPSKSNESPEQT R
Sbjct: 61 ISSEETDDFKQETLPSKSNESPEQTDDVDDDDDEDHVDSRDTDSEEADHADDADRSDESH 120
Query: 459 XXXXXXXLXXXXXXXXXXXXXXXXXXXGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 638
L GDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT
Sbjct: 121 HSDESDELVTDFPTDTPATDVTPAVPTGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 180
Query: 639 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 818
EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE
Sbjct: 181 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 240
Query: 819 YTIKTYDGSHEHSNVIESQENPK 887
YTIKTYDGS+EHSNVIESQENPK
Sbjct: 241 YTIKTYDGSNEHSNVIESQENPK 263
Score = 47.4 bits (111), Expect(3) = e-115
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +2
Query: 884 QVSQEFHSHEDKLVPDSKSEED 949
+VSQEFHSHEDKLVPDSKSEED
Sbjct: 263 KVSQEFHSHEDKLVPDSKSEED 284
Score = 33.5 bits (75), Expect(3) = e-115
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 955 LKLRVSHELKSASSEIN 1005
LKLRVSHEL+SASSEIN
Sbjct: 287 LKLRVSHELESASSEIN 303
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,072,596
Number of extensions: 725399
Number of successful extensions: 2050
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2042
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000439
(1052 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 747 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 747 bits (377), Expect = 0.0
Identities = 416/425 (97%), Gaps = 3/425 (0%)
Strand = Plus / Minus
Query: 621 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308748 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 140308689
Query: 681 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308688 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 140308629
Query: 741 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308628 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 140308569
Query: 801 caggagcagtccaaagaatacacgatcaagacctatgatgggagccatgagcattccaat 860
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 140308568 caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 140308509
Query: 861 gtgattgagagtcaggaaaatccc-aagtcagccaagaattccacagccatgaagacaag 919
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 140308508 gtgattgagagtcaggaaaatcccaaagtcagccaagaattccacagccatgaagacaag 140308449
Query: 920 ctggtcccagactctaagagcgaagaagac-aacccctgaaacttcgagtttctcatgaa 978
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 140308448 ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgagtttctcatgaa 140308389
Query: 979 ttaaagagtgcgtcttctgaaatcaactgcg-gaaaaacaatgtcttactttgcttttag 1037
||| |||||||||||||||| |||||||| | |||| |||||||||||||||||||||||
Sbjct: 140308388 ttagagagtgcgtcttctgagatcaactgagagaaatacaatgtcttactttgcttttag 140308329
Query: 1038 taaaa 1042
|||||
Sbjct: 140308328 taaaa 140308324
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 441 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309599 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 140309540
Query: 501 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309539 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 140309480
Query: 561 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309479 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 140309420
Query: 621 cag 623
|||
Sbjct: 140309419 cag 140309417
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1 cagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140315416 cagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgg 140315357
Query: 61 actcttcgcggggctgcagaccaagg 86
||||||||||||||||||||||||||
Sbjct: 140315356 actcttcgcggggctgcagaccaagg 140315331
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 191 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140311218 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 140311159
Query: 251 gcagactttcctagcgccacag 272
||||||||||||||||||||||
Sbjct: 140311158 gcagactttcctagcgccacag 140311137
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 84 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140314186 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 140314127
Query: 144 gcccttccagt 154
|||||||||||
Sbjct: 140314126 gcccttccagt 140314116
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 270 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 314
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140310853 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 140310809
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 313 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 353
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309727 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 140309687
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 153 gttaaacagactaattctggcagctcggaggaaaagctg 191
|||||||||||||||||||||||||||||||||||||||
Sbjct: 140314005 gttaaacagactaattctggcagctcggaggaaaagctg 140313967
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,174,297
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 8
Length of query: 1052
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1031
Effective length of database: 2,808,413,156
Effective search space: 2895473963836
Effective search space used: 2895473963836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)