Animal-Genome cDNA 20110601C-000439


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000439
         (1052 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776612.1| osteopontin precursor [Bos taurus].                  138   9e-33

>ref|NP_776612.1| osteopontin precursor [Bos taurus].
          Length = 278

 Score =  138 bits (347), Expect = 9e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MRIAVI FCL G ASALPVK T+SGSSEEK L+NKY DAVA  LKPDPSQKQTFL PQN+
Sbjct: 1   MRIAVICFCLLGIASALPVKPTSSGSSEEKQLNNKYPDAVAIWLKPDPSQKQTFLTPQNS 60

Query: 279 ISSEETDDFKQETLPSKSNESPEQT 353
           +SSEETDD KQ TLPSKSNESPEQT
Sbjct: 61  VSSEETDDNKQNTLPSKSNESPEQT 85



 Score =  101 bits (252), Expect(3) = 3e-29
 Identities = 60/113 (53%), Positives = 67/113 (59%)
 Frame = +3

Query: 549 NDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVAS 728
           NDGRGDSV YGL+S+SKKFRRS  Q  DATEED TSH+ESEE    PK            
Sbjct: 149 NDGRGDSVAYGLKSRSKKFRRSNVQSPDATEEDFTSHIESEEMHDAPK------------ 196

Query: 729 DLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPK 887
                     +TSQ  D S ET S E SKE T K  D  ++HSN+IESQEN K
Sbjct: 197 ----------KTSQLTDHSKETNSSELSKELTPKAKD-KNKHSNLIESQENSK 238



 Score = 35.0 bits (79), Expect(3) = 3e-29
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +2

Query: 881 SQVSQEFHSHEDKLVPDSKSEED 949
           S++SQEFHS EDKL  D KSEED
Sbjct: 237 SKLSQEFHSLEDKLDLDHKSEED 259



 Score = 31.2 bits (69), Expect(3) = 3e-29
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK+R+SHEL SASSE+N
Sbjct: 262  LKIRISHELDSASSEVN 278


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,700,933
Number of extensions: 949559
Number of successful extensions: 3287
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3261
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,273,310
Effective search space: 3525507570
Effective search space used: 3525507570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000439
         (1052 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1...   110   8e-30

>ref|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1 [Canis familiaris].
          Length = 326

 Score =  110 bits (276), Expect(3) = 8e-30
 Identities = 58/110 (52%), Positives = 76/110 (69%)
 Frame = +3

Query: 552 DGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVASD 731
           DGRGDSV YGLRSKSKK  + E Q  D+TEED TS V+S   +    A+L+++ +   SD
Sbjct: 169 DGRGDSVAYGLRSKSKKSHKYEVQYPDSTEEDFTSLVKSASMEDDFNAVLLSRTVRGTSD 228

Query: 732 LDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQEN 881
            DS  KDSQETSQ DD S+ET+ ++ S+EY ++  D S+ HS+ I SQEN
Sbjct: 229 RDSHAKDSQETSQLDDHSMETKGRKHSQEYKLRASDESNMHSHEIGSQEN 278



 Score = 30.0 bits (66), Expect(3) = 8e-30
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 937  ERRRQPLKLRVSHELKSASSEIN 1005
            E   + LK  VSHEL SASSEIN
Sbjct: 304  EEEDKHLKFHVSHELDSASSEIN 326



 Score = 28.9 bits (63), Expect(3) = 8e-30
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 869 ESGKSQVSQEFHSHEDKLVPDSKSEEDN 952
           E     VSQ   SHE +L+ DSKSEE++
Sbjct: 280 EVSSELVSQLSQSHEKELIVDSKSEEED 307



 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
 Frame = +3

Query: 93  ITMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQ 272
           +TMRIAVI FCL G A A+P+K  +SGSSEEK L NKY  AVAT LKPDPSQKQTFLA Q
Sbjct: 40  LTMRIAVICFCLLGIAYAIPIKHADSGSSEEKQLYNKYPGAVATWLKPDPSQKQTFLALQ 99

Query: 273 --NTISSEETDDFKQE 314
             ++ S+E  DD  ++
Sbjct: 100 TFSSKSNESHDDVDED 115


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,750,743
Number of extensions: 893885
Number of successful extensions: 3546
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3541
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 246
Effective length of database: 15,407,560
Effective search space: 3790259760
Effective search space used: 3790259760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000439
         (1052 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035147.1| osteopontin isoform a precursor [Homo sapien...   138   3e-39
Alignment   gi|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].      138   3e-39
Alignment   gi|NP_001035149.1| osteopontin isoform c precursor [Homo sapien...   138   3e-39

>ref|NP_001035147.1| osteopontin isoform a precursor [Homo sapiens].
          Length = 314

 Score =  138 bits (347), Expect(3) = 3e-39
 Identities = 74/118 (62%), Positives = 89/118 (75%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 154 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 213

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSAK 896
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  K  D S+EHS+VI+SQE  K ++
Sbjct: 214 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSR 271



 Score = 33.1 bits (74), Expect(3) = 3e-39
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S EFHSHED LV D KS+E++
Sbjct: 275 SHEFHSHEDMLVVDPKSKEED 295



 Score = 30.4 bits (67), Expect(3) = 3e-39
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL SASSE+N
Sbjct: 298  LKFRISHELDSASSEVN 314



 Score =  125 bits (314), Expect = 7e-29
 Identities = 63/81 (77%), Positives = 67/81 (82%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MRIAVI FCL G   A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ  LAPQN 
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA 60

Query: 279 ISSEETDDFKQETLPSKSNES 341
           +SSEET+DFKQETLPSKSNES
Sbjct: 61  VSSEETNDFKQETLPSKSNES 81


>ref|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].
          Length = 300

 Score =  138 bits (347), Expect(3) = 3e-39
 Identities = 74/118 (62%), Positives = 89/118 (75%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 140 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 199

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSAK 896
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  K  D S+EHS+VI+SQE  K ++
Sbjct: 200 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSR 257



 Score = 33.1 bits (74), Expect(3) = 3e-39
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S EFHSHED LV D KS+E++
Sbjct: 261 SHEFHSHEDMLVVDPKSKEED 281



 Score = 30.4 bits (67), Expect(3) = 3e-39
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL SASSE+N
Sbjct: 284  LKFRISHELDSASSEVN 300



 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 52/81 (64%), Positives = 54/81 (66%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MRIAVI FCL G   A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ  LAPQ  
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ-- 58

Query: 279 ISSEETDDFKQETLPSKSNES 341
                       TLPSKSNES
Sbjct: 59  ------------TLPSKSNES 67


>ref|NP_001035149.1| osteopontin isoform c precursor [Homo sapiens].
          Length = 287

 Score =  138 bits (347), Expect(3) = 3e-39
 Identities = 74/118 (62%), Positives = 89/118 (75%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 127 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 186

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSAK 896
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  K  D S+EHS+VI+SQE  K ++
Sbjct: 187 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHSDVIDSQELSKVSR 244



 Score = 33.1 bits (74), Expect(3) = 3e-39
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S EFHSHED LV D KS+E++
Sbjct: 248 SHEFHSHEDMLVVDPKSKEED 268



 Score = 30.4 bits (67), Expect(3) = 3e-39
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL SASSE+N
Sbjct: 271  LKFRISHELDSASSEVN 287



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 43/81 (53%), Positives = 47/81 (58%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MRIAVI FCL G   A+PVKQ +SGSSEEK                           QN 
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEK---------------------------QNA 33

Query: 279 ISSEETDDFKQETLPSKSNES 341
           +SSEET+DFKQETLPSKSNES
Sbjct: 34  VSSEETNDFKQETLPSKSNES 54


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,105,372
Number of extensions: 879660
Number of successful extensions: 3307
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3292
Number of HSP's successfully gapped: 12
Length of query: 350
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 247
Effective length of database: 14,901,872
Effective search space: 3680762384
Effective search space used: 3680762384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000439
         (1052 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculu...   118   9e-27
Alignment   gi|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculu...   116   3e-26
Alignment   gi|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculu...   115   4e-26
Alignment   gi|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].      114   5e-26
Alignment   gi|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculu...   114   5e-26

>ref|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculus].
          Length = 311

 Score =  118 bits (295), Expect = 9e-27
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +3

Query: 96  TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 275
           TMR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ  LAPQN
Sbjct: 16  TMRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQN 75

Query: 276 TISSEETDDFKQETLPSKSNES 341
            +SSEE DDFKQETLPS SNES
Sbjct: 76  AVSSEEKDDFKQETLPSNSNES 97



 Score = 93.2 bits (230), Expect(3) = 5e-26
 Identities = 55/117 (47%), Positives = 76/117 (64%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 156 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 215

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ + K++
Sbjct: 216 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 267



 Score = 33.5 bits (75), Expect(3) = 5e-26
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S +FHSH+DKLV D KS+ED+
Sbjct: 272 SHKFHSHKDKLVLDPKSKEDD 292



 Score = 30.0 bits (66), Expect(3) = 5e-26
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL+S+SSE+N
Sbjct: 295  LKFRISHELESSSSEVN 311


>ref|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculus].
          Length = 295

 Score =  116 bits (290), Expect = 3e-26
 Identities = 58/81 (71%), Positives = 66/81 (81%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQNA 60

Query: 279 ISSEETDDFKQETLPSKSNES 341
           +SSEE DDFKQETLPS SNES
Sbjct: 61  VSSEEKDDFKQETLPSNSNES 81



 Score = 93.2 bits (230), Expect(3) = 5e-26
 Identities = 55/117 (47%), Positives = 76/117 (64%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 140 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 199

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ + K++
Sbjct: 200 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 251



 Score = 33.5 bits (75), Expect(3) = 5e-26
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S +FHSH+DKLV D KS+ED+
Sbjct: 256 SHKFHSHKDKLVLDPKSKEDD 276



 Score = 30.0 bits (66), Expect(3) = 5e-26
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL+S+SSE+N
Sbjct: 279  LKFRISHELESSSSEVN 295


>ref|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculus].
          Length = 310

 Score =  115 bits (289), Expect = 4e-26
 Identities = 60/82 (73%), Positives = 67/82 (81%)
 Frame = +3

Query: 96  TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 275
           TMR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN
Sbjct: 16  TMRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQN 74

Query: 276 TISSEETDDFKQETLPSKSNES 341
            +SSEE DDFKQETLPS SNES
Sbjct: 75  AVSSEEKDDFKQETLPSNSNES 96



 Score = 93.2 bits (230), Expect(3) = 5e-26
 Identities = 55/117 (47%), Positives = 76/117 (64%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 155 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 214

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ + K++
Sbjct: 215 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 266



 Score = 33.5 bits (75), Expect(3) = 5e-26
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S +FHSH+DKLV D KS+ED+
Sbjct: 271 SHKFHSHKDKLVLDPKSKEDD 291



 Score = 30.0 bits (66), Expect(3) = 5e-26
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL+S+SSE+N
Sbjct: 294  LKFRISHELESSSSEVN 310


>ref|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].
          Length = 294

 Score = 93.2 bits (230), Expect(3) = 5e-26
 Identities = 55/117 (47%), Positives = 76/117 (64%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ + K++
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 250



 Score = 33.5 bits (75), Expect(3) = 5e-26
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S +FHSH+DKLV D KS+ED+
Sbjct: 255 SHKFHSHKDKLVLDPKSKEDD 275



 Score = 30.0 bits (66), Expect(3) = 5e-26
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL+S+SSE+N
Sbjct: 278  LKFRISHELESSSSEVN 294



 Score =  114 bits (284), Expect = 2e-25
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59

Query: 279 ISSEETDDFKQETLPSKSNES 341
           +SSEE DDFKQETLPS SNES
Sbjct: 60  VSSEEKDDFKQETLPSNSNES 80


>ref|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculus].
          Length = 294

 Score = 93.2 bits (230), Expect(3) = 5e-26
 Identities = 55/117 (47%), Positives = 76/117 (64%)
 Frame = +3

Query: 543 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 722
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198

Query: 723 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIKTYDGSHEHSNVIESQENPKSA 893
            SD D+  K S E+SQ D+ S+ET   E SKE        S + S+VI+SQ + K++
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE-----SQESADQSDVIDSQASSKAS 250



 Score = 33.5 bits (75), Expect(3) = 5e-26
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 890 SQEFHSHEDKLVPDSKSEEDN 952
           S +FHSH+DKLV D KS+ED+
Sbjct: 255 SHKFHSHKDKLVLDPKSKEDD 275



 Score = 30.0 bits (66), Expect(3) = 5e-26
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LK R+SHEL+S+SSE+N
Sbjct: 278  LKFRISHELESSSSEVN 294



 Score =  114 bits (284), Expect = 2e-25
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59

Query: 279 ISSEETDDFKQETLPSKSNES 341
           +SSEE DDFKQETLPS SNES
Sbjct: 60  VSSEEKDDFKQETLPSNSNES 80


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,816,165
Number of extensions: 737990
Number of successful extensions: 2738
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 20
Length of query: 350
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 248
Effective length of database: 12,553,887
Effective search space: 3113363976
Effective search space used: 3113363976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000439
         (1052 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999188.1| osteopontin precursor [Sus scrofa].                  375   e-115

>ref|NP_999188.1| osteopontin precursor [Sus scrofa].
          Length = 303

 Score =  375 bits (964), Expect(3) = e-115
 Identities = 202/263 (76%), Positives = 203/263 (77%)
 Frame = +3

Query: 99  MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 278
           MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT
Sbjct: 1   MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 60

Query: 279 ISSEETDDFKQETLPSKSNESPEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXX 458
           ISSEETDDFKQETLPSKSNESPEQT                             R     
Sbjct: 61  ISSEETDDFKQETLPSKSNESPEQTDDVDDDDDEDHVDSRDTDSEEADHADDADRSDESH 120

Query: 459 XXXXXXXLXXXXXXXXXXXXXXXXXXXGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 638
                  L                   GDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT
Sbjct: 121 HSDESDELVTDFPTDTPATDVTPAVPTGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 180

Query: 639 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 818
           EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE
Sbjct: 181 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 240

Query: 819 YTIKTYDGSHEHSNVIESQENPK 887
           YTIKTYDGS+EHSNVIESQENPK
Sbjct: 241 YTIKTYDGSNEHSNVIESQENPK 263



 Score = 47.4 bits (111), Expect(3) = e-115
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +2

Query: 884 QVSQEFHSHEDKLVPDSKSEED 949
           +VSQEFHSHEDKLVPDSKSEED
Sbjct: 263 KVSQEFHSHEDKLVPDSKSEED 284



 Score = 33.5 bits (75), Expect(3) = e-115
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 955  LKLRVSHELKSASSEIN 1005
            LKLRVSHEL+SASSEIN
Sbjct: 287  LKLRVSHELESASSEIN 303


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,072,596
Number of extensions: 725399
Number of successful extensions: 2050
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2042
Number of HSP's successfully gapped: 4
Length of query: 350
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 250
Effective length of database: 8,854,232
Effective search space: 2213558000
Effective search space used: 2213558000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000439
         (1052 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         747   0.0  

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  747 bits (377), Expect = 0.0
 Identities = 416/425 (97%), Gaps = 3/425 (0%)
 Strand = Plus / Minus

                                                                             
Query: 621       cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 680
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308748 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 140308689

                                                                             
Query: 681       ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 740
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308688 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 140308629

                                                                             
Query: 741       caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 800
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308628 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 140308569

                                                                             
Query: 801       caggagcagtccaaagaatacacgatcaagacctatgatgggagccatgagcattccaat 860
                 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 140308568 caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 140308509

                                                                             
Query: 861       gtgattgagagtcaggaaaatccc-aagtcagccaagaattccacagccatgaagacaag 919
                 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 140308508 gtgattgagagtcaggaaaatcccaaagtcagccaagaattccacagccatgaagacaag 140308449

                                                                             
Query: 920       ctggtcccagactctaagagcgaagaagac-aacccctgaaacttcgagtttctcatgaa 978
                 |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 140308448 ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgagtttctcatgaa 140308389

                                                                             
Query: 979       ttaaagagtgcgtcttctgaaatcaactgcg-gaaaaacaatgtcttactttgcttttag 1037
                 ||| |||||||||||||||| |||||||| | |||| |||||||||||||||||||||||
Sbjct: 140308388 ttagagagtgcgtcttctgagatcaactgagagaaatacaatgtcttactttgcttttag 140308329

                      
Query: 1038      taaaa 1042
                 |||||
Sbjct: 140308328 taaaa 140308324



 Score =  363 bits (183), Expect = 1e-97
 Identities = 183/183 (100%)
 Strand = Plus / Minus

                                                                             
Query: 441       cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 500
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309599 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 140309540

                                                                             
Query: 501       gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 560
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309539 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 140309480

                                                                             
Query: 561       ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 620
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309479 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 140309420

                    
Query: 621       cag 623
                 |||
Sbjct: 140309419 cag 140309417



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         cagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140315416 cagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactgg 140315357

                                           
Query: 61        actcttcgcggggctgcagaccaagg 86
                 ||||||||||||||||||||||||||
Sbjct: 140315356 actcttcgcggggctgcagaccaagg 140315331



 Score =  163 bits (82), Expect = 2e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                             
Query: 191       gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 250
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140311218 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 140311159

                                       
Query: 251       gcagactttcctagcgccacag 272
                 ||||||||||||||||||||||
Sbjct: 140311158 gcagactttcctagcgccacag 140311137



 Score =  141 bits (71), Expect = 9e-31
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                             
Query: 84        aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 143
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140314186 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 140314127

                            
Query: 144       gcccttccagt 154
                 |||||||||||
Sbjct: 140314126 gcccttccagt 140314116



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                              
Query: 270       cagaatactatttcctcggaggaaacggacgacttcaaacaagag 314
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140310853 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 140310809



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                          
Query: 313       agaccctgccaagcaagtccaacgaaagccctgagcaaaca 353
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309727 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 140309687



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                        
Query: 153       gttaaacagactaattctggcagctcggaggaaaagctg 191
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 140314005 gttaaacagactaattctggcagctcggaggaaaagctg 140313967


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,174,297
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 8
Length of query: 1052
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1031
Effective length of database: 2,808,413,156
Effective search space: 2895473963836
Effective search space used: 2895473963836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)