Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000489
(2060 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209208.1| cytochrome c oxidase subunit II [Bos taurus]. 267 1e-76
Alignment gi|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus]. 280 3e-75
>ref|YP_209208.1| cytochrome c oxidase subunit II [Bos taurus].
Length = 227
Score = 267 bits (683), Expect(2) = 1e-76
Identities = 136/193 (70%), Positives = 154/193 (79%)
Frame = +2
Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
S L+ ++SL+LTTKLTHTSTMDAQEVE Y++DEINNP+
Sbjct: 35 SSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPS 94
Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
LTVKT+GHQ L+FDSY+IPTS+LKPGE+RLLEVDNRVVLP+E+TIR+LV
Sbjct: 95 LTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLV 154
Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
SSEDVLHS AVPSLGLKTDAIPGRLNQTTL+S+RPGLYYGQCSEICGSNHSFMPIVLELV
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELV 214
Query: 641 PLKYFEKWSTSIL 679
PLKYFEKWS S+L
Sbjct: 215 PLKYFEKWSASML 227
Score = 40.0 bits (92), Expect(2) = 1e-76
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1
Query: 4 FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
+P LG +D+ SPI+EELL DHTL+ VFL
Sbjct: 3 YPMQLGFQDATSPIMEELLHFHDHTLMIVFL 33
>ref|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus].
Length = 226
Score = 280 bits (716), Expect = 3e-75
Identities = 148/226 (65%), Positives = 167/226 (73%)
Frame = +2
Query: 917 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
MNENLF SFI FPSLLFPT RL++NR +++QQ ++QL SKQ+++I
Sbjct: 1 MNENLFTSFITPVILGLPLVTLIVLFPSLLFPTSNRLVSNRFVTLQQWMLQLVSKQMMSI 60
Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
HN KGQT TN+LGLLPHSFTPTTQLS+NLG+AIPL + V TGFR+K
Sbjct: 61 HNSKGQTWTLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGAVITGFRNK 120
Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
TK SLAHFLPQGTP PLIPMLVIIETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180
Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
L++IS EFAVA+IQAYVFTLLVSLYLHDNT
Sbjct: 181 LMSISTTTALITFTILILLTILEFAVAMIQAYVFTLLVSLYLHDNT 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,793,933
Number of extensions: 1231190
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3617
Number of HSP's successfully gapped: 3
Length of query: 686
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 577
Effective length of database: 14,074,782
Effective search space: 8121149214
Effective search space used: 8121149214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000489
(2060 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiar... 298 1e-80
Alignment gi|NP_008474.4| cytochrome c oxidase subunit II [Canis lupus fa... 254 8e-74
>ref|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiaris].
Length = 226
Score = 298 bits (763), Expect = 1e-80
Identities = 160/226 (70%), Positives = 172/226 (76%)
Frame = +2
Query: 917 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
MNENLFASF A FPS+LFPTP RLINNR ISIQQ LIQLTSKQ++AI
Sbjct: 1 MNENLFASFAAPSMMGLPIVVLIVMFPSILFPTPSRLINNRLISIQQWLIQLTSKQMLAI 60
Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
HNQKG+T TN+LGLLPHSFTPTTQLS+NLG+AIPL + TV TGFR+K
Sbjct: 61 HNQKGRTWALMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYK 120
Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
TK SLAHFLPQGTP PLIPMLV+IETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKASLAHFLPQGTPLPLIPMLVVIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180
Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
L+NIS EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 LINISATTAFITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
>ref|NP_008474.4| cytochrome c oxidase subunit II [Canis lupus familiaris].
Length = 227
Score = 254 bits (650), Expect(2) = 8e-74
Identities = 128/189 (67%), Positives = 146/189 (77%)
Frame = +2
Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
S L+ ++SL+LTTKLTHTSTMDAQEVE Y++DEINNP+
Sbjct: 35 SSLVLYIISLMLTTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEINNPS 94
Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
LTVKT+GHQ L FDSY+IPT +LKPGE+RLLEVDNRVVLP+E+TIR+L+
Sbjct: 95 LTVKTMGHQWYWSYEYTDYEDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLI 154
Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
SSEDVLHS AVPSLGLKTDAIPGRLNQTTL++ RPGLYYGQCSEICGSNHSFMPIVLE+V
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMAMRPGLYYGQCSEICGSNHSFMPIVLEMV 214
Query: 641 PLKYFEKWS 667
PL YFE WS
Sbjct: 215 PLSYFETWS 223
Score = 43.1 bits (100), Expect(2) = 8e-74
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 4 FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
+PF LG++D+ SPI+EELL DHTL+ VFL
Sbjct: 3 YPFQLGLQDATSPIMEELLHFHDHTLMIVFL 33
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,862,894
Number of extensions: 1197396
Number of successful extensions: 4368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4039
Number of HSP's successfully gapped: 3
Length of query: 686
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 576
Effective length of database: 15,207,544
Effective search space: 8759545344
Effective search space used: 8759545344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000489
(2060 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens]. 260 3e-69
Alignment gi|YP_003024029.1| cytochrome c oxidase subunit II [Homo sapien... 208 1e-53
>ref|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens].
Length = 226
Score = 260 bits (665), Expect = 3e-69
Identities = 143/226 (63%), Positives = 158/226 (69%)
Frame = +2
Query: 917 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
MNENLFASFIA FP LL PT K LINNR I+ QQ LI+LTSKQ++ +
Sbjct: 1 MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTM 60
Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
HN KG+T TN+LGLLPHSFTPTTQLS+NL +AIPL + TV GFR K
Sbjct: 61 HNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSK 120
Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
K +LAHFLPQGTP PLIPMLVIIETISL IQP+ALAVRLTANITAGHLL+HLIG ATLA
Sbjct: 121 IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSATLA 180
Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
+ I+ E AVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226
>ref|YP_003024029.1| cytochrome c oxidase subunit II [Homo sapiens].
Length = 227
Score = 208 bits (530), Expect = 1e-53
Identities = 104/184 (56%), Positives = 132/184 (71%)
Frame = +2
Query: 107 LLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPALT 286
L+ + L LTTKLT+T+ DAQE+E Y+ DE+N+P+LT
Sbjct: 37 LVLYALFLTLTTKLTNTNISDAQEMETVWTILPAIILVLIALPSLRILYMTDEVNDPSLT 96
Query: 287 VKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILVSS 466
+K+IGHQ L F+SY++P L+PG++RLL+VDNRVVLPIE IR++++S
Sbjct: 97 IKSIGHQWYWTYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPIEAPIRMMITS 156
Query: 467 EDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELVPL 646
+DVLHS AVP+LGLKTDAIPGRLNQTT +TRPG+YYGQCSEICG+NHSFMPIVLEL+PL
Sbjct: 157 QDVLHSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPL 216
Query: 647 KYFE 658
K FE
Sbjct: 217 KIFE 220
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,694,044
Number of extensions: 1167302
Number of successful extensions: 3666
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3606
Number of HSP's successfully gapped: 2
Length of query: 686
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 577
Effective length of database: 14,704,088
Effective search space: 8484258776
Effective search space used: 8484258776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000489
(2060 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904331.1| cytochrome c oxidase subunit II [Mus musculus]. 255 9e-74
Alignment gi|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus]. 265 8e-71
>ref|NP_904331.1| cytochrome c oxidase subunit II [Mus musculus].
Length = 227
Score = 255 bits (651), Expect(2) = 9e-74
Identities = 128/193 (66%), Positives = 147/193 (76%)
Frame = +2
Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
S L+ ++SL+LTTKLTHTSTMDAQEVE Y++DEINNP
Sbjct: 35 SSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAVILIMIALPSLRILYMMDEINNPV 94
Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
LTVKT+GHQ L FDSY+IPT+DLKPGE+RLLEVDNRVVLP+E+ IR+L+
Sbjct: 95 LTVKTMGHQWYWSYEYTDYEDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLI 154
Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
SSEDVLHS AVPSLGLKTDAIPGRLNQ T+ S RPGL+YGQCSEICGSNHSFMPIVLE+V
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFMPIVLEMV 214
Query: 641 PLKYFEKWSTSIL 679
PLKYFE WS S++
Sbjct: 215 PLKYFENWSASMI 227
Score = 42.4 bits (98), Expect(2) = 9e-74
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +1
Query: 4 FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
+PF LG++D+ SPI+EEL+ DHTL+ VFL
Sbjct: 3 YPFQLGLQDATSPIMEELMNFHDHTLMIVFL 33
>ref|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus].
Length = 226
Score = 265 bits (678), Expect = 8e-71
Identities = 143/226 (63%), Positives = 160/226 (70%)
Frame = +2
Query: 917 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
MNENLFASFI FPS+LFP+ KRLINNR S Q L++L KQ++ I
Sbjct: 1 MNENLFASFITPTMMGFPIVVAIIMFPSILFPSSKRLINNRLHSFQHWLVKLIIKQMMLI 60
Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
H KG+T TN+LGLLPH+FTPTTQLS+NL +AIPL + V TGFRHK
Sbjct: 61 HTPKGRTWTLMIVSLIMFIGSTNLLGLLPHTFTPTTQLSMNLSMAIPLWAGAVITGFRHK 120
Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
K+SLAHFLPQGTP LIPML+IIETISLFIQP+ALAVRLTANITAGHLL+HLIGGATL
Sbjct: 121 LKSSLAHFLPQGTPISLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLV 180
Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
L+NIS EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 LMNISPPTATITFIILLLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,649,266
Number of extensions: 996003
Number of successful extensions: 2903
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2865
Number of HSP's successfully gapped: 3
Length of query: 686
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 578
Effective length of database: 12,373,671
Effective search space: 7151981838
Effective search space used: 7151981838
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000489
(2060 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa]. 313 2e-85
Alignment gi|NP_008637.1| cytochrome c oxidase subunit II [Sus scrofa]. 279 4e-81
Alignment gi|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa]. 64 3e-10
>ref|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa].
Length = 226
Score = 313 bits (802), Expect = 2e-85
Identities = 172/226 (76%), Positives = 178/226 (78%)
Frame = +2
Query: 917 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
MNENLFASFIA FPSLLFPTPKRLINNRTISIQQ LIQLTSKQ++AI
Sbjct: 1 MNENLFASFIAPTMMGLPIVTLIIMFPSLLFPTPKRLINNRTISIQQWLIQLTSKQMMAI 60
Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
HNQKGQT TNILGLLPHSFTPTTQLS+NLG+AIPL SATVFTGFR+K
Sbjct: 61 HNQKGQTWSLMLMSLIMFIGSTNILGLLPHSFTPTTQLSMNLGMAIPLWSATVFTGFRYK 120
Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
TKTSLAHFLPQGTPA LIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 180
Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
LLNI+ EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 LLNINTMTAFITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
>ref|NP_008637.1| cytochrome c oxidase subunit II [Sus scrofa].
Length = 229
Score = 279 bits (713), Expect(2) = 4e-81
Identities = 143/195 (73%), Positives = 157/195 (80%)
Frame = +2
Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
S L+ ++SL+LTTKLTHTSTMDAQEVE Y++DEINNPA
Sbjct: 35 SSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPA 94
Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
LTVKT+GHQ LTFDSY+IPTSDLKPGE+RLLEVDNRVVLP+E+TIR+LV
Sbjct: 95 LTVKTMGHQWYWSYEYTDYEDLTFDSYMIPTSDLKPGEMRLLEVDNRVVLPMEMTIRMLV 154
Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
SSEDVLHS AVPSLGLKTDAIPGRLNQTTL+STRPGLYYGQCSEICGSNHSFMPIVLELV
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLYYGQCSEICGSNHSFMPIVLELV 214
Query: 641 PLKYFEKWSTSILTG 685
PLKYFEKWSTS+LTG
Sbjct: 215 PLKYFEKWSTSMLTG 229
Score = 42.4 bits (98), Expect(2) = 4e-81
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +1
Query: 4 FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
+PF LG +D+ SPI+EELL DHTL+ VFL
Sbjct: 3 YPFQLGFQDATSPIMEELLHFHDHTLMIVFL 33
>ref|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa].
Length = 67
Score = 63.9 bits (154), Expect = 3e-10
Identities = 35/58 (60%), Positives = 36/58 (62%)
Frame = +3
Query: 756 MPQLDXXXXXXXXXXXXXXXXXXXQLKISNYSYPASPESTELKTQKHSTP*EIK*TKI 929
MPQLD QLKISNYSYPASPES ELKTQKHSTP E+K TKI
Sbjct: 1 MPQLDTSTWFITITSMIMTLFILFQLKISNYSYPASPESIELKTQKHSTPWEMKWTKI 58
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,345,367
Number of extensions: 901127
Number of successful extensions: 2302
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2287
Number of HSP's successfully gapped: 4
Length of query: 686
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 580
Effective length of database: 8,704,850
Effective search space: 5048813000
Effective search space used: 5048813000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000489
(2060 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1729 0.0
Sscrofa_Chr09 1005 0.0
Sscrofa_Chr08 805 0.0
Sscrofa_ChrX 761 0.0
Sscrofa_Chr15 466 e-128
Sscrofa_Chr05 278 1e-71
Sscrofa_Chr11 143 4e-31
Sscrofa_Chr04 137 3e-29
Sscrofa_Chr13 135 1e-28
Sscrofa_Chr14 80 5e-12
>Sscrofa_Chr02
|| Length = 162569375
Score = 1729 bits (872), Expect = 0.0
Identities = 1318/1463 (90%), Gaps = 4/1463 (0%)
Strand = Plus / Plus
Query: 125 tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 120053760 tcacttatattaacaacaaaactgacacacactagcatgatagatgcccaagaaatagag 120053819
Query: 185 acaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattacga 244
||||||||||||||||| |||||||| ||||||||||| || |||||||||||| |||||
Sbjct: 120053820 acaatttgaacaatcctgcccgctatcattctaattctaatcgcccttccatcactacga 120053879
Query: 245 atcctttatataatagacgaaattaataacccagccttaaccgtaaaaaccataggacat 304
|||||||| |||||||| ||||| || || | |||||||| |||||||| |||||||||
Sbjct: 120053880 atcctttacataatagatgaaatcaacaatctggccttaactgtaaaaactataggacat 120053939
Query: 305 caatgatactgaagctacgagtatacagactatgaagacctcacctttgactcatatata 364
||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct: 120053940 caatgatactgaagctatgaatatacagactatgaagacctcacctttgactcatacata 120053999
Query: 365 atccccacatcagatcttaaacctggagaaatacgactactagaagtagacaatcgagtt 424
|||||||||||||||||||| || |||||||||||||||||||| ||||| |||| |||
Sbjct: 120054000 atccccacatcagatcttaagcccggagaaatacgactactagaggtagataatcaggtt 120054059
Query: 425 gttctaccaatagaaataacaatccgaatattagtatcctctgaagacgtactgcactca 484
||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||
Sbjct: 120054060 gttctaccaatagaaataacaattcgaatattagtatcttctgaagacgtattacactca 120054119
Query: 485 tgagccgtcccatccctcggtttaaaaacagatgctatcccaggacgactaaaccaaaca 544
|||||| ||||||||||| || ||||||| |||||||| |||||||||||||||||||||
Sbjct: 120054120 tgagccatcccatccctcagtctaaaaacggatgctattccaggacgactaaaccaaaca 120054179
Query: 545 actctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtggatca 604
||| ||||||||||||||||||| ||||| || ||||| |||||| | |||| ||| |||
Sbjct: 120054180 actttaatatccacacgacctggtctttactatggacaatgctcaaagatctatgggtca 120054239
Query: 605 aaccacagcttcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatgg 664
||||||||||| || ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 120054240 aaccacagctttatacccattgtactcgagcttgttccattaaagtacttcgaaaaatgg 120054299
Query: 665 tcaacatcaatattaacaggttcattgagatgctagtcagcactaaccttttaagttaga 724
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 120054300 acaacatcaatattaacaggttcatcgagaagctagtcagcactaaccttttaagttaga 120054359
Query: 725 gatcgggagcctaaatctcccctcaatggttatgccacaactagatacatctacatgatt 784
|||||||||| |||| ||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct: 120054360 gatcgggagcttaaacctcccctcaatggg-atgccacaattagacacatctacatgatt 120054418
Query: 785 cattacaattacatcaataattataacattatttattttattccaactaaaaatctcaaa 844
||||||||||| ||||||| || || | ||||||||||||| |||||||||||||||||
Sbjct: 120054419 cattacaattatatcaatacttgtaccgctatttattttatttcaactaaaaatctcaaa 120054478
Query: 845 ctactcatacccagcaagcccagaatcaaccgaactcaaaactcaaaaacatagcacccc 904
||| ||||||||| ||| ||||||||| |||||||| ||||||||||||| |||||
Sbjct: 120054479 ctattcatacccaataagtccagaatcagttgaactcaagactcaaaaacataatacccc 120054538
Query: 905 ttgagaaataaaatgaacgaaaatctatttgcctctttcattgcccctacgataatagga 964
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 120054539 ctgagaaataaa-tgaacgaaaatctatttgcctctttcattacccctacgataatagga 120054597
Query: 965 ctacctattgtcaccttaattattatattcccaagcttactattcccaacacccaaacga 1024
|||||||| ||||||||||||||||||||||| ||| || |||||||| |||| ||||||
Sbjct: 120054598 ctacctatcgtcaccttaattattatattccccagcctattattcccagcacctaaacga 120054657
Query: 1025 ctcattaataaccgcacaatctcgatccaacaatgattaatccaactaacatccaaacaa 1084
|| |||||||| || | ||||| || ||||| |||||||||||| ||||||||||||||
Sbjct: 120054658 cttattaataatcgtatgatctctattcaacagtgattaatccaattaacatccaaacaa 120054717
Query: 1085 ataatagctattcacaaccaaaaaggccaaacctgatcactaatacttatatctctaatt 1144
|||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 120054718 ataatagctattcataaccaaaaaggccaaacctgatcactgatactcatgtctctaatc 120054777
Query: 1145 atattcattggctcaacaaacatcctaggcctactaccacactcattcacacccaccaca 1204
||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 120054778 atatttattggctcaacaaatatcctaggtctactaccacactcattcacacctaccaca 120054837
Query: 1205 caactatcaataaacctgggtatagcaatccccctatgatcagcaaccgtattcacagga 1264
|| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 120054838 cagctatcaataaacctgggcatagcaattcccctatgatcagcaactgtatttacagga 120054897
Query: 1265 ttccgccataaaaccaaaacatcactagcccactttctaccacaaggaacacccgcccca 1324
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 120054898 ttccgccataaaaccaaagcatcactagcccactttttaccacaaggaacacccgctcca 120054957
Query: 1325 ttaattcctatgctcgtaattattgaaactattagcctatttattcaaccagtagcccta 1384
|||||||||| |||||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct: 120054958 ctaattcctatactcgtaatcattgaaaccattaacctatttattcaaccagtggcccta 120055017
Query: 1385 gccgtacgactgacagccaacattacagcagggcacctattaattcatctaattggaggg 1444
||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct: 120055018 gccgtacgactaacagccaatattacagcagggcacctactaattcacctaattggaggg 120055077
Query: 1445 gccacattagcactactcaacatcagcactataacagcttttatcacatttactatcctc 1504
||||| ||||||||||| || |||||||| |||||||| || ||||||| | |||||
Sbjct: 120055078 gccaccttagcactacttaatatcagcaccataacagccttcgtcacattcatcatcctt 120055137
Query: 1505 atcctattaactattcttgaatttgcagtagctctgatccaagcttatgtgtttacactg 1564
||||||||||| |||||||| || ||||||||||| |||||||| ||||| || |||
Sbjct: 120055138 atcctattaaccattcttgagttcgcagtagctctaatccaagcctatgtatt--cacat 120055195
Query: 1565 ctagtaagcttatacctacacga 1587
|||||||||||||| ||||||||
Sbjct: 120055196 ctagtaagcttatatctacacga 120055218
Score = 458 bits (231), Expect = e-126
Identities = 315/343 (91%)
Strand = Plus / Plus
Query: 1253 gtattcacaggattccgccataaaaccaaaacatcactagcccactttctaccacaagga 1312
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 136867733 gtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaagga 136867792
Query: 1313 acacccgccccattaattcctatgctcgtaattattgaaactattagcctatttattcaa 1372
|||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 136867793 acacccgctccattaatccctatgctcgtaatcattgaaaccattagcctatttattcaa 136867852
Query: 1373 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 1432
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 136867853 ccagtagccctagccgtacgactgacagccaacatcacagcagggcacctattaattcac 136867912
Query: 1433 ctaattggaggggccacattagcactactcaacatcagcactataacagcttttatcaca 1492
|||| |||||||||||| || |||||||||||||||||||| |||||||| || |||||
Sbjct: 136867913 ctaactggaggggccaccttggcactactcaacatcagcaccataacagccttcgtcaca 136867972
Query: 1493 tttactatcctcatcctattaactattcttgaatttgcagtagctctgatccaagcttat 1552
|||| ||| || || ||||| || |||||||| |||||||||| ||| |||||||| |||
Sbjct: 136867973 tttattattcttattctattgaccattcttgagtttgcagtaggtctaatccaagcctat 136868032
Query: 1553 gtgtttacactgctagtaagcttatacctacacgacaatacat 1595
|| ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 136868033 gtatttacactgctagtaagcttatatctacacgataatacat 136868075
>Sscrofa_Chr09
|| Length = 153670197
Score = 1005 bits (507), Expect = 0.0
Identities = 610/643 (94%), Gaps = 1/643 (0%)
Strand = Plus / Plus
Query: 255 taatagacgaaattaataacccagccttaaccgtaaaaaccataggacatcaatgatact 314
|||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 130332532 taatagacgaaattaacaatccagccttaactgtaaaaaccataggacaccaatgatact 130332591
Query: 315 gaagctacgagtatacagactatgaagacctcacctttgactcatatataatccccacat 374
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 130332592 gaagctacgagtatacagactatgaagacctcacctttgactcatatatagtccccacat 130332651
Query: 375 cagatcttaaacctggagaaatacgactactagaagtagacaatcgagttgttctaccaa 434
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 130332652 cagatcttaaacccggagagatacgactactagaggtagacaatcgagttgttctaccaa 130332711
Query: 435 tagaaataacaatccgaatattagtatcctctgaagacgtactgcactcatgagccgtcc 494
|||| |||||||| ||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct: 130332712 tagagataacaattcgaatattagtgtcttctgaagacgtattacactcatgagccgtcc 130332771
Query: 495 catccctcggtttaaaaacagatgctatcccaggacgactaaaccaaacaactctaatat 554
||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 130332772 catccctcggtctaaaaacggatgctattccaggacgactaaaccaaacaactctaatat 130332831
Query: 555 ccacacgacctggcctttattacggacagtgctcagaaatctgtggatcaaaccacagct 614
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 130332832 ccacacgacctggtctttattacggacaatgctcagaaatctgtggatcaaaccacggct 130332891
Query: 615 tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacatcaa 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 130332892 tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacgtcaa 130332951
Query: 675 tattaacaggttcattgagatgctagtcagcactaaccttttaagttagagatcgggagc 734
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 130332952 tattaacaggttcattgagaagctagtcagaactaaccttttaagttagagatcgggagc 130333011
Query: 735 ctaaatctcccctcaatggttatgccacaactagatacatctacatgattcattacaatt 794
|||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct: 130333012 ttaaatctcccctcaatgg-tatgccacaattagacacatctacatgattcattacaatt 130333070
Query: 795 acatcaataattataacattatttattttattccaactaaaaatctcaaactactcatac 854
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130333071 atatcaataattatgacattatttattttattccaactaaaaatctcaaactactcatac 130333130
Query: 855 ccagcaagcccagaatcaaccgaactcaaaactcaaaaacata 897
||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 130333131 ccaacaagcccagaatcaattgagctcaaaactcaaaaacata 130333173
Score = 1005 bits (507), Expect = 0.0
Identities = 610/643 (94%), Gaps = 1/643 (0%)
Strand = Plus / Plus
Query: 255 taatagacgaaattaataacccagccttaaccgtaaaaaccataggacatcaatgatact 314
|||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 130436963 taatagacgaaattaacaatccagccttaactgtaaaaaccataggacaccaatgatact 130437022
Query: 315 gaagctacgagtatacagactatgaagacctcacctttgactcatatataatccccacat 374
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 130437023 gaagctacgagtatacagactatgaagacctcacctttgactcatatatagtccccacat 130437082
Query: 375 cagatcttaaacctggagaaatacgactactagaagtagacaatcgagttgttctaccaa 434
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 130437083 cagatcttaaacccggagagatacgactactagaggtagacaatcgagttgttctaccaa 130437142
Query: 435 tagaaataacaatccgaatattagtatcctctgaagacgtactgcactcatgagccgtcc 494
|||| |||||||| ||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct: 130437143 tagagataacaattcgaatattagtgtcttctgaagacgtattacactcatgagccgtcc 130437202
Query: 495 catccctcggtttaaaaacagatgctatcccaggacgactaaaccaaacaactctaatat 554
||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 130437203 catccctcggtctaaaaacggatgctattccaggacgactaaaccaaacaactctaatat 130437262
Query: 555 ccacacgacctggcctttattacggacagtgctcagaaatctgtggatcaaaccacagct 614
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 130437263 ccacacgacctggtctttattacggacaatgctcagaaatctgtggatcaaaccacggct 130437322
Query: 615 tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacatcaa 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 130437323 tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacgtcaa 130437382
Query: 675 tattaacaggttcattgagatgctagtcagcactaaccttttaagttagagatcgggagc 734
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 130437383 tattaacaggttcattgagaagctagtcagaactaaccttttaagttagagatcgggagc 130437442
Query: 735 ctaaatctcccctcaatggttatgccacaactagatacatctacatgattcattacaatt 794
|||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct: 130437443 ttaaatctcccctcaatgg-tatgccacaattagacacatctacatgattcattacaatt 130437501
Query: 795 acatcaataattataacattatttattttattccaactaaaaatctcaaactactcatac 854
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130437502 atatcaataattatgacattatttattttattccaactaaaaatctcaaactactcatac 130437561
Query: 855 ccagcaagcccagaatcaaccgaactcaaaactcaaaaacata 897
||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 130437562 ccaacaagcccagaatcaattgagctcaaaactcaaaaacata 130437604
>Sscrofa_Chr08
|| Length = 148491826
Score = 805 bits (406), Expect = 0.0
Identities = 586/646 (90%)
Strand = Plus / Plus
Query: 950 cctacgataataggactacctattgtcaccttaattattatattcccaagcttactattc 1009
||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct: 34034136 cctacgataataggactacctattgtcaccttaattattatattccccagcctattattc 34034195
Query: 1010 ccaacacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaa 1069
||| ||||||||||||| |||||||| |||| ||||| || ||||||||||| ||||||
Sbjct: 34034196 ccagcacccaaacgacttattaataatcgcatgatctccattcaacaatgattgatccaa 34034255
Query: 1070 ctaacatccaaacaaataatagctattcacaaccaaaaaggccaaacctgatcactaata 1129
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 34034256 ttaacatccaaacaaataatagctattcacaaccaaaaaggccaaacctggtcactgata 34034315
Query: 1130 cttatatctctaattatattcattggctcaacaaacatcctaggcctactaccacactca 1189
|| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 34034316 ctcatatctctaatcatatttattggctcaacaaatatcctaggtctactaccacactca 34034375
Query: 1190 ttcacacccaccacacaactatcaataaacctgggtatagcaatccccctatgatcagca 1249
|||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 34034376 ttcacacctaccacacagctatcaataaacctgggcatagcaattcccctatgatcagca 34034435
Query: 1250 accgtattcacaggattccgccataaaaccaaaacatcactagcccactttctaccacaa 1309
|| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 34034436 actgtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaa 34034495
Query: 1310 ggaacacccgccccattaattcctatgctcgtaattattgaaactattagcctatttatt 1369
|||||| |||| ||| | ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 34034496 ggaacatccgctccactgattcctatgctcgtaatcattgaaaccattagcctatttatt 34034555
Query: 1370 caaccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaatt 1429
|||||||| ||||||||||||| ||| ||||||||||| |||||||||||||| |||||
Sbjct: 34034556 caaccagtggccctagccgtaccactaacagccaacatcacagcagggcacctgctaatt 34034615
Query: 1430 catctaattggaggggccacattagcactactcaacatcagcactataacagcttttatc 1489
|| ||||||||||||||||| || |||||||||| ||||||||| |||||||| || ||
Sbjct: 34034616 cacctaattggaggggccaccttggcactactcagcatcagcaccataacagccttcgtc 34034675
Query: 1490 acatttactatcctcatcctattaactattcttgaatttgcagtagctctgatccaagct 1549
||||||| ||| || || ||||| || |||||||| || ||||||||||| ||||||||
Sbjct: 34034676 acatttattattcttattctattgaccattcttgagttcgcagtagctctaatccaagcc 34034735
Query: 1550 tatgtgtttacactgctagtaagcttatacctacacgacaatacat 1595
||||| || |||||||||||||||||||| |||||||| |||||||
Sbjct: 34034736 tatgtattcacactgctagtaagcttatatctacacgataatacat 34034781
>Sscrofa_ChrX
|| Length = 144288218
Score = 761 bits (384), Expect = 0.0
Identities = 1206/1474 (81%), Gaps = 12/1474 (0%)
Strand = Plus / Plus
Query: 125 tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
||||| ||| |||||||||||||||||||||| ||||| || || ||||||| ||||||
Sbjct: 23494742 tcactcatattaacaacaaaactgacacacaccagcactatagacacccaagaggtagaa 23494801
Query: 185 acaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattacga 244
||||| ||||||||| ||| | |||||| | ||| | |||||||| || || |||||
Sbjct: 23494802 acaatctgaacaatcttacagaccattattttgattttaattgccctgccttctctacga 23494861
Query: 245 atcctttatataatagacgaaattaataacccagccttaaccgtaaaaaccataggacat 304
|| || ||||| ||||| ||||||||||||||| |||||||| |||||| ||||| |||
Sbjct: 23494862 attctatatatgatagatgaaattaataacccatccttaaccataaaaataatagggcat 23494921
Query: 305 caatgatactgaagctacgagtatacagactatgaagacctcacctttgactcatatata 364
|| |||||||||||||| ||||| ||||| ||| |||| || || || |||||||||||
Sbjct: 23494922 cactgatactgaagctatgagtacacagattataaagatcttactttcaactcatatata 23494981
Query: 365 atccccacatcagatcttaaacctggagaaatacgactactagaagtagacaatcgagtt 424
||||||||||| || || ||||| ||||| ||||||||||||||| |||||| ||||
Sbjct: 23494982 atccccacatccgacctgaaacccggagagatacgactactagaaacggacaattgagta 23495041
Query: 425 gttctaccaatagaaataacaatccgaatattagtatcctctgaagacgtactgcactca 484
|| |||||||||| || ||||| |||| | | || ||||| || || | ||||||
Sbjct: 23495042 gtcttaccaatagagatgacaatttgaatgctggcctcttctgaggatgtcttacactca 23495101
Query: 485 tgagccgtcccatccctcggtttaaaaacagatgctatcccaggacgactaaaccaaaca 544
| |||| | | ||| || || |||||||||||||||||||||| ||||| || || |||
Sbjct: 23495102 taagccatacaatcactaggcctaaaaacagatgctatcccagggcgactgaatcagaca 23495161
Query: 545 actctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtggatca 604
||| |||| || || |||||||| |||||||||||||| |||||||| ||||| || |||
Sbjct: 23495162 actataatgtcaacgcgacctggtctttattacggacaatgctcagagatctgcgggtca 23495221
Query: 605 aaccacagcttcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatgg 664
||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||
Sbjct: 23495222 aaccacagcttcatgcccattgtgctggaacttgttccactaaagtacttcgaaaaatgg 23495281
Query: 665 tcaacatcaatattaacaggttcattgagatgctagtcagcactaaccttttaagttaga 724
||| |||||||||||||||||||||||||| |||| | ||| |||||||||| ||
Sbjct: 23495282 tcagcatcaatattaacaggttcattgagaagctaattagcgctaacctttt------ga 23495335
Query: 725 gatcgggagcctaaatctcccctcaatggttatgccacaactagatacatctacatgatt 784
|| ||||| ||| |||||||| |||| | |||||||||||||||||||||||||||||
Sbjct: 23495336 gactgggagt-taagtctccccttaatgat-atgccacaactagatacatctacatgatt 23495393
Query: 785 cattacaattacatcaataattataacattatttattttattccaactaaaaatctcaaa 844
||| || ||| | ||||||| ||| || || ||||| ||| ||||| |||||||
Sbjct: 23495394 catcactattttaccaataataatagttcctttcatcttatttcaattaaaagtctcaaa 23495453
Query: 845 ctactcatacccagcaagcccagaatcaaccgaactcaaaact-caaaaacatagca--c 901
||| | ||||| |||||||| |||| ||| || ||| | |||||||| ||| |
Sbjct: 23495454 ctatacttaccctatgagcccagagccaactgaa-tctaaagtacaaaaacaaagcttgc 23495512
Query: 902 cccttgagaaataaaatgaacgaaaatctatttgcctctttcattgcccctacgataata 961
||||||||||| ||||||||| |||| ||||||||||||||||| |||||| |||||||
Sbjct: 23495513 cccttgagaaacaaaatgaacaaaaaattatttgcctctttcattacccctatgataata 23495572
Query: 962 ggactacctattgtcaccttaattattatattcccaagcttactattcccaacacccaaa 1021
|||||||| || || | ||||| || || ||||||||| ||||||| || |||| |||
Sbjct: 23495573 ggactacccatcctctctttaatcatcatgttcccaagcctactatttcctgcacctaaa 23495632
Query: 1022 cgactcattaataaccgcacaatctcgatccaacaatgattaatccaactaacatccaaa 1081
| || ||||| || |||| |||| | |||||||||||| ||||||| ||||| |||
Sbjct: 23495633 tggctaattaacaatcgcatggtctctgttcaacaatgattagtccaactcacatctaaa 23495692
Query: 1082 caaataatagctattcacaaccaaaaaggccaaacctgatcactaatacttatatctcta 1141
||||| | ||| |||||||| ||||| | |||||||||| |||| ||| ||||||| |||
Sbjct: 23495693 caaatgacagccattcacaatcaaaaggaccaaacctgagcactcatatttatatcccta 23495752
Query: 1142 attatattcattggctcaacaaacatcctaggcctactaccacactcattcacacccacc 1201
|||||||| |||||||||||||||||| |||| |||| |||||| ||||||||||| ||
Sbjct: 23495753 attatatttattggctcaacaaacatcttaggtctaccaccacattcattcacacctaca 23495812
Query: 1202 acacaactatcaataaacctgggtatagcaatccccctatgatcagcaaccgtattcaca 1261
||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 23495813 acacaactatcaataaacctgggcatggcaatccccctgtgatcagcaaccgtattcacg 23495872
Query: 1262 ggattccgccataaaaccaaaacatcactagcccactttctaccacaaggaacacccgcc 1321
||||||| | ||||| ||| ||||| | ||||| |||||||||||||||||||| |||
Sbjct: 23495873 ggattcctcttcaaaactaaagcatcattggcccattttctaccacaaggaacaccagcc 23495932
Query: 1322 ccattaattcctatgctcgtaattattgaaactattagcctatttattcaaccagtagcc 1381
|| | ||||| || | |||||||| ||||| || ||||| |||||||||| ||||||
Sbjct: 23495933 ccgctgattccaatacgtgtaattatcgaaacgataagcctgtttattcaactggtagcc 23495992
Query: 1382 ctagccgtacgactgacagccaacattacagcagggcacctattaattcatctaattgga 1441
|| || ||| | || ||||| |||| |||||||| || || | ||||| ||||||| |
Sbjct: 23495993 ctggctgtatggctaacagctaacaacacagcaggacatttactgattcacctaattgaa 23496052
Query: 1442 ggggccacattagcactactcaacatcagcactataacagcttttatcacatttactatc 1501
|| ||||| ||||||||||||| ||||||||| || ||| | |||||||||| |||
Sbjct: 23496053 ggagccactttagcactactcagcatcagcaccgcaatagccctcatcacatttattatt 23496112
Query: 1502 ctcatcctattaactattcttgaatttgcagtagctctgatccaagcttatgtgtttaca 1561
|||||| | ||||| | ||||| ||||| |||||||| |||||||| ||||| ||||||
Sbjct: 23496113 ctcatcttgctaactgtccttgagtttgccgtagctctaatccaagcctatgtatttaca 23496172
Query: 1562 ctgctagtaagcttatacctacacgacaatacat 1595
| || ||||| |||||||||| ||||| ||||
Sbjct: 23496173 ttactggtaagactatacctacatgacaacacat 23496206
Score = 71.9 bits (36), Expect = 1e-09
Identities = 114/139 (82%), Gaps = 2/139 (1%)
Strand = Plus / Minus
Query: 123 tttcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtag 182
||||||||||||||| | | ||| | ||||| || || |||| ||| | ||| ||||||
Sbjct: 31058304 tttcacttatactaatagctaaattaacacatacaagtacaacagattcacaataagtag 31058245
Query: 183 aaacaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattac 242
||| ||||||||||||| || || ||||||| ||||||| |||||||| ||||||||||
Sbjct: 31058244 aaaaaatttgaacaatctta--cgttattattttaattctaattgccctaccatcattac 31058187
Query: 243 gaatcctttatataataga 261
||| ||||| || |||||
Sbjct: 31058186 aaattctttacattataga 31058168
Score = 71.9 bits (36), Expect = 1e-09
Identities = 114/139 (82%), Gaps = 2/139 (1%)
Strand = Plus / Plus
Query: 123 tttcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtag 182
||||||||||||||| | | ||| | ||||| || || |||| ||| | ||| ||||||
Sbjct: 31252024 tttcacttatactaatagctaaattaacacatacaagtacaacagattcacaataagtag 31252083
Query: 183 aaacaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattac 242
||| ||||||||||||| || || ||||||| ||||||| |||||||| ||||||||||
Sbjct: 31252084 aaaaaatttgaacaatctta--cgttattattttaattctaattgccctaccatcattac 31252141
Query: 243 gaatcctttatataataga 261
||| ||||| || |||||
Sbjct: 31252142 aaattctttacattataga 31252160
>Sscrofa_Chr15
|| Length = 157681621
Score = 466 bits (235), Expect = e-128
Identities = 316/343 (92%)
Strand = Plus / Plus
Query: 1253 gtattcacaggattccgccataaaaccaaaacatcactagcccactttctaccacaagga 1312
|||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 100012155 gtattcacagtattccgccataaaaccaaagcatcactagcccacttcctaccacaagga 100012214
Query: 1313 acacccgccccattaattcctatgctcgtaattattgaaactattagcctatttattcaa 1372
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 100012215 acacccgccccattaatccctatgcttgtaatcattgaaaccattagcctatttattcaa 100012274
Query: 1373 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 1432
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 100012275 ccagtagccctagccgtacgactaacagccaacatcacagcaggacacctattaattcac 100012334
Query: 1433 ctaattggaggggccacattagcactactcaacatcagcactataacagcttttatcaca 1492
||||||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct: 100012335 ctaattggaggagccaccttggcactactcaacatcagcaccataacagctttcgtcaca 100012394
Query: 1493 tttactatcctcatcctattaactattcttgaatttgcagtagctctgatccaagcttat 1552
|||| ||| || || ||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 100012395 tttattattcttattctattgactcttcttgagtttgcagtagctctgatccaagcttat 100012454
Query: 1553 gtgtttacactgctagtaagcttatacctacacgacaatacat 1595
|| ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 100012455 gtatttacactgctagtaagcttatatctacacgataatacat 100012497
Score = 180 bits (91), Expect = 2e-42
Identities = 151/171 (88%)
Strand = Plus / Minus
Query: 950 cctacgataataggactacctattgtcaccttaattattatattcccaagcttactattc 1009
||||||||| ||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct: 110783082 cctacgatagtaggactacctattgtcactttaattattatgttccctagtttactattt 110783023
Query: 1010 ccaacacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaa 1069
|||||| ||||| |||| ||||||||||| | |||||| || ||||||||| ||||||||
Sbjct: 110783022 ccaacatccaaaggactaattaataaccgtataatctccattcaacaatgactaatccaa 110782963
Query: 1070 ctaacatccaaacaaataatagctattcacaaccaaaaaggccaaacctga 1120
|||||||| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct: 110782962 ctaacatctaaacaaataatagccattcacaatcgaaaaggtcagacctga 110782912
>Sscrofa_Chr05
|| Length = 111506441
Score = 278 bits (140), Expect = 1e-71
Identities = 173/184 (94%)
Strand = Plus / Minus
Query: 420 gagttgttctaccaatagaaataacaatccgaatattagtatcctctgaagacgtactgc 479
||||||||||||||||||| |||||||| ||||||||||| || |||||||||||| | |
Sbjct: 63934066 gagttgttctaccaatagagataacaattcgaatattagtgtcttctgaagacgtattac 63934007
Query: 480 actcatgagccgtcccatccctcggtttaaaaacagatgctatcccaggacgactaaacc 539
|||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct: 63934006 actcatgagccgtcccatccctcggtctaaaaacggatgctattccaggacgactaaacc 63933947
Query: 540 aaacaactctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtg 599
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 63933946 aaacaactctaatatccacacgacctggtctttattacggacaatgctcagaaatctgtg 63933887
Query: 600 gatc 603
||||
Sbjct: 63933886 gatc 63933883
>Sscrofa_Chr11
|| Length = 87690581
Score = 143 bits (72), Expect = 4e-31
Identities = 125/140 (89%), Gaps = 2/140 (1%)
Strand = Plus / Plus
Query: 645 taaagtacttcgaaaaatggtcaacatcaatattaacaggttcattgagatgctagtcag 704
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct: 47357817 taaagtacttcaaaaaatggtcaacatcaacattaacaggttcattgagaagctagttag 47357876
Query: 705 cactaaccttttaagttagagatcgggagcctaaatctcccctcaatggttatgccacaa 764
||||||||||||||||||||||| ||| | | | || |||||||| | ||||||||||
Sbjct: 47357877 cactaaccttttaagttagagattggg-gttcagaccttccctcaat-gatatgccacaa 47357934
Query: 765 ctagatacatctacatgatt 784
|||||||||||||||||||
Sbjct: 47357935 ttagatacatctacatgatt 47357954
Score = 63.9 bits (32), Expect = 3e-07
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 1454 gcactactcaacatcagcactataacagcttttatcacatttactatcctcatcctatta 1513
||||||||||| |||||||||| ||| | | ||||| |||||| ||| |||||| || |
Sbjct: 5156448 gcactactcaatatcagcactacaacggatcttatcgcatttattattctcatcttactt 5156389
Query: 1514 actattcttgaatttgcagtagctctgatccaagcttatgtgtttacactgctagtaagc 1573
||||| |||| |||||| |||||||| || ||||| || || ||||| || |||| ||||
Sbjct: 5156388 actatccttgcatttgctgtagctctaattcaagcgtacgtctttaccctactagcaagc 5156329
>Sscrofa_Chr04
|| Length = 143465943
Score = 137 bits (69), Expect = 3e-29
Identities = 117/133 (87%)
Strand = Plus / Plus
Query: 125 tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
||||| || |||||||||||| |||||||||| ||||| || |||||||||||||| ||
Sbjct: 126092312 tcactaatgctaacaacaaaattgacacacaccagcaccatagatgcccaagaagtggag 126092371
Query: 185 acaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattacga 244
|||| ||||||||||| |||||||||||||||||| | |||||||| || ||| |||||
Sbjct: 126092372 gcaatctgaacaatcctgcccgctattattctaattttaattgccctaccttcactacga 126092431
Query: 245 atcctttatataa 257
|||||||||||||
Sbjct: 126092432 atcctttatataa 126092444
Score = 77.8 bits (39), Expect = 2e-11
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 542 acaactctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtgga 601
||||| ||||| || |||||||| || ||||| || ||||| |||||||||||||||||
Sbjct: 72802874 acaaccctaatgtcaacacgaccaggtctttactatggacaatgctcagaaatctgtggg 72802815
Query: 602 tcaaaccacagcttcatgcccattgtacttgaacttgtcccattaaa 648
|| |||||||||| ||||| ||||| || ||||| || ||||||||
Sbjct: 72802814 tccaaccacagctctatgcctattgtcctagaactggttccattaaa 72802768
>Sscrofa_Chr13
|| Length = 218635234
Score = 135 bits (68), Expect = 1e-28
Identities = 131/152 (86%)
Strand = Plus / Plus
Query: 1042 aatctcgatccaacaatgattaatccaactaacatccaaacaaataatagctattcacaa 1101
|||||| ||||||||||| ||||| | |||||||||||||||||||| ||| ||||| ||
Sbjct: 3918295 aatctctatccaacaatggttaattccactaacatccaaacaaataacagccattcataa 3918354
Query: 1102 ccaaaaaggccaaacctgatcactaatacttatatctctaattatattcattggctcaac 1161
|||||||| || ||| || |||||||||||||||| || || ||||| |||||||||||
Sbjct: 3918355 tcaaaaaggtcagaccagagcactaatacttatatccctcatcatatttattggctcaac 3918414
Query: 1162 aaacatcctaggcctactaccacactcattca 1193
||| || || || ||| |||||||||||||||
Sbjct: 3918415 aaatattctgggtctattaccacactcattca 3918446
Score = 61.9 bits (31), Expect = 1e-06
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 901 ccccttgagaaataaaatgaacgaaaatctatttgcctctttcattgcccctacgataat 960
|||||||||||| |||||||| |||| |||||| ||||||||| || | || ||||
Sbjct: 7558192 ccccttgagaaacaaaatgaataaaaaattatttggctctttcatcacctcaacattaat 7558251
Query: 961 aggactacctattgtcaccttaattattatattcccaag 999
|||| ||||||||| ||| ||||| |||||||| |||||
Sbjct: 7558252 aggattacctattgccactttaatcattatatttccaag 7558290
>Sscrofa_Chr14
|| Length = 153851969
Score = 79.8 bits (40), Expect = 5e-12
Identities = 90/106 (84%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 125 tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
||||| ||||||||||||||| |||||| ||| ||||| || ||||||| |||| ||
Sbjct: 91005431 tcactaatactaacaacaaaattgacacgcaccagcaccatagatgccc---aagtggag 91005487
Query: 185 acaatttgaacaatcctacccgctattattctaattcttattgccc 230
||||| ||||||||||| ||| |||||||||||||| | |||||||
Sbjct: 91005488 acaatctgaacaatcctgcccactattattctaattttaattgccc 91005533
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,349,570
Number of extensions: 371
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 25
Length of query: 2060
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2038
Effective length of database: 2,808,408,574
Effective search space: 5723536673812
Effective search space used: 5723536673812
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)