Animal-Genome cDNA 20110601C-000489


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000489
         (2060 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|YP_209208.1| cytochrome c oxidase subunit II [Bos taurus].        267   1e-76
Alignment   gi|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus].              280   3e-75

>ref|YP_209208.1| cytochrome c oxidase subunit II [Bos taurus].
          Length = 227

 Score =  267 bits (683), Expect(2) = 1e-76
 Identities = 136/193 (70%), Positives = 154/193 (79%)
 Frame = +2

Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
           S L+  ++SL+LTTKLTHTSTMDAQEVE                      Y++DEINNP+
Sbjct: 35  SSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPS 94

Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
           LTVKT+GHQ            L+FDSY+IPTS+LKPGE+RLLEVDNRVVLP+E+TIR+LV
Sbjct: 95  LTVKTMGHQWYWSYEYTDYEDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLV 154

Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
           SSEDVLHS AVPSLGLKTDAIPGRLNQTTL+S+RPGLYYGQCSEICGSNHSFMPIVLELV
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELV 214

Query: 641 PLKYFEKWSTSIL 679
           PLKYFEKWS S+L
Sbjct: 215 PLKYFEKWSASML 227



 Score = 40.0 bits (92), Expect(2) = 1e-76
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +1

Query: 4  FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
          +P  LG +D+ SPI+EELL   DHTL+ VFL
Sbjct: 3  YPMQLGFQDATSPIMEELLHFHDHTLMIVFL 33


>ref|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus].
          Length = 226

 Score =  280 bits (716), Expect = 3e-75
 Identities = 148/226 (65%), Positives = 167/226 (73%)
 Frame = +2

Query: 917  MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
            MNENLF SFI               FPSLLFPT  RL++NR +++QQ ++QL SKQ+++I
Sbjct: 1    MNENLFTSFITPVILGLPLVTLIVLFPSLLFPTSNRLVSNRFVTLQQWMLQLVSKQMMSI 60

Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
            HN KGQT              TN+LGLLPHSFTPTTQLS+NLG+AIPL +  V TGFR+K
Sbjct: 61   HNSKGQTWTLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGAVITGFRNK 120

Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
            TK SLAHFLPQGTP PLIPMLVIIETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121  TKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180

Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
            L++IS                 EFAVA+IQAYVFTLLVSLYLHDNT
Sbjct: 181  LMSISTTTALITFTILILLTILEFAVAMIQAYVFTLLVSLYLHDNT 226


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,793,933
Number of extensions: 1231190
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3617
Number of HSP's successfully gapped: 3
Length of query: 686
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 577
Effective length of database: 14,074,782
Effective search space: 8121149214
Effective search space used: 8121149214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000489
         (2060 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiar...   298   1e-80
Alignment   gi|NP_008474.4| cytochrome c oxidase subunit II [Canis lupus fa...   254   8e-74

>ref|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiaris].
          Length = 226

 Score =  298 bits (763), Expect = 1e-80
 Identities = 160/226 (70%), Positives = 172/226 (76%)
 Frame = +2

Query: 917  MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
            MNENLFASF A              FPS+LFPTP RLINNR ISIQQ LIQLTSKQ++AI
Sbjct: 1    MNENLFASFAAPSMMGLPIVVLIVMFPSILFPTPSRLINNRLISIQQWLIQLTSKQMLAI 60

Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
            HNQKG+T              TN+LGLLPHSFTPTTQLS+NLG+AIPL + TV TGFR+K
Sbjct: 61   HNQKGRTWALMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYK 120

Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
            TK SLAHFLPQGTP PLIPMLV+IETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121  TKASLAHFLPQGTPLPLIPMLVVIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180

Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
            L+NIS                 EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181  LINISATTAFITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226


>ref|NP_008474.4| cytochrome c oxidase subunit II [Canis lupus familiaris].
          Length = 227

 Score =  254 bits (650), Expect(2) = 8e-74
 Identities = 128/189 (67%), Positives = 146/189 (77%)
 Frame = +2

Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
           S L+  ++SL+LTTKLTHTSTMDAQEVE                      Y++DEINNP+
Sbjct: 35  SSLVLYIISLMLTTKLTHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEINNPS 94

Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
           LTVKT+GHQ            L FDSY+IPT +LKPGE+RLLEVDNRVVLP+E+TIR+L+
Sbjct: 95  LTVKTMGHQWYWSYEYTDYEDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLI 154

Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
           SSEDVLHS AVPSLGLKTDAIPGRLNQTTL++ RPGLYYGQCSEICGSNHSFMPIVLE+V
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMAMRPGLYYGQCSEICGSNHSFMPIVLEMV 214

Query: 641 PLKYFEKWS 667
           PL YFE WS
Sbjct: 215 PLSYFETWS 223



 Score = 43.1 bits (100), Expect(2) = 8e-74
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +1

Query: 4  FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
          +PF LG++D+ SPI+EELL   DHTL+ VFL
Sbjct: 3  YPFQLGLQDATSPIMEELLHFHDHTLMIVFL 33


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,862,894
Number of extensions: 1197396
Number of successful extensions: 4368
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4039
Number of HSP's successfully gapped: 3
Length of query: 686
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 576
Effective length of database: 15,207,544
Effective search space: 8759545344
Effective search space used: 8759545344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000489
         (2060 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens].         260   3e-69
Alignment   gi|YP_003024029.1| cytochrome c oxidase subunit II [Homo sapien...   208   1e-53

>ref|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens].
          Length = 226

 Score =  260 bits (665), Expect = 3e-69
 Identities = 143/226 (63%), Positives = 158/226 (69%)
 Frame = +2

Query: 917  MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
            MNENLFASFIA              FP LL PT K LINNR I+ QQ LI+LTSKQ++ +
Sbjct: 1    MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTM 60

Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
            HN KG+T              TN+LGLLPHSFTPTTQLS+NL +AIPL + TV  GFR K
Sbjct: 61   HNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSK 120

Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
             K +LAHFLPQGTP PLIPMLVIIETISL IQP+ALAVRLTANITAGHLL+HLIG ATLA
Sbjct: 121  IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSATLA 180

Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
            +  I+                 E AVALIQAYVFTLLVSLYLHDNT
Sbjct: 181  MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226


>ref|YP_003024029.1| cytochrome c oxidase subunit II [Homo sapiens].
          Length = 227

 Score =  208 bits (530), Expect = 1e-53
 Identities = 104/184 (56%), Positives = 132/184 (71%)
 Frame = +2

Query: 107 LLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPALT 286
           L+   + L LTTKLT+T+  DAQE+E                      Y+ DE+N+P+LT
Sbjct: 37  LVLYALFLTLTTKLTNTNISDAQEMETVWTILPAIILVLIALPSLRILYMTDEVNDPSLT 96

Query: 287 VKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILVSS 466
           +K+IGHQ            L F+SY++P   L+PG++RLL+VDNRVVLPIE  IR++++S
Sbjct: 97  IKSIGHQWYWTYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPIEAPIRMMITS 156

Query: 467 EDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELVPL 646
           +DVLHS AVP+LGLKTDAIPGRLNQTT  +TRPG+YYGQCSEICG+NHSFMPIVLEL+PL
Sbjct: 157 QDVLHSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFMPIVLELIPL 216

Query: 647 KYFE 658
           K FE
Sbjct: 217 KIFE 220


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,694,044
Number of extensions: 1167302
Number of successful extensions: 3666
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3606
Number of HSP's successfully gapped: 2
Length of query: 686
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 577
Effective length of database: 14,704,088
Effective search space: 8484258776
Effective search space used: 8484258776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000489
         (2060 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_904331.1| cytochrome c oxidase subunit II [Mus musculus].      255   9e-74
Alignment   gi|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus].            265   8e-71

>ref|NP_904331.1| cytochrome c oxidase subunit II [Mus musculus].
          Length = 227

 Score =  255 bits (651), Expect(2) = 9e-74
 Identities = 128/193 (66%), Positives = 147/193 (76%)
 Frame = +2

Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
           S L+  ++SL+LTTKLTHTSTMDAQEVE                      Y++DEINNP 
Sbjct: 35  SSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAVILIMIALPSLRILYMMDEINNPV 94

Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
           LTVKT+GHQ            L FDSY+IPT+DLKPGE+RLLEVDNRVVLP+E+ IR+L+
Sbjct: 95  LTVKTMGHQWYWSYEYTDYEDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLI 154

Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
           SSEDVLHS AVPSLGLKTDAIPGRLNQ T+ S RPGL+YGQCSEICGSNHSFMPIVLE+V
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFMPIVLEMV 214

Query: 641 PLKYFEKWSTSIL 679
           PLKYFE WS S++
Sbjct: 215 PLKYFENWSASMI 227



 Score = 42.4 bits (98), Expect(2) = 9e-74
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = +1

Query: 4  FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
          +PF LG++D+ SPI+EEL+   DHTL+ VFL
Sbjct: 3  YPFQLGLQDATSPIMEELMNFHDHTLMIVFL 33


>ref|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus].
          Length = 226

 Score =  265 bits (678), Expect = 8e-71
 Identities = 143/226 (63%), Positives = 160/226 (70%)
 Frame = +2

Query: 917  MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
            MNENLFASFI               FPS+LFP+ KRLINNR  S Q  L++L  KQ++ I
Sbjct: 1    MNENLFASFITPTMMGFPIVVAIIMFPSILFPSSKRLINNRLHSFQHWLVKLIIKQMMLI 60

Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
            H  KG+T              TN+LGLLPH+FTPTTQLS+NL +AIPL +  V TGFRHK
Sbjct: 61   HTPKGRTWTLMIVSLIMFIGSTNLLGLLPHTFTPTTQLSMNLSMAIPLWAGAVITGFRHK 120

Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
             K+SLAHFLPQGTP  LIPML+IIETISLFIQP+ALAVRLTANITAGHLL+HLIGGATL 
Sbjct: 121  LKSSLAHFLPQGTPISLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLV 180

Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
            L+NIS                 EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181  LMNISPPTATITFIILLLLTILEFAVALIQAYVFTLLVSLYLHDNT 226


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,649,266
Number of extensions: 996003
Number of successful extensions: 2903
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2865
Number of HSP's successfully gapped: 3
Length of query: 686
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 578
Effective length of database: 12,373,671
Effective search space: 7151981838
Effective search space used: 7151981838
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000489
         (2060 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa].              313   2e-85
Alignment   gi|NP_008637.1| cytochrome c oxidase subunit II [Sus scrofa].        279   4e-81
Alignment   gi|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa].               64   3e-10

>ref|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa].
          Length = 226

 Score =  313 bits (802), Expect = 2e-85
 Identities = 172/226 (76%), Positives = 178/226 (78%)
 Frame = +2

Query: 917  MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 1096
            MNENLFASFIA              FPSLLFPTPKRLINNRTISIQQ LIQLTSKQ++AI
Sbjct: 1    MNENLFASFIAPTMMGLPIVTLIIMFPSLLFPTPKRLINNRTISIQQWLIQLTSKQMMAI 60

Query: 1097 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRHK 1276
            HNQKGQT              TNILGLLPHSFTPTTQLS+NLG+AIPL SATVFTGFR+K
Sbjct: 61   HNQKGQTWSLMLMSLIMFIGSTNILGLLPHSFTPTTQLSMNLGMAIPLWSATVFTGFRYK 120

Query: 1277 TKTSLAHFLPQGTPAPLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 1456
            TKTSLAHFLPQGTPA LIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121  TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 180

Query: 1457 LLNISXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 1594
            LLNI+                 EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181  LLNINTMTAFITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226


>ref|NP_008637.1| cytochrome c oxidase subunit II [Sus scrofa].
          Length = 229

 Score =  279 bits (713), Expect(2) = 4e-81
 Identities = 143/195 (73%), Positives = 157/195 (80%)
 Frame = +2

Query: 101 SHLLFCVVSLILTTKLTHTSTMDAQEVEXXXXXXXXXXXXXXXXXXXXXXYIIDEINNPA 280
           S L+  ++SL+LTTKLTHTSTMDAQEVE                      Y++DEINNPA
Sbjct: 35  SSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDEINNPA 94

Query: 281 LTVKTIGHQXXXXXXXXXXXXLTFDSYIIPTSDLKPGEIRLLEVDNRVVLPIEITIRILV 460
           LTVKT+GHQ            LTFDSY+IPTSDLKPGE+RLLEVDNRVVLP+E+TIR+LV
Sbjct: 95  LTVKTMGHQWYWSYEYTDYEDLTFDSYMIPTSDLKPGEMRLLEVDNRVVLPMEMTIRMLV 154

Query: 461 SSEDVLHS*AVPSLGLKTDAIPGRLNQTTLISTRPGLYYGQCSEICGSNHSFMPIVLELV 640
           SSEDVLHS AVPSLGLKTDAIPGRLNQTTL+STRPGLYYGQCSEICGSNHSFMPIVLELV
Sbjct: 155 SSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLYYGQCSEICGSNHSFMPIVLELV 214

Query: 641 PLKYFEKWSTSILTG 685
           PLKYFEKWSTS+LTG
Sbjct: 215 PLKYFEKWSTSMLTG 229



 Score = 42.4 bits (98), Expect(2) = 4e-81
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +1

Query: 4  FPFPLGVRDSCSPIIEELLRCCDHTLLTVFL 96
          +PF LG +D+ SPI+EELL   DHTL+ VFL
Sbjct: 3  YPFQLGFQDATSPIMEELLHFHDHTLMIVFL 33


>ref|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa].
          Length = 67

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 35/58 (60%), Positives = 36/58 (62%)
 Frame = +3

Query: 756 MPQLDXXXXXXXXXXXXXXXXXXXQLKISNYSYPASPESTELKTQKHSTP*EIK*TKI 929
           MPQLD                   QLKISNYSYPASPES ELKTQKHSTP E+K TKI
Sbjct: 1   MPQLDTSTWFITITSMIMTLFILFQLKISNYSYPASPESIELKTQKHSTPWEMKWTKI 58


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,345,367
Number of extensions: 901127
Number of successful extensions: 2302
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2287
Number of HSP's successfully gapped: 4
Length of query: 686
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 580
Effective length of database: 8,704,850
Effective search space: 5048813000
Effective search space used: 5048813000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000489
         (2060 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                        1729   0.0  
Sscrofa_Chr09                                                        1005   0.0  
Sscrofa_Chr08                                                         805   0.0  
Sscrofa_ChrX                                                          761   0.0  
Sscrofa_Chr15                                                         466   e-128
Sscrofa_Chr05                                                         278   1e-71
Sscrofa_Chr11                                                         143   4e-31
Sscrofa_Chr04                                                         137   3e-29
Sscrofa_Chr13                                                         135   1e-28
Sscrofa_Chr14                                                          80   5e-12

>Sscrofa_Chr02 
||          Length = 162569375

 Score = 1729 bits (872), Expect = 0.0
 Identities = 1318/1463 (90%), Gaps = 4/1463 (0%)
 Strand = Plus / Plus

                                                                             
Query: 125       tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
                 ||||||||| |||||||||||||||||||||||||||  || |||||||||||| |||| 
Sbjct: 120053760 tcacttatattaacaacaaaactgacacacactagcatgatagatgcccaagaaatagag 120053819

                                                                             
Query: 185       acaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattacga 244
                 ||||||||||||||||| |||||||| ||||||||||| || |||||||||||| |||||
Sbjct: 120053820 acaatttgaacaatcctgcccgctatcattctaattctaatcgcccttccatcactacga 120053879

                                                                             
Query: 245       atcctttatataatagacgaaattaataacccagccttaaccgtaaaaaccataggacat 304
                 |||||||| |||||||| ||||| || || |  |||||||| |||||||| |||||||||
Sbjct: 120053880 atcctttacataatagatgaaatcaacaatctggccttaactgtaaaaactataggacat 120053939

                                                                             
Query: 305       caatgatactgaagctacgagtatacagactatgaagacctcacctttgactcatatata 364
                 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct: 120053940 caatgatactgaagctatgaatatacagactatgaagacctcacctttgactcatacata 120053999

                                                                             
Query: 365       atccccacatcagatcttaaacctggagaaatacgactactagaagtagacaatcgagtt 424
                 |||||||||||||||||||| || |||||||||||||||||||| ||||| ||||  |||
Sbjct: 120054000 atccccacatcagatcttaagcccggagaaatacgactactagaggtagataatcaggtt 120054059

                                                                             
Query: 425       gttctaccaatagaaataacaatccgaatattagtatcctctgaagacgtactgcactca 484
                 ||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||||
Sbjct: 120054060 gttctaccaatagaaataacaattcgaatattagtatcttctgaagacgtattacactca 120054119

                                                                             
Query: 485       tgagccgtcccatccctcggtttaaaaacagatgctatcccaggacgactaaaccaaaca 544
                 |||||| ||||||||||| || ||||||| |||||||| |||||||||||||||||||||
Sbjct: 120054120 tgagccatcccatccctcagtctaaaaacggatgctattccaggacgactaaaccaaaca 120054179

                                                                             
Query: 545       actctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtggatca 604
                 ||| ||||||||||||||||||| ||||| || ||||| |||||| | |||| ||| |||
Sbjct: 120054180 actttaatatccacacgacctggtctttactatggacaatgctcaaagatctatgggtca 120054239

                                                                             
Query: 605       aaccacagcttcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatgg 664
                 ||||||||||| || ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 120054240 aaccacagctttatacccattgtactcgagcttgttccattaaagtacttcgaaaaatgg 120054299

                                                                             
Query: 665       tcaacatcaatattaacaggttcattgagatgctagtcagcactaaccttttaagttaga 724
                  |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 120054300 acaacatcaatattaacaggttcatcgagaagctagtcagcactaaccttttaagttaga 120054359

                                                                             
Query: 725       gatcgggagcctaaatctcccctcaatggttatgccacaactagatacatctacatgatt 784
                 |||||||||| |||| |||||||||||||  ||||||||| |||| ||||||||||||||
Sbjct: 120054360 gatcgggagcttaaacctcccctcaatggg-atgccacaattagacacatctacatgatt 120054418

                                                                             
Query: 785       cattacaattacatcaataattataacattatttattttattccaactaaaaatctcaaa 844
                 ||||||||||| ||||||| || || |  ||||||||||||| |||||||||||||||||
Sbjct: 120054419 cattacaattatatcaatacttgtaccgctatttattttatttcaactaaaaatctcaaa 120054478

                                                                             
Query: 845       ctactcatacccagcaagcccagaatcaaccgaactcaaaactcaaaaacatagcacccc 904
                 ||| |||||||||  ||| |||||||||   |||||||| |||||||||||||  |||||
Sbjct: 120054479 ctattcatacccaataagtccagaatcagttgaactcaagactcaaaaacataatacccc 120054538

                                                                             
Query: 905       ttgagaaataaaatgaacgaaaatctatttgcctctttcattgcccctacgataatagga 964
                  ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 120054539 ctgagaaataaa-tgaacgaaaatctatttgcctctttcattacccctacgataatagga 120054597

                                                                             
Query: 965       ctacctattgtcaccttaattattatattcccaagcttactattcccaacacccaaacga 1024
                 |||||||| ||||||||||||||||||||||| ||| || |||||||| |||| ||||||
Sbjct: 120054598 ctacctatcgtcaccttaattattatattccccagcctattattcccagcacctaaacga 120054657

                                                                             
Query: 1025      ctcattaataaccgcacaatctcgatccaacaatgattaatccaactaacatccaaacaa 1084
                 || |||||||| || |  ||||| || ||||| |||||||||||| ||||||||||||||
Sbjct: 120054658 cttattaataatcgtatgatctctattcaacagtgattaatccaattaacatccaaacaa 120054717

                                                                             
Query: 1085      ataatagctattcacaaccaaaaaggccaaacctgatcactaatacttatatctctaatt 1144
                 |||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||| 
Sbjct: 120054718 ataatagctattcataaccaaaaaggccaaacctgatcactgatactcatgtctctaatc 120054777

                                                                             
Query: 1145      atattcattggctcaacaaacatcctaggcctactaccacactcattcacacccaccaca 1204
                 ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct: 120054778 atatttattggctcaacaaatatcctaggtctactaccacactcattcacacctaccaca 120054837

                                                                             
Query: 1205      caactatcaataaacctgggtatagcaatccccctatgatcagcaaccgtattcacagga 1264
                 || ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 120054838 cagctatcaataaacctgggcatagcaattcccctatgatcagcaactgtatttacagga 120054897

                                                                             
Query: 1265      ttccgccataaaaccaaaacatcactagcccactttctaccacaaggaacacccgcccca 1324
                 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 120054898 ttccgccataaaaccaaagcatcactagcccactttttaccacaaggaacacccgctcca 120054957

                                                                             
Query: 1325      ttaattcctatgctcgtaattattgaaactattagcctatttattcaaccagtagcccta 1384
                  |||||||||| |||||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct: 120054958 ctaattcctatactcgtaatcattgaaaccattaacctatttattcaaccagtggcccta 120055017

                                                                             
Query: 1385      gccgtacgactgacagccaacattacagcagggcacctattaattcatctaattggaggg 1444
                 ||||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct: 120055018 gccgtacgactaacagccaatattacagcagggcacctactaattcacctaattggaggg 120055077

                                                                             
Query: 1445      gccacattagcactactcaacatcagcactataacagcttttatcacatttactatcctc 1504
                 ||||| ||||||||||| || |||||||| |||||||| ||  ||||||| |  ||||| 
Sbjct: 120055078 gccaccttagcactacttaatatcagcaccataacagccttcgtcacattcatcatcctt 120055137

                                                                             
Query: 1505      atcctattaactattcttgaatttgcagtagctctgatccaagcttatgtgtttacactg 1564
                 ||||||||||| |||||||| || ||||||||||| |||||||| ||||| ||  |||  
Sbjct: 120055138 atcctattaaccattcttgagttcgcagtagctctaatccaagcctatgtatt--cacat 120055195

                                        
Query: 1565      ctagtaagcttatacctacacga 1587
                 |||||||||||||| ||||||||
Sbjct: 120055196 ctagtaagcttatatctacacga 120055218



 Score =  458 bits (231), Expect = e-126
 Identities = 315/343 (91%)
 Strand = Plus / Plus

                                                                             
Query: 1253      gtattcacaggattccgccataaaaccaaaacatcactagcccactttctaccacaagga 1312
                 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 136867733 gtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaagga 136867792

                                                                             
Query: 1313      acacccgccccattaattcctatgctcgtaattattgaaactattagcctatttattcaa 1372
                 |||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 136867793 acacccgctccattaatccctatgctcgtaatcattgaaaccattagcctatttattcaa 136867852

                                                                             
Query: 1373      ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 1432
                 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 136867853 ccagtagccctagccgtacgactgacagccaacatcacagcagggcacctattaattcac 136867912

                                                                             
Query: 1433      ctaattggaggggccacattagcactactcaacatcagcactataacagcttttatcaca 1492
                 |||| |||||||||||| || |||||||||||||||||||| |||||||| ||  |||||
Sbjct: 136867913 ctaactggaggggccaccttggcactactcaacatcagcaccataacagccttcgtcaca 136867972

                                                                             
Query: 1493      tttactatcctcatcctattaactattcttgaatttgcagtagctctgatccaagcttat 1552
                 |||| ||| || || ||||| || |||||||| |||||||||| ||| |||||||| |||
Sbjct: 136867973 tttattattcttattctattgaccattcttgagtttgcagtaggtctaatccaagcctat 136868032

                                                            
Query: 1553      gtgtttacactgctagtaagcttatacctacacgacaatacat 1595
                 || ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 136868033 gtatttacactgctagtaagcttatatctacacgataatacat 136868075


>Sscrofa_Chr09 
||          Length = 153670197

 Score = 1005 bits (507), Expect = 0.0
 Identities = 610/643 (94%), Gaps = 1/643 (0%)
 Strand = Plus / Plus

                                                                             
Query: 255       taatagacgaaattaataacccagccttaaccgtaaaaaccataggacatcaatgatact 314
                 |||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 130332532 taatagacgaaattaacaatccagccttaactgtaaaaaccataggacaccaatgatact 130332591

                                                                             
Query: 315       gaagctacgagtatacagactatgaagacctcacctttgactcatatataatccccacat 374
                 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 130332592 gaagctacgagtatacagactatgaagacctcacctttgactcatatatagtccccacat 130332651

                                                                             
Query: 375       cagatcttaaacctggagaaatacgactactagaagtagacaatcgagttgttctaccaa 434
                 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 130332652 cagatcttaaacccggagagatacgactactagaggtagacaatcgagttgttctaccaa 130332711

                                                                             
Query: 435       tagaaataacaatccgaatattagtatcctctgaagacgtactgcactcatgagccgtcc 494
                 |||| |||||||| ||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct: 130332712 tagagataacaattcgaatattagtgtcttctgaagacgtattacactcatgagccgtcc 130332771

                                                                             
Query: 495       catccctcggtttaaaaacagatgctatcccaggacgactaaaccaaacaactctaatat 554
                 ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 130332772 catccctcggtctaaaaacggatgctattccaggacgactaaaccaaacaactctaatat 130332831

                                                                             
Query: 555       ccacacgacctggcctttattacggacagtgctcagaaatctgtggatcaaaccacagct 614
                 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 130332832 ccacacgacctggtctttattacggacaatgctcagaaatctgtggatcaaaccacggct 130332891

                                                                             
Query: 615       tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacatcaa 674
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 130332892 tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacgtcaa 130332951

                                                                             
Query: 675       tattaacaggttcattgagatgctagtcagcactaaccttttaagttagagatcgggagc 734
                 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 130332952 tattaacaggttcattgagaagctagtcagaactaaccttttaagttagagatcgggagc 130333011

                                                                             
Query: 735       ctaaatctcccctcaatggttatgccacaactagatacatctacatgattcattacaatt 794
                  |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct: 130333012 ttaaatctcccctcaatgg-tatgccacaattagacacatctacatgattcattacaatt 130333070

                                                                             
Query: 795       acatcaataattataacattatttattttattccaactaaaaatctcaaactactcatac 854
                 | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130333071 atatcaataattatgacattatttattttattccaactaaaaatctcaaactactcatac 130333130

                                                            
Query: 855       ccagcaagcccagaatcaaccgaactcaaaactcaaaaacata 897
                 ||| |||||||||||||||  || |||||||||||||||||||
Sbjct: 130333131 ccaacaagcccagaatcaattgagctcaaaactcaaaaacata 130333173



 Score = 1005 bits (507), Expect = 0.0
 Identities = 610/643 (94%), Gaps = 1/643 (0%)
 Strand = Plus / Plus

                                                                             
Query: 255       taatagacgaaattaataacccagccttaaccgtaaaaaccataggacatcaatgatact 314
                 |||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 130436963 taatagacgaaattaacaatccagccttaactgtaaaaaccataggacaccaatgatact 130437022

                                                                             
Query: 315       gaagctacgagtatacagactatgaagacctcacctttgactcatatataatccccacat 374
                 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 130437023 gaagctacgagtatacagactatgaagacctcacctttgactcatatatagtccccacat 130437082

                                                                             
Query: 375       cagatcttaaacctggagaaatacgactactagaagtagacaatcgagttgttctaccaa 434
                 ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 130437083 cagatcttaaacccggagagatacgactactagaggtagacaatcgagttgttctaccaa 130437142

                                                                             
Query: 435       tagaaataacaatccgaatattagtatcctctgaagacgtactgcactcatgagccgtcc 494
                 |||| |||||||| ||||||||||| || |||||||||||| | ||||||||||||||||
Sbjct: 130437143 tagagataacaattcgaatattagtgtcttctgaagacgtattacactcatgagccgtcc 130437202

                                                                             
Query: 495       catccctcggtttaaaaacagatgctatcccaggacgactaaaccaaacaactctaatat 554
                 ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 130437203 catccctcggtctaaaaacggatgctattccaggacgactaaaccaaacaactctaatat 130437262

                                                                             
Query: 555       ccacacgacctggcctttattacggacagtgctcagaaatctgtggatcaaaccacagct 614
                 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 130437263 ccacacgacctggtctttattacggacaatgctcagaaatctgtggatcaaaccacggct 130437322

                                                                             
Query: 615       tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacatcaa 674
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 130437323 tcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatggtcaacgtcaa 130437382

                                                                             
Query: 675       tattaacaggttcattgagatgctagtcagcactaaccttttaagttagagatcgggagc 734
                 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 130437383 tattaacaggttcattgagaagctagtcagaactaaccttttaagttagagatcgggagc 130437442

                                                                             
Query: 735       ctaaatctcccctcaatggttatgccacaactagatacatctacatgattcattacaatt 794
                  |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct: 130437443 ttaaatctcccctcaatgg-tatgccacaattagacacatctacatgattcattacaatt 130437501

                                                                             
Query: 795       acatcaataattataacattatttattttattccaactaaaaatctcaaactactcatac 854
                 | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130437502 atatcaataattatgacattatttattttattccaactaaaaatctcaaactactcatac 130437561

                                                            
Query: 855       ccagcaagcccagaatcaaccgaactcaaaactcaaaaacata 897
                 ||| |||||||||||||||  || |||||||||||||||||||
Sbjct: 130437562 ccaacaagcccagaatcaattgagctcaaaactcaaaaacata 130437604


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  805 bits (406), Expect = 0.0
 Identities = 586/646 (90%)
 Strand = Plus / Plus

                                                                            
Query: 950      cctacgataataggactacctattgtcaccttaattattatattcccaagcttactattc 1009
                ||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct: 34034136 cctacgataataggactacctattgtcaccttaattattatattccccagcctattattc 34034195

                                                                            
Query: 1010     ccaacacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaa 1069
                ||| ||||||||||||| |||||||| ||||  ||||| || ||||||||||| ||||||
Sbjct: 34034196 ccagcacccaaacgacttattaataatcgcatgatctccattcaacaatgattgatccaa 34034255

                                                                            
Query: 1070     ctaacatccaaacaaataatagctattcacaaccaaaaaggccaaacctgatcactaata 1129
                 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 34034256 ttaacatccaaacaaataatagctattcacaaccaaaaaggccaaacctggtcactgata 34034315

                                                                            
Query: 1130     cttatatctctaattatattcattggctcaacaaacatcctaggcctactaccacactca 1189
                || ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 34034316 ctcatatctctaatcatatttattggctcaacaaatatcctaggtctactaccacactca 34034375

                                                                            
Query: 1190     ttcacacccaccacacaactatcaataaacctgggtatagcaatccccctatgatcagca 1249
                |||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 34034376 ttcacacctaccacacagctatcaataaacctgggcatagcaattcccctatgatcagca 34034435

                                                                            
Query: 1250     accgtattcacaggattccgccataaaaccaaaacatcactagcccactttctaccacaa 1309
                || ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 34034436 actgtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaa 34034495

                                                                            
Query: 1310     ggaacacccgccccattaattcctatgctcgtaattattgaaactattagcctatttatt 1369
                |||||| |||| ||| | ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 34034496 ggaacatccgctccactgattcctatgctcgtaatcattgaaaccattagcctatttatt 34034555

                                                                            
Query: 1370     caaccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaatt 1429
                |||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||  |||||
Sbjct: 34034556 caaccagtggccctagccgtaccactaacagccaacatcacagcagggcacctgctaatt 34034615

                                                                            
Query: 1430     catctaattggaggggccacattagcactactcaacatcagcactataacagcttttatc 1489
                || ||||||||||||||||| || |||||||||| ||||||||| |||||||| ||  ||
Sbjct: 34034616 cacctaattggaggggccaccttggcactactcagcatcagcaccataacagccttcgtc 34034675

                                                                            
Query: 1490     acatttactatcctcatcctattaactattcttgaatttgcagtagctctgatccaagct 1549
                ||||||| ||| || || ||||| || |||||||| || ||||||||||| |||||||| 
Sbjct: 34034676 acatttattattcttattctattgaccattcttgagttcgcagtagctctaatccaagcc 34034735

                                                              
Query: 1550     tatgtgtttacactgctagtaagcttatacctacacgacaatacat 1595
                ||||| || |||||||||||||||||||| |||||||| |||||||
Sbjct: 34034736 tatgtattcacactgctagtaagcttatatctacacgataatacat 34034781


>Sscrofa_ChrX 
||          Length = 144288218

 Score =  761 bits (384), Expect = 0.0
 Identities = 1206/1474 (81%), Gaps = 12/1474 (0%)
 Strand = Plus / Plus

                                                                            
Query: 125      tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
                ||||| ||| |||||||||||||||||||||| ||||| || ||  ||||||| ||||||
Sbjct: 23494742 tcactcatattaacaacaaaactgacacacaccagcactatagacacccaagaggtagaa 23494801

                                                                            
Query: 185      acaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattacga 244
                ||||| ||||||||| |||   | |||||| | ||| | |||||||| || ||  |||||
Sbjct: 23494802 acaatctgaacaatcttacagaccattattttgattttaattgccctgccttctctacga 23494861

                                                                            
Query: 245      atcctttatataatagacgaaattaataacccagccttaaccgtaaaaaccataggacat 304
                || || ||||| ||||| ||||||||||||||| |||||||| ||||||  ||||| |||
Sbjct: 23494862 attctatatatgatagatgaaattaataacccatccttaaccataaaaataatagggcat 23494921

                                                                            
Query: 305      caatgatactgaagctacgagtatacagactatgaagacctcacctttgactcatatata 364
                || |||||||||||||| ||||| ||||| ||| |||| || || ||  |||||||||||
Sbjct: 23494922 cactgatactgaagctatgagtacacagattataaagatcttactttcaactcatatata 23494981

                                                                            
Query: 365      atccccacatcagatcttaaacctggagaaatacgactactagaagtagacaatcgagtt 424
                ||||||||||| || || ||||| ||||| |||||||||||||||   |||||| |||| 
Sbjct: 23494982 atccccacatccgacctgaaacccggagagatacgactactagaaacggacaattgagta 23495041

                                                                            
Query: 425      gttctaccaatagaaataacaatccgaatattagtatcctctgaagacgtactgcactca 484
                ||  |||||||||| || |||||  ||||  | |  || ||||| || ||  | ||||||
Sbjct: 23495042 gtcttaccaatagagatgacaatttgaatgctggcctcttctgaggatgtcttacactca 23495101

                                                                            
Query: 485      tgagccgtcccatccctcggtttaaaaacagatgctatcccaggacgactaaaccaaaca 544
                | |||| | | ||| || ||  |||||||||||||||||||||| ||||| || || |||
Sbjct: 23495102 taagccatacaatcactaggcctaaaaacagatgctatcccagggcgactgaatcagaca 23495161

                                                                            
Query: 545      actctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtggatca 604
                ||| |||| || || |||||||| |||||||||||||| |||||||| ||||| || |||
Sbjct: 23495162 actataatgtcaacgcgacctggtctttattacggacaatgctcagagatctgcgggtca 23495221

                                                                            
Query: 605      aaccacagcttcatgcccattgtacttgaacttgtcccattaaagtacttcgaaaaatgg 664
                ||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||
Sbjct: 23495222 aaccacagcttcatgcccattgtgctggaacttgttccactaaagtacttcgaaaaatgg 23495281

                                                                            
Query: 665      tcaacatcaatattaacaggttcattgagatgctagtcagcactaaccttttaagttaga 724
                ||| |||||||||||||||||||||||||| |||| | ||| ||||||||||      ||
Sbjct: 23495282 tcagcatcaatattaacaggttcattgagaagctaattagcgctaacctttt------ga 23495335

                                                                            
Query: 725      gatcgggagcctaaatctcccctcaatggttatgccacaactagatacatctacatgatt 784
                ||  |||||  ||| |||||||| |||| | |||||||||||||||||||||||||||||
Sbjct: 23495336 gactgggagt-taagtctccccttaatgat-atgccacaactagatacatctacatgatt 23495393

                                                                            
Query: 785      cattacaattacatcaataattataacattatttattttattccaactaaaaatctcaaa 844
                ||| || |||  | ||||||| |||      || || ||||| ||| ||||| |||||||
Sbjct: 23495394 catcactattttaccaataataatagttcctttcatcttatttcaattaaaagtctcaaa 23495453

                                                                            
Query: 845      ctactcatacccagcaagcccagaatcaaccgaactcaaaact-caaaaacatagca--c 901
                |||  | |||||    ||||||||  |||| ||| || ||| | |||||||| |||   |
Sbjct: 23495454 ctatacttaccctatgagcccagagccaactgaa-tctaaagtacaaaaacaaagcttgc 23495512

                                                                            
Query: 902      cccttgagaaataaaatgaacgaaaatctatttgcctctttcattgcccctacgataata 961
                ||||||||||| ||||||||| ||||  ||||||||||||||||| |||||| |||||||
Sbjct: 23495513 cccttgagaaacaaaatgaacaaaaaattatttgcctctttcattacccctatgataata 23495572

                                                                            
Query: 962      ggactacctattgtcaccttaattattatattcccaagcttactattcccaacacccaaa 1021
                |||||||| ||  || | ||||| || || ||||||||| ||||||| ||  |||| |||
Sbjct: 23495573 ggactacccatcctctctttaatcatcatgttcccaagcctactatttcctgcacctaaa 23495632

                                                                            
Query: 1022     cgactcattaataaccgcacaatctcgatccaacaatgattaatccaactaacatccaaa 1081
                 | || ||||| || ||||   ||||  | |||||||||||| ||||||| ||||| |||
Sbjct: 23495633 tggctaattaacaatcgcatggtctctgttcaacaatgattagtccaactcacatctaaa 23495692

                                                                            
Query: 1082     caaataatagctattcacaaccaaaaaggccaaacctgatcactaatacttatatctcta 1141
                ||||| | ||| |||||||| ||||| | |||||||||| |||| ||| ||||||| |||
Sbjct: 23495693 caaatgacagccattcacaatcaaaaggaccaaacctgagcactcatatttatatcccta 23495752

                                                                            
Query: 1142     attatattcattggctcaacaaacatcctaggcctactaccacactcattcacacccacc 1201
                |||||||| |||||||||||||||||| |||| |||| |||||| ||||||||||| || 
Sbjct: 23495753 attatatttattggctcaacaaacatcttaggtctaccaccacattcattcacacctaca 23495812

                                                                            
Query: 1202     acacaactatcaataaacctgggtatagcaatccccctatgatcagcaaccgtattcaca 1261
                ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| 
Sbjct: 23495813 acacaactatcaataaacctgggcatggcaatccccctgtgatcagcaaccgtattcacg 23495872

                                                                            
Query: 1262     ggattccgccataaaaccaaaacatcactagcccactttctaccacaaggaacacccgcc 1321
                ||||||| |   ||||| ||| ||||| | ||||| |||||||||||||||||||| |||
Sbjct: 23495873 ggattcctcttcaaaactaaagcatcattggcccattttctaccacaaggaacaccagcc 23495932

                                                                            
Query: 1322     ccattaattcctatgctcgtaattattgaaactattagcctatttattcaaccagtagcc 1381
                ||  | ||||| || |  |||||||| ||||| || ||||| ||||||||||  ||||||
Sbjct: 23495933 ccgctgattccaatacgtgtaattatcgaaacgataagcctgtttattcaactggtagcc 23495992

                                                                            
Query: 1382     ctagccgtacgactgacagccaacattacagcagggcacctattaattcatctaattgga 1441
                || || ||| | || ||||| ||||  |||||||| ||  || | ||||| ||||||| |
Sbjct: 23495993 ctggctgtatggctaacagctaacaacacagcaggacatttactgattcacctaattgaa 23496052

                                                                            
Query: 1442     ggggccacattagcactactcaacatcagcactataacagcttttatcacatttactatc 1501
                || ||||| ||||||||||||| |||||||||   || |||  | |||||||||| ||| 
Sbjct: 23496053 ggagccactttagcactactcagcatcagcaccgcaatagccctcatcacatttattatt 23496112

                                                                            
Query: 1502     ctcatcctattaactattcttgaatttgcagtagctctgatccaagcttatgtgtttaca 1561
                |||||| |  ||||| | ||||| ||||| |||||||| |||||||| ||||| ||||||
Sbjct: 23496113 ctcatcttgctaactgtccttgagtttgccgtagctctaatccaagcctatgtatttaca 23496172

                                                  
Query: 1562     ctgctagtaagcttatacctacacgacaatacat 1595
                 | || |||||  |||||||||| ||||| ||||
Sbjct: 23496173 ttactggtaagactatacctacatgacaacacat 23496206



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 114/139 (82%), Gaps = 2/139 (1%)
 Strand = Plus / Minus

                                                                            
Query: 123      tttcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtag 182
                ||||||||||||||| | | ||| | ||||| || || ||||  ||| | ||| ||||||
Sbjct: 31058304 tttcacttatactaatagctaaattaacacatacaagtacaacagattcacaataagtag 31058245

                                                                            
Query: 183      aaacaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattac 242
                ||| ||||||||||||| ||  || ||||||| ||||||| |||||||| ||||||||||
Sbjct: 31058244 aaaaaatttgaacaatctta--cgttattattttaattctaattgccctaccatcattac 31058187

                                   
Query: 243      gaatcctttatataataga 261
                 ||| ||||| || |||||
Sbjct: 31058186 aaattctttacattataga 31058168



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 114/139 (82%), Gaps = 2/139 (1%)
 Strand = Plus / Plus

                                                                            
Query: 123      tttcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtag 182
                ||||||||||||||| | | ||| | ||||| || || ||||  ||| | ||| ||||||
Sbjct: 31252024 tttcacttatactaatagctaaattaacacatacaagtacaacagattcacaataagtag 31252083

                                                                            
Query: 183      aaacaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattac 242
                ||| ||||||||||||| ||  || ||||||| ||||||| |||||||| ||||||||||
Sbjct: 31252084 aaaaaatttgaacaatctta--cgttattattttaattctaattgccctaccatcattac 31252141

                                   
Query: 243      gaatcctttatataataga 261
                 ||| ||||| || |||||
Sbjct: 31252142 aaattctttacattataga 31252160


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  466 bits (235), Expect = e-128
 Identities = 316/343 (92%)
 Strand = Plus / Plus

                                                                             
Query: 1253      gtattcacaggattccgccataaaaccaaaacatcactagcccactttctaccacaagga 1312
                 |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 100012155 gtattcacagtattccgccataaaaccaaagcatcactagcccacttcctaccacaagga 100012214

                                                                             
Query: 1313      acacccgccccattaattcctatgctcgtaattattgaaactattagcctatttattcaa 1372
                 ||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 100012215 acacccgccccattaatccctatgcttgtaatcattgaaaccattagcctatttattcaa 100012274

                                                                             
Query: 1373      ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 1432
                 ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| 
Sbjct: 100012275 ccagtagccctagccgtacgactaacagccaacatcacagcaggacacctattaattcac 100012334

                                                                             
Query: 1433      ctaattggaggggccacattagcactactcaacatcagcactataacagcttttatcaca 1492
                 ||||||||||| ||||| || |||||||||||||||||||| |||||||||||  |||||
Sbjct: 100012335 ctaattggaggagccaccttggcactactcaacatcagcaccataacagctttcgtcaca 100012394

                                                                             
Query: 1493      tttactatcctcatcctattaactattcttgaatttgcagtagctctgatccaagcttat 1552
                 |||| ||| || || ||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 100012395 tttattattcttattctattgactcttcttgagtttgcagtagctctgatccaagcttat 100012454

                                                            
Query: 1553      gtgtttacactgctagtaagcttatacctacacgacaatacat 1595
                 || ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 100012455 gtatttacactgctagtaagcttatatctacacgataatacat 100012497



 Score =  180 bits (91), Expect = 2e-42
 Identities = 151/171 (88%)
 Strand = Plus / Minus

                                                                             
Query: 950       cctacgataataggactacctattgtcaccttaattattatattcccaagcttactattc 1009
                 ||||||||| ||||||||||||||||||| ||||||||||| ||||| || |||||||| 
Sbjct: 110783082 cctacgatagtaggactacctattgtcactttaattattatgttccctagtttactattt 110783023

                                                                             
Query: 1010      ccaacacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaa 1069
                 |||||| ||||| |||| ||||||||||| | |||||| || ||||||||| ||||||||
Sbjct: 110783022 ccaacatccaaaggactaattaataaccgtataatctccattcaacaatgactaatccaa 110782963

                                                                    
Query: 1070      ctaacatccaaacaaataatagctattcacaaccaaaaaggccaaacctga 1120
                 |||||||| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct: 110782962 ctaacatctaaacaaataatagccattcacaatcgaaaaggtcagacctga 110782912


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  278 bits (140), Expect = 1e-71
 Identities = 173/184 (94%)
 Strand = Plus / Minus

                                                                            
Query: 420      gagttgttctaccaatagaaataacaatccgaatattagtatcctctgaagacgtactgc 479
                ||||||||||||||||||| |||||||| ||||||||||| || |||||||||||| | |
Sbjct: 63934066 gagttgttctaccaatagagataacaattcgaatattagtgtcttctgaagacgtattac 63934007

                                                                            
Query: 480      actcatgagccgtcccatccctcggtttaaaaacagatgctatcccaggacgactaaacc 539
                |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct: 63934006 actcatgagccgtcccatccctcggtctaaaaacggatgctattccaggacgactaaacc 63933947

                                                                            
Query: 540      aaacaactctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtg 599
                |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 63933946 aaacaactctaatatccacacgacctggtctttattacggacaatgctcagaaatctgtg 63933887

                    
Query: 600      gatc 603
                ||||
Sbjct: 63933886 gatc 63933883


>Sscrofa_Chr11 
||          Length = 87690581

 Score =  143 bits (72), Expect = 4e-31
 Identities = 125/140 (89%), Gaps = 2/140 (1%)
 Strand = Plus / Plus

                                                                            
Query: 645      taaagtacttcgaaaaatggtcaacatcaatattaacaggttcattgagatgctagtcag 704
                ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||
Sbjct: 47357817 taaagtacttcaaaaaatggtcaacatcaacattaacaggttcattgagaagctagttag 47357876

                                                                            
Query: 705      cactaaccttttaagttagagatcgggagcctaaatctcccctcaatggttatgccacaa 764
                ||||||||||||||||||||||| ||| |   | | || |||||||| | ||||||||||
Sbjct: 47357877 cactaaccttttaagttagagattggg-gttcagaccttccctcaat-gatatgccacaa 47357934

                                    
Query: 765      ctagatacatctacatgatt 784
                 |||||||||||||||||||
Sbjct: 47357935 ttagatacatctacatgatt 47357954



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                           
Query: 1454    gcactactcaacatcagcactataacagcttttatcacatttactatcctcatcctatta 1513
               ||||||||||| |||||||||| ||| | | ||||| |||||| ||| |||||| || | 
Sbjct: 5156448 gcactactcaatatcagcactacaacggatcttatcgcatttattattctcatcttactt 5156389

                                                                           
Query: 1514    actattcttgaatttgcagtagctctgatccaagcttatgtgtttacactgctagtaagc 1573
               ||||| |||| |||||| |||||||| || ||||| || || ||||| || |||| ||||
Sbjct: 5156388 actatccttgcatttgctgtagctctaattcaagcgtacgtctttaccctactagcaagc 5156329


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  137 bits (69), Expect = 3e-29
 Identities = 117/133 (87%)
 Strand = Plus / Plus

                                                                             
Query: 125       tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
                 ||||| || |||||||||||| |||||||||| ||||| || |||||||||||||| || 
Sbjct: 126092312 tcactaatgctaacaacaaaattgacacacaccagcaccatagatgcccaagaagtggag 126092371

                                                                             
Query: 185       acaatttgaacaatcctacccgctattattctaattcttattgcccttccatcattacga 244
                  |||| ||||||||||| |||||||||||||||||| | |||||||| || ||| |||||
Sbjct: 126092372 gcaatctgaacaatcctgcccgctattattctaattttaattgccctaccttcactacga 126092431

                              
Query: 245       atcctttatataa 257
                 |||||||||||||
Sbjct: 126092432 atcctttatataa 126092444



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                            
Query: 542      acaactctaatatccacacgacctggcctttattacggacagtgctcagaaatctgtgga 601
                ||||| ||||| || |||||||| || ||||| || ||||| ||||||||||||||||| 
Sbjct: 72802874 acaaccctaatgtcaacacgaccaggtctttactatggacaatgctcagaaatctgtggg 72802815

                                                               
Query: 602      tcaaaccacagcttcatgcccattgtacttgaacttgtcccattaaa 648
                || ||||||||||  ||||| ||||| || ||||| || ||||||||
Sbjct: 72802814 tccaaccacagctctatgcctattgtcctagaactggttccattaaa 72802768


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  135 bits (68), Expect = 1e-28
 Identities = 131/152 (86%)
 Strand = Plus / Plus

                                                                           
Query: 1042    aatctcgatccaacaatgattaatccaactaacatccaaacaaataatagctattcacaa 1101
               |||||| ||||||||||| ||||| | |||||||||||||||||||| ||| ||||| ||
Sbjct: 3918295 aatctctatccaacaatggttaattccactaacatccaaacaaataacagccattcataa 3918354

                                                                           
Query: 1102    ccaaaaaggccaaacctgatcactaatacttatatctctaattatattcattggctcaac 1161
                |||||||| || ||| || |||||||||||||||| || || ||||| |||||||||||
Sbjct: 3918355 tcaaaaaggtcagaccagagcactaatacttatatccctcatcatatttattggctcaac 3918414

                                               
Query: 1162    aaacatcctaggcctactaccacactcattca 1193
               ||| || || || ||| |||||||||||||||
Sbjct: 3918415 aaatattctgggtctattaccacactcattca 3918446



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 82/99 (82%)
 Strand = Plus / Plus

                                                                           
Query: 901     ccccttgagaaataaaatgaacgaaaatctatttgcctctttcattgcccctacgataat 960
               |||||||||||| ||||||||  ||||  |||||| |||||||||  || | ||  ||||
Sbjct: 7558192 ccccttgagaaacaaaatgaataaaaaattatttggctctttcatcacctcaacattaat 7558251

                                                      
Query: 961     aggactacctattgtcaccttaattattatattcccaag 999
               |||| ||||||||| ||| ||||| |||||||| |||||
Sbjct: 7558252 aggattacctattgccactttaatcattatatttccaag 7558290


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 90/106 (84%), Gaps = 3/106 (2%)
 Strand = Plus / Plus

                                                                            
Query: 125      tcacttatactaacaacaaaactgacacacactagcacaatggatgcccaagaagtagaa 184
                ||||| ||||||||||||||| |||||| ||| ||||| || |||||||   |||| || 
Sbjct: 91005431 tcactaatactaacaacaaaattgacacgcaccagcaccatagatgccc---aagtggag 91005487

                                                              
Query: 185      acaatttgaacaatcctacccgctattattctaattcttattgccc 230
                ||||| ||||||||||| ||| |||||||||||||| | |||||||
Sbjct: 91005488 acaatctgaacaatcctgcccactattattctaattttaattgccc 91005533


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,349,570
Number of extensions: 371
Number of successful extensions: 371
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 25
Length of query: 2060
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2038
Effective length of database: 2,808,408,574
Effective search space: 5723536673812
Effective search space used: 5723536673812
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)