Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000498
(703 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001181980.1| hypothetical protein LOC617407 [Bos taurus]. 86 2e-17
>ref|NP_001181980.1| hypothetical protein LOC617407 [Bos taurus].
Length = 57
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +2
Query: 50 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,081,817
Number of extensions: 585591
Number of successful extensions: 1486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1486
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 135
Effective length of database: 14,405,662
Effective search space: 1944764370
Effective search space used: 1944764370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000498
(703 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539471.2| PREDICTED: similar to CG17059-PA [Canis familia... 83 3e-16
>ref|XP_539471.2| PREDICTED: similar to CG17059-PA [Canis familiaris].
Length = 57
Score = 82.8 bits (203), Expect = 3e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +2
Query: 50 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
MKPA DEMFPEG GPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1 MKPAADEMFPEGPGPYVDLDEAGGSTGLLMDLAANEKAVHA 41
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,627,067
Number of extensions: 512732
Number of successful extensions: 1661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1661
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 135
Effective length of database: 15,574,240
Effective search space: 2102522400
Effective search space used: 2102522400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000498
(703 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156896.1| hypothetical protein LOC150678 isoform 2 [Ho... 86 2e-17
Alignment gi|NP_612209.1| hypothetical protein LOC150678 isoform 1 [Homo ... 83 3e-16
>ref|NP_001156896.1| hypothetical protein LOC150678 isoform 2 [Homo sapiens].
Length = 57
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +2
Query: 50 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41
>ref|NP_612209.1| hypothetical protein LOC150678 isoform 1 [Homo sapiens].
Length = 252
Score = 82.8 bits (203), Expect = 3e-16
Identities = 47/63 (74%), Positives = 47/63 (74%), Gaps = 10/63 (15%)
Frame = +2
Query: 14 EVDRERPGLQEEMKPAVDEMFPEGAGPYVDLDE----------AGGSTGLLMDLAANEKA 163
EV ER G EMKPAVDEMFPEGAGPYVDLDE AGGSTGLLMDLAANEKA
Sbjct: 12 EVSLERRG--PEMKPAVDEMFPEGAGPYVDLDEVARARRESPSAGGSTGLLMDLAANEKA 69
Query: 164 VHA 172
VHA
Sbjct: 70 VHA 72
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 21,975,169
Number of extensions: 487798
Number of successful extensions: 1612
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 135
Effective length of database: 15,033,728
Effective search space: 2029553280
Effective search space used: 2029553280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000498
(703 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156897.1| hypothetical protein LOC66915 [Mus musculus]. 86 2e-17
>ref|NP_001156897.1| hypothetical protein LOC66915 [Mus musculus].
Length = 57
Score = 86.3 bits (212), Expect = 2e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +2
Query: 50 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 18,465,670
Number of extensions: 409220
Number of successful extensions: 1349
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 136
Effective length of database: 12,674,031
Effective search space: 1723668216
Effective search space used: 1723668216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000498
(703 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359755.1| PREDICTED: myeloma-overexpressed gene 2 prot... 86 1e-17
Alignment gi|XP_003359754.1| PREDICTED: myeloma-overexpressed gene 2 prot... 86 1e-17
>ref|XP_003359755.1| PREDICTED: myeloma-overexpressed gene 2 protein homolog isoform 2
[Sus scrofa].
Length = 114
Score = 86.3 bits (212), Expect = 1e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +2
Query: 50 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41
>ref|XP_003359754.1| PREDICTED: myeloma-overexpressed gene 2 protein homolog isoform 1
[Sus scrofa].
Length = 57
Score = 86.3 bits (212), Expect = 1e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = +2
Query: 50 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1 MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,150,075
Number of extensions: 517132
Number of successful extensions: 1017
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1016
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 138
Effective length of database: 8,953,820
Effective search space: 1235627160
Effective search space used: 1235627160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000498
(703 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 515 e-143
>Sscrofa_Chr15
|| Length = 157681621
Score = 515 bits (260), Expect = e-143
Identities = 260/260 (100%)
Strand = Plus / Plus
Query: 185 gactttgaggatctctttgatgacgacgacgtccagtgagtgtgtctggcgctgcgttgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950026 gactttgaggatctctttgatgacgacgacgtccagtgagtgtgtctggcgctgcgttgg 153950085
Query: 245 gtgaagcctttgtcacgcggcgctgtggtggctttgctcacaggacggttctcaggagcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950086 gtgaagcctttgtcacgcggcgctgtggtggctttgctcacaggacggttctcaggagcc 153950145
Query: 305 aggggacttgcggaaatcacccggcctcgggagatggtcagctgagcaagaggaggggcg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950146 aggggacttgcggaaatcacccggcctcgggagatggtcagctgagcaagaggaggggcg 153950205
Query: 365 tctcagcctctggatgaggcctcttaacccctgagcgggaccagcgtttgtccttagctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950206 tctcagcctctggatgaggcctcttaacccctgagcgggaccagcgtttgtccttagctt 153950265
Query: 425 caattaaaaatgctgtcgtt 444
||||||||||||||||||||
Sbjct: 153950266 caattaaaaatgctgtcgtt 153950285
Score = 204 bits (103), Expect = 5e-50
Identities = 109/111 (98%)
Strand = Plus / Plus
Query: 3 tcggcgggcgggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153946129 tcggcgggccggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 153946188
Query: 63 tggacgagatgtttcccgagggcgcaggtccctacgtggacctggacgagg 113
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 153946189 tggacgagatgtttcccgagggcgccggtccctacgtggacctggacgagg 153946239
Score = 204 bits (103), Expect = 5e-50
Identities = 109/111 (98%)
Strand = Plus / Minus
Query: 3 tcggcgggcgggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154354533 tcggcgggccggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 154354474
Query: 63 tggacgagatgtttcccgagggcgcaggtccctacgtggacctggacgagg 113
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 154354473 tggacgagatgtttcccgagggcgccggtccctacgtggacctggacgagg 154354423
Score = 149 bits (75), Expect = 2e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 111 aggcaggaggcagcaccgggctcctgatggacttggcagccaatgaaaaggcagttcatg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153948662 aggcaggaggcagcaccgggctcctgatggacttggcagccaatgaaaaggcagttcatg 153948721
Query: 171 cagacttttttaatg 185
|||||||||||||||
Sbjct: 153948722 cagacttttttaatg 153948736
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 13,513,226
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 4
Length of query: 703
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 682
Effective length of database: 2,808,413,156
Effective search space: 1915337772392
Effective search space used: 1915337772392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)