Animal-Genome cDNA 20110601C-000498


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000498
         (703 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001181980.1| hypothetical protein LOC617407 [Bos taurus].       86   2e-17

>ref|NP_001181980.1| hypothetical protein LOC617407 [Bos taurus].
          Length = 57

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +2

Query: 50  MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
           MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1   MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,081,817
Number of extensions: 585591
Number of successful extensions: 1486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1486
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 135
Effective length of database: 14,405,662
Effective search space: 1944764370
Effective search space used: 1944764370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000498
         (703 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_539471.2| PREDICTED: similar to CG17059-PA [Canis familia...    83   3e-16

>ref|XP_539471.2| PREDICTED: similar to CG17059-PA [Canis familiaris].
          Length = 57

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 39/41 (95%), Positives = 39/41 (95%)
 Frame = +2

Query: 50  MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
           MKPA DEMFPEG GPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1   MKPAADEMFPEGPGPYVDLDEAGGSTGLLMDLAANEKAVHA 41


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,627,067
Number of extensions: 512732
Number of successful extensions: 1661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1661
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 135
Effective length of database: 15,574,240
Effective search space: 2102522400
Effective search space used: 2102522400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000498
         (703 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001156896.1| hypothetical protein LOC150678 isoform 2 [Ho...    86   2e-17
Alignment   gi|NP_612209.1| hypothetical protein LOC150678 isoform 1 [Homo ...    83   3e-16

>ref|NP_001156896.1| hypothetical protein LOC150678 isoform 2 [Homo sapiens].
          Length = 57

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +2

Query: 50  MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
           MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1   MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41


>ref|NP_612209.1| hypothetical protein LOC150678 isoform 1 [Homo sapiens].
          Length = 252

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 47/63 (74%), Positives = 47/63 (74%), Gaps = 10/63 (15%)
 Frame = +2

Query: 14  EVDRERPGLQEEMKPAVDEMFPEGAGPYVDLDE----------AGGSTGLLMDLAANEKA 163
           EV  ER G   EMKPAVDEMFPEGAGPYVDLDE          AGGSTGLLMDLAANEKA
Sbjct: 12  EVSLERRG--PEMKPAVDEMFPEGAGPYVDLDEVARARRESPSAGGSTGLLMDLAANEKA 69

Query: 164 VHA 172
           VHA
Sbjct: 70  VHA 72


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 21,975,169
Number of extensions: 487798
Number of successful extensions: 1612
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1611
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 135
Effective length of database: 15,033,728
Effective search space: 2029553280
Effective search space used: 2029553280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000498
         (703 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001156897.1| hypothetical protein LOC66915 [Mus musculus].      86   2e-17

>ref|NP_001156897.1| hypothetical protein LOC66915 [Mus musculus].
          Length = 57

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +2

Query: 50  MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
           MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1   MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 18,465,670
Number of extensions: 409220
Number of successful extensions: 1349
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 136
Effective length of database: 12,674,031
Effective search space: 1723668216
Effective search space used: 1723668216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000498
         (703 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359755.1| PREDICTED: myeloma-overexpressed gene 2 prot...    86   1e-17
Alignment   gi|XP_003359754.1| PREDICTED: myeloma-overexpressed gene 2 prot...    86   1e-17

>ref|XP_003359755.1| PREDICTED: myeloma-overexpressed gene 2 protein homolog isoform 2
           [Sus scrofa].
          Length = 114

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +2

Query: 50  MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
           MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1   MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41


>ref|XP_003359754.1| PREDICTED: myeloma-overexpressed gene 2 protein homolog isoform 1
           [Sus scrofa].
          Length = 57

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +2

Query: 50  MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 172
           MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA
Sbjct: 1   MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHA 41


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,150,075
Number of extensions: 517132
Number of successful extensions: 1017
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1016
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 138
Effective length of database: 8,953,820
Effective search space: 1235627160
Effective search space used: 1235627160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000498
         (703 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         515   e-143

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  515 bits (260), Expect = e-143
 Identities = 260/260 (100%)
 Strand = Plus / Plus

                                                                             
Query: 185       gactttgaggatctctttgatgacgacgacgtccagtgagtgtgtctggcgctgcgttgg 244
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950026 gactttgaggatctctttgatgacgacgacgtccagtgagtgtgtctggcgctgcgttgg 153950085

                                                                             
Query: 245       gtgaagcctttgtcacgcggcgctgtggtggctttgctcacaggacggttctcaggagcc 304
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950086 gtgaagcctttgtcacgcggcgctgtggtggctttgctcacaggacggttctcaggagcc 153950145

                                                                             
Query: 305       aggggacttgcggaaatcacccggcctcgggagatggtcagctgagcaagaggaggggcg 364
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950146 aggggacttgcggaaatcacccggcctcgggagatggtcagctgagcaagaggaggggcg 153950205

                                                                             
Query: 365       tctcagcctctggatgaggcctcttaacccctgagcgggaccagcgtttgtccttagctt 424
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153950206 tctcagcctctggatgaggcctcttaacccctgagcgggaccagcgtttgtccttagctt 153950265

                                     
Query: 425       caattaaaaatgctgtcgtt 444
                 ||||||||||||||||||||
Sbjct: 153950266 caattaaaaatgctgtcgtt 153950285



 Score =  204 bits (103), Expect = 5e-50
 Identities = 109/111 (98%)
 Strand = Plus / Plus

                                                                             
Query: 3         tcggcgggcgggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 62
                 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153946129 tcggcgggccggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 153946188

                                                                    
Query: 63        tggacgagatgtttcccgagggcgcaggtccctacgtggacctggacgagg 113
                 ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 153946189 tggacgagatgtttcccgagggcgccggtccctacgtggacctggacgagg 153946239



 Score =  204 bits (103), Expect = 5e-50
 Identities = 109/111 (98%)
 Strand = Plus / Minus

                                                                             
Query: 3         tcggcgggcgggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 62
                 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154354533 tcggcgggccggaagtggatcgggaacgcccggggctgcaggaggagatgaagccggcgg 154354474

                                                                    
Query: 63        tggacgagatgtttcccgagggcgcaggtccctacgtggacctggacgagg 113
                 ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 154354473 tggacgagatgtttcccgagggcgccggtccctacgtggacctggacgagg 154354423



 Score =  149 bits (75), Expect = 2e-33
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                             
Query: 111       aggcaggaggcagcaccgggctcctgatggacttggcagccaatgaaaaggcagttcatg 170
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153948662 aggcaggaggcagcaccgggctcctgatggacttggcagccaatgaaaaggcagttcatg 153948721

                                
Query: 171       cagacttttttaatg 185
                 |||||||||||||||
Sbjct: 153948722 cagacttttttaatg 153948736


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 13,513,226
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 4
Length of query: 703
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 682
Effective length of database: 2,808,413,156
Effective search space: 1915337772392
Effective search space used: 1915337772392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)