Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000502
(677 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001019739.1| 40S ribosomal protein S11 [Bos taurus]. 320 7e-88
Alignment gi|XP_002688312.1| PREDICTED: ribosomal protein S11-like [Bos t... 225 3e-59
Alignment gi|XP_586818.1| PREDICTED: ribosomal protein S11-like [Bos taur... 225 3e-59
>ref|NP_001019739.1| 40S ribosomal protein S11 [Bos taurus].
Length = 158
Score = 320 bits (820), Expect = 7e-88
Identities = 157/158 (99%), Positives = 158/158 (100%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRGRILSGVVTK+KMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKVKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
>ref|XP_002688312.1| PREDICTED: ribosomal protein S11-like [Bos taurus].
Length = 157
Score = 225 bits (573), Expect = 3e-59
Identities = 114/158 (72%), Positives = 129/158 (81%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTE A QKQPTIFQNKKRVLL ETGKEK P+++KNI LGFKTPKEAIEG YIDKKC
Sbjct: 1 MADIQTEHACQKQPTIFQNKKRVLLRETGKEKFPQFHKNISLGFKTPKEAIEGNYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
FTGN SI+G+ILS + +++ DYL YIRKYNRFE+ H+NMSVHLSPCFRD+
Sbjct: 61 RFTGNGSIQGQILSSDQNEDGEGHSLIC-PDYLRYIRKYNRFERGHRNMSVHLSPCFRDI 119
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDI TVG C P SKTV F+V KVTKAA TK++FQKF
Sbjct: 120 QIGDIFTVGTCWPRSKTVPFHVRKVTKAADTKRKFQKF 157
>ref|XP_586818.1| PREDICTED: ribosomal protein S11-like [Bos taurus].
Length = 157
Score = 225 bits (573), Expect = 3e-59
Identities = 114/158 (72%), Positives = 129/158 (81%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTE A QKQPTIFQNKKRVLL ETGKEK P+++KNI LGFKTPKEAIEG YIDKKC
Sbjct: 1 MADIQTEHACQKQPTIFQNKKRVLLRETGKEKFPQFHKNISLGFKTPKEAIEGNYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
FTGN SI+G+ILS + +++ DYL YIRKYNRFE+ H+NMSVHLSPCFRD+
Sbjct: 61 RFTGNGSIQGQILSSDQNEDGEGHSLIC-PDYLRYIRKYNRFERGHRNMSVHLSPCFRDI 119
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDI TVG C P SKTV F+V KVTKAA TK++FQKF
Sbjct: 120 QIGDIFTVGTCWPRSKTVPFHVRKVTKAADTKRKFQKF 157
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,405,416
Number of extensions: 594618
Number of successful extensions: 1746
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1744
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 127
Effective length of database: 14,438,750
Effective search space: 1833721250
Effective search space used: 1833721250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000502
(677 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533619.2| PREDICTED: similar to ribosomal protein S11 [Ca... 322 3e-88
Alignment gi|XP_850119.1| PREDICTED: similar to ribosomal protein S11 [Ca... 152 3e-37
>ref|XP_533619.2| PREDICTED: similar to ribosomal protein S11 [Canis familiaris].
Length = 158
Score = 322 bits (824), Expect = 3e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
>ref|XP_850119.1| PREDICTED: similar to ribosomal protein S11 [Canis familiaris].
Length = 372
Score = 152 bits (384), Expect = 3e-37
Identities = 73/101 (72%), Positives = 86/101 (85%)
Frame = +1
Query: 247 IDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSP 426
IDKKCPF NVSI+G+ILS VV K+K+ RTIVI +DYLHYI+KYN F+K HKNMS+HLSP
Sbjct: 268 IDKKCPFPNNVSIQGQILSCVVIKVKIHRTIVICQDYLHYIQKYNCFKKCHKNMSLHLSP 327
Query: 427 CFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQ 549
CFRDV IG++VTVGEC+PL + V FN+LKVTK GTKKQ Q
Sbjct: 328 CFRDVNIGNVVTVGECQPLREIVCFNMLKVTKTTGTKKQLQ 368
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,998,162
Number of extensions: 542912
Number of successful extensions: 1790
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1790
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 126
Effective length of database: 15,574,240
Effective search space: 1962354240
Effective search space used: 1962354240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000502
(677 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001006.1| 40S ribosomal protein S11 [Homo sapiens]. 322 2e-88
>ref|NP_001006.1| 40S ribosomal protein S11 [Homo sapiens].
Length = 158
Score = 322 bits (824), Expect = 2e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,540,744
Number of extensions: 530112
Number of successful extensions: 1673
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1673
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 126
Effective length of database: 15,033,728
Effective search space: 1894249728
Effective search space used: 1894249728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000502
(677 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038753.1| 40S ribosomal protein S11 [Mus musculus]. 322 2e-88
Alignment gi|XP_001473106.1| PREDICTED: 40S ribosomal protein S11 [Mus mu... 294 4e-80
Alignment gi|XP_003085865.1| PREDICTED: 40S ribosomal protein S11 [Mus mu... 294 4e-80
>ref|NP_038753.1| 40S ribosomal protein S11 [Mus musculus].
Length = 158
Score = 322 bits (824), Expect = 2e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
>ref|XP_001473106.1| PREDICTED: 40S ribosomal protein S11 [Mus musculus].
Length = 158
Score = 294 bits (753), Expect = 4e-80
Identities = 147/158 (93%), Positives = 149/158 (94%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
M DIQTE AYQKQPTIFQNKKRVLLGETGKEKLP YYKNI LGFK PKEAI+GTYIDKKC
Sbjct: 1 MVDIQTEHAYQKQPTIFQNKKRVLLGETGKEKLPPYYKNIALGFKMPKEAIKGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRG ILSGVVTKMKMQRTIVI +DYL YIRKYNRFEK HKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGWILSGVVTKMKMQRTIVICQDYLCYIRKYNRFEKCHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
>ref|XP_003085865.1| PREDICTED: 40S ribosomal protein S11 [Mus musculus].
Length = 158
Score = 294 bits (753), Expect = 4e-80
Identities = 147/158 (93%), Positives = 149/158 (94%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
M DIQTE AYQKQPTIFQNKKRVLLGETGKEKLP YYKNI LGFK PKEAI+GTYIDKKC
Sbjct: 1 MVDIQTEHAYQKQPTIFQNKKRVLLGETGKEKLPPYYKNIALGFKMPKEAIKGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRG ILSGVVTKMKMQRTIVI +DYL YIRKYNRFEK HKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGWILSGVVTKMKMQRTIVICQDYLCYIRKYNRFEKCHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,097,521
Number of extensions: 448412
Number of successful extensions: 1324
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 127
Effective length of database: 12,674,031
Effective search space: 1609601937
Effective search space used: 1609601937
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000502
(677 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356044.1| PREDICTED: 40S ribosomal protein S11-like is... 322 2e-88
Alignment gi|XP_003127354.1| PREDICTED: 40S ribosomal protein S11-like is... 322 2e-88
>ref|XP_003356044.1| PREDICTED: 40S ribosomal protein S11-like isoform 2 [Sus scrofa].
Length = 158
Score = 322 bits (824), Expect = 2e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
>ref|XP_003127354.1| PREDICTED: 40S ribosomal protein S11-like isoform 1 [Sus scrofa].
Length = 158
Score = 322 bits (824), Expect = 2e-88
Identities = 158/158 (100%), Positives = 158/158 (100%)
Frame = +1
Query: 82 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60
Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120
Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,045,417
Number of extensions: 477978
Number of successful extensions: 1088
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,978,717
Effective search space: 1167233210
Effective search space used: 1167233210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000502
(677 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 414 e-113
Sscrofa_Chr06 345 2e-92
Sscrofa_Chr01 123 1e-25
Sscrofa_Chr09 70 2e-09
>Sscrofa_Chr14
|| Length = 153851969
Score = 414 bits (209), Expect = e-113
Identities = 467/546 (85%), Gaps = 9/546 (1%)
Strand = Plus / Minus
Query: 61 ttttttctagcggccgggaagatggcgg-atattcagaccgagcgtgcctaccaaaagca 119
||||||| || ||| |||||||||| || | |||||||| |||| |||||||||||| ||
Sbjct: 35426460 ttttttcaagtggctgggaagatggtgggacattcagactgagcatgcctaccaaaatca 35426401
Query: 120 gccgaccatctttcaaaataagaagagggtcctgcttggcgaaactggcaaggagaagct 179
||||| ||||||| ||||||| ||||||||||||||| | |||||||||||| |||||||
Sbjct: 35426400 gccgagcatctttaaaaataaaaagagggtcctgctttgagaaactggcaagaagaagct 35426341
Query: 180 cccgcgatactacaagaacatcggcctgggcttcaagacaccgaaggaggccatcgaggg 239
||||| ||||||||| |||||| | ||||||||||||||||| ||||||||||| || |
Sbjct: 35426340 cccgcaatactacaaaaacatcagtctgggcttcaagacaccaaaggaggccattga-ga 35426282
Query: 240 cacctacattgacaagaaatgcccttttactggtaacgtctccatccgagggcggatcct 299
|||||||||||| | |||||||||||| |||||||| ||||||||| |||| |||||||
Sbjct: 35426281 cacctacattgataggaaatgccctttccctggtaacatctccatccaagggtggatcct 35426222
Query: 300 gtctggcgtggtgaccaagatgaagatgcagcggaccatcgtcatccgccgagactacct 359
||||| ||||| |||||| ||||||||||| ||||||||| |||||||| |||| | |
Sbjct: 35426221 gtctgacgtggcgaccaaagtgaagatgcagaggaccatcggcatccgccaagacgatgt 35426162
Query: 360 ccactacatccgaaagtacaaccgctttgagaagcgccacaagaacatgtccgtgcacct 419
||||||||||| ||||||||| ||||| ||||| |||| |||||||| || ||| |||
Sbjct: 35426161 ccactacatccagaagtacaactgctttaggaagcaccacgagaacatgaccatgcccct 35426102
Query: 420 ctccccctgcttcagggacgtccagatcggcgacattgtcacagtgggcgagtgtcggcc 479
||||| ||||||||||||||||||| | ||||| ||||||| ||||||||||| | |
Sbjct: 35426101 -tcccc--acttcagggacgtccagatcagtgacatggtcacagcgggcgagtgtcaggc 35426045
Query: 480 cctgagcaagacggtgcgcttcaatgtgctcaaggtcaccaaggctgctggcaccaagaa 539
|||||||||||| |||| |||| ||| | ||||| | ||||||||||||||||||| |
Sbjct: 35426044 cctgagcaagactgtgcacttccatgagttcaagct---caaggctgctggcaccaagga 35425988
Query: 540 gcagttccagaagttctgagactgcacccc-atccactgccctgaacaaaataaagctat 598
||||||||||||||||| |||||| ||||| |||||||||| |||||| |||| |||
Sbjct: 35425987 gcagttccagaagttctaagactggacccctgcccactgccctaaacaaattaaaattat 35425928
Query: 599 tttccc 604
||||||
Sbjct: 35425927 tttccc 35425922
>Sscrofa_Chr06
|| Length = 157765593
Score = 345 bits (174), Expect = 2e-92
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 431 tcagggacgtccagatcggcgacattgtcacagtgggcgagtgtcggcccctgagcaaga 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308584 tcagggacgtccagatcggcgacattgtcacagtgggcgagtgtcggcccctgagcaaga 50308643
Query: 491 cggtgcgcttcaatgtgctcaaggtcaccaaggctgctggcaccaagaagcagttccaga 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308644 cggtgcgcttcaatgtgctcaaggtcaccaaggctgctggcaccaagaagcagttccaga 50308703
Query: 551 agttctgagactgcaccccatccactgccctgaacaaaataaagctattttccc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308704 agttctgagactgcaccccatccactgccctgaacaaaataaagctattttccc 50308757
Score = 268 bits (135), Expect = 4e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 95 agaccgagcgtgcctaccaaaagcagccgaccatctttcaaaataagaagagggtcctgc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50307371 agaccgagcgtgcctaccaaaagcagccgaccatctttcaaaataagaagagggtcctgc 50307430
Query: 155 ttggcgaaactggcaaggagaagctcccgcgatactacaagaacatcggcctgggcttca 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50307431 ttggcgaaactggcaaggagaagctcccgcgatactacaagaacatcggcctgggcttca 50307490
Query: 215 agacaccgaaggagg 229
|||||||||||||||
Sbjct: 50307491 agacaccgaaggagg 50307505
Score = 254 bits (128), Expect = 5e-65
Identities = 131/132 (99%)
Strand = Plus / Plus
Query: 304 ggcgtggtgaccaagatgaagatgcagcggaccatcgtcatccgccgagactacctccac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308026 ggcgtggtgaccaagatgaagatgcagcggaccatcgtcatccgccgagactacctccac 50308085
Query: 364 tacatccgaaagtacaaccgctttgagaagcgccacaagaacatgtccgtgcacctctcc 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 50308086 tacatccgaaagtacaaccgctttgagaagcgccacaagaatatgtccgtgcacctctcc 50308145
Query: 424 ccctgcttcagg 435
||||||||||||
Sbjct: 50308146 ccctgcttcagg 50308157
Score = 180 bits (91), Expect = 7e-43
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 2 acttcctctctggcccctgtgcagtcgataaggaaacccggacgacaccgcggcttgcct 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 50306576 acttcctctctggcccctgtgcagtcgataaggaaacccggacgacaccgcggctttcct 50306635
Query: 62 tttttctagcggccgggaagatggcggatattcag 96
|||||||||||||||||||||||||||||||||||
Sbjct: 50306636 tttttctagcggccgggaagatggcggatattcag 50306670
Score = 157 bits (79), Expect = 9e-36
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 227 aggccatcgagggcacctacattgacaagaaatgcccttttactggtaacgtctccatcc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50307699 aggccatcgagggcacctacattgacaagaaatgcccttttactggtaacgtctccatcc 50307758
Query: 287 gagggcggatcctgtctgg 305
|||||||||||||||||||
Sbjct: 50307759 gagggcggatcctgtctgg 50307777
Score = 107 bits (54), Expect = 8e-21
Identities = 141/166 (84%), Gaps = 3/166 (1%)
Strand = Plus / Minus
Query: 205 ctgggcttcaagacaccgaaggagg-ccatcgagggcacctacattgacaagaaatgccc 263
|||||||||||| |||| | ||||| |||| |||| | |||||| |||||||||||||||
Sbjct: 125624534 ctgggcttcaaggcacc-agggaggaccattgaggacgcctacactgacaagaaatgccc 125624476
Query: 264 ttttactggtaacgtctccatccgagggcggatcctgtctggcgtggtgaccaagatgaa 323
|| |||||||| |||| || | |||||| |||||||||||| ||||||||||||||||
Sbjct: 125624475 ctt-actggtaatgtctgcagctgagggcagatcctgtctggtatggtgaccaagatgaa 125624417
Query: 324 gatgcagcggaccatcgtcatccgccgagactacctccactacatc 369
||||||| |||| | || ||| ||||||| ||||||||||||||
Sbjct: 125624416 gatgcagaagacctttgttatcttccgagaccacctccactacatc 125624371
Score = 63.9 bits (32), Expect = 1e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 477 gcccctgagcaagacggtgcgcttcaatgtgctcaaggtcacca 520
|||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 62190374 gcccctgagccagaccgtgagcttcaatgtgctcaaggtcacca 62190417
>Sscrofa_Chr01
|| Length = 315321322
Score = 123 bits (62), Expect = 1e-25
Identities = 175/210 (83%), Gaps = 2/210 (0%)
Strand = Plus / Minus
Query: 76 gggaagatggcggatattcagaccgagcgtgcctaccaaaagcagccgacc-atctttca 134
||||| ||||||| |||||||| |||| | |||||| |||||||| ||| ||||||||
Sbjct: 75518713 gggaaaatggcggtcattcagactgagcatacctaccgaaagcagctgacttatctttca 75518654
Query: 135 aaataagaagagggtcctgcttggcgaaactggcaaggagaagctcccgcgatactacaa 194
||||||||||||| |||| | ||| ||||||||||| ||||| |||| | ||||||||||
Sbjct: 75518653 aaataagaagaggatcctacgtggagaaactggcaaagagaaactcctgtgatactacaa 75518594
Query: 195 gaacatcggcctgggcttcaagacaccgaaggaggccatcgagggcacctacattgacaa 254
||||| || |||||||||| ||| || |||||| || |||||||||||||| |
Sbjct: 75518593 atacatcattctaggcttcaagataccagagaaggccactgaaggcacctacattgatga 75518534
Query: 255 gaaatgcccttttactggtaacgtctccat 284
||||||||| ||||||||||| ||||||||
Sbjct: 75518533 gaaatgccc-tttactggtaatgtctccat 75518505
Score = 85.7 bits (43), Expect = 3e-14
Identities = 163/201 (81%), Gaps = 4/201 (1%)
Strand = Plus / Minus
Query: 340 gtcatccgccgagactacctccactacatccgaaagtacaaccgctttgagaagcgccac 399
|||||| ||| |||||||||||||||||||| ||||||| || ||| ||||| |||||
Sbjct: 75518469 gtcatctgccaagactacctccactacatccaaaagtaccac---tttaagaagtgccac 75518413
Query: 400 aagaacatgtccgtgcacctctccccctgcttcagggacgtccagatcggcgacattgtc 459
| ||||||||| ||| |||| ||||||||||||| ||| ||||| || ||||| |||
Sbjct: 75518412 aggaacatgtctgtgtacctttccccctgcttca-ggatatccaggtccatgacatggtc 75518354
Query: 460 acagtgggcgagtgtcggcccctgagcaagacggtgcgcttcaatgtgctcaaggtcacc 519
|||||||| ||| ||||||||| || ||| || |||||| ||||||||| ||||
Sbjct: 75518353 acagtgggtgaggactggcccctgaacaggacaatgtacttcaacatgctcaaggccacc 75518294
Query: 520 aaggctgctggcaccaagaag 540
|||||||| ||||||||||
Sbjct: 75518293 aaggctgccaacaccaagaag 75518273
>Sscrofa_Chr09
|| Length = 153670197
Score = 69.9 bits (35), Expect = 2e-09
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 505 gtgctcaaggtcaccaaggctgctggcaccaagaagcagttccagaagttctgag 559
||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct: 73801696 gtgctcaagttcaccaaggctgctggtaccaagaagcgattccagaagctctgag 73801642
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,028,671
Number of extensions: 312
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 12
Length of query: 677
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 656
Effective length of database: 2,808,413,156
Effective search space: 1842319030336
Effective search space used: 1842319030336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)