Animal-Genome cDNA 20110601C-000502


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000502
         (677 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001019739.1| 40S ribosomal protein S11 [Bos taurus].           320   7e-88
Alignment   gi|XP_002688312.1| PREDICTED: ribosomal protein S11-like [Bos t...   225   3e-59
Alignment   gi|XP_586818.1| PREDICTED: ribosomal protein S11-like [Bos taur...   225   3e-59

>ref|NP_001019739.1| 40S ribosomal protein S11 [Bos taurus].
          Length = 158

 Score =  320 bits (820), Expect = 7e-88
 Identities = 157/158 (99%), Positives = 158/158 (100%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRGRILSGVVTK+KMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKVKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


>ref|XP_002688312.1| PREDICTED: ribosomal protein S11-like [Bos taurus].
          Length = 157

 Score =  225 bits (573), Expect = 3e-59
 Identities = 114/158 (72%), Positives = 129/158 (81%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTE A QKQPTIFQNKKRVLL ETGKEK P+++KNI LGFKTPKEAIEG YIDKKC
Sbjct: 1   MADIQTEHACQKQPTIFQNKKRVLLRETGKEKFPQFHKNISLGFKTPKEAIEGNYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
            FTGN SI+G+ILS    +     +++   DYL YIRKYNRFE+ H+NMSVHLSPCFRD+
Sbjct: 61  RFTGNGSIQGQILSSDQNEDGEGHSLIC-PDYLRYIRKYNRFERGHRNMSVHLSPCFRDI 119

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDI TVG C P SKTV F+V KVTKAA TK++FQKF
Sbjct: 120 QIGDIFTVGTCWPRSKTVPFHVRKVTKAADTKRKFQKF 157


>ref|XP_586818.1| PREDICTED: ribosomal protein S11-like [Bos taurus].
          Length = 157

 Score =  225 bits (573), Expect = 3e-59
 Identities = 114/158 (72%), Positives = 129/158 (81%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTE A QKQPTIFQNKKRVLL ETGKEK P+++KNI LGFKTPKEAIEG YIDKKC
Sbjct: 1   MADIQTEHACQKQPTIFQNKKRVLLRETGKEKFPQFHKNISLGFKTPKEAIEGNYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
            FTGN SI+G+ILS    +     +++   DYL YIRKYNRFE+ H+NMSVHLSPCFRD+
Sbjct: 61  RFTGNGSIQGQILSSDQNEDGEGHSLIC-PDYLRYIRKYNRFERGHRNMSVHLSPCFRDI 119

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDI TVG C P SKTV F+V KVTKAA TK++FQKF
Sbjct: 120 QIGDIFTVGTCWPRSKTVPFHVRKVTKAADTKRKFQKF 157


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,405,416
Number of extensions: 594618
Number of successful extensions: 1746
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1744
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 127
Effective length of database: 14,438,750
Effective search space: 1833721250
Effective search space used: 1833721250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000502
         (677 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533619.2| PREDICTED: similar to ribosomal protein S11 [Ca...   322   3e-88
Alignment   gi|XP_850119.1| PREDICTED: similar to ribosomal protein S11 [Ca...   152   3e-37

>ref|XP_533619.2| PREDICTED: similar to ribosomal protein S11 [Canis familiaris].
          Length = 158

 Score =  322 bits (824), Expect = 3e-88
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


>ref|XP_850119.1| PREDICTED: similar to ribosomal protein S11 [Canis familiaris].
          Length = 372

 Score =  152 bits (384), Expect = 3e-37
 Identities = 73/101 (72%), Positives = 86/101 (85%)
 Frame = +1

Query: 247 IDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSP 426
           IDKKCPF  NVSI+G+ILS VV K+K+ RTIVI +DYLHYI+KYN F+K HKNMS+HLSP
Sbjct: 268 IDKKCPFPNNVSIQGQILSCVVIKVKIHRTIVICQDYLHYIQKYNCFKKCHKNMSLHLSP 327

Query: 427 CFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQ 549
           CFRDV IG++VTVGEC+PL + V FN+LKVTK  GTKKQ Q
Sbjct: 328 CFRDVNIGNVVTVGECQPLREIVCFNMLKVTKTTGTKKQLQ 368


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,998,162
Number of extensions: 542912
Number of successful extensions: 1790
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1790
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 126
Effective length of database: 15,574,240
Effective search space: 1962354240
Effective search space used: 1962354240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000502
         (677 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001006.1| 40S ribosomal protein S11 [Homo sapiens].            322   2e-88

>ref|NP_001006.1| 40S ribosomal protein S11 [Homo sapiens].
          Length = 158

 Score =  322 bits (824), Expect = 2e-88
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,540,744
Number of extensions: 530112
Number of successful extensions: 1673
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1673
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 126
Effective length of database: 15,033,728
Effective search space: 1894249728
Effective search space used: 1894249728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000502
         (677 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_038753.1| 40S ribosomal protein S11 [Mus musculus].            322   2e-88
Alignment   gi|XP_001473106.1| PREDICTED: 40S ribosomal protein S11 [Mus mu...   294   4e-80
Alignment   gi|XP_003085865.1| PREDICTED: 40S ribosomal protein S11 [Mus mu...   294   4e-80

>ref|NP_038753.1| 40S ribosomal protein S11 [Mus musculus].
          Length = 158

 Score =  322 bits (824), Expect = 2e-88
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


>ref|XP_001473106.1| PREDICTED: 40S ribosomal protein S11 [Mus musculus].
          Length = 158

 Score =  294 bits (753), Expect = 4e-80
 Identities = 147/158 (93%), Positives = 149/158 (94%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           M DIQTE AYQKQPTIFQNKKRVLLGETGKEKLP YYKNI LGFK PKEAI+GTYIDKKC
Sbjct: 1   MVDIQTEHAYQKQPTIFQNKKRVLLGETGKEKLPPYYKNIALGFKMPKEAIKGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRG ILSGVVTKMKMQRTIVI +DYL YIRKYNRFEK HKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGWILSGVVTKMKMQRTIVICQDYLCYIRKYNRFEKCHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


>ref|XP_003085865.1| PREDICTED: 40S ribosomal protein S11 [Mus musculus].
          Length = 158

 Score =  294 bits (753), Expect = 4e-80
 Identities = 147/158 (93%), Positives = 149/158 (94%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           M DIQTE AYQKQPTIFQNKKRVLLGETGKEKLP YYKNI LGFK PKEAI+GTYIDKKC
Sbjct: 1   MVDIQTEHAYQKQPTIFQNKKRVLLGETGKEKLPPYYKNIALGFKMPKEAIKGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRG ILSGVVTKMKMQRTIVI +DYL YIRKYNRFEK HKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGWILSGVVTKMKMQRTIVICQDYLCYIRKYNRFEKCHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,097,521
Number of extensions: 448412
Number of successful extensions: 1324
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 3
Length of query: 225
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 127
Effective length of database: 12,674,031
Effective search space: 1609601937
Effective search space used: 1609601937
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000502
         (677 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356044.1| PREDICTED: 40S ribosomal protein S11-like is...   322   2e-88
Alignment   gi|XP_003127354.1| PREDICTED: 40S ribosomal protein S11-like is...   322   2e-88

>ref|XP_003356044.1| PREDICTED: 40S ribosomal protein S11-like isoform 2 [Sus scrofa].
          Length = 158

 Score =  322 bits (824), Expect = 2e-88
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


>ref|XP_003127354.1| PREDICTED: 40S ribosomal protein S11-like isoform 1 [Sus scrofa].
          Length = 158

 Score =  322 bits (824), Expect = 2e-88
 Identities = 158/158 (100%), Positives = 158/158 (100%)
 Frame = +1

Query: 82  MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 261
           MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 262 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 441
           PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 442 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 555
           QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
Sbjct: 121 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,045,417
Number of extensions: 477978
Number of successful extensions: 1088
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,978,717
Effective search space: 1167233210
Effective search space used: 1167233210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000502
         (677 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         414   e-113
Sscrofa_Chr06                                                         345   2e-92
Sscrofa_Chr01                                                         123   1e-25
Sscrofa_Chr09                                                          70   2e-09

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  414 bits (209), Expect = e-113
 Identities = 467/546 (85%), Gaps = 9/546 (1%)
 Strand = Plus / Minus

                                                                            
Query: 61       ttttttctagcggccgggaagatggcgg-atattcagaccgagcgtgcctaccaaaagca 119
                ||||||| || ||| |||||||||| || | |||||||| |||| |||||||||||| ||
Sbjct: 35426460 ttttttcaagtggctgggaagatggtgggacattcagactgagcatgcctaccaaaatca 35426401

                                                                            
Query: 120      gccgaccatctttcaaaataagaagagggtcctgcttggcgaaactggcaaggagaagct 179
                ||||| ||||||| ||||||| ||||||||||||||| | |||||||||||| |||||||
Sbjct: 35426400 gccgagcatctttaaaaataaaaagagggtcctgctttgagaaactggcaagaagaagct 35426341

                                                                            
Query: 180      cccgcgatactacaagaacatcggcctgggcttcaagacaccgaaggaggccatcgaggg 239
                ||||| ||||||||| |||||| | ||||||||||||||||| ||||||||||| || | 
Sbjct: 35426340 cccgcaatactacaaaaacatcagtctgggcttcaagacaccaaaggaggccattga-ga 35426282

                                                                            
Query: 240      cacctacattgacaagaaatgcccttttactggtaacgtctccatccgagggcggatcct 299
                |||||||||||| | ||||||||||||  |||||||| ||||||||| |||| |||||||
Sbjct: 35426281 cacctacattgataggaaatgccctttccctggtaacatctccatccaagggtggatcct 35426222

                                                                            
Query: 300      gtctggcgtggtgaccaagatgaagatgcagcggaccatcgtcatccgccgagactacct 359
                ||||| ||||| ||||||  ||||||||||| ||||||||| |||||||| |||| |  |
Sbjct: 35426221 gtctgacgtggcgaccaaagtgaagatgcagaggaccatcggcatccgccaagacgatgt 35426162

                                                                            
Query: 360      ccactacatccgaaagtacaaccgctttgagaagcgccacaagaacatgtccgtgcacct 419
                |||||||||||  ||||||||| |||||  ||||| |||| |||||||| || ||| |||
Sbjct: 35426161 ccactacatccagaagtacaactgctttaggaagcaccacgagaacatgaccatgcccct 35426102

                                                                            
Query: 420      ctccccctgcttcagggacgtccagatcggcgacattgtcacagtgggcgagtgtcggcc 479
                 |||||   ||||||||||||||||||| | ||||| ||||||| ||||||||||| | |
Sbjct: 35426101 -tcccc--acttcagggacgtccagatcagtgacatggtcacagcgggcgagtgtcaggc 35426045

                                                                            
Query: 480      cctgagcaagacggtgcgcttcaatgtgctcaaggtcaccaaggctgctggcaccaagaa 539
                |||||||||||| |||| |||| ||| | ||||| |   ||||||||||||||||||| |
Sbjct: 35426044 cctgagcaagactgtgcacttccatgagttcaagct---caaggctgctggcaccaagga 35425988

                                                                            
Query: 540      gcagttccagaagttctgagactgcacccc-atccactgccctgaacaaaataaagctat 598
                ||||||||||||||||| |||||| |||||   |||||||||| |||||| ||||  |||
Sbjct: 35425987 gcagttccagaagttctaagactggacccctgcccactgccctaaacaaattaaaattat 35425928

                      
Query: 599      tttccc 604
                ||||||
Sbjct: 35425927 tttccc 35425922


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  345 bits (174), Expect = 2e-92
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                            
Query: 431      tcagggacgtccagatcggcgacattgtcacagtgggcgagtgtcggcccctgagcaaga 490
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308584 tcagggacgtccagatcggcgacattgtcacagtgggcgagtgtcggcccctgagcaaga 50308643

                                                                            
Query: 491      cggtgcgcttcaatgtgctcaaggtcaccaaggctgctggcaccaagaagcagttccaga 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308644 cggtgcgcttcaatgtgctcaaggtcaccaaggctgctggcaccaagaagcagttccaga 50308703

                                                                      
Query: 551      agttctgagactgcaccccatccactgccctgaacaaaataaagctattttccc 604
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308704 agttctgagactgcaccccatccactgccctgaacaaaataaagctattttccc 50308757



 Score =  268 bits (135), Expect = 4e-69
 Identities = 135/135 (100%)
 Strand = Plus / Plus

                                                                            
Query: 95       agaccgagcgtgcctaccaaaagcagccgaccatctttcaaaataagaagagggtcctgc 154
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50307371 agaccgagcgtgcctaccaaaagcagccgaccatctttcaaaataagaagagggtcctgc 50307430

                                                                            
Query: 155      ttggcgaaactggcaaggagaagctcccgcgatactacaagaacatcggcctgggcttca 214
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50307431 ttggcgaaactggcaaggagaagctcccgcgatactacaagaacatcggcctgggcttca 50307490

                               
Query: 215      agacaccgaaggagg 229
                |||||||||||||||
Sbjct: 50307491 agacaccgaaggagg 50307505



 Score =  254 bits (128), Expect = 5e-65
 Identities = 131/132 (99%)
 Strand = Plus / Plus

                                                                            
Query: 304      ggcgtggtgaccaagatgaagatgcagcggaccatcgtcatccgccgagactacctccac 363
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50308026 ggcgtggtgaccaagatgaagatgcagcggaccatcgtcatccgccgagactacctccac 50308085

                                                                            
Query: 364      tacatccgaaagtacaaccgctttgagaagcgccacaagaacatgtccgtgcacctctcc 423
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 50308086 tacatccgaaagtacaaccgctttgagaagcgccacaagaatatgtccgtgcacctctcc 50308145

                            
Query: 424      ccctgcttcagg 435
                ||||||||||||
Sbjct: 50308146 ccctgcttcagg 50308157



 Score =  180 bits (91), Expect = 7e-43
 Identities = 94/95 (98%)
 Strand = Plus / Plus

                                                                            
Query: 2        acttcctctctggcccctgtgcagtcgataaggaaacccggacgacaccgcggcttgcct 61
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 50306576 acttcctctctggcccctgtgcagtcgataaggaaacccggacgacaccgcggctttcct 50306635

                                                   
Query: 62       tttttctagcggccgggaagatggcggatattcag 96
                |||||||||||||||||||||||||||||||||||
Sbjct: 50306636 tttttctagcggccgggaagatggcggatattcag 50306670



 Score =  157 bits (79), Expect = 9e-36
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                            
Query: 227      aggccatcgagggcacctacattgacaagaaatgcccttttactggtaacgtctccatcc 286
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50307699 aggccatcgagggcacctacattgacaagaaatgcccttttactggtaacgtctccatcc 50307758

                                   
Query: 287      gagggcggatcctgtctgg 305
                |||||||||||||||||||
Sbjct: 50307759 gagggcggatcctgtctgg 50307777



 Score =  107 bits (54), Expect = 8e-21
 Identities = 141/166 (84%), Gaps = 3/166 (1%)
 Strand = Plus / Minus

                                                                             
Query: 205       ctgggcttcaagacaccgaaggagg-ccatcgagggcacctacattgacaagaaatgccc 263
                 |||||||||||| |||| | ||||| |||| |||| | |||||| |||||||||||||||
Sbjct: 125624534 ctgggcttcaaggcacc-agggaggaccattgaggacgcctacactgacaagaaatgccc 125624476

                                                                             
Query: 264       ttttactggtaacgtctccatccgagggcggatcctgtctggcgtggtgaccaagatgaa 323
                  || |||||||| |||| || | |||||| ||||||||||||  ||||||||||||||||
Sbjct: 125624475 ctt-actggtaatgtctgcagctgagggcagatcctgtctggtatggtgaccaagatgaa 125624417

                                                               
Query: 324       gatgcagcggaccatcgtcatccgccgagactacctccactacatc 369
                 |||||||  |||| | || |||  ||||||| ||||||||||||||
Sbjct: 125624416 gatgcagaagacctttgttatcttccgagaccacctccactacatc 125624371



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 477      gcccctgagcaagacggtgcgcttcaatgtgctcaaggtcacca 520
                |||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 62190374 gcccctgagccagaccgtgagcttcaatgtgctcaaggtcacca 62190417


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  123 bits (62), Expect = 1e-25
 Identities = 175/210 (83%), Gaps = 2/210 (0%)
 Strand = Plus / Minus

                                                                            
Query: 76       gggaagatggcggatattcagaccgagcgtgcctaccaaaagcagccgacc-atctttca 134
                ||||| |||||||  |||||||| |||| | |||||| |||||||| |||  ||||||||
Sbjct: 75518713 gggaaaatggcggtcattcagactgagcatacctaccgaaagcagctgacttatctttca 75518654

                                                                            
Query: 135      aaataagaagagggtcctgcttggcgaaactggcaaggagaagctcccgcgatactacaa 194
                ||||||||||||| |||| | ||| ||||||||||| ||||| |||| | ||||||||||
Sbjct: 75518653 aaataagaagaggatcctacgtggagaaactggcaaagagaaactcctgtgatactacaa 75518594

                                                                            
Query: 195      gaacatcggcctgggcttcaagacaccgaaggaggccatcgagggcacctacattgacaa 254
                  |||||   || |||||||||| |||  || ||||||  || ||||||||||||||  |
Sbjct: 75518593 atacatcattctaggcttcaagataccagagaaggccactgaaggcacctacattgatga 75518534

                                              
Query: 255      gaaatgcccttttactggtaacgtctccat 284
                ||||||||| ||||||||||| ||||||||
Sbjct: 75518533 gaaatgccc-tttactggtaatgtctccat 75518505



 Score = 85.7 bits (43), Expect = 3e-14
 Identities = 163/201 (81%), Gaps = 4/201 (1%)
 Strand = Plus / Minus

                                                                            
Query: 340      gtcatccgccgagactacctccactacatccgaaagtacaaccgctttgagaagcgccac 399
                |||||| ||| |||||||||||||||||||| ||||||| ||   ||| ||||| |||||
Sbjct: 75518469 gtcatctgccaagactacctccactacatccaaaagtaccac---tttaagaagtgccac 75518413

                                                                            
Query: 400      aagaacatgtccgtgcacctctccccctgcttcagggacgtccagatcggcgacattgtc 459
                | ||||||||| ||| |||| ||||||||||||| |||  ||||| ||   ||||| |||
Sbjct: 75518412 aggaacatgtctgtgtacctttccccctgcttca-ggatatccaggtccatgacatggtc 75518354

                                                                            
Query: 460      acagtgggcgagtgtcggcccctgagcaagacggtgcgcttcaatgtgctcaaggtcacc 519
                |||||||| |||    ||||||||| || |||  ||  ||||||  ||||||||| ||||
Sbjct: 75518353 acagtgggtgaggactggcccctgaacaggacaatgtacttcaacatgctcaaggccacc 75518294

                                     
Query: 520      aaggctgctggcaccaagaag 540
                ||||||||   ||||||||||
Sbjct: 75518293 aaggctgccaacaccaagaag 75518273


>Sscrofa_Chr09 
||          Length = 153670197

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 505      gtgctcaaggtcaccaaggctgctggcaccaagaagcagttccagaagttctgag 559
                ||||||||| |||||||||||||||| ||||||||||  ||||||||| ||||||
Sbjct: 73801696 gtgctcaagttcaccaaggctgctggtaccaagaagcgattccagaagctctgag 73801642


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,028,671
Number of extensions: 312
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 12
Length of query: 677
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 656
Effective length of database: 2,808,413,156
Effective search space: 1842319030336
Effective search space used: 1842319030336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)