Animal-Genome cDNA 20110601C-000508


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000508
         (650 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777229.1| 40S ribosomal protein S29 [Bos taurus].              127   8e-30
Alignment   gi|XP_002700645.1| PREDICTED: ribosomal protein S29-like [Bos t...   127   8e-30
Alignment   gi|XP_002690793.1| PREDICTED: ribosomal protein S29-like [Bos t...   124   7e-29
Alignment   gi|XP_001251704.1| PREDICTED: ribosomal protein S29-like [Bos t...   124   7e-29
Alignment   gi|XP_002695388.1| PREDICTED: ribosomal protein S29-like [Bos t...   115   3e-26
Alignment   gi|XP_002702042.1| PREDICTED: ribosomal protein S29-like [Bos t...   115   3e-26
Alignment   gi|XP_002694854.1| PREDICTED: ribosomal protein S29-like [Bos t...    97   1e-20
Alignment   gi|XP_002701857.1| PREDICTED: ribosomal protein S29-like [Bos t...    97   1e-20

>ref|NP_777229.1| 40S ribosomal protein S29 [Bos taurus].
          Length = 56

 Score =  127 bits (319), Expect = 8e-30
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_002700645.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
          Length = 56

 Score =  127 bits (319), Expect = 8e-30
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_002690793.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
          Length = 56

 Score =  124 bits (311), Expect = 7e-29
 Identities = 55/56 (98%), Positives = 55/56 (98%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRH LIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHRLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_001251704.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
          Length = 56

 Score =  124 bits (311), Expect = 7e-29
 Identities = 55/56 (98%), Positives = 55/56 (98%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRH LIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHRLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_002695388.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
          Length = 56

 Score =  115 bits (288), Expect = 3e-26
 Identities = 52/56 (92%), Positives = 52/56 (92%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKF QGSRS RVCSNRHGLIRK GLNMCRQCFRQY KDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFRQGSRSSRVCSNRHGLIRKCGLNMCRQCFRQYTKDIGFIKLD 56


>ref|XP_002702042.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
          Length = 56

 Score =  115 bits (288), Expect = 3e-26
 Identities = 52/56 (92%), Positives = 52/56 (92%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKF QGSRS RVCSNRHGLIRK GLNMCRQCFRQY KDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFRQGSRSSRVCSNRHGLIRKCGLNMCRQCFRQYTKDIGFIKLD 56


>ref|XP_002694854.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
          Length = 56

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYW H RKFGQ SRSC VCSN HGLI+KYGL MC Q F QYAKDI  +KLD
Sbjct: 1   MGHQQLYWIHQRKFGQSSRSCWVCSNHHGLIQKYGLKMCHQRFHQYAKDISVVKLD 56


>ref|XP_002701857.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
          Length = 56

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 43/56 (76%), Positives = 45/56 (80%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYW H RKFGQ SRSC VCSN HGLI+KYGL MC Q F QYAKDI  +KLD
Sbjct: 1   MGHQQLYWIHQRKFGQSSRSCWVCSNHHGLIQKYGLKMCHQRFHQYAKDISVVKLD 56


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 17,548,291
Number of extensions: 460492
Number of successful extensions: 1288
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 8
Length of query: 216
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 118
Effective length of database: 14,438,750
Effective search space: 1703772500
Effective search space used: 1703772500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000508
         (650 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853223.1| PREDICTED: similar to 40S ribosomal protein S29...   127   8e-30

>ref|XP_853223.1| PREDICTED: similar to 40S ribosomal protein S29 [Canis familiaris].
          Length = 56

 Score =  127 bits (319), Expect = 8e-30
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 17,708,384
Number of extensions: 360305
Number of successful extensions: 1375
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1359
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 117
Effective length of database: 15,574,240
Effective search space: 1822186080
Effective search space used: 1822186080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000508
         (650 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001023.1| 40S ribosomal protein S29 isoform 1 [Homo sapie...   127   8e-30
Alignment   gi|NP_001025172.1| 40S ribosomal protein S29 isoform 2 [Homo sa...   125   4e-29

>ref|NP_001023.1| 40S ribosomal protein S29 isoform 1 [Homo sapiens].
          Length = 56

 Score =  127 bits (319), Expect = 8e-30
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|NP_001025172.1| 40S ribosomal protein S29 isoform 2 [Homo sapiens].
          Length = 67

 Score =  125 bits (313), Expect = 4e-29
 Identities = 55/56 (98%), Positives = 55/56 (98%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK D
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKKD 56


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 17,253,341
Number of extensions: 346092
Number of successful extensions: 1227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 118
Effective length of database: 15,066,692
Effective search space: 1777869656
Effective search space used: 1777869656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000508
         (650 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_900017.1| PREDICTED: 40S ribosomal protein S29-like [Mus ...   127   7e-30
Alignment   gi|XP_003086321.1| PREDICTED: 40S ribosomal protein S29-like [M...   127   7e-30
Alignment   gi|NP_033119.1| 40S ribosomal protein S29 [Mus musculus].            127   7e-30
Alignment   gi|XP_003084981.1| PREDICTED: 40S ribosomal protein S29-like [M...   125   3e-29
Alignment   gi|XP_001474465.1| PREDICTED: 40S ribosomal protein S29-like [M...   125   3e-29
Alignment   gi|XP_003084665.1| PREDICTED: 40S ribosomal protein S29-like [M...   124   6e-29
Alignment   gi|XP_003086486.1| PREDICTED: 40S ribosomal protein S29-like [M...   124   6e-29
Alignment   gi|XP_003084692.1| PREDICTED: 40S ribosomal protein S29-like [M...   115   2e-26
Alignment   gi|XP_003086573.1| PREDICTED: 40S ribosomal protein S29-like [M...   115   2e-26
Alignment   gi|XP_003085102.1| PREDICTED: 40S ribosomal protein S29-like [M...   115   4e-26

>ref|XP_900017.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  127 bits (319), Expect = 7e-30
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_003086321.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  127 bits (319), Expect = 7e-30
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|NP_033119.1| 40S ribosomal protein S29 [Mus musculus].
          Length = 56

 Score =  127 bits (319), Expect = 7e-30
 Identities = 56/56 (100%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_003084981.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  125 bits (314), Expect = 3e-29
 Identities = 54/56 (96%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCR+CSNRHGLIRKYGLN+CRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRICSNRHGLIRKYGLNVCRQCFRQYAKDIGFIKLD 56


>ref|XP_001474465.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  125 bits (314), Expect = 3e-29
 Identities = 54/56 (96%), Positives = 56/56 (100%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCR+CSNRHGLIRKYGLN+CRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRICSNRHGLIRKYGLNVCRQCFRQYAKDIGFIKLD 56


>ref|XP_003084665.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  124 bits (311), Expect = 6e-29
 Identities = 55/56 (98%), Positives = 55/56 (98%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_003086486.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  124 bits (311), Expect = 6e-29
 Identities = 55/56 (98%), Positives = 55/56 (98%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_003084692.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  115 bits (289), Expect = 2e-26
 Identities = 51/56 (91%), Positives = 52/56 (92%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MG QQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LN+CRQCFRQY KD GFIKLD
Sbjct: 1   MGDQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNVCRQCFRQYTKDTGFIKLD 56


>ref|XP_003086573.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  115 bits (289), Expect = 2e-26
 Identities = 51/56 (91%), Positives = 52/56 (92%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MG QQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LN+CRQCFRQY KD GFIKLD
Sbjct: 1   MGDQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNVCRQCFRQYTKDTGFIKLD 56


>ref|XP_003085102.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
          Length = 56

 Score =  115 bits (287), Expect = 4e-26
 Identities = 51/56 (91%), Positives = 52/56 (92%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYW+HPRKFGQGSRSC VCSNRHGLI KYGLNM RQCFRQY KDIGFIKLD
Sbjct: 1   MGHQQLYWNHPRKFGQGSRSCCVCSNRHGLILKYGLNMSRQCFRQYVKDIGFIKLD 56


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 14,670,741
Number of extensions: 295605
Number of successful extensions: 1021
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 15
Length of query: 216
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 119
Effective length of database: 12,704,067
Effective search space: 1511783973
Effective search space used: 1511783973
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000508
         (650 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001633.1| 40S ribosomal protein S29 [Sus scrofa].           119   1e-27
Alignment   gi|XP_003356309.1| PREDICTED: 40S ribosomal protein S29-like [S...   115   3e-26
Alignment   gi|XP_003361457.1| PREDICTED: 40S ribosomal protein S29-like [S...   106   1e-23
Alignment   gi|XP_003121633.1| PREDICTED: 40S ribosomal protein S29-like [S...   106   1e-23
Alignment   gi|XP_003353438.1| PREDICTED: 40S ribosomal protein S29-like [S...   106   1e-23
Alignment   gi|XP_003123598.1| PREDICTED: 40S ribosomal protein S29-like [S...   105   3e-23
Alignment   gi|XP_003133998.1| PREDICTED: 40S ribosomal protein S29-like [S...    91   4e-19

>ref|NP_001001633.1| 40S ribosomal protein S29 [Sus scrofa].
          Length = 56

 Score =  119 bits (298), Expect = 1e-27
 Identities = 53/56 (94%), Positives = 53/56 (94%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MG Q  YWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1   MGPQGFYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56


>ref|XP_003356309.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
          Length = 56

 Score =  115 bits (287), Expect = 3e-26
 Identities = 49/56 (87%), Positives = 52/56 (92%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWSHPRK+ QGSRSC +CSN+HGLI KYGLNMCRQCF QYAKDIGFIKLD
Sbjct: 1   MGHQQLYWSHPRKYSQGSRSCHICSNQHGLIWKYGLNMCRQCFHQYAKDIGFIKLD 56


>ref|XP_003361457.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
          Length = 56

 Score =  106 bits (264), Expect = 1e-23
 Identities = 49/56 (87%), Positives = 50/56 (89%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLY SHPRKFGQGSRSC VCSN H LIRKYGLNMCRQ F QYAKDIGFI+LD
Sbjct: 1   MGHQQLYRSHPRKFGQGSRSCHVCSNLHSLIRKYGLNMCRQYFCQYAKDIGFIELD 56


>ref|XP_003121633.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
          Length = 56

 Score =  106 bits (264), Expect = 1e-23
 Identities = 49/56 (87%), Positives = 50/56 (89%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLY SHPRKFGQGSRSC VCSN H LIRKYGLNMCRQ F QYAKDIGFI+LD
Sbjct: 1   MGHQQLYRSHPRKFGQGSRSCHVCSNLHSLIRKYGLNMCRQYFCQYAKDIGFIELD 56


>ref|XP_003353438.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
          Length = 56

 Score =  106 bits (264), Expect = 1e-23
 Identities = 49/56 (87%), Positives = 50/56 (89%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLY SHPRKFGQGSRSC VCSN H LIRKYGLNMCRQ F QYAKDIGFI+LD
Sbjct: 1   MGHQQLYRSHPRKFGQGSRSCHVCSNLHSLIRKYGLNMCRQYFCQYAKDIGFIELD 56


>ref|XP_003123598.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
          Length = 56

 Score =  105 bits (261), Expect = 3e-23
 Identities = 47/56 (83%), Positives = 49/56 (87%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYW HPRKFGQGSRSC +CSN HGLI+KY LNM  QCF QYAKDIGFIKLD
Sbjct: 1   MGHQQLYWRHPRKFGQGSRSCHLCSNWHGLIQKYRLNMSGQCFCQYAKDIGFIKLD 56


>ref|XP_003133998.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
          Length = 56

 Score = 91.3 bits (225), Expect = 4e-19
 Identities = 40/56 (71%), Positives = 44/56 (78%)
 Frame = +1

Query: 61  MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
           MGHQQLYWS PRKFGQG  +C +CSN H  I+KY L+MC QCF QYAKD  FIKLD
Sbjct: 1   MGHQQLYWSQPRKFGQGPCTCCICSNLHSPIQKYSLSMCPQCFHQYAKDTVFIKLD 56


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,419,910
Number of extensions: 466366
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 7
Length of query: 216
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 121
Effective length of database: 8,978,717
Effective search space: 1086424757
Effective search space used: 1086424757
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000508
         (650 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         432   e-118
Sscrofa_Chr06                                                         412   e-113
Sscrofa_Chr01                                                         383   e-104
Sscrofa_Chr17                                                         325   2e-86
Sscrofa_Chr07                                                         307   4e-81
Sscrofa_Chr16                                                         250   8e-64
Sscrofa_Chr12                                                         232   2e-58
gb|JH118758.1| Sus scrofa unplaced genomic scaffold ChrUScaf2272      222   2e-55
Sscrofa_Chr11                                                         159   2e-36
Sscrofa_Chr03                                                          98   7e-18

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  432 bits (218), Expect = e-118
 Identities = 269/286 (94%)
 Strand = Plus / Minus

                                                                            
Query: 30       ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 56719843 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggaggca 56719784

                                                                            
Query: 90       tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
                ||| |||||||| ||||||||||||||||||||||   ||||||||||| ||||||||||
Sbjct: 56719783 tccgagaaaatttggtcagggttctcgctcttgccacctctgctcaaactggcacggtct 56719724

                                                                            
Query: 150      gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
                ||||| ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||||
Sbjct: 56719723 gatccagaaataccgcctcaatatgagcggccagtgcttctgccagtatgcaaaggatat 56719664

                                                                            
Query: 210      tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccaccttatg 269
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 56719663 tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatctaccttatg 56719604

                                                              
Query: 270      cagaaacaatgttagtgctttgtatataaaataaacatttaaaaat 315
                |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 56719603 cagaaacaatgttagttctttgtatataaaataaatatttaaaaat 56719558



 Score =  432 bits (218), Expect = e-118
 Identities = 269/286 (94%)
 Strand = Plus / Plus

                                                                            
Query: 30       ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 56938379 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggaggca 56938438

                                                                            
Query: 90       tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
                ||| |||||||| ||||||||||||||||||||||   ||||||||||| ||||||||||
Sbjct: 56938439 tccgagaaaatttggtcagggttctcgctcttgccacctctgctcaaactggcacggtct 56938498

                                                                            
Query: 150      gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
                ||||| ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||||
Sbjct: 56938499 gatccagaaataccgcctcaatatgagcggccagtgcttctgccagtatgcaaaggatat 56938558

                                                                            
Query: 210      tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccaccttatg 269
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 56938559 tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatctaccttatg 56938618

                                                              
Query: 270      cagaaacaatgttagtgctttgtatataaaataaacatttaaaaat 315
                |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 56938619 cagaaacaatgttagttctttgtatataaaataaatatttaaaaat 56938664


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  412 bits (208), Expect = e-113
 Identities = 265/284 (93%)
 Strand = Plus / Minus

                                                                            
Query: 29       gccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcc 88
                ||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 79831508 gccttttgccttgttgcaactgagacagcaagatgggtcaccagcagctctactggagcc 79831449

                                                                            
Query: 89       atccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtc 148
                |||||||||||| | |||||||||||||||||||||   |||||||||||| ||| ||||
Sbjct: 79831448 atccaagaaaatacagtcagggttctcgctcttgccacatctgctcaaaccagcatggtc 79831389

                                                                            
Query: 149      tgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggata 208
                ||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 79831388 tgatctggaaatatggcctcaatatgtgccgccagtgcttccaccagtacgcgaaggata 79831329

                                                                            
Query: 209      ttggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccaccttat 268
                |||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 79831328 ttggcttcattaagttggactaagctcccttgaatgggtcatccaggacatctaccttat 79831269

                                                            
Query: 269      gcagaaacaatgttagtgctttgtatataaaataaacatttaaa 312
                |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 79831268 gcagaaacaatgctagttctttgtatataaaataaacatttaaa 79831225



 Score =  101 bits (51), Expect = 5e-19
 Identities = 132/156 (84%), Gaps = 6/156 (3%)
 Strand = Plus / Minus

                                                                             
Query: 126       agtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtg 185
                 |||||||| ||||| ||| ||||||| || ||| ||| ||||| || |||||| ||||||
Sbjct: 145873446 agtctgcttaaacctgcatggtctga-ccagaagtacagcctcgatgtgtgccaccagtg 145873388

                                                                             
Query: 186       cttccgccagtacgcgaaggatattggcttcatcaagttggactaag----cttccttga 241
                  ||||||||| | ||||||||| |  || |||| ||| |||||||||    |||||||||
Sbjct: 145873387 tttccgccagaatgcgaaggatgtcagcgtcattaaggtggactaagtgaacttccttga 145873328

                                                     
Query: 242       atgggtcatccaggacatccaccttat-gcagaaac 276
                 ||||||||||||||||||||||||||| ||||||||
Sbjct: 145873327 atgggtcatccaggacatccaccttatcgcagaaac 145873292


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  383 bits (193), Expect = e-104
 Identities = 256/277 (92%)
 Strand = Plus / Plus

                                                                             
Query: 28        ggccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagc 87
                 |||||||||||||||||||||  ||| ||||||||||||||||||||||||||  |||||
Sbjct: 145119691 ggccttttgcctcgttgcagctaagaaagcaagatgggtcaccagcagctctataggagc 145119750

                                                                             
Query: 88        catccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggt 147
                 ||||| |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||
Sbjct: 145119751 catccgagaaaattcggtcagggttctcgctcttgccatgtctgctcaaacctgcacagt 145119810

                                                                             
Query: 148       ctgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggat 207
                 |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 145119811 ctgatccggaaatatggcctcaatatgtgccgccagtacttctgccagtacgcgaaggat 145119870

                                                                             
Query: 208       attggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccacctta 267
                 |||||||||||  ||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 145119871 attggcttcattgagttggactaagcttccttcaatgggtcatccgggacatctacctta 145119930

                                                      
Query: 268       tgcagaaacaatgttagtgctttgtatataaaataaa 304
                 ||||||||||||| | || ||||||||||||||||||
Sbjct: 145119931 tgcagaaacaatgctggttctttgtatataaaataaa 145119967



 Score =  383 bits (193), Expect = e-104
 Identities = 256/277 (92%)
 Strand = Plus / Plus

                                                                             
Query: 28        ggccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagc 87
                 |||||||||||||||||||||  ||| ||||||||||||||||||||||||||  |||||
Sbjct: 145247851 ggccttttgcctcgttgcagctaagaaagcaagatgggtcaccagcagctctataggagc 145247910

                                                                             
Query: 88        catccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggt 147
                 ||||| |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||
Sbjct: 145247911 catccgagaaaattcggtcagggttctcgctcttgccatgtctgctcaaacctgcacagt 145247970

                                                                             
Query: 148       ctgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggat 207
                 |||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 145247971 ctgatccggaaatatggcctcaatatgtgccgccagtacttctgccagtacgcgaaggat 145248030

                                                                             
Query: 208       attggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccacctta 267
                 |||||||||||  ||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 145248031 attggcttcattgagttggactaagcttccttcaatgggtcatccgggacatctacctta 145248090

                                                      
Query: 268       tgcagaaacaatgttagtgctttgtatataaaataaa 304
                 ||||||||||||| | || ||||||||||||||||||
Sbjct: 145248091 tgcagaaacaatgctggttctttgtatataaaataaa 145248127



 Score =  232 bits (117), Expect = 2e-58
 Identities = 120/121 (99%)
 Strand = Plus / Plus

                                                                             
Query: 2         gaagagcgcatgcgtgcgctaagtctggccttttgcctcgttgcagccgagagagcaaga 61
                 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 199694896 gaagagcgcatgcgtgcgctaagtctgtccttttgcctcgttgcagccgagagagcaaga 199694955

                                                                             
Query: 62        tgggtcaccagcagctctactggagccatccaagaaaattcggtcagggttctcgctctt 121
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199694956 tgggtcaccagcagctctactggagccatccaagaaaattcggtcagggttctcgctctt 199695015

                  
Query: 122       g 122
                 |
Sbjct: 199695016 g 199695016



 Score =  200 bits (101), Expect = 7e-49
 Identities = 101/101 (100%)
 Strand = Plus / Plus

                                                                             
Query: 122       gccgagtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgcc 181
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199695246 gccgagtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgcc 199695305

                                                          
Query: 182       agtgcttccgccagtacgcgaaggatattggcttcatcaag 222
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 199695306 agtgcttccgccagtacgcgaaggatattggcttcatcaag 199695346



 Score =  194 bits (98), Expect = 4e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                             
Query: 221       agttggactaagcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatg 280
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199696681 agttggactaagcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatg 199696740

                                                       
Query: 281       ttagtgctttgtatataaaataaacatttaaaaatact 318
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 199696741 ttagtgctttgtatataaaataaacatttaaaaatact 199696778



 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                            
Query: 95        gaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtctgatc 153
                 |||||||| | |||||||||| ||||||| | |||||| |||||| |||||||||||||
Sbjct: 183640866 gaaaattcagccagggttctcactcttgctgtgtctgcacaaaccagcacggtctgatc 183640808


>Sscrofa_Chr17 
||          Length = 69701581

 Score =  325 bits (164), Expect = 2e-86
 Identities = 176/180 (97%)
 Strand = Plus / Minus

                                                                            
Query: 136      aaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgcttccgccag 195
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 21856681 aaccggcacggtctgatccggaaatacggcctcaatatgtgccgccaatgcttccgccag 21856622

                                                                            
Query: 196      tacgcgaaggatattggcttcatcaagttggactaagcttccttgaatgggtcatccagg 255
                ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21856621 tacacgaaggatattggcttcatcaagttggactaagcttccttgaatgggtcatccagg 21856562

                                                                            
Query: 256      acatccaccttatgcagaaacaatgttagtgctttgtatataaaataaacatttaaaaat 315
                |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 21856561 acatccaccttatgcagaaacaatgttagttctttgtatataaaagaaacatttaaaaat 21856502


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  307 bits (155), Expect = 4e-81
 Identities = 237/264 (89%), Gaps = 4/264 (1%)
 Strand = Plus / Minus

                                                                            
Query: 50       gagagagcaagatgggtcaccagcagctctactggagccatccaagaaaattcggtcagg 109
                ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||
Sbjct: 60590225 gagagagcaagatgggtcaccagcagctctactggagccatctgagaaaattcggccagg 60590166

                                                                            
Query: 110      gttctcgctcttgccgagtctgctcaaaccggcacggtctgatccggaaatacggcctca 169
                |||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||| 
Sbjct: 60590165 gttctcgctcttgctgcgtctgctcaaactggcacggtctgatccggaaatacagcctcg 60590106

                                                                            
Query: 170      atatgtgccgccagtgcttccgccagtacgcgaaggatattggcttcatcaagttggact 229
                ||||||||| |||| ||||| ||||| ||  |||||||  ||||||||| | ||||||||
Sbjct: 60590105 atatgtgccaccagcgcttctgccagcacatgaaggatcctggcttcattaggttggact 60590046

                                                                            
Query: 230      a----agcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatgttagt 285
                |    |||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||
Sbjct: 60590045 aagtgagcttccttgaatgggtcctccaggacatctaccttatgcagaaaccatgctagt 60589986

                                        
Query: 286      gctttgtatataaaataaacattt 309
                 |||||||||||||||||||||||
Sbjct: 60589985 tctttgtatataaaataaacattt 60589962



 Score =  141 bits (71), Expect = 5e-31
 Identities = 194/232 (83%), Gaps = 6/232 (2%)
 Strand = Plus / Plus

                                                                            
Query: 67       caccagcagctctactggagccatccaagaaaattcggtcagggttctcgctcttgccga 126
                ||||||||| | ||||| ||||| | ||||||||| || ||| ||||| |||||||| ||
Sbjct: 35336169 caccagcagatttactgaagccacctaagaaaattaggccagagttcttgctcttgctga 35336228

                                                                            
Query: 127      gtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgc 186
                ||||||||||||  | |||||||||||| ||||||| |||||||||||| || || ||| 
Sbjct: 35336229 gtctgctcaaacttgtacggtctgatccagaaatacagcctcaatatgtaccacctgtgt 35336288

                                                                            
Query: 187      ttccgccagtacgcgaaggatattggcttcatcaagttggactaag----cttccttgaa 242
                | ||  |||||| | |||||||  |||||||| ||||||||| |||    ||||||||||
Sbjct: 35336289 tcccagcagtacacaaaggatacaggcttcattaagttggaccaagtgaacttccttgaa 35336348

                                                                    
Query: 243      tgggtcatccaggacatccacctta-tgcagaaacaatgttagtgctttgta 293
                |||||||| ||||||||| ||||||  ||||||||||||||||  |||||||
Sbjct: 35336349 tgggtcat-caggacatcgaccttagcgcagaaacaatgttagctctttgta 35336399



 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 54/61 (88%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                            
Query: 125      gagtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagt 184
                |||||||||||||| || | |||||||||| |||||| ||||||||||| ||| ||||||
Sbjct: 82961748 gagtctgctcaaactgg-atggtctgatccagaaatatggcctcaatatatgcagccagt 82961806

                 
Query: 185      g 185
                |
Sbjct: 82961807 g 82961807


>Sscrofa_Chr16 
||          Length = 86898991

 Score =  250 bits (126), Expect = 8e-64
 Identities = 244/283 (86%), Gaps = 4/283 (1%)
 Strand = Plus / Minus

                                                                            
Query: 36       gcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagccatccaag 95
                ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 36594646 gcctcgttgcagctgagagagcaagatgggtcaccaacagctctactggagccaaccgag 36594587

                                                                            
Query: 96       aaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtctgatccg 155
                |||||| ||||| ||| || || ||||| |  |||||||||||| |||| ||| ||||| 
Sbjct: 36594586 aaaatttggtcaaggtccttgcacttgctgcatctgctcaaacctgcacagtccgatcca 36594527

                                                                            
Query: 156      gaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatattggctt 215
                ||||||| |||||| |||||||| ||||||||||| |||||| |||||||||| || |||
Sbjct: 36594526 gaaatacagcctcagtatgtgcccccagtgcttccaccagtatgcgaaggatactgtctt 36594467

                                                                            
Query: 216      catcaagttggacta----agcttccttgaatgggtcatccaggacatccaccttatgca 271
                ||| ||||| |||||    |||||||||||||||||||  ||||||||| || ||| |||
Sbjct: 36594466 cattaagttagactaaatgagcttccttgaatgggtcactcaggacatctactttacgca 36594407

                                                           
Query: 272      gaaacaatgttagtgctttgtatataaaataaacatttaaaaa 314
                ||||||||| |||| ||||||| ||| |||||||||| |||||
Sbjct: 36594406 gaaacaatgctagttctttgtacatagaataaacattaaaaaa 36594364


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  232 bits (117), Expect = 2e-58
 Identities = 168/185 (90%)
 Strand = Plus / Minus

                                                                            
Query: 29       gccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcc 88
                ||||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct: 26787201 gccttttgccttgttgcagcagagagagcaagacgggtcaccagcagctctgctggagcc 26787142

                                                                            
Query: 89       atccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtc 148
                |||| |||||||| || ||||||||||||||||||| |||||||||| || |||| ||||
Sbjct: 26787141 atccgagaaaatttggccagggttctcgctcttgccaagtctgctcatactggcatggtc 26787082

                                                                            
Query: 149      tgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggata 208
                |||||| |||||||||||||||||||||| ||  ||||||| |||||||| |||||||||
Sbjct: 26787081 tgatccagaaatacggcctcaatatgtgctgctggtgcttctgccagtactcgaaggata 26787022

                     
Query: 209      ttggc 213
                |||||
Sbjct: 26787021 ttggc 26787017



 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 64/70 (91%)
 Strand = Plus / Minus

                                                                            
Query: 231      agcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatgttagtgcttt 290
                |||||||||||||||||||||||| ||||| ||||||||||||||||||  ||||  |||
Sbjct: 26786718 agcttccttgaatgggtcatccagaacatctaccttatgcagaaacaatactagtttttt 26786659

                          
Query: 291      gtatataaaa 300
                ||||||||||
Sbjct: 26786658 gtatataaaa 26786649


>gb|JH118758.1| Sus scrofa unplaced genomic scaffold ChrUScaf2272
          Length = 126293

 Score =  222 bits (112), Expect = 2e-55
 Identities = 142/152 (93%)
 Strand = Plus / Plus

                                                                         
Query: 127   gtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgc 186
             ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct: 65954 gtctgctcaaacctgcacagtctgatccggaaatatggcctcaatatgtgccgccagtac 66013

                                                                         
Query: 187   ttccgccagtacgcgaaggatattggcttcatcaagttggactaagcttccttgaatggg 246
             ||| ||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||
Sbjct: 66014 ttctgccagtacgcgaaggatattggcttcattgagttggactaagcttccttcaatggg 66073

                                             
Query: 247   tcatccaggacatccaccttatgcagaaacaa 278
             |||||| ||||||| |||||||||||||||||
Sbjct: 66074 tcatccgggacatctaccttatgcagaaacaa 66105



 Score =  141 bits (71), Expect = 5e-31
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                         
Query: 28    ggccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagc 87
             |||||||||||||||||||||  ||| ||||||||||||||||||||||||||  |||||
Sbjct: 65755 ggccttttgcctcgttgcagctaagaaagcaagatgggtcaccagcagctctataggagc 65814

                                                
Query: 88    catccaagaaaattcggtcagggttctcgctcttg 122
             ||||| |||||||||||||||||||||||||||||
Sbjct: 65815 catccgagaaaattcggtcagggttctcgctcttg 65849


>Sscrofa_Chr11 
||          Length = 87690581

 Score =  159 bits (80), Expect = 2e-36
 Identities = 233/285 (81%), Gaps = 18/285 (6%)
 Strand = Plus / Minus

                                                                            
Query: 30       ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
                ||||||||||||||| ||| |||||||||||||||||| |||||||| || || ||||||
Sbjct: 54647671 ccttttgcctcgttgtagctgagagagcaagatgggtccccagcagccctgctcgagcca 54647612

                                                                            
Query: 90       tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
                ||  ||||| ||||| |||||||||| ||||||| | | ||||||| | | ||  |||||
Sbjct: 54647611 tctgagaaatttcggccagggttctcactcttgctgtgcctgctcacatcagctgggtct 54647552

                                                                            
Query: 150      gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
                |||| |||||| | | |||||||||||||||            ||||| | |||||  ||
Sbjct: 54647551 gatctggaaatgccgtctcaatatgtgccgc------------cagtatgtgaagg--at 54647506

                                                                            
Query: 210      tggcttcatcaagttggacta----agcttccttgaatgggtcatccaggacatccacct 265
                ||||||||| |||  ||||||    |||||||||||||||||||||||||||||| ||||
Sbjct: 54647505 tggcttcattaagccggactaagtgagcttccttgaatgggtcatccaggacatctacct 54647446

                                                             
Query: 266      tatgcagaaacaatgttagtgctttgtatataaaataaacattta 310
                ||||||||||||||| |||| | ||| || |||||||||||||||
Sbjct: 54647445 tatgcagaaacaatgctagttccttgcatgtaaaataaacattta 54647401



 Score =  117 bits (59), Expect = 8e-24
 Identities = 230/284 (80%), Gaps = 6/284 (2%)
 Strand = Plus / Minus

                                                                            
Query: 30       ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
                |||||||| || ||||  || ||| ||||||||||||||||||||| |||||||||||||
Sbjct: 29708137 ccttttgcttcattgcctccaagaaagcaagatgggtcaccagcagttctactggagcca 29708078

                                                                            
Query: 90       tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
                ||  || ||||| || |||| |||| |||||||||   |||||||||||| ||| |||||
Sbjct: 29708077 tctgag-aaatttggccaggcttcttgctcttgccatatctgctcaaaccagcagggtct 29708019

                                                                            
Query: 150      gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
                ||  | |||||||  ||||||||||||| ||||||  |   |||||||| | ||||||||
Sbjct: 29708018 gaggcagaaataccacctcaatatgtgctgccagtattattgccagtacacaaaggatat 29707959

                                                                            
Query: 210      tggcttcatcaagttggac----taagcttccttgaatgggtcatccaggacatccacct 265
                 |||||||| || ||||||    | ||||| |||||||||||||||  ||| |||   ||
Sbjct: 29707958 cggcttcattaaattggacaaagtgagctttcttgaatgggtcatcatggaaatctctct 29707899

                                                            
Query: 266      tatgcagaaacaatgttagtgctttgtatataaaataaacattt 309
                ||  ||| ||||||| |||  |||||||||||||||||| ||||
Sbjct: 29707898 tacacag-aacaatgctagctctttgtatataaaataaaaattt 29707856


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 150/182 (82%), Gaps = 5/182 (2%)
 Strand = Plus / Minus

                                                                            
Query: 127      gtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgc 186
                ||||||||||| | ||| ||||||||| |||| |  ||||||| | |||||| |||||| 
Sbjct: 60020260 gtctgctcaaagctgcagggtctgatctggaagtgtggcctcagtttgtgccaccagtgt 60020201

                                                                            
Query: 187      ttccgccagtacgcgaaggatattggcttcatcaagttggactaag----cttccttgaa 242
                ||| |||| |  || |||||||||||||||||  | ||||||||||    ||||||||| 
Sbjct: 60020200 ttctgccactgagc-aaggatattggcttcatatacttggactaagtgatcttccttgag 60020142

                                                                            
Query: 243      tgggtcatccaggacatccaccttatgcagaaacaatgttagtgctttgtatataaaata 302
                |  |||||||||||||||  |||||||||||||||||| |||  |||||||| |||||||
Sbjct: 60020141 tacgtcatccaggacatcttccttatgcagaaacaatgctagctctttgtatgtaaaata 60020082

                  
Query: 303      aa 304
                ||
Sbjct: 60020081 aa 60020080


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,508,745
Number of extensions: 918
Number of successful extensions: 918
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 25
Length of query: 650
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 629
Effective length of database: 2,808,413,156
Effective search space: 1766491875124
Effective search space used: 1766491875124
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)