Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000508
(650 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777229.1| 40S ribosomal protein S29 [Bos taurus]. 127 8e-30
Alignment gi|XP_002700645.1| PREDICTED: ribosomal protein S29-like [Bos t... 127 8e-30
Alignment gi|XP_002690793.1| PREDICTED: ribosomal protein S29-like [Bos t... 124 7e-29
Alignment gi|XP_001251704.1| PREDICTED: ribosomal protein S29-like [Bos t... 124 7e-29
Alignment gi|XP_002695388.1| PREDICTED: ribosomal protein S29-like [Bos t... 115 3e-26
Alignment gi|XP_002702042.1| PREDICTED: ribosomal protein S29-like [Bos t... 115 3e-26
Alignment gi|XP_002694854.1| PREDICTED: ribosomal protein S29-like [Bos t... 97 1e-20
Alignment gi|XP_002701857.1| PREDICTED: ribosomal protein S29-like [Bos t... 97 1e-20
>ref|NP_777229.1| 40S ribosomal protein S29 [Bos taurus].
Length = 56
Score = 127 bits (319), Expect = 8e-30
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_002700645.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
Length = 56
Score = 127 bits (319), Expect = 8e-30
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_002690793.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
Length = 56
Score = 124 bits (311), Expect = 7e-29
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRH LIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHRLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_001251704.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
Length = 56
Score = 124 bits (311), Expect = 7e-29
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRH LIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHRLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_002695388.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
Length = 56
Score = 115 bits (288), Expect = 3e-26
Identities = 52/56 (92%), Positives = 52/56 (92%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKF QGSRS RVCSNRHGLIRK GLNMCRQCFRQY KDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFRQGSRSSRVCSNRHGLIRKCGLNMCRQCFRQYTKDIGFIKLD 56
>ref|XP_002702042.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
Length = 56
Score = 115 bits (288), Expect = 3e-26
Identities = 52/56 (92%), Positives = 52/56 (92%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKF QGSRS RVCSNRHGLIRK GLNMCRQCFRQY KDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFRQGSRSSRVCSNRHGLIRKCGLNMCRQCFRQYTKDIGFIKLD 56
>ref|XP_002694854.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
Length = 56
Score = 97.1 bits (240), Expect = 1e-20
Identities = 43/56 (76%), Positives = 45/56 (80%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYW H RKFGQ SRSC VCSN HGLI+KYGL MC Q F QYAKDI +KLD
Sbjct: 1 MGHQQLYWIHQRKFGQSSRSCWVCSNHHGLIQKYGLKMCHQRFHQYAKDISVVKLD 56
>ref|XP_002701857.1| PREDICTED: ribosomal protein S29-like [Bos taurus].
Length = 56
Score = 97.1 bits (240), Expect = 1e-20
Identities = 43/56 (76%), Positives = 45/56 (80%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYW H RKFGQ SRSC VCSN HGLI+KYGL MC Q F QYAKDI +KLD
Sbjct: 1 MGHQQLYWIHQRKFGQSSRSCWVCSNHHGLIQKYGLKMCHQRFHQYAKDISVVKLD 56
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 17,548,291
Number of extensions: 460492
Number of successful extensions: 1288
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1283
Number of HSP's successfully gapped: 8
Length of query: 216
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 118
Effective length of database: 14,438,750
Effective search space: 1703772500
Effective search space used: 1703772500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000508
(650 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853223.1| PREDICTED: similar to 40S ribosomal protein S29... 127 8e-30
>ref|XP_853223.1| PREDICTED: similar to 40S ribosomal protein S29 [Canis familiaris].
Length = 56
Score = 127 bits (319), Expect = 8e-30
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 17,708,384
Number of extensions: 360305
Number of successful extensions: 1375
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1359
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 117
Effective length of database: 15,574,240
Effective search space: 1822186080
Effective search space used: 1822186080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000508
(650 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001023.1| 40S ribosomal protein S29 isoform 1 [Homo sapie... 127 8e-30
Alignment gi|NP_001025172.1| 40S ribosomal protein S29 isoform 2 [Homo sa... 125 4e-29
>ref|NP_001023.1| 40S ribosomal protein S29 isoform 1 [Homo sapiens].
Length = 56
Score = 127 bits (319), Expect = 8e-30
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|NP_001025172.1| 40S ribosomal protein S29 isoform 2 [Homo sapiens].
Length = 67
Score = 125 bits (313), Expect = 4e-29
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK D
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKKD 56
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 17,253,341
Number of extensions: 346092
Number of successful extensions: 1227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 118
Effective length of database: 15,066,692
Effective search space: 1777869656
Effective search space used: 1777869656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000508
(650 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_900017.1| PREDICTED: 40S ribosomal protein S29-like [Mus ... 127 7e-30
Alignment gi|XP_003086321.1| PREDICTED: 40S ribosomal protein S29-like [M... 127 7e-30
Alignment gi|NP_033119.1| 40S ribosomal protein S29 [Mus musculus]. 127 7e-30
Alignment gi|XP_003084981.1| PREDICTED: 40S ribosomal protein S29-like [M... 125 3e-29
Alignment gi|XP_001474465.1| PREDICTED: 40S ribosomal protein S29-like [M... 125 3e-29
Alignment gi|XP_003084665.1| PREDICTED: 40S ribosomal protein S29-like [M... 124 6e-29
Alignment gi|XP_003086486.1| PREDICTED: 40S ribosomal protein S29-like [M... 124 6e-29
Alignment gi|XP_003084692.1| PREDICTED: 40S ribosomal protein S29-like [M... 115 2e-26
Alignment gi|XP_003086573.1| PREDICTED: 40S ribosomal protein S29-like [M... 115 2e-26
Alignment gi|XP_003085102.1| PREDICTED: 40S ribosomal protein S29-like [M... 115 4e-26
>ref|XP_900017.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 127 bits (319), Expect = 7e-30
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_003086321.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 127 bits (319), Expect = 7e-30
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|NP_033119.1| 40S ribosomal protein S29 [Mus musculus].
Length = 56
Score = 127 bits (319), Expect = 7e-30
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_003084981.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 125 bits (314), Expect = 3e-29
Identities = 54/56 (96%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCR+CSNRHGLIRKYGLN+CRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRICSNRHGLIRKYGLNVCRQCFRQYAKDIGFIKLD 56
>ref|XP_001474465.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 125 bits (314), Expect = 3e-29
Identities = 54/56 (96%), Positives = 56/56 (100%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCR+CSNRHGLIRKYGLN+CRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRICSNRHGLIRKYGLNVCRQCFRQYAKDIGFIKLD 56
>ref|XP_003084665.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 124 bits (311), Expect = 6e-29
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_003086486.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 124 bits (311), Expect = 6e-29
Identities = 55/56 (98%), Positives = 55/56 (98%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_003084692.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 115 bits (289), Expect = 2e-26
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MG QQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LN+CRQCFRQY KD GFIKLD
Sbjct: 1 MGDQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNVCRQCFRQYTKDTGFIKLD 56
>ref|XP_003086573.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 115 bits (289), Expect = 2e-26
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MG QQLYWSHPRKFGQGSRSCRVCSNRHGLIRKY LN+CRQCFRQY KD GFIKLD
Sbjct: 1 MGDQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYRLNVCRQCFRQYTKDTGFIKLD 56
>ref|XP_003085102.1| PREDICTED: 40S ribosomal protein S29-like [Mus musculus].
Length = 56
Score = 115 bits (287), Expect = 4e-26
Identities = 51/56 (91%), Positives = 52/56 (92%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYW+HPRKFGQGSRSC VCSNRHGLI KYGLNM RQCFRQY KDIGFIKLD
Sbjct: 1 MGHQQLYWNHPRKFGQGSRSCCVCSNRHGLILKYGLNMSRQCFRQYVKDIGFIKLD 56
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 14,670,741
Number of extensions: 295605
Number of successful extensions: 1021
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1013
Number of HSP's successfully gapped: 15
Length of query: 216
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 119
Effective length of database: 12,704,067
Effective search space: 1511783973
Effective search space used: 1511783973
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000508
(650 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001633.1| 40S ribosomal protein S29 [Sus scrofa]. 119 1e-27
Alignment gi|XP_003356309.1| PREDICTED: 40S ribosomal protein S29-like [S... 115 3e-26
Alignment gi|XP_003361457.1| PREDICTED: 40S ribosomal protein S29-like [S... 106 1e-23
Alignment gi|XP_003121633.1| PREDICTED: 40S ribosomal protein S29-like [S... 106 1e-23
Alignment gi|XP_003353438.1| PREDICTED: 40S ribosomal protein S29-like [S... 106 1e-23
Alignment gi|XP_003123598.1| PREDICTED: 40S ribosomal protein S29-like [S... 105 3e-23
Alignment gi|XP_003133998.1| PREDICTED: 40S ribosomal protein S29-like [S... 91 4e-19
>ref|NP_001001633.1| 40S ribosomal protein S29 [Sus scrofa].
Length = 56
Score = 119 bits (298), Expect = 1e-27
Identities = 53/56 (94%), Positives = 53/56 (94%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MG Q YWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
Sbjct: 1 MGPQGFYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56
>ref|XP_003356309.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
Length = 56
Score = 115 bits (287), Expect = 3e-26
Identities = 49/56 (87%), Positives = 52/56 (92%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWSHPRK+ QGSRSC +CSN+HGLI KYGLNMCRQCF QYAKDIGFIKLD
Sbjct: 1 MGHQQLYWSHPRKYSQGSRSCHICSNQHGLIWKYGLNMCRQCFHQYAKDIGFIKLD 56
>ref|XP_003361457.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
Length = 56
Score = 106 bits (264), Expect = 1e-23
Identities = 49/56 (87%), Positives = 50/56 (89%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLY SHPRKFGQGSRSC VCSN H LIRKYGLNMCRQ F QYAKDIGFI+LD
Sbjct: 1 MGHQQLYRSHPRKFGQGSRSCHVCSNLHSLIRKYGLNMCRQYFCQYAKDIGFIELD 56
>ref|XP_003121633.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
Length = 56
Score = 106 bits (264), Expect = 1e-23
Identities = 49/56 (87%), Positives = 50/56 (89%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLY SHPRKFGQGSRSC VCSN H LIRKYGLNMCRQ F QYAKDIGFI+LD
Sbjct: 1 MGHQQLYRSHPRKFGQGSRSCHVCSNLHSLIRKYGLNMCRQYFCQYAKDIGFIELD 56
>ref|XP_003353438.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
Length = 56
Score = 106 bits (264), Expect = 1e-23
Identities = 49/56 (87%), Positives = 50/56 (89%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLY SHPRKFGQGSRSC VCSN H LIRKYGLNMCRQ F QYAKDIGFI+LD
Sbjct: 1 MGHQQLYRSHPRKFGQGSRSCHVCSNLHSLIRKYGLNMCRQYFCQYAKDIGFIELD 56
>ref|XP_003123598.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
Length = 56
Score = 105 bits (261), Expect = 3e-23
Identities = 47/56 (83%), Positives = 49/56 (87%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYW HPRKFGQGSRSC +CSN HGLI+KY LNM QCF QYAKDIGFIKLD
Sbjct: 1 MGHQQLYWRHPRKFGQGSRSCHLCSNWHGLIQKYRLNMSGQCFCQYAKDIGFIKLD 56
>ref|XP_003133998.1| PREDICTED: 40S ribosomal protein S29-like [Sus scrofa].
Length = 56
Score = 91.3 bits (225), Expect = 4e-19
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = +1
Query: 61 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 228
MGHQQLYWS PRKFGQG +C +CSN H I+KY L+MC QCF QYAKD FIKLD
Sbjct: 1 MGHQQLYWSQPRKFGQGPCTCCICSNLHSPIQKYSLSMCPQCFHQYAKDTVFIKLD 56
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,419,910
Number of extensions: 466366
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 7
Length of query: 216
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 121
Effective length of database: 8,978,717
Effective search space: 1086424757
Effective search space used: 1086424757
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000508
(650 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 432 e-118
Sscrofa_Chr06 412 e-113
Sscrofa_Chr01 383 e-104
Sscrofa_Chr17 325 2e-86
Sscrofa_Chr07 307 4e-81
Sscrofa_Chr16 250 8e-64
Sscrofa_Chr12 232 2e-58
gb|JH118758.1| Sus scrofa unplaced genomic scaffold ChrUScaf2272 222 2e-55
Sscrofa_Chr11 159 2e-36
Sscrofa_Chr03 98 7e-18
>Sscrofa_Chr02
|| Length = 162569375
Score = 432 bits (218), Expect = e-118
Identities = 269/286 (94%)
Strand = Plus / Minus
Query: 30 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 56719843 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggaggca 56719784
Query: 90 tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 56719783 tccgagaaaatttggtcagggttctcgctcttgccacctctgctcaaactggcacggtct 56719724
Query: 150 gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
||||| ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||||
Sbjct: 56719723 gatccagaaataccgcctcaatatgagcggccagtgcttctgccagtatgcaaaggatat 56719664
Query: 210 tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccaccttatg 269
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 56719663 tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatctaccttatg 56719604
Query: 270 cagaaacaatgttagtgctttgtatataaaataaacatttaaaaat 315
|||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 56719603 cagaaacaatgttagttctttgtatataaaataaatatttaaaaat 56719558
Score = 432 bits (218), Expect = e-118
Identities = 269/286 (94%)
Strand = Plus / Plus
Query: 30 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 56938379 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggaggca 56938438
Query: 90 tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 56938439 tccgagaaaatttggtcagggttctcgctcttgccacctctgctcaaactggcacggtct 56938498
Query: 150 gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
||||| ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||||
Sbjct: 56938499 gatccagaaataccgcctcaatatgagcggccagtgcttctgccagtatgcaaaggatat 56938558
Query: 210 tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccaccttatg 269
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 56938559 tggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatctaccttatg 56938618
Query: 270 cagaaacaatgttagtgctttgtatataaaataaacatttaaaaat 315
|||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 56938619 cagaaacaatgttagttctttgtatataaaataaatatttaaaaat 56938664
>Sscrofa_Chr06
|| Length = 157765593
Score = 412 bits (208), Expect = e-113
Identities = 265/284 (93%)
Strand = Plus / Minus
Query: 29 gccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcc 88
||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 79831508 gccttttgccttgttgcaactgagacagcaagatgggtcaccagcagctctactggagcc 79831449
Query: 89 atccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtc 148
|||||||||||| | ||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct: 79831448 atccaagaaaatacagtcagggttctcgctcttgccacatctgctcaaaccagcatggtc 79831389
Query: 149 tgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggata 208
||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 79831388 tgatctggaaatatggcctcaatatgtgccgccagtgcttccaccagtacgcgaaggata 79831329
Query: 209 ttggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccaccttat 268
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 79831328 ttggcttcattaagttggactaagctcccttgaatgggtcatccaggacatctaccttat 79831269
Query: 269 gcagaaacaatgttagtgctttgtatataaaataaacatttaaa 312
|||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 79831268 gcagaaacaatgctagttctttgtatataaaataaacatttaaa 79831225
Score = 101 bits (51), Expect = 5e-19
Identities = 132/156 (84%), Gaps = 6/156 (3%)
Strand = Plus / Minus
Query: 126 agtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtg 185
|||||||| ||||| ||| ||||||| || ||| ||| ||||| || |||||| ||||||
Sbjct: 145873446 agtctgcttaaacctgcatggtctga-ccagaagtacagcctcgatgtgtgccaccagtg 145873388
Query: 186 cttccgccagtacgcgaaggatattggcttcatcaagttggactaag----cttccttga 241
||||||||| | ||||||||| | || |||| ||| ||||||||| |||||||||
Sbjct: 145873387 tttccgccagaatgcgaaggatgtcagcgtcattaaggtggactaagtgaacttccttga 145873328
Query: 242 atgggtcatccaggacatccaccttat-gcagaaac 276
||||||||||||||||||||||||||| ||||||||
Sbjct: 145873327 atgggtcatccaggacatccaccttatcgcagaaac 145873292
>Sscrofa_Chr01
|| Length = 315321322
Score = 383 bits (193), Expect = e-104
Identities = 256/277 (92%)
Strand = Plus / Plus
Query: 28 ggccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagc 87
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 145119691 ggccttttgcctcgttgcagctaagaaagcaagatgggtcaccagcagctctataggagc 145119750
Query: 88 catccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggt 147
||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| ||
Sbjct: 145119751 catccgagaaaattcggtcagggttctcgctcttgccatgtctgctcaaacctgcacagt 145119810
Query: 148 ctgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggat 207
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 145119811 ctgatccggaaatatggcctcaatatgtgccgccagtacttctgccagtacgcgaaggat 145119870
Query: 208 attggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccacctta 267
||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 145119871 attggcttcattgagttggactaagcttccttcaatgggtcatccgggacatctacctta 145119930
Query: 268 tgcagaaacaatgttagtgctttgtatataaaataaa 304
||||||||||||| | || ||||||||||||||||||
Sbjct: 145119931 tgcagaaacaatgctggttctttgtatataaaataaa 145119967
Score = 383 bits (193), Expect = e-104
Identities = 256/277 (92%)
Strand = Plus / Plus
Query: 28 ggccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagc 87
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 145247851 ggccttttgcctcgttgcagctaagaaagcaagatgggtcaccagcagctctataggagc 145247910
Query: 88 catccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggt 147
||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| ||
Sbjct: 145247911 catccgagaaaattcggtcagggttctcgctcttgccatgtctgctcaaacctgcacagt 145247970
Query: 148 ctgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggat 207
|||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 145247971 ctgatccggaaatatggcctcaatatgtgccgccagtacttctgccagtacgcgaaggat 145248030
Query: 208 attggcttcatcaagttggactaagcttccttgaatgggtcatccaggacatccacctta 267
||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 145248031 attggcttcattgagttggactaagcttccttcaatgggtcatccgggacatctacctta 145248090
Query: 268 tgcagaaacaatgttagtgctttgtatataaaataaa 304
||||||||||||| | || ||||||||||||||||||
Sbjct: 145248091 tgcagaaacaatgctggttctttgtatataaaataaa 145248127
Score = 232 bits (117), Expect = 2e-58
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 2 gaagagcgcatgcgtgcgctaagtctggccttttgcctcgttgcagccgagagagcaaga 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 199694896 gaagagcgcatgcgtgcgctaagtctgtccttttgcctcgttgcagccgagagagcaaga 199694955
Query: 62 tgggtcaccagcagctctactggagccatccaagaaaattcggtcagggttctcgctctt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199694956 tgggtcaccagcagctctactggagccatccaagaaaattcggtcagggttctcgctctt 199695015
Query: 122 g 122
|
Sbjct: 199695016 g 199695016
Score = 200 bits (101), Expect = 7e-49
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 122 gccgagtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgcc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199695246 gccgagtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgcc 199695305
Query: 182 agtgcttccgccagtacgcgaaggatattggcttcatcaag 222
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 199695306 agtgcttccgccagtacgcgaaggatattggcttcatcaag 199695346
Score = 194 bits (98), Expect = 4e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 221 agttggactaagcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199696681 agttggactaagcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatg 199696740
Query: 281 ttagtgctttgtatataaaataaacatttaaaaatact 318
||||||||||||||||||||||||||||||||||||||
Sbjct: 199696741 ttagtgctttgtatataaaataaacatttaaaaatact 199696778
Score = 61.9 bits (31), Expect = 4e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 95 gaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtctgatc 153
|||||||| | |||||||||| ||||||| | |||||| |||||| |||||||||||||
Sbjct: 183640866 gaaaattcagccagggttctcactcttgctgtgtctgcacaaaccagcacggtctgatc 183640808
>Sscrofa_Chr17
|| Length = 69701581
Score = 325 bits (164), Expect = 2e-86
Identities = 176/180 (97%)
Strand = Plus / Minus
Query: 136 aaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgcttccgccag 195
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 21856681 aaccggcacggtctgatccggaaatacggcctcaatatgtgccgccaatgcttccgccag 21856622
Query: 196 tacgcgaaggatattggcttcatcaagttggactaagcttccttgaatgggtcatccagg 255
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21856621 tacacgaaggatattggcttcatcaagttggactaagcttccttgaatgggtcatccagg 21856562
Query: 256 acatccaccttatgcagaaacaatgttagtgctttgtatataaaataaacatttaaaaat 315
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 21856561 acatccaccttatgcagaaacaatgttagttctttgtatataaaagaaacatttaaaaat 21856502
>Sscrofa_Chr07
|| Length = 134764511
Score = 307 bits (155), Expect = 4e-81
Identities = 237/264 (89%), Gaps = 4/264 (1%)
Strand = Plus / Minus
Query: 50 gagagagcaagatgggtcaccagcagctctactggagccatccaagaaaattcggtcagg 109
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 60590225 gagagagcaagatgggtcaccagcagctctactggagccatctgagaaaattcggccagg 60590166
Query: 110 gttctcgctcttgccgagtctgctcaaaccggcacggtctgatccggaaatacggcctca 169
|||||||||||||| | |||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 60590165 gttctcgctcttgctgcgtctgctcaaactggcacggtctgatccggaaatacagcctcg 60590106
Query: 170 atatgtgccgccagtgcttccgccagtacgcgaaggatattggcttcatcaagttggact 229
||||||||| |||| ||||| ||||| || ||||||| ||||||||| | ||||||||
Sbjct: 60590105 atatgtgccaccagcgcttctgccagcacatgaaggatcctggcttcattaggttggact 60590046
Query: 230 a----agcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatgttagt 285
| |||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||
Sbjct: 60590045 aagtgagcttccttgaatgggtcctccaggacatctaccttatgcagaaaccatgctagt 60589986
Query: 286 gctttgtatataaaataaacattt 309
|||||||||||||||||||||||
Sbjct: 60589985 tctttgtatataaaataaacattt 60589962
Score = 141 bits (71), Expect = 5e-31
Identities = 194/232 (83%), Gaps = 6/232 (2%)
Strand = Plus / Plus
Query: 67 caccagcagctctactggagccatccaagaaaattcggtcagggttctcgctcttgccga 126
||||||||| | ||||| ||||| | ||||||||| || ||| ||||| |||||||| ||
Sbjct: 35336169 caccagcagatttactgaagccacctaagaaaattaggccagagttcttgctcttgctga 35336228
Query: 127 gtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgc 186
|||||||||||| | |||||||||||| ||||||| |||||||||||| || || |||
Sbjct: 35336229 gtctgctcaaacttgtacggtctgatccagaaatacagcctcaatatgtaccacctgtgt 35336288
Query: 187 ttccgccagtacgcgaaggatattggcttcatcaagttggactaag----cttccttgaa 242
| || |||||| | ||||||| |||||||| ||||||||| ||| ||||||||||
Sbjct: 35336289 tcccagcagtacacaaaggatacaggcttcattaagttggaccaagtgaacttccttgaa 35336348
Query: 243 tgggtcatccaggacatccacctta-tgcagaaacaatgttagtgctttgta 293
|||||||| ||||||||| |||||| |||||||||||||||| |||||||
Sbjct: 35336349 tgggtcat-caggacatcgaccttagcgcagaaacaatgttagctctttgta 35336399
Score = 58.0 bits (29), Expect = 6e-06
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 125 gagtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagt 184
|||||||||||||| || | |||||||||| |||||| ||||||||||| ||| ||||||
Sbjct: 82961748 gagtctgctcaaactgg-atggtctgatccagaaatatggcctcaatatatgcagccagt 82961806
Query: 185 g 185
|
Sbjct: 82961807 g 82961807
>Sscrofa_Chr16
|| Length = 86898991
Score = 250 bits (126), Expect = 8e-64
Identities = 244/283 (86%), Gaps = 4/283 (1%)
Strand = Plus / Minus
Query: 36 gcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagccatccaag 95
||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct: 36594646 gcctcgttgcagctgagagagcaagatgggtcaccaacagctctactggagccaaccgag 36594587
Query: 96 aaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtctgatccg 155
|||||| ||||| ||| || || ||||| | |||||||||||| |||| ||| |||||
Sbjct: 36594586 aaaatttggtcaaggtccttgcacttgctgcatctgctcaaacctgcacagtccgatcca 36594527
Query: 156 gaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatattggctt 215
||||||| |||||| |||||||| ||||||||||| |||||| |||||||||| || |||
Sbjct: 36594526 gaaatacagcctcagtatgtgcccccagtgcttccaccagtatgcgaaggatactgtctt 36594467
Query: 216 catcaagttggacta----agcttccttgaatgggtcatccaggacatccaccttatgca 271
||| ||||| ||||| ||||||||||||||||||| ||||||||| || ||| |||
Sbjct: 36594466 cattaagttagactaaatgagcttccttgaatgggtcactcaggacatctactttacgca 36594407
Query: 272 gaaacaatgttagtgctttgtatataaaataaacatttaaaaa 314
||||||||| |||| ||||||| ||| |||||||||| |||||
Sbjct: 36594406 gaaacaatgctagttctttgtacatagaataaacattaaaaaa 36594364
>Sscrofa_Chr12
|| Length = 63588571
Score = 232 bits (117), Expect = 2e-58
Identities = 168/185 (90%)
Strand = Plus / Minus
Query: 29 gccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcc 88
||||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct: 26787201 gccttttgccttgttgcagcagagagagcaagacgggtcaccagcagctctgctggagcc 26787142
Query: 89 atccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtc 148
|||| |||||||| || ||||||||||||||||||| |||||||||| || |||| ||||
Sbjct: 26787141 atccgagaaaatttggccagggttctcgctcttgccaagtctgctcatactggcatggtc 26787082
Query: 149 tgatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggata 208
|||||| |||||||||||||||||||||| || ||||||| |||||||| |||||||||
Sbjct: 26787081 tgatccagaaatacggcctcaatatgtgctgctggtgcttctgccagtactcgaaggata 26787022
Query: 209 ttggc 213
|||||
Sbjct: 26787021 ttggc 26787017
Score = 91.7 bits (46), Expect = 4e-16
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 231 agcttccttgaatgggtcatccaggacatccaccttatgcagaaacaatgttagtgcttt 290
|||||||||||||||||||||||| ||||| |||||||||||||||||| |||| |||
Sbjct: 26786718 agcttccttgaatgggtcatccagaacatctaccttatgcagaaacaatactagtttttt 26786659
Query: 291 gtatataaaa 300
||||||||||
Sbjct: 26786658 gtatataaaa 26786649
>gb|JH118758.1| Sus scrofa unplaced genomic scaffold ChrUScaf2272
Length = 126293
Score = 222 bits (112), Expect = 2e-55
Identities = 142/152 (93%)
Strand = Plus / Plus
Query: 127 gtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgc 186
||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |
Sbjct: 65954 gtctgctcaaacctgcacagtctgatccggaaatatggcctcaatatgtgccgccagtac 66013
Query: 187 ttccgccagtacgcgaaggatattggcttcatcaagttggactaagcttccttgaatggg 246
||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 66014 ttctgccagtacgcgaaggatattggcttcattgagttggactaagcttccttcaatggg 66073
Query: 247 tcatccaggacatccaccttatgcagaaacaa 278
|||||| ||||||| |||||||||||||||||
Sbjct: 66074 tcatccgggacatctaccttatgcagaaacaa 66105
Score = 141 bits (71), Expect = 5e-31
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 28 ggccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagc 87
||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 65755 ggccttttgcctcgttgcagctaagaaagcaagatgggtcaccagcagctctataggagc 65814
Query: 88 catccaagaaaattcggtcagggttctcgctcttg 122
||||| |||||||||||||||||||||||||||||
Sbjct: 65815 catccgagaaaattcggtcagggttctcgctcttg 65849
>Sscrofa_Chr11
|| Length = 87690581
Score = 159 bits (80), Expect = 2e-36
Identities = 233/285 (81%), Gaps = 18/285 (6%)
Strand = Plus / Minus
Query: 30 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
||||||||||||||| ||| |||||||||||||||||| |||||||| || || ||||||
Sbjct: 54647671 ccttttgcctcgttgtagctgagagagcaagatgggtccccagcagccctgctcgagcca 54647612
Query: 90 tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
|| ||||| ||||| |||||||||| ||||||| | | ||||||| | | || |||||
Sbjct: 54647611 tctgagaaatttcggccagggttctcactcttgctgtgcctgctcacatcagctgggtct 54647552
Query: 150 gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
|||| |||||| | | ||||||||||||||| ||||| | ||||| ||
Sbjct: 54647551 gatctggaaatgccgtctcaatatgtgccgc------------cagtatgtgaagg--at 54647506
Query: 210 tggcttcatcaagttggacta----agcttccttgaatgggtcatccaggacatccacct 265
||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 54647505 tggcttcattaagccggactaagtgagcttccttgaatgggtcatccaggacatctacct 54647446
Query: 266 tatgcagaaacaatgttagtgctttgtatataaaataaacattta 310
||||||||||||||| |||| | ||| || |||||||||||||||
Sbjct: 54647445 tatgcagaaacaatgctagttccttgcatgtaaaataaacattta 54647401
Score = 117 bits (59), Expect = 8e-24
Identities = 230/284 (80%), Gaps = 6/284 (2%)
Strand = Plus / Minus
Query: 30 ccttttgcctcgttgcagccgagagagcaagatgggtcaccagcagctctactggagcca 89
|||||||| || |||| || ||| ||||||||||||||||||||| |||||||||||||
Sbjct: 29708137 ccttttgcttcattgcctccaagaaagcaagatgggtcaccagcagttctactggagcca 29708078
Query: 90 tccaagaaaattcggtcagggttctcgctcttgccgagtctgctcaaaccggcacggtct 149
|| || ||||| || |||| |||| ||||||||| |||||||||||| ||| |||||
Sbjct: 29708077 tctgag-aaatttggccaggcttcttgctcttgccatatctgctcaaaccagcagggtct 29708019
Query: 150 gatccggaaatacggcctcaatatgtgccgccagtgcttccgccagtacgcgaaggatat 209
|| | ||||||| ||||||||||||| |||||| | |||||||| | ||||||||
Sbjct: 29708018 gaggcagaaataccacctcaatatgtgctgccagtattattgccagtacacaaaggatat 29707959
Query: 210 tggcttcatcaagttggac----taagcttccttgaatgggtcatccaggacatccacct 265
|||||||| || |||||| | ||||| ||||||||||||||| ||| ||| ||
Sbjct: 29707958 cggcttcattaaattggacaaagtgagctttcttgaatgggtcatcatggaaatctctct 29707899
Query: 266 tatgcagaaacaatgttagtgctttgtatataaaataaacattt 309
|| ||| ||||||| ||| |||||||||||||||||| ||||
Sbjct: 29707898 tacacag-aacaatgctagctctttgtatataaaataaaaattt 29707856
>Sscrofa_Chr03
|| Length = 144787322
Score = 97.6 bits (49), Expect = 7e-18
Identities = 150/182 (82%), Gaps = 5/182 (2%)
Strand = Plus / Minus
Query: 127 gtctgctcaaaccggcacggtctgatccggaaatacggcctcaatatgtgccgccagtgc 186
||||||||||| | ||| ||||||||| |||| | ||||||| | |||||| ||||||
Sbjct: 60020260 gtctgctcaaagctgcagggtctgatctggaagtgtggcctcagtttgtgccaccagtgt 60020201
Query: 187 ttccgccagtacgcgaaggatattggcttcatcaagttggactaag----cttccttgaa 242
||| |||| | || ||||||||||||||||| | |||||||||| |||||||||
Sbjct: 60020200 ttctgccactgagc-aaggatattggcttcatatacttggactaagtgatcttccttgag 60020142
Query: 243 tgggtcatccaggacatccaccttatgcagaaacaatgttagtgctttgtatataaaata 302
| ||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||
Sbjct: 60020141 tacgtcatccaggacatcttccttatgcagaaacaatgctagctctttgtatgtaaaata 60020082
Query: 303 aa 304
||
Sbjct: 60020081 aa 60020080
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,508,745
Number of extensions: 918
Number of successful extensions: 918
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 25
Length of query: 650
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 629
Effective length of database: 2,808,413,156
Effective search space: 1766491875124
Effective search space used: 1766491875124
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)