Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000589
(641 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029888.1| 40S ribosomal protein S10 [Bos taurus]. 307 4e-84
>ref|NP_001029888.1| 40S ribosomal protein S10 [Bos taurus].
Length = 165
Score = 307 bits (787), Expect = 4e-84
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 20,259,337
Number of extensions: 540530
Number of successful extensions: 2047
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2040
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 115
Effective length of database: 14,438,750
Effective search space: 1660456250
Effective search space used: 1660456250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000589
(641 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532112.2| PREDICTED: similar to 40S ribosomal protein S10... 307 5e-84
Alignment gi|XP_537583.2| PREDICTED: similar to 40S ribosomal protein S10... 306 1e-83
Alignment gi|XP_535122.1| PREDICTED: similar to 40S ribosomal protein S10... 302 1e-82
Alignment gi|XP_539204.2| PREDICTED: similar to plectin 1 isoform 1 isofo... 128 5e-30
Alignment gi|XP_857253.1| PREDICTED: similar to plectin 1 isoform 1 isofo... 128 5e-30
>ref|XP_532112.2| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris].
Length = 440
Score = 307 bits (787), Expect = 5e-84
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 150 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 209
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 210 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 269
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 270 EADRDTYRRSAVPPGADKKAEAGAGSATE 298
>ref|XP_537583.2| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris].
Length = 244
Score = 306 bits (783), Expect = 1e-83
Identities = 147/149 (98%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKN+IAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 80 MLMPKKNQIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 139
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 140 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 199
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 200 EADRDTYRRSAVPPGADKKAEAGAGSATE 228
>ref|XP_535122.1| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris].
Length = 165
Score = 302 bits (774), Expect = 1e-82
Identities = 147/149 (98%), Positives = 147/149 (98%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFY YLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61 QFAWRHFYCYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|XP_539204.2| PREDICTED: similar to plectin 1 isoform 1 isoform 1 [Canis
familiaris].
Length = 4686
Score = 128 bits (321), Expect = 5e-30
Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
MLMP+ A+YE+LF+EGVMVAKKD P+ HP + V NL VM+AM SL++RG V
Sbjct: 5 MLMPRDQLRAVYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRARGLV 61
Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR 338
+E FAWRHFYWYLTNEGI +LR YLHLPPEIVPA+L+R R
Sbjct: 62 RETFAWRHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVR 101
>ref|XP_857253.1| PREDICTED: similar to plectin 1 isoform 1 isoform 6 [Canis
familiaris].
Length = 4691
Score = 128 bits (321), Expect = 5e-30
Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
MLMP+ A+YE+LF+EGVMVAKKD P+ HP + V NL VM+AM SL++RG V
Sbjct: 5 MLMPRDQLRAVYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRARGLV 61
Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR 338
+E FAWRHFYWYLTNEGI +LR YLHLPPEIVPA+L+R R
Sbjct: 62 RETFAWRHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVR 101
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 20,958,818
Number of extensions: 512072
Number of successful extensions: 2272
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 5
Length of query: 213
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,607,576
Effective search space: 1794871240
Effective search space used: 1794871240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000589
(641 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001189399.1| RPS10-NUDT3 protein [Homo sapiens]. 307 4e-84
Alignment gi|NP_001191020.1| 40S ribosomal protein S10 [Homo sapiens]. 307 4e-84
Alignment gi|NP_001190174.1| 40S ribosomal protein S10 [Homo sapiens]. 307 4e-84
Alignment gi|NP_001005.1| 40S ribosomal protein S10 [Homo sapiens]. 307 4e-84
Alignment gi|NP_958782.1| plectin isoform 1 [Homo sapiens]. 126 1e-29
Alignment gi|XP_003119005.1| PREDICTED: hypothetical protein LOC100506255... 101 6e-22
Alignment gi|XP_003403684.1| PREDICTED: hypothetical protein LOC100506255... 98 5e-21
>ref|NP_001189399.1| RPS10-NUDT3 protein [Homo sapiens].
Length = 291
Score = 307 bits (787), Expect = 4e-84
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|NP_001191020.1| 40S ribosomal protein S10 [Homo sapiens].
Length = 165
Score = 307 bits (787), Expect = 4e-84
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|NP_001190174.1| 40S ribosomal protein S10 [Homo sapiens].
Length = 165
Score = 307 bits (787), Expect = 4e-84
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|NP_001005.1| 40S ribosomal protein S10 [Homo sapiens].
Length = 165
Score = 307 bits (787), Expect = 4e-84
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|NP_958782.1| plectin isoform 1 [Homo sapiens].
Length = 4684
Score = 126 bits (317), Expect = 1e-29
Identities = 73/141 (51%), Positives = 88/141 (62%), Gaps = 12/141 (8%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
MLMP+ AIYE+LF+EGVMVAKKD P+ HP + V NL VM+AM SL++RG V
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRARGLV 61
Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRP----------KG 368
+E FAW HFYWYLTNEGI +LR YLHLPPEIVPA+L+R R P +G
Sbjct: 62 RETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQG 121
Query: 369 LEGERPARFTRGEADRDTYRR 431
G P R ++ YRR
Sbjct: 122 PLGSPPKRGPLPTEEQRVYRR 142
>ref|XP_003119005.1| PREDICTED: hypothetical protein LOC100506255 [Homo sapiens].
Length = 195
Score = 101 bits (251), Expect = 6e-22
Identities = 56/88 (63%), Positives = 66/88 (75%)
Frame = -1
Query: 398 CESCRSLSLQTFGPWPASLRTAAAQGSRHNLRGEVEVITEILDTLVGKVPIEMSPSKLFL 219
C SCRS++LQTF P PASL+TA A GSRH L+G++ VI EILD VG+VP+EMSP KL L
Sbjct: 91 CGSCRSVTLQTFRPQPASLQTAVAWGSRHALQGQMVVIAEILDPHVGEVPVEMSPGKL-L 149
Query: 218 HVAS*LE*LHGLHDVKIRHILVRQLGVL 135
S E L GLHDVK+ HIL+ QL VL
Sbjct: 150 PATSGPERLPGLHDVKVGHILICQLRVL 177
>ref|XP_003403684.1| PREDICTED: hypothetical protein LOC100506255 [Homo sapiens].
Length = 195
Score = 98.2 bits (243), Expect = 5e-21
Identities = 55/88 (62%), Positives = 65/88 (73%)
Frame = -1
Query: 398 CESCRSLSLQTFGPWPASLRTAAAQGSRHNLRGEVEVITEILDTLVGKVPIEMSPSKLFL 219
C SCRS++LQTF P PASL+TA A GSRH L+G++ VI EIL VG+VP+EMSP KL L
Sbjct: 91 CGSCRSVTLQTFRPQPASLQTAVAWGSRHALQGQMVVIAEILAPHVGEVPVEMSPGKL-L 149
Query: 218 HVAS*LE*LHGLHDVKIRHILVRQLGVL 135
S E L GLHDVK+ HIL+ QL VL
Sbjct: 150 PATSGPERLPGLHDVKVGHILICQLRVL 177
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 20,516,614
Number of extensions: 496104
Number of successful extensions: 1969
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1960
Number of HSP's successfully gapped: 7
Length of query: 213
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,066,692
Effective search space: 1732669580
Effective search space used: 1732669580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000589
(641 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080239.1| 40S ribosomal protein S10 [Mus musculus]. 307 5e-84
Alignment gi|NP_958791.2| plectin isoform 1 [Mus musculus]. 126 2e-29
Alignment gi|NP_001157012.1| plectin isoform 12alpha [Mus musculus]. 126 2e-29
>ref|NP_080239.1| 40S ribosomal protein S10 [Mus musculus].
Length = 165
Score = 307 bits (786), Expect = 5e-84
Identities = 148/149 (99%), Positives = 148/149 (99%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKG EGERPARFTRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|NP_958791.2| plectin isoform 1 [Mus musculus].
Length = 4686
Score = 126 bits (316), Expect = 2e-29
Identities = 80/159 (50%), Positives = 92/159 (57%), Gaps = 23/159 (14%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
MLMP AIYE+LF+EGVMVAKKD P+ HP + V NL VM+AM SLK+RG V
Sbjct: 5 MLMPLDRLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLKARGLV 61
Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET----------------- 347
+E FAW HFYWYLTNEGI +LR YLHLPPEIVPA+L+R R
Sbjct: 62 RETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSPHVQTMQ 121
Query: 348 ---GRPRPKG-LEGERPARFTRGEADRDTYRRSAVPPGA 452
G P +G L E PAR +R YRR GA
Sbjct: 122 GPLGCPPKRGPLPAEDPAR-----EERQVYRRKEREEGA 155
>ref|NP_001157012.1| plectin isoform 12alpha [Mus musculus].
Length = 4691
Score = 126 bits (316), Expect = 2e-29
Identities = 80/159 (50%), Positives = 92/159 (57%), Gaps = 23/159 (14%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
MLMP AIYE+LF+EGVMVAKKD P+ HP + V NL VM+AM SLK+RG V
Sbjct: 5 MLMPLDRLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLKARGLV 61
Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET----------------- 347
+E FAW HFYWYLTNEGI +LR YLHLPPEIVPA+L+R R
Sbjct: 62 RETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSPHVQTMQ 121
Query: 348 ---GRPRPKG-LEGERPARFTRGEADRDTYRRSAVPPGA 452
G P +G L E PAR +R YRR GA
Sbjct: 122 GPLGCPPKRGPLPAEDPAR-----EERQVYRRKEREEGA 155
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 17,431,585
Number of extensions: 419162
Number of successful extensions: 1519
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1514
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 116
Effective length of database: 12,704,067
Effective search space: 1473671772
Effective search space used: 1473671772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000589
(641 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356659.1| PREDICTED: 40S ribosomal protein S10 [Sus sc... 310 5e-85
Alignment gi|XP_003128396.1| PREDICTED: 40S ribosomal protein S10 isoform... 310 5e-85
Alignment gi|XP_001928564.1| PREDICTED: 40S ribosomal protein S10 isoform... 310 5e-85
>ref|XP_003356659.1| PREDICTED: 40S ribosomal protein S10 [Sus scrofa].
Length = 165
Score = 310 bits (793), Expect = 5e-85
Identities = 149/149 (100%), Positives = 149/149 (100%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|XP_003128396.1| PREDICTED: 40S ribosomal protein S10 isoform 2 [Sus scrofa].
Length = 165
Score = 310 bits (793), Expect = 5e-85
Identities = 149/149 (100%), Positives = 149/149 (100%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
>ref|XP_001928564.1| PREDICTED: 40S ribosomal protein S10 isoform 1 [Sus scrofa].
Length = 165
Score = 310 bits (793), Expect = 5e-85
Identities = 149/149 (100%), Positives = 149/149 (100%)
Frame = +3
Query: 45 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 120
Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,499,925
Number of extensions: 417607
Number of successful extensions: 1350
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 118
Effective length of database: 8,978,717
Effective search space: 1059488606
Effective search space used: 1059488606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000589
(641 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 351 3e-94
Sscrofa_Chr12 137 8e-30
Sscrofa_Chr13 107 7e-21
>Sscrofa_Chr07
|| Length = 134764511
Score = 351 bits (177), Expect = 3e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 192 cagtcactcaagtcacgaggctacgtgaaggaacagtttgcttggagacatttctattgg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35115965 cagtcactcaagtcacgaggctacgtgaaggaacagtttgcttggagacatttctattgg 35115906
Query: 252 taccttaccaacgagggtatccagtatctccgtgattacctccacctcccccctgagatt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35115905 taccttaccaacgagggtatccagtatctccgtgattacctccacctcccccctgagatt 35115846
Query: 312 gtgcctgctaccctgcgccgcagccgtcctgagactggcaggccacggcccaaaggt 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35115845 gtgcctgctaccctgcgccgcagccgtcctgagactggcaggccacggcccaaaggt 35115789
Score = 299 bits (151), Expect = 1e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 44 gatgctgatgcccaagaagaaccggattgccatttatgaactccttttcaaggagggagt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35116327 gatgctgatgcccaagaagaaccggattgccatttatgaactccttttcaaggagggagt 35116268
Query: 104 gatggtggccaaaaaagacgtgcacatgccgaagcaccccgagctggcggacaagaatgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35116267 gatggtggccaaaaaagacgtgcacatgccgaagcaccccgagctggcggacaagaatgt 35116208
Query: 164 gcctaatcttcacgtcatgaaggccatgcag 194
|||||||||||||||||||||||||||||||
Sbjct: 35116207 gcctaatcttcacgtcatgaaggccatgcag 35116177
Score = 168 bits (85), Expect = 2e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 501 agaggcggctttggtcgtggacgtggtcagcctcctcagtaaagttggaagagattgttt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35110441 agaggcggctttggtcgtggacgtggtcagcctcctcagtaaagttggaagagattgttt 35110382
Query: 561 tgtgttgaataaacctgtagccaga 585
|||||||||||||||||||||||||
Sbjct: 35110381 tgtgttgaataaacctgtagccaga 35110357
Score = 159 bits (80), Expect = 2e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 365 aggtctggagggagagcgacctgcacgattcacacgaggggaagctgacagagacaccta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35113028 aggtctggagggagagcgacctgcacgattcacacgaggggaagctgacagagacaccta 35112969
Query: 425 cagacgaagcgctgtgcccc 444
||||||||||||||||||||
Sbjct: 35112968 cagacgaagcgctgtgcccc 35112949
Score = 111 bits (56), Expect = 5e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 445 ctggtgctgacaagaaagccgaggccggagctgggtcagcaacagagttccaattt 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111350 ctggtgctgacaagaaagccgaggccggagctgggtcagcaacagagttccaattt 35111295
Score = 75.8 bits (38), Expect = 3e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 7 cctttctagctccggccccgtacgcagtagccgccgcg 44
||||||||||||||||||||||||||||||||||||||
Sbjct: 35117411 cctttctagctccggccccgtacgcagtagccgccgcg 35117374
>Sscrofa_Chr12
|| Length = 63588571
Score = 137 bits (69), Expect = 8e-30
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 501 agaggcggctttggtcgtggacgtggtcagcctcctcagtaaagttggaagagattgttt 560
|||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||
Sbjct: 18537961 agaggcggctttggtcgtggacgtggtcagccacatcagttaagtcggaagagattgttt 18538020
Query: 561 tgtgttgaataaacctgtagccaga 585
|||||||||||||||||||||||||
Sbjct: 18538021 tgtgttgaataaacctgtagccaga 18538045
>Sscrofa_Chr13
|| Length = 218635234
Score = 107 bits (54), Expect = 7e-21
Identities = 246/306 (80%), Gaps = 8/306 (2%)
Strand = Plus / Minus
Query: 138 caccccgagctggcggacaagaatgtgcctaatcttcacgtcatgaaggccatgcagtca 197
||||||||||||||||||||||||||||| | |||||| |||| |||| ||||||||||
Sbjct: 131845425 caccccgagctggcggacaagaatgtgcccagtcttcatgtcacgaag-ccatgcagtct 131845367
Query: 198 ctcaagtcacgaggctacgtgaaggaacagtttgcttggagacatttctattggtacctt 257
| || ||| |||| || |||||| |||| ||| ||||||||||| ||| | |||
Sbjct: 131845366 caca--tcagcaggccacaggaaggatcagtctgccaagagacatttctcctgggatctt 131845309
Query: 258 accaacgagggtatccagtatctccgtgattacctccacctcccccctgagattgtgcct 317
|||||| || || || |||| || ||||||||||| |||| |||||||| |||||
Sbjct: 131845308 accaacaagagtggccggtatttctgtgattacctctaccttagccctgagaca-tgcct 131845250
Query: 318 gctaccctgcgccgcagccgtcctgagactggcaggccacggcccaaaggtctggaggga 377
|| ||||||| ||||| |||||||||||||| ||| || ||||||||| |||||
Sbjct: 131845249 gccaccctgcagggcagcggtcctgagactggc----cacatccgaaaggtctgaaggga 131845194
Query: 378 gagcgacctgcacgattcacacgaggggaagctgacagagacacctacagacgaagcgct 437
|| | ||||||| || ||||| ||||||||||||||||||| ||||||||| |||| ||
Sbjct: 131845193 gaaccacctgcaagactcacatgaggggaagctgacagagaagcctacagaccaagccct 131845134
Query: 438 gtgccc 443
|||||
Sbjct: 131845133 ttgccc 131845128
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,288,129
Number of extensions: 267
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 9
Length of query: 641
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 620
Effective length of database: 2,808,413,156
Effective search space: 1741216156720
Effective search space used: 1741216156720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)