Animal-Genome cDNA 20110601C-000589


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000589
         (641 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029888.1| 40S ribosomal protein S10 [Bos taurus].           307   4e-84

>ref|NP_001029888.1| 40S ribosomal protein S10 [Bos taurus].
          Length = 165

 Score =  307 bits (787), Expect = 4e-84
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 20,259,337
Number of extensions: 540530
Number of successful extensions: 2047
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2040
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 115
Effective length of database: 14,438,750
Effective search space: 1660456250
Effective search space used: 1660456250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000589
         (641 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532112.2| PREDICTED: similar to 40S ribosomal protein S10...   307   5e-84
Alignment   gi|XP_537583.2| PREDICTED: similar to 40S ribosomal protein S10...   306   1e-83
Alignment   gi|XP_535122.1| PREDICTED: similar to 40S ribosomal protein S10...   302   1e-82
Alignment   gi|XP_539204.2| PREDICTED: similar to plectin 1 isoform 1 isofo...   128   5e-30
Alignment   gi|XP_857253.1| PREDICTED: similar to plectin 1 isoform 1 isofo...   128   5e-30

>ref|XP_532112.2| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris].
          Length = 440

 Score =  307 bits (787), Expect = 5e-84
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 150 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 209

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 210 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 269

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 270 EADRDTYRRSAVPPGADKKAEAGAGSATE 298


>ref|XP_537583.2| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris].
          Length = 244

 Score =  306 bits (783), Expect = 1e-83
 Identities = 147/149 (98%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKN+IAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 80  MLMPKKNQIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 139

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 140 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 199

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 200 EADRDTYRRSAVPPGADKKAEAGAGSATE 228


>ref|XP_535122.1| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris].
          Length = 165

 Score =  302 bits (774), Expect = 1e-82
 Identities = 147/149 (98%), Positives = 147/149 (98%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFY YLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61  QFAWRHFYCYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|XP_539204.2| PREDICTED: similar to plectin 1 isoform 1 isoform 1 [Canis
           familiaris].
          Length = 4686

 Score =  128 bits (321), Expect = 5e-30
 Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
           MLMP+    A+YE+LF+EGVMVAKKD   P+  HP +    V NL VM+AM SL++RG V
Sbjct: 5   MLMPRDQLRAVYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRARGLV 61

Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR 338
           +E FAWRHFYWYLTNEGI +LR YLHLPPEIVPA+L+R R
Sbjct: 62  RETFAWRHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVR 101


>ref|XP_857253.1| PREDICTED: similar to plectin 1 isoform 1 isoform 6 [Canis
           familiaris].
          Length = 4691

 Score =  128 bits (321), Expect = 5e-30
 Identities = 65/100 (65%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
           MLMP+    A+YE+LF+EGVMVAKKD   P+  HP +    V NL VM+AM SL++RG V
Sbjct: 5   MLMPRDQLRAVYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRARGLV 61

Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSR 338
           +E FAWRHFYWYLTNEGI +LR YLHLPPEIVPA+L+R R
Sbjct: 62  RETFAWRHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVR 101


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 20,958,818
Number of extensions: 512072
Number of successful extensions: 2272
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2266
Number of HSP's successfully gapped: 5
Length of query: 213
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,607,576
Effective search space: 1794871240
Effective search space used: 1794871240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000589
         (641 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001189399.1| RPS10-NUDT3 protein [Homo sapiens].               307   4e-84
Alignment   gi|NP_001191020.1| 40S ribosomal protein S10 [Homo sapiens].         307   4e-84
Alignment   gi|NP_001190174.1| 40S ribosomal protein S10 [Homo sapiens].         307   4e-84
Alignment   gi|NP_001005.1| 40S ribosomal protein S10 [Homo sapiens].            307   4e-84
Alignment   gi|NP_958782.1| plectin isoform 1 [Homo sapiens].                    126   1e-29
Alignment   gi|XP_003119005.1| PREDICTED: hypothetical protein LOC100506255...   101   6e-22
Alignment   gi|XP_003403684.1| PREDICTED: hypothetical protein LOC100506255...    98   5e-21

>ref|NP_001189399.1| RPS10-NUDT3 protein [Homo sapiens].
          Length = 291

 Score =  307 bits (787), Expect = 4e-84
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|NP_001191020.1| 40S ribosomal protein S10 [Homo sapiens].
          Length = 165

 Score =  307 bits (787), Expect = 4e-84
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|NP_001190174.1| 40S ribosomal protein S10 [Homo sapiens].
          Length = 165

 Score =  307 bits (787), Expect = 4e-84
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|NP_001005.1| 40S ribosomal protein S10 [Homo sapiens].
          Length = 165

 Score =  307 bits (787), Expect = 4e-84
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPAR TRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|NP_958782.1| plectin isoform 1 [Homo sapiens].
          Length = 4684

 Score =  126 bits (317), Expect = 1e-29
 Identities = 73/141 (51%), Positives = 88/141 (62%), Gaps = 12/141 (8%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
           MLMP+    AIYE+LF+EGVMVAKKD   P+  HP +    V NL VM+AM SL++RG V
Sbjct: 5   MLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRARGLV 61

Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRP----------KG 368
           +E FAW HFYWYLTNEGI +LR YLHLPPEIVPA+L+R R       P          +G
Sbjct: 62  RETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQG 121

Query: 369 LEGERPARFTRGEADRDTYRR 431
             G  P R      ++  YRR
Sbjct: 122 PLGSPPKRGPLPTEEQRVYRR 142


>ref|XP_003119005.1| PREDICTED: hypothetical protein LOC100506255 [Homo sapiens].
          Length = 195

 Score =  101 bits (251), Expect = 6e-22
 Identities = 56/88 (63%), Positives = 66/88 (75%)
 Frame = -1

Query: 398 CESCRSLSLQTFGPWPASLRTAAAQGSRHNLRGEVEVITEILDTLVGKVPIEMSPSKLFL 219
           C SCRS++LQTF P PASL+TA A GSRH L+G++ VI EILD  VG+VP+EMSP KL L
Sbjct: 91  CGSCRSVTLQTFRPQPASLQTAVAWGSRHALQGQMVVIAEILDPHVGEVPVEMSPGKL-L 149

Query: 218 HVAS*LE*LHGLHDVKIRHILVRQLGVL 135
              S  E L GLHDVK+ HIL+ QL VL
Sbjct: 150 PATSGPERLPGLHDVKVGHILICQLRVL 177


>ref|XP_003403684.1| PREDICTED: hypothetical protein LOC100506255 [Homo sapiens].
          Length = 195

 Score = 98.2 bits (243), Expect = 5e-21
 Identities = 55/88 (62%), Positives = 65/88 (73%)
 Frame = -1

Query: 398 CESCRSLSLQTFGPWPASLRTAAAQGSRHNLRGEVEVITEILDTLVGKVPIEMSPSKLFL 219
           C SCRS++LQTF P PASL+TA A GSRH L+G++ VI EIL   VG+VP+EMSP KL L
Sbjct: 91  CGSCRSVTLQTFRPQPASLQTAVAWGSRHALQGQMVVIAEILAPHVGEVPVEMSPGKL-L 149

Query: 218 HVAS*LE*LHGLHDVKIRHILVRQLGVL 135
              S  E L GLHDVK+ HIL+ QL VL
Sbjct: 150 PATSGPERLPGLHDVKVGHILICQLRVL 177


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 20,516,614
Number of extensions: 496104
Number of successful extensions: 1969
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1960
Number of HSP's successfully gapped: 7
Length of query: 213
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 115
Effective length of database: 15,066,692
Effective search space: 1732669580
Effective search space used: 1732669580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000589
         (641 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080239.1| 40S ribosomal protein S10 [Mus musculus].            307   5e-84
Alignment   gi|NP_958791.2| plectin isoform 1 [Mus musculus].                    126   2e-29
Alignment   gi|NP_001157012.1| plectin isoform 12alpha [Mus musculus].           126   2e-29

>ref|NP_080239.1| 40S ribosomal protein S10 [Mus musculus].
          Length = 165

 Score =  307 bits (786), Expect = 5e-84
 Identities = 148/149 (99%), Positives = 148/149 (99%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKG EGERPARFTRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|NP_958791.2| plectin isoform 1 [Mus musculus].
          Length = 4686

 Score =  126 bits (316), Expect = 2e-29
 Identities = 80/159 (50%), Positives = 92/159 (57%), Gaps = 23/159 (14%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
           MLMP     AIYE+LF+EGVMVAKKD   P+  HP +    V NL VM+AM SLK+RG V
Sbjct: 5   MLMPLDRLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLKARGLV 61

Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET----------------- 347
           +E FAW HFYWYLTNEGI +LR YLHLPPEIVPA+L+R R                    
Sbjct: 62  RETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSPHVQTMQ 121

Query: 348 ---GRPRPKG-LEGERPARFTRGEADRDTYRRSAVPPGA 452
              G P  +G L  E PAR      +R  YRR     GA
Sbjct: 122 GPLGCPPKRGPLPAEDPAR-----EERQVYRRKEREEGA 155


>ref|NP_001157012.1| plectin isoform 12alpha [Mus musculus].
          Length = 4691

 Score =  126 bits (316), Expect = 2e-29
 Identities = 80/159 (50%), Positives = 92/159 (57%), Gaps = 23/159 (14%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKSRGYV 218
           MLMP     AIYE+LF+EGVMVAKKD   P+  HP +    V NL VM+AM SLK+RG V
Sbjct: 5   MLMPLDRLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLKARGLV 61

Query: 219 KEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPET----------------- 347
           +E FAW HFYWYLTNEGI +LR YLHLPPEIVPA+L+R R                    
Sbjct: 62  RETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSPHVQTMQ 121

Query: 348 ---GRPRPKG-LEGERPARFTRGEADRDTYRRSAVPPGA 452
              G P  +G L  E PAR      +R  YRR     GA
Sbjct: 122 GPLGCPPKRGPLPAEDPAR-----EERQVYRRKEREEGA 155


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 17,431,585
Number of extensions: 419162
Number of successful extensions: 1519
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1514
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 116
Effective length of database: 12,704,067
Effective search space: 1473671772
Effective search space used: 1473671772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000589
         (641 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356659.1| PREDICTED: 40S ribosomal protein S10 [Sus sc...   310   5e-85
Alignment   gi|XP_003128396.1| PREDICTED: 40S ribosomal protein S10 isoform...   310   5e-85
Alignment   gi|XP_001928564.1| PREDICTED: 40S ribosomal protein S10 isoform...   310   5e-85

>ref|XP_003356659.1| PREDICTED: 40S ribosomal protein S10 [Sus scrofa].
          Length = 165

 Score =  310 bits (793), Expect = 5e-85
 Identities = 149/149 (100%), Positives = 149/149 (100%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|XP_003128396.1| PREDICTED: 40S ribosomal protein S10 isoform 2 [Sus scrofa].
          Length = 165

 Score =  310 bits (793), Expect = 5e-85
 Identities = 149/149 (100%), Positives = 149/149 (100%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


>ref|XP_001928564.1| PREDICTED: 40S ribosomal protein S10 isoform 1 [Sus scrofa].
          Length = 165

 Score =  310 bits (793), Expect = 5e-85
 Identities = 149/149 (100%), Positives = 149/149 (100%)
 Frame = +3

Query: 45  MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 224
           MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
Sbjct: 1   MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60

Query: 225 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 404
           QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG
Sbjct: 61  QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARFTRG 120

Query: 405 EADRDTYRRSAVPPGADKKAEAGAGSATE 491
           EADRDTYRRSAVPPGADKKAEAGAGSATE
Sbjct: 121 EADRDTYRRSAVPPGADKKAEAGAGSATE 149


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,499,925
Number of extensions: 417607
Number of successful extensions: 1350
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 3
Length of query: 213
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 118
Effective length of database: 8,978,717
Effective search space: 1059488606
Effective search space used: 1059488606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000589
         (641 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         351   3e-94
Sscrofa_Chr12                                                         137   8e-30
Sscrofa_Chr13                                                         107   7e-21

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  351 bits (177), Expect = 3e-94
 Identities = 177/177 (100%)
 Strand = Plus / Minus

                                                                            
Query: 192      cagtcactcaagtcacgaggctacgtgaaggaacagtttgcttggagacatttctattgg 251
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35115965 cagtcactcaagtcacgaggctacgtgaaggaacagtttgcttggagacatttctattgg 35115906

                                                                            
Query: 252      taccttaccaacgagggtatccagtatctccgtgattacctccacctcccccctgagatt 311
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35115905 taccttaccaacgagggtatccagtatctccgtgattacctccacctcccccctgagatt 35115846

                                                                         
Query: 312      gtgcctgctaccctgcgccgcagccgtcctgagactggcaggccacggcccaaaggt 368
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35115845 gtgcctgctaccctgcgccgcagccgtcctgagactggcaggccacggcccaaaggt 35115789



 Score =  299 bits (151), Expect = 1e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                            
Query: 44       gatgctgatgcccaagaagaaccggattgccatttatgaactccttttcaaggagggagt 103
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35116327 gatgctgatgcccaagaagaaccggattgccatttatgaactccttttcaaggagggagt 35116268

                                                                            
Query: 104      gatggtggccaaaaaagacgtgcacatgccgaagcaccccgagctggcggacaagaatgt 163
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35116267 gatggtggccaaaaaagacgtgcacatgccgaagcaccccgagctggcggacaagaatgt 35116208

                                               
Query: 164      gcctaatcttcacgtcatgaaggccatgcag 194
                |||||||||||||||||||||||||||||||
Sbjct: 35116207 gcctaatcttcacgtcatgaaggccatgcag 35116177



 Score =  168 bits (85), Expect = 2e-39
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                            
Query: 501      agaggcggctttggtcgtggacgtggtcagcctcctcagtaaagttggaagagattgttt 560
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35110441 agaggcggctttggtcgtggacgtggtcagcctcctcagtaaagttggaagagattgttt 35110382

                                         
Query: 561      tgtgttgaataaacctgtagccaga 585
                |||||||||||||||||||||||||
Sbjct: 35110381 tgtgttgaataaacctgtagccaga 35110357



 Score =  159 bits (80), Expect = 2e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                            
Query: 365      aggtctggagggagagcgacctgcacgattcacacgaggggaagctgacagagacaccta 424
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35113028 aggtctggagggagagcgacctgcacgattcacacgaggggaagctgacagagacaccta 35112969

                                    
Query: 425      cagacgaagcgctgtgcccc 444
                ||||||||||||||||||||
Sbjct: 35112968 cagacgaagcgctgtgcccc 35112949



 Score =  111 bits (56), Expect = 5e-22
 Identities = 56/56 (100%)
 Strand = Plus / Minus

                                                                        
Query: 445      ctggtgctgacaagaaagccgaggccggagctgggtcagcaacagagttccaattt 500
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111350 ctggtgctgacaagaaagccgaggccggagctgggtcagcaacagagttccaattt 35111295



 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                      
Query: 7        cctttctagctccggccccgtacgcagtagccgccgcg 44
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 35117411 cctttctagctccggccccgtacgcagtagccgccgcg 35117374


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  137 bits (69), Expect = 8e-30
 Identities = 81/85 (95%)
 Strand = Plus / Plus

                                                                            
Query: 501      agaggcggctttggtcgtggacgtggtcagcctcctcagtaaagttggaagagattgttt 560
                |||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||
Sbjct: 18537961 agaggcggctttggtcgtggacgtggtcagccacatcagttaagtcggaagagattgttt 18538020

                                         
Query: 561      tgtgttgaataaacctgtagccaga 585
                |||||||||||||||||||||||||
Sbjct: 18538021 tgtgttgaataaacctgtagccaga 18538045


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  107 bits (54), Expect = 7e-21
 Identities = 246/306 (80%), Gaps = 8/306 (2%)
 Strand = Plus / Minus

                                                                             
Query: 138       caccccgagctggcggacaagaatgtgcctaatcttcacgtcatgaaggccatgcagtca 197
                 ||||||||||||||||||||||||||||| | |||||| |||| |||| |||||||||| 
Sbjct: 131845425 caccccgagctggcggacaagaatgtgcccagtcttcatgtcacgaag-ccatgcagtct 131845367

                                                                             
Query: 198       ctcaagtcacgaggctacgtgaaggaacagtttgcttggagacatttctattggtacctt 257
                 | ||  |||  |||| ||  |||||| |||| |||   |||||||||||  ||| | |||
Sbjct: 131845366 caca--tcagcaggccacaggaaggatcagtctgccaagagacatttctcctgggatctt 131845309

                                                                             
Query: 258       accaacgagggtatccagtatctccgtgattacctccacctcccccctgagattgtgcct 317
                 |||||| || ||  || |||| || ||||||||||| ||||   ||||||||   |||||
Sbjct: 131845308 accaacaagagtggccggtatttctgtgattacctctaccttagccctgagaca-tgcct 131845250

                                                                             
Query: 318       gctaccctgcgccgcagccgtcctgagactggcaggccacggcccaaaggtctggaggga 377
                 || |||||||   ||||| ||||||||||||||    |||  || ||||||||| |||||
Sbjct: 131845249 gccaccctgcagggcagcggtcctgagactggc----cacatccgaaaggtctgaaggga 131845194

                                                                             
Query: 378       gagcgacctgcacgattcacacgaggggaagctgacagagacacctacagacgaagcgct 437
                 || | ||||||| || ||||| |||||||||||||||||||  ||||||||| |||| ||
Sbjct: 131845193 gaaccacctgcaagactcacatgaggggaagctgacagagaagcctacagaccaagccct 131845134

                       
Query: 438       gtgccc 443
                  |||||
Sbjct: 131845133 ttgccc 131845128


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,288,129
Number of extensions: 267
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 9
Length of query: 641
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 620
Effective length of database: 2,808,413,156
Effective search space: 1741216156720
Effective search space used: 1741216156720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)