Animal-Genome cDNA 20110601C-000601


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000601
         (1525 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru...   501   e-142
Alignment   gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru...   501   e-142
Alignment   gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].      495   e-140
Alignment   gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru...   494   e-140
Alignment   gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ...   494   e-139
Alignment   gi|NP_001035644.1| major histocompatibility complex, class I, A...   493   e-139
Alignment   gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].                   493   e-139
Alignment   gi|NP_001108327.1| major histocompatibility complex, class I, A...   492   e-139
Alignment   gi|NP_001180225.1| MHC class I heavy chain [Bos taurus].             484   e-137
Alignment   gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp...   476   e-134

>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
          Length = 358

 Score =  501 bits (1291), Expect = e-142
 Identities = 251/356 (70%), Positives = 269/356 (75%)
 Frame = +3

Query: 57   MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
            MGPR                   HSLRYF TAVSRP  G+PRFI VGYVDDTQF  FDSD
Sbjct: 1    MGPRTLLLLLSGVLVLTETLAGSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSD 60

Query: 237  APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
            APNPR EPR PW+E+EG EYWDR T+I KD AQT+RV LN LRGYYNQSEAGSHTLQ M 
Sbjct: 61   APNPREEPRVPWMEQEGLEYWDRNTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMS 120

Query: 417  GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
            GCDVGPDG  LRG+ QF YDG +YIALNEDLRSWTAADTAAQITKRK EAA AAE  R+Y
Sbjct: 121  GCDVGPDGRLLRGFWQFGYDGRNYIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNY 180

Query: 597  LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
            +EG CVEGL++YLE GKD L RA+PPK HVT HP S+  VTLRCWALGFYP+EISLTWQR
Sbjct: 181  VEGRCVEGLRRYLENGKDALLRADPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQR 240

Query: 777  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
            EG+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+PPQ 
Sbjct: 241  EGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQ- 299

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
                                      WRKKRSGEKG  YTQAA SDS QGSD+SLT
Sbjct: 300  -TSFLTMGIIVGLVLLVVAVVAGAVIWRKKRSGEKGRIYTQAASSDSTQGSDMSLT 354


>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
          Length = 361

 Score =  501 bits (1290), Expect = e-142
 Identities = 252/359 (70%), Positives = 271/359 (75%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            +R+M PR                   HSLRYF T VSRP  G+PRFI VGYVDDTQFV F
Sbjct: 1    MRVMRPRTLLLLLSGVLVLTETLAGSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDA +PR EPR PW+E+EG EYWDRET+  KD AQT+RVNLN L GYYNQSEAGSHTLQ
Sbjct: 61   DSDAADPRTEPRVPWMEQEGPEYWDRETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             MYGCDV PDG FLRGY Q AYDG DYIALN+DLRSWTAADTAAQITKRK EAA  AE+ 
Sbjct: 121  WMYGCDVEPDGRFLRGYRQDAYDGRDYIALNQDLRSWTAADTAAQITKRKWEAAGEAERR 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R+YLEG CVE L++YLE GKDTL RA+PPK HVTRHPSSD  VTLRCWALGFYP+EISLT
Sbjct: 181  RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPSSDREVTLRCWALGFYPEEISLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
            WQ  G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P
Sbjct: 241  WQHNGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEP 300

Query: 948  PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
            PQ                           WRKK SGEKG  YTQAA SDSAQGSDVSLT
Sbjct: 301  PQ--TSFLTMGIIVGLVVLVVAVVAGAVIWRKKHSGEKGRIYTQAASSDSAQGSDVSLT 357


>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
          Length = 361

 Score =  495 bits (1274), Expect = e-140
 Identities = 244/359 (67%), Positives = 269/359 (74%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            +R+MGPR                   HS+RYF TAVSRP  G+P+++EVGYVDDTQFV F
Sbjct: 1    MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDAPNPRMEPRA W+++EG EYWD ETQ +K   Q +RVNLN LRGYYNQSEAGSHTLQ
Sbjct: 61   DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             M GCDVGPDG   RG+ QF YDG DY+ALNEDLRSWTAADT AQI+KRK EAA AAE  
Sbjct: 121  WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R Y+EG CVE L++YLE GKDTL RA+PPK HVT HP SD  VTLRCWALGFYPKEISLT
Sbjct: 181  RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
            WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241  WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300

Query: 948  PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
            PQ                           WRKK SGEKG +YTQA+ +DSAQGSDVSLT
Sbjct: 301  PQ--TPFLTVGIIVGLVLLVVAVVAGAVIWRKKCSGEKGRTYTQASSNDSAQGSDVSLT 357


>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
          Length = 363

 Score =  494 bits (1273), Expect = e-140
 Identities = 243/359 (67%), Positives = 270/359 (75%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            +R+MGPR                   HSLRYF TAVSRP  G+PRFI VGYVDDTQFV F
Sbjct: 1    MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDAPNPRMEPRA W+E+EG EYWDRET+ SKD AQ +RV+LN LRGYYNQSEAGSHTLQ
Sbjct: 61   DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             MYGC VGPDG   RG++Q+ YDG DY+ALNEDLRSWTA +T AQI+KRK EAA  AE+ 
Sbjct: 121  LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R+YLEG CVE L++YLE GKDTL RA+PPK HVTRHP S   VTLRCWALGFYP+EISLT
Sbjct: 181  RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
            WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241  WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300

Query: 948  PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
            PQ                             KKRSGEK G+Y QA+ SDSAQGSDVSLT
Sbjct: 301  PQPSFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQASSSDSAQGSDVSLT 359


>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
          Length = 398

 Score =  494 bits (1271), Expect = e-139
 Identities = 243/343 (70%), Positives = 269/343 (78%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRYF TAVSRP  G+PRFI VGYVDDT+FV FDSDAP+PRMEPRA W+E+EG EYWD+
Sbjct: 52   HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ET+ +KD AQT+R NLN+LRGYYNQSEAGSHTLQ MYGCDVGPDG  LRGY Q+ YDG D
Sbjct: 112  ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDLRSWTAADTAAQI+KRK EAA  A ++R YL G CVE L++YLE GK+TL RA
Sbjct: 172  YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HVT HP S   VTLRCWALGFYP+EI LTWQ  G+DQ+QDMELVETRP GDG FQ
Sbjct: 232  DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+PPQ                        
Sbjct: 292  KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ--TPFLTMGIIVGLVLLVVAVVAG 349

Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV*DSCL 1154
               WRKKRSGEKG +YTQA+ SDSAQGSDVSLT  P+    C+
Sbjct: 350  AVIWRKKRSGEKGRTYTQASSSDSAQGSDVSLTV-PKAASECI 391


>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 362

 Score =  493 bits (1270), Expect = e-139
 Identities = 245/358 (68%), Positives = 267/358 (74%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            +R++GPR                   HSLRYF TAVSRP  G+PRFI VGYVDDTQFV F
Sbjct: 1    MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDAP+PR+EP A W+E+EG EYW +ETQ +KD AQ +RV LN LRGYYNQSEAGSHT+Q
Sbjct: 61   DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             MYGCDVGPDGL LRGY QFAYDG DYIALNEDLRSWTAADTAAQ+TK   EAA  A ++
Sbjct: 121  EMYGCDVGPDGL-LRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R YLEG CVE L++YL  GKDTL RA+PPKTHV  HP SD  VTLRCWALGFYP EISLT
Sbjct: 180  RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
            WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240  WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299

Query: 948  PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
            PQ                           WRKK SGEKG  YTQ A S S QGSDVSL
Sbjct: 300  PQPSIPIMGIIVGLVLLMVTGAVVTGAMIWRKKHSGEKGRGYTQTASSYSDQGSDVSL 357


>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
          Length = 359

 Score =  493 bits (1270), Expect = e-139
 Identities = 246/356 (69%), Positives = 270/356 (75%)
 Frame = +3

Query: 57   MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
            MGPR                   HSLRYF TAVSRP  G+PRFI VGYVDDTQFV FDSD
Sbjct: 1    MGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSD 60

Query: 237  APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
            A +PR+EPRA W+E+EG EYWD+ET+ +KD+AQ +R+ LN LRGYYNQSEAGSHTLQ MY
Sbjct: 61   AGDPRVEPRARWVEQEGPEYWDQETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMY 120

Query: 417  GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
            GCDVGPDG  LRG+ QF Y+G DYIALNEDLRSWTAADTAAQI+KRK EAAD AE+ R+Y
Sbjct: 121  GCDVGPDGRLLRGFWQFGYEGRDYIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNY 180

Query: 597  LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
            LEG CVE L +YLE GKDTL RA+PPK HVT HP S   VTLRCWALGFYP+EISLTWQR
Sbjct: 181  LEGTCVEWLPRYLENGKDTLLRADPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQR 240

Query: 777  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
             G+DQ+QDMELVETRPSGDGTFQKW ALVVP GEEQ YTC VQHEGLQEPLTLRW+PPQ 
Sbjct: 241  NGEDQTQDMELVETRPSGDGTFQKWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ- 299

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
                                      W KKRSGEKGG+Y QA+ SDSAQGSDVSLT
Sbjct: 300  TSFLTMGIIVGLVLLVTGAVVAGFVIWMKKRSGEKGGNYIQASRSDSAQGSDVSLT 355


>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 363

 Score =  492 bits (1267), Expect = e-139
 Identities = 241/333 (72%), Positives = 263/333 (78%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRYF TAVSRP  G+PRFI VGYVDDTQFV FDSDAP+PR+EP A W+E+EG EYW +
Sbjct: 28   HSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQEGPEYWHQ 87

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ETQ +KD AQ +RV LN LRGYYNQSEAGSHT+Q MYGCDVGPDGL LRGY QFAYDG D
Sbjct: 88   ETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGL-LRGYDQFAYDGRD 146

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDLRSWTAADTAAQ+TK   EAA  A ++R YLEG CVE L++YL  GKDTL RA
Sbjct: 147  YIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTGKDTLLRA 206

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPKTHV  HP SD  VTLRCWALGFYP+EISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207  DPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 266

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+PPQ                        
Sbjct: 267  KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIPIMGIIVGLVHLMVTGAMVTG 326

Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
               WRKK SGEKG  Y+QA+ SDS QGSDV LT
Sbjct: 327  AVIWRKKHSGEKGRIYSQASSSDSDQGSDVPLT 359


>ref|NP_001180225.1| MHC class I heavy chain [Bos taurus].
          Length = 359

 Score =  484 bits (1247), Expect = e-137
 Identities = 240/356 (67%), Positives = 265/356 (74%)
 Frame = +3

Query: 57   MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
            MGPR                   HS+RYF TAVSRP  G+PR++EVGYVDDTQFV FDSD
Sbjct: 1    MGPRTLLLLLSGVLVLTETRAGSHSMRYFSTAVSRPGLGEPRYLEVGYVDDTQFVRFDSD 60

Query: 237  APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
            APNPR+EP A W+E+EG EYW +ETQ +KD AQ +RV LN LRGYYNQSEAGSHT+Q MY
Sbjct: 61   APNPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMY 120

Query: 417  GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
            GCDVGPDGL LRGY QFAYDG DYIALNEDLRSWTAADTAAQ+TK   EAA  A ++R Y
Sbjct: 121  GCDVGPDGL-LRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIY 179

Query: 597  LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
            LEG CVE L++YLE GKDTL RA+PPK HVT H  S   VTLRCWALGFYP++ISLTWQR
Sbjct: 180  LEGTCVEWLRRYLETGKDTLLRADPPKAHVTHHSISGHEVTLRCWALGFYPEDISLTWQR 239

Query: 777  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
             G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTL+W+PPQ 
Sbjct: 240  NGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQP 299

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
                                        KKRSGEK G+Y QA+ SDSAQGSDVSLT
Sbjct: 300  SFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQASSSDSAQGSDVSLT 355


>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
            [Bos taurus].
          Length = 360

 Score =  476 bits (1224), Expect = e-134
 Identities = 235/356 (66%), Positives = 261/356 (73%)
 Frame = +3

Query: 57   MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
            MGPR                   HS+RYF TAVSRP  G+PR++EVGYVDDTQFV FDSD
Sbjct: 1    MGPRTLLLLLSGVLVLTETRAGSHSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSD 60

Query: 237  APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
            A NPRMEPR  W+++EG EYWDR T+ +K NAQ++RV LN LRGYYNQSEAGSHTLQ M 
Sbjct: 61   ARNPRMEPRTRWVKQEGPEYWDRNTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMS 120

Query: 417  GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
            GC VGPDG  LRG+ Q+ YDG DY+ALNEDLRSWTAADT AQITKRK EA   AE  R+Y
Sbjct: 121  GCYVGPDGRLLRGFMQYGYDGRDYLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNY 180

Query: 597  LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
            LEG CVE L++++E GKDTL RA+PPK HVT HP SD  VTLRCWALGFYP+EISLTWQ 
Sbjct: 181  LEGECVEWLRRHMENGKDTLLRADPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQH 240

Query: 777  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
             G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTL+W+PPQ 
Sbjct: 241  NGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQP 300

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
                                        KK SGEK G+Y QA  SDSAQGSDVSLT
Sbjct: 301  SFLTMGIIVGLVLLVVTGAVVAGVVICMKKPSGEKRGTYIQALSSDSAQGSDVSLT 356


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,751,973
Number of extensions: 1902148
Number of successful extensions: 12006
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 11740
Number of HSP's successfully gapped: 70
Length of query: 508
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 401
Effective length of database: 14,140,958
Effective search space: 5670524158
Effective search space used: 5670524158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000601
         (1525 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].      472   e-133
Alignment   gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].      465   e-131
Alignment   gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].      442   e-124
Alignment   gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].          381   e-106
Alignment   gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris].            381   e-106
Alignment   gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein...   197   3e-50
Alignment   gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s...   138   2e-32
Alignment   gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote...    71   3e-12
Alignment   gi|XP_860822.1| PREDICTED: similar to T-cell surface glycoprote...    71   3e-12
Alignment   gi|NP_001122309.1| T-cell surface glycoprotein CD1a [Canis lupu...    69   1e-11

>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
          Length = 361

 Score =  472 bits (1215), Expect = e-133
 Identities = 235/338 (69%), Positives = 262/338 (77%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRYF T+VSRP RG PRFI VGYVDDTQFV FDSDA   RMEPRAPW+E+EG EYWDR
Sbjct: 27   HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDR 86

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ET+  K+ AQ YRV+L+ LRGYYNQSEAGSHT Q+MYGCD+GP G  LRGYSQ AYDGAD
Sbjct: 87   ETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGAD 146

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDLRSWTAADTAAQIT+RK EAA  AE  R+YLE  CVE L++YLEMGK+TL RA
Sbjct: 147  YIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRA 206

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            EPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207  EPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P                          
Sbjct: 267  KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEP--SPLSTIVIVSIAALVLLVVSGVIG 324

Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
               WRK+RSG KG  Y+ AA  DSAQGSDVSLT  PRV
Sbjct: 325  AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361


>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
          Length = 358

 Score =  465 bits (1197), Expect = e-131
 Identities = 230/338 (68%), Positives = 261/338 (77%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRYF T+VSRP RG PRFI VGYVDDTQFV FDSDA   RMEPRAPW+E+EG EYWD 
Sbjct: 24   HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYWDP 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            +T+  K+ A+T+RV+L+ LRGYYNQSEAGSHT Q M+GCD+GP G  LRGYSQ AYDGAD
Sbjct: 84   QTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDGAD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDLRSWTAAD AAQIT+RKREAA  A  +R+YLE  CVE L++YLEMGK+TL RA
Sbjct: 144  YIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLLRA 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            EPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 204  EPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P                          
Sbjct: 264  KWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEP--SPLSTIVIVSIAALVLLVVAGVIG 321

Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
               WRK+RSG KG  Y+ AA  DSAQGSDVSLT  PRV
Sbjct: 322  AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 358


>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
          Length = 361

 Score =  442 bits (1138), Expect = e-124
 Identities = 217/338 (64%), Positives = 255/338 (75%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLR+F TAVSRP RG P +I VGYVDDTQF+ F+SDA +P++EPRA W+E+EG E+W+ 
Sbjct: 27   HSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEE 86

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            +T+I+K +AQT R NL    GYYNQSEAGSHT Q   GCDVGPDG  LRGY QFAYDGAD
Sbjct: 87   QTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGAD 146

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            Y+AL+EDLRSWTAAD AAQIT+RK EAA AA+  R YL+G CV+ L KYLE GK+TLQ  
Sbjct: 147  YLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLT 206

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK ++TRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207  DPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P                          
Sbjct: 267  KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEP--SPLSTIVIVSIAALVLLVVAGVIG 324

Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
               WRK+RSG KG  Y+ AA  DSAQGSDVSLT  PRV
Sbjct: 325  AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361


>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
          Length = 381

 Score =  381 bits (979), Expect = e-106
 Identities = 193/350 (55%), Positives = 235/350 (67%), Gaps = 5/350 (1%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLR+ +T VSRP  G+PR   V YVDDT F  F+S+    R EP   W+E+EG EYW+ 
Sbjct: 32   HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91

Query: 306  ETQISKDNAQTYRVNLNNL-RGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
             T  S+   Q  R  LN + + Y NQS  GSHT Q++ GCDVGPDG FLRGY + AYDG 
Sbjct: 92   RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151

Query: 483  DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
            DYI L+EDLRSW   D  AQIT+RK +AA  AE  +++LEG C+E L+++LE G++TLQR
Sbjct: 152  DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211

Query: 663  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            A+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212  ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271

Query: 843  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXXX 1019
            QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ PPQ                      
Sbjct: 272  QKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331

Query: 1020 XXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTQDPRV*DSCLVG 1160
                 WRKK SG KGGSY+QA    G  SAQ S +S+   P    SCLVG
Sbjct: 332  VGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSV-MAPNEQASCLVG 380


>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
          Length = 381

 Score =  381 bits (979), Expect = e-106
 Identities = 193/350 (55%), Positives = 235/350 (67%), Gaps = 5/350 (1%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLR+ +T VSRP  G+PR   V YVDDT F  F+S+    R EP   W+E+EG EYW+ 
Sbjct: 32   HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91

Query: 306  ETQISKDNAQTYRVNLNNL-RGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
             T  S+   Q  R  LN + + Y NQS  GSHT Q++ GCDVGPDG FLRGY + AYDG 
Sbjct: 92   RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151

Query: 483  DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
            DYI L+EDLRSW   D  AQIT+RK +AA  AE  +++LEG C+E L+++LE G++TLQR
Sbjct: 152  DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211

Query: 663  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            A+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212  ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271

Query: 843  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXXX 1019
            QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ PPQ                      
Sbjct: 272  QKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331

Query: 1020 XXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTQDPRV*DSCLVG 1160
                 WRKK SG KGGSY+QA    G  SAQ S +S+   P    SCLVG
Sbjct: 332  VGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSV-MAPNEQASCLVG 380


>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
           (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
           familiaris].
          Length = 315

 Score =  197 bits (500), Expect = 3e-50
 Identities = 107/283 (37%), Positives = 157/283 (55%), Gaps = 6/283 (2%)
 Frame = +3

Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
           P+SL +F T +SRP  G P F    Y++D  F  +DS+    +  PR PW + EG E W+
Sbjct: 27  PYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETG--KAIPRYPWSQMEGIEDWE 84

Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPD---GLFLRGYSQFAY 473
           +E+++ K     + V L ++  YY   E GSHT Q M+GC++  +   G F R    +AY
Sbjct: 85  KESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCELQNNKNSGAFWR----YAY 139

Query: 474 DGADYIALNEDLRSWTAADTAAQITKRKREAADA-AEQMRSYLEGACVEGLQKYLEMGKD 650
           DG ++I  N+++ +W   D AA  TK+K EA +   ++ ++YLE  C   LQ+YLE GK 
Sbjct: 140 DGRNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKT 199

Query: 651 TLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSG 830
            L R EPP   +T H + +   TL+CW  GFYP+EI L W  +  D  +        PSG
Sbjct: 200 YLDRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSG 258

Query: 831 DGTFQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPPQ 953
           + T+Q W  +   P +    SY+C V+H  L +PLT+ WD  Q
Sbjct: 259 NNTYQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301


>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
           (FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
           transporter, alpha chain) [Canis familiaris].
          Length = 354

 Score =  138 bits (347), Expect = 2e-32
 Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 2/276 (0%)
 Frame = +3

Query: 129 SLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWI-EKEGQEYWDR 305
           SL Y  TAVS P  G P F   G++   Q++ +++     + EP   W+ E +   YW++
Sbjct: 28  SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVSWYWEK 85

Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
           ET   +     +   L  L       + G +TLQ + GC++GPD   +   ++FA +G D
Sbjct: 86  ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138

Query: 486 YIALNEDLRSWTAADTAAQ-ITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
           ++  +  L +W       + ++KR  + A A  + R++L  +C + L  +LE G+  L+ 
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198

Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            EPP   +   P S     L C A  FYP E+ L + R G          +  P+GDG+F
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256

Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
             W++L V  G+E  Y C VQH GL +PLT+  + P
Sbjct: 257 HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTVELESP 292


>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
           (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
           thymocyte antigen) isoform 1 [Canis familiaris].
          Length = 357

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
 Frame = +3

Query: 402 LQSMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAA----DTAAQITKRKREAA 569
           +Q   GC++     F  G+ ++AY G D I       SW  +      A Q +    +  
Sbjct: 114 VQMEIGCELRIGEPF-SGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 170

Query: 570 DAAEQMRSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 746
           +  E     + G C   +   L++GK  LQR   P+  ++  PS   G + L C   GFY
Sbjct: 171 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 230

Query: 747 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 923
           PK + + W R G+ + Q  +  +  P  DGT+    +L V   E    +C V+H  L  +
Sbjct: 231 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 289

Query: 924 PLTLRWDPP 950
            + L W+ P
Sbjct: 290 DMVLHWEQP 298


>ref|XP_860822.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
           (CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
           thymocyte antigen) isoform 2 [Canis familiaris].
          Length = 352

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
 Frame = +3

Query: 402 LQSMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAA----DTAAQITKRKREAA 569
           +Q   GC++     F  G+ ++AY G D I       SW  +      A Q +    +  
Sbjct: 109 VQMEIGCELRIGEPF-SGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 165

Query: 570 DAAEQMRSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 746
           +  E     + G C   +   L++GK  LQR   P+  ++  PS   G + L C   GFY
Sbjct: 166 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 225

Query: 747 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 923
           PK + + W R G+ + Q  +  +  P  DGT+    +L V   E    +C V+H  L  +
Sbjct: 226 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 284

Query: 924 PLTLRWDPP 950
            + L W+ P
Sbjct: 285 DMVLHWEQP 293


>ref|NP_001122309.1| T-cell surface glycoprotein CD1a [Canis lupus familiaris].
          Length = 340

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
 Frame = +3

Query: 453 GYSQFAYDGADYIALNEDLRSWTAADT----AAQITKRKREAADAAEQMRSYLEGACVEG 620
           G+ Q AY G+D ++     +SW  +      A Q+ K   +      ++ S++   C   
Sbjct: 130 GFMQIAYQGSDLVSFQN--KSWWPSPKGGRRAQQVCKLLNQYHVVNLRIHSHINDFCPHY 187

Query: 621 LQKYLEMGKDTLQRAEPPKTHVTRHPS-SDLGVTLRCWALGFYPKEISLTWQREGQDQSQ 797
           L   L+ GK  L R   P+  ++  PS S   + L C   GFYPK + +TW R G+ + Q
Sbjct: 188 LLGLLDAGKGDLHRQVRPEAWLSAGPSPSSDHLQLVCHVSGFYPKPVWVTWMR-GEQEQQ 246

Query: 798 DMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QEPLTLRWDPP 950
                +  P  DGT+    +L V   E    +C V+H  L  + + L W+ P
Sbjct: 247 GSWRGDVLPHADGTWYLQVSLDVKAKEVAGLSCRVRHSSLGGQDMVLHWERP 298


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,660,591
Number of extensions: 1981293
Number of successful extensions: 12882
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 12534
Number of HSP's successfully gapped: 28
Length of query: 508
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 401
Effective length of database: 15,307,552
Effective search space: 6138328352
Effective search space used: 6138328352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000601
         (1525 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1...   484   e-137
Alignment   gi|NP_005505.2| major histocompatibility complex, class I, B pr...   482   e-136
Alignment   gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al...   481   e-136
Alignment   gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ...   478   e-135
Alignment   gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp...   476   e-134
Alignment   gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c...   456   e-128
Alignment   gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c...   436   e-122
Alignment   gi|NP_001091949.1| HLA class I histocompatibility antigen, alph...   427   e-119
Alignment   gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c...   426   e-119
Alignment   gi|NP_001091948.1| HLA class I histocompatibility antigen, alph...   259   5e-69

>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  484 bits (1247), Expect = e-137
 Identities = 242/361 (67%), Positives = 269/361 (74%), Gaps = 3/361 (0%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            +R+M PR                   HS+RYFDTAVSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1    MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDA +PR EPRAPW+E+EG EYWDRETQ  K  AQ  RV+L NLRGYYNQSE GSHTLQ
Sbjct: 61   DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             MYGCD+GPDG  LRGY Q AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA AAEQ+
Sbjct: 121  RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R+YLEG CVE L++YLE GK+TLQRAEPPKTHVT HP SD   TLRCWALGFYP EI+LT
Sbjct: 181  RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
            WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241  WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300

Query: 948  ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1118
               P                             R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301  SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360

Query: 1119 L 1121
            L
Sbjct: 361  L 361


>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
            sapiens].
          Length = 362

 Score =  482 bits (1240), Expect = e-136
 Identities = 242/359 (67%), Positives = 267/359 (74%), Gaps = 2/359 (0%)
 Frame = +3

Query: 54   IMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDS 233
            +M PR                   HS+RYF T+VSRP RG+PRFI VGYVDDTQFV FDS
Sbjct: 3    VMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDS 62

Query: 234  DAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSM 413
            DA +PR EPRAPWIE+EG EYWDR TQI K  AQT R +L NLRGYYNQSEAGSHTLQSM
Sbjct: 63   DAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSM 122

Query: 414  YGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRS 593
            YGCDVGPDG  LRG+ Q+AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA  AEQ R+
Sbjct: 123  YGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRA 182

Query: 594  YLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQ 773
            YLEG CVE L++YLE GKD L+RA+PPKTHVT HP SD   TLRCWALGFYP EI+LTWQ
Sbjct: 183  YLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQ 242

Query: 774  REGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-- 947
            R+G+DQ+QD ELVETRP+GD TFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P  
Sbjct: 243  RDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSS 302

Query: 948  PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
                                          R+K SG KGGSY+QAA SDSAQGSDVSLT
Sbjct: 303  QSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSLT 361


>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
            [Homo sapiens].
          Length = 366

 Score =  481 bits (1238), Expect = e-136
 Identities = 241/361 (66%), Positives = 268/361 (74%), Gaps = 3/361 (0%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            +R+M PR                   HS+RYFDTAVSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1    MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDA +PR EPRAPW+E+EG EYWDRETQ  K  AQ  RV+L NLRGYYNQSE GSHTLQ
Sbjct: 61   DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             M GCD+GPDG  LRGY Q AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA AAEQ+
Sbjct: 121  RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R+YLEG CVE L++YLE GK+TLQRAEPPKTHVT HP SD   TLRCWALGFYP EI+LT
Sbjct: 181  RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
            WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241  WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300

Query: 948  ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1118
               P                             R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301  SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360

Query: 1119 L 1121
            L
Sbjct: 361  L 361


>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  478 bits (1230), Expect = e-135
 Identities = 237/361 (65%), Positives = 265/361 (73%), Gaps = 2/361 (0%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            + +M PR                   HS+RYF T+VSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1    MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDA + +MEPRAPWIE+EG EYWD+ET+  K ++QT R NL  LRGYYNQSE GSHT+Q
Sbjct: 61   DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             MYGCDVGPDG FLRGY Q AYDG DYIALNEDLRSWTAAD AAQITKRK EA  AAEQ 
Sbjct: 121  IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R YLEG CV+GL++YLE GK+TLQR +PPKTH+T HP SD   TLRCWALGFYP EI+LT
Sbjct: 181  RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD- 944
            WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ 
Sbjct: 241  WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 300

Query: 945  -PPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
                                           WR+K S  KGGSYTQAA SDSAQGSDVSL
Sbjct: 301  SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 360

Query: 1122 T 1124
            T
Sbjct: 361  T 361


>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
            [Homo sapiens].
          Length = 365

 Score =  476 bits (1226), Expect = e-134
 Identities = 237/361 (65%), Positives = 266/361 (73%), Gaps = 2/361 (0%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            + +M PR                   HS+RYF T+VSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1    MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDA + RMEPRAPWIE+EG EYWD+ET+  K  +QT RV+L  LRGYYNQSEAGSHT+Q
Sbjct: 61   DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             MYGCDVG DG FLRGY Q AYDG DYIALNEDLRSWTAAD AAQITKRK EAA  AEQ+
Sbjct: 121  IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            R+YL+G CVE L++YLE GK+TLQR +PPKTH+T HP SD   TLRCWALGFYP EI+LT
Sbjct: 181  RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD- 944
            WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ 
Sbjct: 241  WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 300

Query: 945  -PPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
                                           WR+K S  KGGSYTQAA SDSAQGSDVSL
Sbjct: 301  SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 360

Query: 1122 T 1124
            T
Sbjct: 361  T 361


>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
            sapiens].
          Length = 358

 Score =  456 bits (1174), Expect = e-128
 Identities = 219/331 (66%), Positives = 250/331 (75%), Gaps = 2/331 (0%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSL+YF T+VSRP RG+PRFI VGYVDDTQFV FD+DA +PRM PRAPW+E+EG EYWDR
Sbjct: 24   HSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDR 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ET+ ++D AQ +RVNL  LRGYYNQSEAGSHTLQ M+GC++GPDG FLRGY QFAYDG D
Sbjct: 84   ETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            Y+ LNEDLRSWTA DTAAQI+++K   A  AE  R+YLE  CVE L KYLE GK+TL   
Sbjct: 144  YLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHL 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            EPPKTHVT HP SD   TLRCWALGFYP EI+LTWQ++G+  +QD ELVETRP+GDGTFQ
Sbjct: 204  EPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ--XXXXXXXXXXXXXXXXXXXXXX 1019
            KWAA+VVP GEEQ YTCHVQHEGL EP+TLRW P                          
Sbjct: 264  KWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAV 323

Query: 1020 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSD 1112
                 WRKK SG KGGSY++A  SDSAQGS+
Sbjct: 324  VAAVIWRKKSSGGKGGSYSKAEWSDSAQGSE 354


>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
           [Homo sapiens].
          Length = 338

 Score =  436 bits (1122), Expect = e-122
 Identities = 207/296 (69%), Positives = 234/296 (79%)
 Frame = +3

Query: 54  IMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDS 233
           +M PR                   HS+RYF  AVSRP RG+PRFI +GYVDDTQFV FDS
Sbjct: 3   VMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDS 62

Query: 234 DAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSM 413
           D+  PRMEPRAPW+E+EG EYW+ ET+ +K +AQT R+NL  LRGYYNQSEA SHTLQ M
Sbjct: 63  DSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWM 122

Query: 414 YGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRS 593
            GCD+G DG  LRGY Q+AYDG DY+ALNEDLRSWTAADTAAQI+KRK EAA+ AEQ R+
Sbjct: 123 IGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRA 182

Query: 594 YLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQ 773
           YLEG CVE L +YLE GK+ LQRA+PPKTHVT HP  D   TLRCWALGFYP EI LTWQ
Sbjct: 183 YLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQ 242

Query: 774 REGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 941
           R+G+DQ+QD+ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 243 RDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298


>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
            precursor [Homo sapiens].
          Length = 442

 Score =  427 bits (1099), Expect = e-119
 Identities = 210/330 (63%), Positives = 240/330 (72%), Gaps = 2/330 (0%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRYF TAVSRP RG+PR+I V YVDDTQF+ FDSDA  PRMEPR PW+E+EG +YW+ 
Sbjct: 24   HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
             T  +K NAQT RV L NL   YNQSEAGSHTLQ M GCD+GPDG  LRGY Q AYDG D
Sbjct: 84   TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YI+LNEDLRSWTAADT AQIT+R  EA + AE+ R+YLEG C+E L++YLE GK+TLQRA
Sbjct: 144  YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 1019
            KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+  P                        
Sbjct: 264  KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323

Query: 1020 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1109
                 WRKK S    GSY+QAA      G+
Sbjct: 324  VAAVMWRKKSSDRNRGSYSQAAAYSVVSGN 353


>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
            precursor [Homo sapiens].
          Length = 346

 Score =  426 bits (1096), Expect = e-119
 Identities = 209/322 (64%), Positives = 238/322 (73%), Gaps = 2/322 (0%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRYF TAVSRP RG+PR+I V YVDDTQF+ FDSDA  PRMEPR PW+E+EG +YW+ 
Sbjct: 24   HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
             T  +K NAQT RV L NL   YNQSEAGSHTLQ M GCD+GPDG  LRGY Q AYDG D
Sbjct: 84   TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YI+LNEDLRSWTAADT AQIT+R  EA + AE+ R+YLEG C+E L++YLE GK+TLQRA
Sbjct: 144  YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 1019
            KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+  P                        
Sbjct: 264  KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323

Query: 1020 XXXXXWRKKRSGEKGGSYTQAA 1085
                 WRKK S    GSY+QAA
Sbjct: 324  VAAVMWRKKSSDRNRGSYSQAA 345


>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
           precursor [Homo sapiens].
          Length = 254

 Score =  259 bits (662), Expect = 5e-69
 Identities = 127/181 (70%), Positives = 145/181 (80%)
 Frame = +3

Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
           HSLRYF TAVSRP RG+PR+I V YVDDTQF+ FDSDA  PRMEPR PW+E+EG +YW+ 
Sbjct: 24  HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            T  +K NAQT RV L NL   YNQSEAGSHTLQ M GCD+GPDG  LRGY Q AYDG D
Sbjct: 84  TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
           YI+LNEDLRSWTAADT AQIT+R  EA + AE+ R+YLEG C+E L++YLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 666 E 668
           E
Sbjct: 204 E 204


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,961,336
Number of extensions: 1905080
Number of successful extensions: 11754
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 11458
Number of HSP's successfully gapped: 78
Length of query: 508
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 401
Effective length of database: 14,770,016
Effective search space: 5922776416
Effective search space used: 5922776416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000601
         (1525 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp...   426   e-119
Alignment   gi|NP_001020379.1| MHC class I family member [Mus musculus].         423   e-118
Alignment   gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al...   422   e-118
Alignment   gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].    419   e-117
Alignment   gi|XP_001003852.3| PREDICTED: h-2 class I histocompatibility an...   419   e-117
Alignment   gi|XP_003085178.1| PREDICTED: h-2 class I histocompatibility an...   419   e-117
Alignment   gi|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus mus...   417   e-116
Alignment   gi|XP_003086967.1| PREDICTED: h-2 class I histocompatibility an...   416   e-116
Alignment   gi|XP_979787.3| PREDICTED: h-2 class I histocompatibility antig...   415   e-116
Alignment   gi|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus ...   415   e-116

>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
           [Mus musculus].
          Length = 325

 Score =  426 bits (1094), Expect = e-119
 Identities = 197/275 (71%), Positives = 231/275 (84%)
 Frame = +3

Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
           HS+RYF+T+VSRP  G+PRFI VGYVDDTQFV FDSDA  PRMEPRAPW+E+EG EYW+R
Sbjct: 27  HSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYWER 86

Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
           ETQ +K N Q++ V+L  L GYYNQSE+GSHT+Q MYGC VG DG FLRGY Q+AYDG D
Sbjct: 87  ETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRD 146

Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
           YIALNEDL++WTAAD AA IT+RK E A AAE  R+YLE  CVE L +YLE+GK+TL R 
Sbjct: 147 YIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRT 206

Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
           +PPKTHVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 266

Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+PP
Sbjct: 267 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPP 301


>ref|NP_001020379.1| MHC class I family member [Mus musculus].
          Length = 382

 Score =  423 bits (1087), Expect = e-118
 Identities = 206/334 (61%), Positives = 243/334 (72%), Gaps = 2/334 (0%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HS+RYF+TAVSRP  G+PRFI VGYVDDTQFV FD DA NPR EP APW+E+EG EYW+R
Sbjct: 24   HSMRYFETAVSRPGLGEPRFISVGYVDDTQFVRFDGDAENPRYEPWAPWMEQEGPEYWER 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ETQI+KDN Q++R +L NL  YYNQSE GSHT Q + GCD+G DG  LRGY QFAY+G D
Sbjct: 84   ETQIAKDNVQSFRGSLRNLLLYYNQSEGGSHTFQRLSGCDLGSDGRLLRGYLQFAYEGQD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDL++WTAAD AA IT+RK E A AAE  ++YLEG CVE L++YLE GK+TL R 
Sbjct: 144  YIALNEDLKTWTAADMAALITRRKWEQAGAAELYKAYLEGECVEWLRRYLERGKETLLRT 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HVT HP  +  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVTHHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP--QXXXXXXXXXXXXXXXXXXXXXX 1019
            KWA++VVP G+EQ YTCHV HEGL EPLTLRW+PP                         
Sbjct: 264  KWASVVVPLGKEQKYTCHVHHEGLPEPLTLRWEPPPSTVSNMIIIEVLIVLGAVINIGAM 323

Query: 1020 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
                   K++ G KGG Y  A GS+S  GS + L
Sbjct: 324  VAFVLKSKRKIGGKGGVYALAGGSNSIHGSALFL 357


>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
           [Mus musculus].
          Length = 357

 Score =  422 bits (1086), Expect = e-118
 Identities = 198/276 (71%), Positives = 225/276 (81%)
 Frame = +3

Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
           PHSLRYF TAVSRP  G+PRFI VGYVDDTQFV FDSDA NPRMEPRA WIE+EG EYW+
Sbjct: 22  PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81

Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
           RET  ++D  + +RVNL  L GYYNQS   SHTLQ MYGCDVGPDG  LRGY Q AYDG 
Sbjct: 82  RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141

Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
           DYI+LNEDLRSWTA D A+QI+K K EA D A Q R+YL+G CVE L +YL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201

Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
           ++PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261

Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
           QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+PP
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEPP 297


>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
          Length = 368

 Score =  419 bits (1078), Expect = e-117
 Identities = 203/335 (60%), Positives = 246/335 (73%), Gaps = 2/335 (0%)
 Frame = +3

Query: 123  PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
            PHS+RYF+TAVSRP  G+P FI VGYVDDTQFV FD DA NPRMEPRAPW+E+EG EYW+
Sbjct: 27   PHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYWE 86

Query: 303  RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
            RETQI+K + Q ++ +L NL  YYNQS  GSHT Q MYGCD+G DG  LRGY QFAYDG+
Sbjct: 87   RETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDGS 146

Query: 483  DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
            DYIALN+DL++WTAAD AAQIT+R+ E    AE +R+YLE  C+E L++YLE+GK+TL R
Sbjct: 147  DYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLLR 206

Query: 663  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
             +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTF
Sbjct: 207  TDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 266

Query: 843  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-PQXXXXXXXXXXXXXXXXXXXXXX 1019
            QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P P                       
Sbjct: 267  QKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPRPSRDSNMVIIAVLVVLGVVIIIGA 326

Query: 1020 XXXXXWRKKRS-GEKGGSYTQAAGSDSAQGSDVSL 1121
                  + +R  G K  +Y  A GS+S QGS + L
Sbjct: 327  MVPFVLKSRRKIGGKEENYALAGGSNSVQGSALFL 361


>ref|XP_001003852.3| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
            isoform 9 [Mus musculus].
          Length = 385

 Score =  419 bits (1077), Expect = e-117
 Identities = 202/337 (59%), Positives = 242/337 (71%), Gaps = 5/337 (1%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HS+RYF+TA+SRP   +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 24   HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ETQI+K N Q++R +L   + YYNQSE G HT Q ++GCDVG DG  LRGY QFAYDG D
Sbjct: 84   ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDL +WTAAD AA IT+RK E A AAE  ++YLEG CVE L++YL++GK+TL R 
Sbjct: 144  YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP-----QXXXXXXXXXXXXXXXXXXX 1010
            KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW+PP                         
Sbjct: 264  KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWEPPPSTDSNMVIMAPMAVLVVLGAVIII 323

Query: 1011 XXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
                      ++  G KGG Y  A GS   QGSD+ L
Sbjct: 324  GAMVSFVLKSRRTIGGKGGDYAPAGGSKGGQGSDLFL 360


>ref|XP_003085178.1| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
            [Mus musculus].
          Length = 413

 Score =  419 bits (1077), Expect = e-117
 Identities = 202/337 (59%), Positives = 242/337 (71%), Gaps = 5/337 (1%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HS+RYF+TA+SRP   +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 52   HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 111

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ETQI+K N Q++R +L   + YYNQSE G HT Q ++GCDVG DG  LRGY QFAYDG D
Sbjct: 112  ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 171

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDL +WTAAD AA IT+RK E A AAE  ++YLEG CVE L++YL++GK+TL R 
Sbjct: 172  YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 231

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QD+ELVETRP+GDGTFQ
Sbjct: 232  DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 291

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP-----QXXXXXXXXXXXXXXXXXXX 1010
            KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW+PP                         
Sbjct: 292  KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWEPPPSTDSNMVIMAPMAVLVVLGAVIII 351

Query: 1011 XXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
                      ++  G KGG Y  A GS   QGSD+ L
Sbjct: 352  GAMVSFVLKSRRTIGGKGGDYAPAGGSKGGQGSDLFL 388


>ref|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus musculus].
          Length = 360

 Score =  417 bits (1071), Expect = e-116
 Identities = 204/336 (60%), Positives = 240/336 (71%), Gaps = 2/336 (0%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRYF TAVSRP  G+PRFI VGYVDDTQFV FDSDA NPRMEPRAPW+E+EG EYW+R
Sbjct: 24   HSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRAPWMEQEGPEYWER 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
             TQ+SK+N Q++RV+L     YYNQS+ GSHTLQ + GCD+GPDG  LRGY Q AYDG D
Sbjct: 84   NTQVSKENEQSFRVSLGTALSYYNQSKGGSHTLQWLVGCDLGPDGSLLRGYEQSAYDGRD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            Y+ALNEDL +WTAAD AA  T+ K E A  AE+ R+YLE  C+  L++YLE+GK+TL   
Sbjct: 144  YLALNEDLITWTAADLAALKTRSKLEQAGLAEKRRAYLEVDCLTWLRRYLELGKETLLHT 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HVT HPSS   VTLRCWALGFYP +I+LTWQ  G+D +QDMELVETRPSGDGTFQ
Sbjct: 204  DPPKAHVTHHPSSQGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPSGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWA+++VP GEE  YTCHV+HEGL EPLTLRW+PP                         
Sbjct: 264  KWASVMVPFGEEPRYTCHVEHEGLPEPLTLRWEPPPSTDSYMVIIAVLVVLGAVIIIGAV 323

Query: 1026 XXXWRK--KRSGEKGGSYTQAAGSDSAQGSDVSLTQ 1127
                 K  + +G K   Y Q  G DS Q SD+SL +
Sbjct: 324  VAFVMKRGRNTGGKVRDYAQDPGRDSPQSSDISLLE 359


>ref|XP_003086967.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain
            [Mus musculus].
          Length = 382

 Score =  416 bits (1068), Expect = e-116
 Identities = 202/334 (60%), Positives = 239/334 (71%), Gaps = 2/334 (0%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HS+RYF+TA+SRP   +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 24   HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ETQI+K N Q++R +L   + YYNQSE G HT Q ++GCDVG DG  LRGY QFAYDG D
Sbjct: 84   ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDL +WTAAD AA IT+RK E A AAE  ++YLEG CVE L++YL++GK+TL R 
Sbjct: 144  YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW                            
Sbjct: 264  KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKESYTVPSHQPMAVLVVLGAVIIIGAM 323

Query: 1026 XXXWRKKRS--GEKGGSYTQAAGSDSAQGSDVSL 1121
                 K R   G KGG Y  A GS   QGSD+ L
Sbjct: 324  VSFVLKSRRTIGGKGGDYAPAGGSKGGQGSDLFL 357


>ref|XP_979787.3| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain
            isoform 7 [Mus musculus].
          Length = 379

 Score =  415 bits (1067), Expect = e-116
 Identities = 201/332 (60%), Positives = 239/332 (71%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HS+RYF+TA+SRP   +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 24   HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ETQI+K N Q++R +L   + YYNQSE G HT Q ++GCDVG DG  LRGY QFAYDG D
Sbjct: 84   ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YIALNEDL +WTAAD AA IT+RK E A AAE  ++YLEG CVE L++YL++GK+TL R 
Sbjct: 144  YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204  DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW                            
Sbjct: 264  KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKESPSHQPMAVLVVLGAVIIIGAMVSF 323

Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
                R+   G KGG Y  A GS   QGSD+ L
Sbjct: 324  VLKSRRTIGG-KGGDYAPAGGSKGGQGSDLFL 354


>ref|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus musculus].
          Length = 354

 Score =  415 bits (1066), Expect = e-116
 Identities = 193/276 (69%), Positives = 225/276 (81%)
 Frame = +3

Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
           PH L YF T+VSRP  G+PRFI VGYVD+T+FV FDSDA NPR EPRAPW+E+EG EYW+
Sbjct: 51  PHLLSYFYTSVSRPGLGEPRFISVGYVDNTEFVRFDSDAENPRYEPRAPWMEQEGPEYWE 110

Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
           RETQ +K N Q +RVNL  L  YYNQS  GSHT+Q + GC+VG DG  LRGY QFAYDG 
Sbjct: 111 RETQKAKGNEQIFRVNLRTLLSYYNQSAGGSHTIQVISGCEVGSDGRLLRGYQQFAYDGR 170

Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
           DYIALNEDL++WTAAD AAQIT+RK E A A E+ ++YLEGACV+ L++YLE+GK+TL R
Sbjct: 171 DYIALNEDLKTWTAADMAAQITRRKWEQAGATEKSKAYLEGACVQSLRRYLELGKETLLR 230

Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            +PPK HVT H  SD  VTLRCWALGFYP  I LTWQ  G++ +QDMELVETRPSGDGTF
Sbjct: 231 TDPPKAHVTCHHRSDGDVTLRCWALGFYPANIILTWQLNGEELTQDMELVETRPSGDGTF 290

Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
           QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+PP
Sbjct: 291 QKWASVVVPLGKEQNYTCHVHHEGLPEPLTLRWEPP 326


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,814,495
Number of extensions: 1554786
Number of successful extensions: 9407
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 9132
Number of HSP's successfully gapped: 139
Length of query: 508
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 402
Effective length of database: 12,433,743
Effective search space: 4998364686
Effective search space used: 4998364686
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000601
         (1525 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].               599   e-171
Alignment   gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].               573   e-164
Alignment   gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a...   561   e-160
Alignment   gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a...   556   e-158
Alignment   gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].               556   e-158
Alignment   gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].               541   e-154
Alignment   gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa].                  459   e-129
Alignment   gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].               445   e-125
Alignment   gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].               411   e-115
Alignment   gi|XP_003361021.1| PREDICTED: class I histocompatibility antige...   256   2e-68

>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
          Length = 361

 Score =  599 bits (1545), Expect = e-171
 Identities = 295/361 (81%), Positives = 303/361 (83%)
 Frame = +3

Query: 57   MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
            MGPR                  PHSLRYFDTAVSRPDRGKPRFI VGYVDDTQFV FDSD
Sbjct: 1    MGPRALFLLLSGTLALTGTREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSD 60

Query: 237  APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
            APNPRMEPRAPWIE+EGQEYWD ET+ +  +AQT+RVNLNNLRGYYNQSEAGSHTLQSMY
Sbjct: 61   APNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMY 120

Query: 417  GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
            GCDVGPD LFLRGYSQ AYDGADYIALNEDLRSWTAADTAAQITKRK EAAD AEQMRSY
Sbjct: 121  GCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSY 180

Query: 597  LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
            LEGACVE LQKYL+MG +TLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR
Sbjct: 181  LEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 240

Query: 777  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
            EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 
Sbjct: 241  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQP 300

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPR 1136
                                      WRKKR GEKGGSYTQAAGSDSAQGSDVSLT+DPR
Sbjct: 301  PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRPGEKGGSYTQAAGSDSAQGSDVSLTKDPR 360

Query: 1137 V 1139
            V
Sbjct: 361  V 361


>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
          Length = 364

 Score =  573 bits (1478), Expect = e-164
 Identities = 284/364 (78%), Positives = 295/364 (81%)
 Frame = +3

Query: 48   LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
            +R+ GP+                  PHSL YF TAVSRPDRG  RFI VGYVDDTQFV F
Sbjct: 1    MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60

Query: 228  DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
            DSDAPNPRMEPRAPWI++EGQ+YWDRET+    +AQT RVNL  LRGYYNQSEAGSHT+Q
Sbjct: 61   DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120

Query: 408  SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
             MYGCDVGPDGL LRGY Q AYDGADYIALNEDLRSWTAADTAAQITKRK EAADAAE  
Sbjct: 121  VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180

Query: 588  RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
            RSYL+G CVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181  RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240

Query: 768  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
            WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241  WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300

Query: 948  PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQ 1127
            PQ                           WRKKRSGEKGGSYTQAAGSDSAQGSDVSLT+
Sbjct: 301  PQPPIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK 360

Query: 1128 DPRV 1139
            DPRV
Sbjct: 361  DPRV 364


>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  561 bits (1447), Expect = e-160
 Identities = 276/339 (81%), Positives = 285/339 (84%)
 Frame = +3

Query: 123  PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
            PHSL YF TAVSRPDRG  RF  VGYVDDTQFV FDSDAPN +MEPRA WI++EG EYWD
Sbjct: 23   PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYWD 82

Query: 303  RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
            RETQISK+ AQTYRV L  LRGYYNQSEAGSHTLQ MYGC +GPDGL LRGY Q AYDGA
Sbjct: 83   RETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDGA 142

Query: 483  DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
            DY+ALNEDLRSWTAADTAAQITKRK EAAD AE  RSYL+G CVE L+KYLEMGKDTLQR
Sbjct: 143  DYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQR 202

Query: 663  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 843  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 1022
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ                       
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQTPVPIVGIIVGLVLVLVAGAVVA 322

Query: 1023 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
                WRKKRSGEKGGSYTQAAGSDS QGSDVSLT+ PRV
Sbjct: 323  GVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361


>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
            chain-like [Sus scrofa].
          Length = 361

 Score =  556 bits (1433), Expect = e-158
 Identities = 272/339 (80%), Positives = 284/339 (83%)
 Frame = +3

Query: 123  PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
            PHSL YF TAVSRPDRG  RFI VGYVDDTQFV FD+ APNPRMEPR PWI++EGQ+YWD
Sbjct: 23   PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 82

Query: 303  RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
             ET+  KDNAQTY V LN LRGYYNQSEAGSHTLQSM+GC +GPDGL L GY Q AYDGA
Sbjct: 83   EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 142

Query: 483  DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
            DYIALNEDLRSWTAAD AAQI+KRK EAADAAE  RSYL+G CVE L++YLEMGKDTLQR
Sbjct: 143  DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 202

Query: 663  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 843  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 1022
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q                       
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322

Query: 1023 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
                WRK RSGEKGGSYTQAAGSDS QGSDVSLT+DPRV
Sbjct: 323  GVVIWRKTRSGEKGGSYTQAAGSDSDQGSDVSLTKDPRV 361


>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
          Length = 361

 Score =  556 bits (1432), Expect = e-158
 Identities = 274/339 (80%), Positives = 285/339 (84%)
 Frame = +3

Query: 123  PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
            PHSL YF TAVSRPD G  RFIEVGYVDDTQFV FDSDA NPRMEPRAPWIEKEGQ+YWD
Sbjct: 23   PHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYWD 82

Query: 303  RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
             ET+  K+ AQ  RV+L  LRGYYNQSEAGSHTLQSM+GC +GPDGL LRGY Q AYDGA
Sbjct: 83   EETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDGA 142

Query: 483  DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
            DYIALNEDLRSWTAADTAAQITKRK EAAD AEQ RSYL+G CVE L++YLEMGKDTLQR
Sbjct: 143  DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQR 202

Query: 663  AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            A+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203  ADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 843  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 1022
            QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q                       
Sbjct: 263  QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322

Query: 1023 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
                WRKKRSGEKGGSYTQAAGSDS QGSDVSLT+ PRV
Sbjct: 323  GVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361


>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
          Length = 361

 Score =  541 bits (1394), Expect = e-154
 Identities = 271/361 (75%), Positives = 282/361 (78%)
 Frame = +3

Query: 57   MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
            MGPR                  PHSL Y  T+VSRP RG+PRFI VG VDDT  V FDSD
Sbjct: 1    MGPRGLFLLLSGALALTGTRAGPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSD 60

Query: 237  APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
            A  PR EPRA WIE+EG EYWD ET+ISKDNAQT R NLN LRGYYNQSEA SHT+QS++
Sbjct: 61   ARKPRKEPRAWWIEQEGPEYWDEETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLF 120

Query: 417  GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
            GCDVGPD L LR Y Q AYDGADY+ALNEDLRSWTAADTAAQITKRK E A+ AEQ RSY
Sbjct: 121  GCDVGPDRLLLRRYRQDAYDGADYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSY 180

Query: 597  LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
            L+G CVEGLQKYLEMG+DTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR
Sbjct: 181  LQGLCVEGLQKYLEMGEDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 240

Query: 777  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
            EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q 
Sbjct: 241  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQT 300

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPR 1136
                                      WR KRSGEKGGSYTQAAGSDSAQGSDV L  DPR
Sbjct: 301  PVPMVGIIVGLVLVLVAGAMVAGVVIWRLKRSGEKGGSYTQAAGSDSAQGSDVFLPMDPR 360

Query: 1137 V 1139
            V
Sbjct: 361  V 361


>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
          Length = 401

 Score =  459 bits (1180), Expect = e-129
 Identities = 231/353 (65%), Positives = 253/353 (71%)
 Frame = +3

Query: 57   MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
            MGP+                  PHSLRYF TAVSRP R  PRF  VGYVDDTQFV FDS+
Sbjct: 1    MGPQALLLLLSGTLVLTQPWARPHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSN 60

Query: 237  APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
            APNPR EPR PW+E EG E  DR T+I KD +Q ++V+LN LRGYYNQSEAGSHT Q + 
Sbjct: 61   APNPREEPRTPWVELEGPECCDRNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLC 120

Query: 417  GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
            GC V  DG  LRGYSQFAYDGADYI LNEDLRSWTA   AAQIT+RK E    AEQ R+Y
Sbjct: 121  GCYVARDGRLLRGYSQFAYDGADYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAY 180

Query: 597  LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
            LE ACV+ L +YL  GK+TLQR++PPKTHVTRHPSSD  VTLRCWALGFYPKEISLTWQ+
Sbjct: 181  LEVACVQSLHRYLANGKETLQRSDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQ 240

Query: 777  EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
            EGQDQSQD+E+VETRPSGDGTF+KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 
Sbjct: 241  EGQDQSQDVEVVETRPSGDGTFRKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQP 300

Query: 957  XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDV 1115
                                      WRKK SG K   Y QA  S  ++ S V
Sbjct: 301  PVPIVGIIVGLVLVLVTGAVVTGVVIWRKKCSGGKVRKYQQAERSSRSENSGV 353


>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
          Length = 355

 Score =  445 bits (1144), Expect = e-125
 Identities = 216/331 (65%), Positives = 252/331 (76%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HS+RYF T VSRP  G+PR++EVGYVDDTQFV FDS+A NPRMEPRAPW+E+EGQEYWD 
Sbjct: 22   HSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDE 81

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            ETQ  KD  Q +R NL  LRGYYNQSE GSHT Q  YGC+ G  G  L  + Q+AYDG D
Sbjct: 82   ETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDGED 141

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YI LNEDL SWTAAD AA++T+RK + + A E+ +SYLEG CVE L++YLE G++ LQRA
Sbjct: 142  YITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRA 201

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
            +PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGTFQ
Sbjct: 202  DPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQ 261

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P +                        
Sbjct: 262  KWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR----LSAITIVGIVAGLVLLGAVI 317

Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1118
               W+K+ SG K GSY+QA  ++S + SDVS
Sbjct: 318  TVIWKKRFSGRKRGSYSQAPSNNSVENSDVS 348


>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
          Length = 369

 Score =  411 bits (1056), Expect = e-115
 Identities = 202/320 (63%), Positives = 232/320 (72%)
 Frame = +3

Query: 126  HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
            HSLRY    VSRP  G   +  VG++DDTQFV F SDA NPR+EPRAPW+E+EG+EYWDR
Sbjct: 52   HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 111

Query: 306  ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
            +T I+K++++  R NL  + G +N S++ SH+   + GCDVG +G  LRGY QF+YDG D
Sbjct: 112  QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDD 171

Query: 486  YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
            YI LNEDLRSWTA  T AQI +RK EA   AEQ R+YLE  CVE L+KYLE GKD LQRA
Sbjct: 172  YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 231

Query: 666  EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
             PPKTHVTRHP  D  VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 232  VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 291

Query: 846  KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
            KWAALVVP GEEQSYTC VQHEGLQEPLTLRW+PP                         
Sbjct: 292  KWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEPP---PLSLNLIMICIAVSVLVVTVLG 348

Query: 1026 XXXWRKKRSGEKGGSYTQAA 1085
               WRK+ SG   G+Y QAA
Sbjct: 349  TVIWRKRNSGGNRGNYVQAA 368


>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
           alpha chain-like [Sus scrofa].
          Length = 374

 Score =  256 bits (654), Expect = 2e-68
 Identities = 127/276 (46%), Positives = 175/276 (63%), Gaps = 1/276 (0%)
 Frame = +3

Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
           HSLRY   A+S P  G P+F+ VGYVDD  F+ +DS     + EP+APW+     +YW++
Sbjct: 42  HSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYWEK 99

Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
           ET+  +  A+  +V +  + GYYNQS +G H+ Q M+GC++  DG    G+ QF +DG D
Sbjct: 100 ETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDG-HSTGFWQFGFDGQD 157

Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADA-AEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
           +++L+ +  SW +A+  A  TKR  E     AE  ++Y+EG C+  L+KYLE+G     R
Sbjct: 158 HLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSR 217

Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
            EPP   VT+H + D G TLRCWALGFYP++ISL+W    ++ +   E VETRPSGDGT+
Sbjct: 218 REPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDGTY 277

Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
           Q W A  VP GEE  YTCHVQH  L   LT+ W+ P
Sbjct: 278 QTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWESP 313


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,369,876
Number of extensions: 1238589
Number of successful extensions: 7834
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 7657
Number of HSP's successfully gapped: 37
Length of query: 508
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 405
Effective length of database: 8,779,541
Effective search space: 3555714105
Effective search space used: 3555714105
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000601
         (1525 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         569   e-159
gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   333   2e-88
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22   170   1e-39
Sscrofa_ChrX                                                           94   3e-16
Sscrofa_Chr08                                                          88   2e-14
Sscrofa_Chr03                                                          86   7e-14
Sscrofa_Chr13                                                          82   1e-12
Sscrofa_Chr10                                                          82   1e-12
Sscrofa_Chr14                                                          80   4e-12
Sscrofa_Chr18                                                          76   6e-11

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  569 bits (287), Expect = e-159
 Identities = 366/391 (93%), Gaps = 2/391 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
                |||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct: 24642186 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 24642127

                                                                            
Query: 1195     gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
                |||||||| || |||||||||||| |||||||||||||||||||||| |||| |||||||
Sbjct: 24642126 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 24642067

                                                                            
Query: 1255     atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
                ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24642066 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 24642007

                                                                            
Query: 1315     caccctgacctgtgttctctttcctgatccactttccagctccaacaaggttggggggag 1374
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24642006 caccctgacctgtgttctctttcctgatccactttccagctccaac-aggttggggggag 24641948

                                                                            
Query: 1375     gcaggcggcaatggaccatctccatccttatactaaattcattgccctgactggtgactg 1434
                ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 24641947 gcaggcggcaatggaccatctccatccttatgctaagttcattgccctgactggtgactg 24641888

                                                                            
Query: 1435     cggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttcca 1494
                ||||||||| | || ||||| |||||| | ||| || |||||||||| ||||||||||||
Sbjct: 24641887 cggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttcca 24641828

                                               
Query: 1495     aaggcagggttccctaccgagggaaaagagc 1525
                |||||||||||||  ||| ||||||||||||
Sbjct: 24641827 aaggcagggttcctaaccaagggaaaagagc 24641797



 Score =  537 bits (271), Expect = e-150
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219



 Score =  537 bits (271), Expect = e-150
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055



 Score =  529 bits (267), Expect = e-147
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570



 Score =  529 bits (267), Expect = e-147
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600



 Score =  521 bits (263), Expect = e-145
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908



 Score =  513 bits (259), Expect = e-143
 Identities = 275/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996



 Score =  513 bits (259), Expect = e-143
 Identities = 274/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123



 Score =  462 bits (233), Expect = e-127
 Identities = 266/277 (96%)
 Strand = Plus / Minus

                                                                            
Query: 390      gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
                |||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306

                                                                            
Query: 450      cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
                ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246

                                                                            
Query: 510      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186

                                                                            
Query: 570      gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
                |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126

                                                     
Query: 630      tacctggagatggggaaggacacgctgcagcgcgcag 666
                |||||||||||||||||  ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089



 Score =  442 bits (223), Expect = e-121
 Identities = 265/279 (94%)
 Strand = Plus / Plus

                                                                            
Query: 664      cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
                |||| |||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121

                                                                            
Query: 724      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
                |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181

                                                                            
Query: 784      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
                ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241

                                                                            
Query: 844      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301

                                                       
Query: 904      agcacgagggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340



 Score =  387 bits (195), Expect = e-104
 Identities = 253/271 (93%), Gaps = 1/271 (0%)
 Strand = Plus / Minus

                                                                            
Query: 121      gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799

                                                                            
Query: 181      gtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccc 240
                ||| ||||   |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24644798 gtt-catctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740

                                                                            
Query: 241      cgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattggg 300
                |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680

                                                                            
Query: 301      atcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaacc 360
                ||  |||||| | || |  || || || ||||||||||| ||||||||||||||||||||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620

                                               
Query: 361      tgcgcggctactacaaccagagcgaggccgg 391
                |||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589



 Score =  387 bits (195), Expect = e-104
 Identities = 252/271 (92%)
 Strand = Plus / Minus

                                                                            
Query: 672      ccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgctgg 731
                |||||| || |||||||| |||||||||||||||||      |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541

                                                                            
Query: 732      gccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggaccag 791
                |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481

                                                                            
Query: 792      agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 851
                ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421

                                                                            
Query: 852      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 911
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361

                                               
Query: 912      ggcctgcaggagcccctcaccctgagatggg 942
                |||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330



 Score =  369 bits (186), Expect = 3e-99
 Identities = 252/274 (91%)
 Strand = Plus / Plus

                                                                            
Query: 669      cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgc 728
                ||||||||||| ||||||||||||||||||  || ||||      |||||  | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630

                                                                            
Query: 729      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 788
                ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690

                                                                            
Query: 789      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 848
                |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750

                                                                            
Query: 849      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 908
                ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810

                                                  
Query: 909      gagggcctgcaggagcccctcaccctgagatggg 942
                ||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844



 Score =  349 bits (176), Expect = 3e-93
 Identities = 248/272 (91%)
 Strand = Plus / Minus

                                                                            
Query: 120      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
                ||||||||||||||||| ||||||  |||||||||||||||||||||||||||| |||||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069

                                                                            
Query: 180      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
                || |||||||  |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009

                                                                            
Query: 240      ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
                || ||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949

                                                                            
Query: 300      gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
                ||||||||||| | || |  || || || |||||||||| |||||||||||||||| | |
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889

                                                
Query: 360      ctgcgcggctactacaaccagagcgaggccgg 391
                ||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857



 Score =  341 bits (172), Expect = 7e-91
 Identities = 212/224 (94%), Gaps = 1/224 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
                |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24704880 agtgtgagacagctgccttgtggggactgagtgacacaagatttgttcacgtcccacttt 24704821

                                                                            
Query: 1195     gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
                |||||||| ||||||||||||||| ||||||||||||| |||||| |||||| |||||||
Sbjct: 24704820 gtgacttcagatcccctgactcctatttctgcagctgcatctgaatgtgtctgtgttcct 24704761

                                                                            
Query: 1255     atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
                ||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct: 24704760 atgcgcatcatgagaggaggtggggacactggcccagccctgtcccccacgtcccctcct 24704701

                                                            
Query: 1315     caccctgacctgtgttctctttcctgatccactttccagctcca 1358
                ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 24704700 caccctgacctgtgttctcttccctgatccacttttcagctcca 24704657



 Score =  341 bits (172), Expect = 7e-91
 Identities = 247/272 (90%)
 Strand = Plus / Minus

                                                                            
Query: 120      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
                ||||||||||||||||| ||||||  |||||||||||||||||||||||||||| |  ||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168

                                                                            
Query: 180      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
                || |||||||  |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108

                                                                            
Query: 240      ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
                |||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048

                                                                            
Query: 300      gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
                |||  |||||| | || |  || |||||||||||||| | |||||||||||||||| | |
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988

                                                
Query: 360      ctgcgcggctactacaaccagagcgaggccgg 391
                ||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956



 Score =  339 bits (171), Expect = 3e-90
 Identities = 210/223 (94%)
 Strand = Plus / Plus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacacagatttgttcacgtcccactttg 1195
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24604646 agtgtgagacagctgccttgtggggactgagtgacacagatttgttcacgtcccactttg 24604705

                                                                            
Query: 1196     tgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttccta 1255
                ||||||| |||||||||||||||||||||||||| || | |||| |||||| ||| ||||
Sbjct: 24604706 tgacttcagatcccctgactcctgtttctgcagcagcatttgaatgtgtctgtgtcccta 24604765

                                                                            
Query: 1256     tgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcctc 1315
                |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 24604766 tgagcatcctgagaggaggtggggaccctggcccagtcctgccccccacgtcccctcctc 24604825

                                                           
Query: 1316     accctgacctgtgttctctttcctgatccactttccagctcca 1358
                |||||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 24604826 accctgacctgtgttctcttccctgatcctctttccagttcca 24604868



 Score =  335 bits (169), Expect = 4e-89
 Identities = 250/277 (90%)
 Strand = Plus / Minus

                                                                            
Query: 390      gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
                |||||||||||||||||||||||||  |||||| || ||||||||||||||||| |||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158

                                                                            
Query: 450      cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
                | ||||||||| |||  ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098

                                                                            
Query: 510      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
                |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038

                                                                            
Query: 570      gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
                ||||||||||||||   ||| ||||||||| ||||    |||||||||  |||||  | |
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978

                                                     
Query: 630      tacctggagatggggaaggacacgctgcagcgcgcag 666
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941



 Score =  331 bits (167), Expect = 7e-88
 Identities = 207/219 (94%), Gaps = 1/219 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
                ||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct: 24748521 agtgtgagacaactgccttgtggggactgagggacacaagatttgttcacatcccacttt 24748462

                                                                            
Query: 1195     gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
                |||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct: 24748461 gtgacttcagatcccctgactcctgtttctgcagctgcatctgaaagggtctgtgttcct 24748402

                                                                            
Query: 1255     atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
                ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24748401 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccacgtcccctcct 24748342

                                                       
Query: 1315     caccctgacctgtgttctctttcctgatccactttccag 1353
                ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 24748341 caccctgacctgtgttctcttccctgatcctctttccag 24748303



 Score =  327 bits (165), Expect = 1e-86
 Identities = 249/277 (89%)
 Strand = Plus / Minus

                                                                            
Query: 390      gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
                |||||||||||||||||||| ||||  |||||| || ||||||||||||||||| |||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672

                                                                            
Query: 450      cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
                |||||||||  ||||  ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612

                                                                            
Query: 510      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
                |||||||||||||||||||||| ||||||||||||| |||||||||||  ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552

                                                                            
Query: 570      gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
                |||| ||||||||  ||||| ||||||||| ||||| | |||||||||  |||||  |||
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492

                                                     
Query: 630      tacctggagatggggaaggacacgctgcagcgcgcag 666
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455



 Score =  317 bits (160), Expect = 1e-83
 Identities = 209/224 (93%), Gaps = 1/224 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
                ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 24655959 agtgtgagacagctgccttgtggggactgagggacacaagatttgttcacgtcccacttt 24655900

                                                                            
Query: 1195     gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
                |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 24655899 gtgacttcagatcccctgactcctgtttctgcagctgcctctgaaagtgtctgtgtttct 24655840

                                                                            
Query: 1255     atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
                |||||||||||||||| ||||||| || |||||| | ||||| ||||||  |||||||||
Sbjct: 24655839 atgagcatcatgagagtaggtgggaacactggcctaaccctgtcccccacatcccctcct 24655780

                                                            
Query: 1315     caccctgacctgtgttctctttcctgatccactttccagctcca 1358
                ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 24655779 caccctgacctgtgttctcttccctgatccacttttcagctcca 24655736



 Score =  307 bits (155), Expect = 1e-80
 Identities = 204/219 (93%), Gaps = 1/219 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
                ||||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct: 24721089 agtgtgagagagctgccttgtagggactgagggacacaagatttgttcacgtcccacttt 24721030

                                                                            
Query: 1195     gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
                |||||| | ||||||||||||| |||||||||||| || ||||||||||||| |||||||
Sbjct: 24721029 gtgactccagatcccctgactcttgtttctgcagcagcatctgaaagtgtctgtgttcct 24720970

                                                                            
Query: 1255     atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
                ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 24720969 atgagcatcatgagaagaggtggggaccctggcccagtcctgccccccatgtccccttct 24720910

                                                       
Query: 1315     caccctgacctgtgttctctttcctgatccactttccag 1353
                ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 24720909 caccctgacctgtgttctcttccctgatcctctttccag 24720871



 Score =  303 bits (153), Expect = 1e-79
 Identities = 246/277 (88%)
 Strand = Plus / Minus

                                                                            
Query: 390      gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
                ||||||||||||||||||||| |||  ||||||||||||||||||||| ||||| |||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102

                                                                            
Query: 450      cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
                ||| ||||| | | |  | ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042

                                                                            
Query: 510      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
                |||||||||||||||||||||||||||||||||||| ||||  ||||| ||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982

                                                                            
Query: 570      gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
                 ||| |||||||||   ||| ||||||||| ||||| | ||||||||| |||| ||||||
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922

                                                     
Query: 630      tacctggagatggggaaggacacgctgcagcgcgcag 666
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885



 Score =  301 bits (152), Expect = 6e-79
 Identities = 242/272 (88%)
 Strand = Plus / Minus

                                                                            
Query: 120      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
                ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |  | 
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653

                                                                            
Query: 180      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
                || |||||||  |||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593

                                                                            
Query: 240      ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
                |||||||||||||||||||| |||| |||||||||| || ||||||| ||||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533

                                                                            
Query: 300      gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
                |||  |||||| | ||    |||||||||||||||||||||| |||||  |||||||| |
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473

                                                
Query: 360      ctgcgcggctactacaaccagagcgaggccgg 391
                ||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441



 Score =  295 bits (149), Expect = 4e-77
 Identities = 245/277 (88%)
 Strand = Plus / Minus

                                                                            
Query: 390      gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
                ||||||||||||||||||||| |||  ||||||||||||||||||||| ||||| |||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231

                                                                            
Query: 450      cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
                ||| ||||| | | |  || |||||||||||| |||||  ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171

                                                                            
Query: 510      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
                ||||||||||||||||| |||||||||||||||||| |||||| |||| ||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111

                                                                            
Query: 570      gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
                 ||| |||||||||   ||| ||||||||| ||||| | ||||||||| |||||||||||
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051

                                                     
Query: 630      tacctggagatggggaaggacacgctgcagcgcgcag 666
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014



 Score =  280 bits (141), Expect = 2e-72
 Identities = 243/277 (87%)
 Strand = Plus / Minus

                                                                            
Query: 390      gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
                ||||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030

                                                                            
Query: 450      cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
                | | ||||||| |||  |||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970

                                                                            
Query: 510      cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
                |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910

                                                                            
Query: 570      gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
                 ||| ||| |||||   ||| ||||||||| |||||   ||||||||| ||||||  | |
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850

                                                     
Query: 630      tacctggagatggggaaggacacgctgcagcgcgcag 666
                ||| |||||||||  |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813



 Score =  276 bits (139), Expect = 3e-71
 Identities = 200/219 (91%), Gaps = 1/219 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacac-agatttgttcacgtcccacttt 1194
                |||||||||||||||||||||||||||  ||||  || ||||| |||||| |||||||||
Sbjct: 26674560 agtgtgagacagctgccttgtggggaccaagtgttacgagattcgttcacatcccacttt 26674501

                                                                            
Query: 1195     gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
                |||||||| |||||||||||||||||||||||||| || | |||  |||||| ||| |||
Sbjct: 26674500 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 26674441

                                                                            
Query: 1255     atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
                |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 26674440 atgagcatcatgagaggaggtggggaccctggcccagccctgtcccccacgtcccctcct 26674381

                                                       
Query: 1315     caccctgacctgtgttctctttcctgatccactttccag 1353
                ||||||||||||||||||||| |||||||| ||||||||
Sbjct: 26674380 caccctgacctgtgttctcttccctgatcctctttccag 26674342



 Score =  248 bits (125), Expect = 8e-63
 Identities = 195/219 (89%), Gaps = 12/219 (5%)
 Strand = Plus / Minus

                                                                            
Query: 1136     agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
                |||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 24684019 agtgtgagacagctgccttgtgggaactgagggacacaagatttgttcacgtcccacttt 24683960

                                                                            
Query: 1195     gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
                |||| | | |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 24683959 gtgaatccagatcccctgactcctgtttctgcagctgcctctgaaagggtctgtgttcct 24683900

                                                                            
Query: 1255     atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
                ||||||||| ||||||||||||||||||||||           |||||| ||||||||||
Sbjct: 24683899 atgagcatcctgagaggaggtggggaccctgg-----------cccccacgtcccctcct 24683851

                                                       
Query: 1315     caccctgacctgtgttctctttcctgatccactttccag 1353
                ||||||||||||||||||||| | |||||| ||||||||
Sbjct: 24683850 caccctgacctgtgttctcttccatgatcctctttccag 24683812



 Score =  246 bits (124), Expect = 3e-62
 Identities = 169/184 (91%)
 Strand = Plus / Minus

                                                                            
Query: 120      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
                |||||||||||||| || |||||   |||||||||||||||||||||||||||| |||||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490

                                                                            
Query: 180      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
                ||||||||||  |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430

                                                                            
Query: 240      ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
                ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370

                    
Query: 300      gatc 303
                ||||
Sbjct: 24707369 gatc 24707366



 Score =  226 bits (114), Expect = 3e-56
 Identities = 231/270 (85%)
 Strand = Plus / Minus

                                                                            
Query: 120      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
                ||||||||||||||||| ||| ||  |||| | ||||||||||| | ||||||| |||||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722

                                                                            
Query: 180      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
                || |||||||  ||||||| |||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662

                                                                            
Query: 240      ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
                ||||| | | ||| |||||||||||||  |  |||| || ||||||| | ||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602

                                                                            
Query: 300      gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
                ||   |||||| | |||||||||||||||||||||||||  | ||| ||| ||||||| |
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542

                                              
Query: 360      ctgcgcggctactacaaccagagcgaggcc 389
                ||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512



 Score =  218 bits (110), Expect = 7e-54
 Identities = 113/114 (99%)
 Strand = Plus / Plus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 24603860



 Score =  218 bits (110), Expect = 7e-54
 Identities = 231/270 (85%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                            
Query: 120      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
                ||||||||||||||||| ||| ||  |||| | ||||||||||| | ||||||| |||||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592

                                                                            
Query: 180      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
                || |||||||  ||||||| |||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532

                                                                            
Query: 240      ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
                ||||| | | ||| |||||||||||||  |  |||| || ||||||| | |||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473

                                                                            
Query: 300      gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
                ||   |||||| | |||||||||||||||||||||||||  ||||| ||| ||||||| |
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413

                                              
Query: 360      ctgcgcggctactacaaccagagcgaggcc 389
                ||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383



 Score =  218 bits (110), Expect = 7e-54
 Identities = 113/114 (99%)
 Strand = Plus / Minus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24749338



 Score =  204 bits (103), Expect = 1e-49
 Identities = 109/111 (98%)
 Strand = Plus / Minus

                                                                            
Query: 945      cctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtc 1004
                ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26675478 cctccacagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtc 26675419

                                                                   
Query: 1005     gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675418 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 26675368



 Score =  202 bits (102), Expect = 4e-49
 Identities = 111/114 (97%)
 Strand = Plus / Minus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                || ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24642988



 Score =  202 bits (102), Expect = 4e-49
 Identities = 111/114 (97%)
 Strand = Plus / Plus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctggaggaagaagtgctcaggt 27616571



 Score =  194 bits (98), Expect = 1e-46
 Identities = 110/114 (96%)
 Strand = Plus / Minus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctggaggaagaagcgctcaggt 24721892



 Score =  186 bits (94), Expect = 2e-44
 Identities = 109/114 (95%)
 Strand = Plus / Minus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                |||||||||||  |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824



 Score =  186 bits (94), Expect = 2e-44
 Identities = 109/114 (95%)
 Strand = Plus / Minus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                |||||| ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctggaggaagaagtgctcaggt 24705676



 Score =  184 bits (93), Expect = 1e-43
 Identities = 165/189 (87%)
 Strand = Plus / Minus

                                                                            
Query: 126      cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgtttc 185
                |||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||| | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407

                                                                            
Query: 186      atcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccccgaat 245
                 | || |||||||| ||||||||||||||||||||| ||||||||||||| || | ||||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347

                                                                            
Query: 246      ccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgggatcgg 305
                ||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||||||  |
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287

                         
Query: 306      gagacacag 314
                |||||||||
Sbjct: 27210286 gagacacag 27210278



 Score =  184 bits (93), Expect = 1e-43
 Identities = 165/189 (87%)
 Strand = Plus / Minus

                                                                            
Query: 126      cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgtttc 185
                |||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||| | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933

                                                                            
Query: 186      atcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccccgaat 245
                 | || |||||||| ||||||||||||||||||||| ||||||||||||| || | ||||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873

                                                                            
Query: 246      ccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgggatcgg 305
                ||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||||||  |
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813

                         
Query: 306      gagacacag 314
                |||||||||
Sbjct: 27629812 gagacacag 27629804



 Score =  168 bits (85), Expect = 6e-39
 Identities = 106/113 (93%)
 Strand = Plus / Plus

                                                                            
Query: 435      gacgggctcttcctccgcgggtacagtcagttcgcctacgacggcgcggattacatcgcc 494
                ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997

                                                                     
Query: 495      ctgaacgaggacctgcgctcctggaccgcggcggacacggcggctcagatcac 547
                ||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatcac 27615050



 Score =  163 bits (82), Expect = 3e-37
 Identities = 106/114 (92%)
 Strand = Plus / Minus

                                                                            
Query: 942      gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
                |||||| |||||||||| |||||||| |||| |||||||||||||||||| || ||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819

                                                                      
Query: 1002     gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
                ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctggaggaagaagcgctcaggt 24656765



 Score =  159 bits (80), Expect = 5e-36
 Identities = 224/272 (82%)
 Strand = Plus / Plus

                                                                            
Query: 120      ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
                |||||||||||||||||||||||| |||| ||||||||||| ||    ||  || | |||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508

                                                                            
Query: 180      cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
                || |||  ||  |||||||| || |||||||||||||||||| ||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568

                                                                            
Query: 240      ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
                ||||||||| ||  |||||||||| | |||||| | |||  |||||| | ||||||||| 
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628

                                                                            
Query: 300      gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
                |||||| | ||||  |||  |||||||| | |||||| || || ||||| ||||||   |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688

                                                
Query: 360      ctgcgcggctactacaaccagagcgaggccgg 391
                ||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720



 Score =  149 bits (75), Expect = 5e-33
 Identities = 93/99 (93%)
 Strand = Plus / Minus

                                                                            
Query: 24       tccgcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctg 83
                |||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 24645273 tccgcttctctccagactccgaggctgaggatcatggggccccgagccctcttcttgctg 24645214

                                                       
Query: 84       ctgtcggggaccctggccctgactgggacccgggcgggt 122
                |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 24645213 ctgtcggggaccctggccctgactggtacccgggagggt 24645175



 Score =  143 bits (72), Expect = 3e-31
 Identities = 87/92 (94%)
 Strand = Plus / Minus

                                                                            
Query: 27       gcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctgctg 86
                |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24659069 gcttctccccagactccgcggctgaggatcatggggccccgagccctcttcctgctgctg 24659010

                                                
Query: 87       tcggggaccctggccctgactgggacccgggc 118
                |||||| ||||||||||||| ||||| |||||
Sbjct: 24659009 tcgggggccctggccctgaccgggactcgggc 24658978



 Score =  143 bits (72), Expect = 3e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                            
Query: 27       gcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctgctg 86
                |||||||||||||||||| |||||||||||||||||||  |||||||| |||||||||||
Sbjct: 24687121 gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 24687062

                                                    
Query: 87       tcggggaccctggccctgactgggacccgggcgggt 122
                |||||||||||||||||||| ||||||| |||||||
Sbjct: 24687061 tcggggaccctggccctgaccgggacccaggcgggt 24687026



 Score =  135 bits (68), Expect = 8e-29
 Identities = 89/96 (92%)
 Strand = Plus / Minus

                                                                            
Query: 27       gcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctgctg 86
                |||||||||||||| ||| |||||||||||||||||||  |||||||| |||||||||||
Sbjct: 24751635 gcttctccccagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctg 24751576

                                                    
Query: 87       tcggggaccctggccctgactgggacccgggcgggt 122
                |||||||||||||||||||| ||||||| |||||||
Sbjct: 24751575 tcggggaccctggccctgaccgggacccaggcgggt 24751540



 Score =  133 bits (67), Expect = 3e-28
 Identities = 151/179 (84%)
 Strand = Plus / Plus

                                                                            
Query: 125      ccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgttt 184
                ||||||||||||| || || ||||||||||||||||||||| |||| || || |||| | 
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356

                                                                            
Query: 185      catcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccccgaa 244
                ||| |  |||||||||||||||||||||||  || || ||||||||||||||||||||||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416

                                                                           
Query: 245      tccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgggatc 303
                ||||  | |||||| |||| || ||||||| ||| || |||| |  |||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggatc 24620475



 Score =  133 bits (67), Expect = 3e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                            
Query: 24       tccgcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctg 83
                ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct: 24724198 tccgcttctccccagactccgcggctgaggatcatggggccccgaggcctcttcctgctg 24724139

                                                   
Query: 84       ctgtcggggaccctggccctgactgggacccgggc 118
                || |||||| ||||||||||||| ||||| |||||
Sbjct: 24724138 ctctcgggggccctggccctgaccgggactcgggc 24724104



 Score =  101 bits (51), Expect = 1e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                            
Query: 24       tccgcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctg 83
                |||||||||||||||||   | |||| ||||||||||||||  ||||||| |||||||||
Sbjct: 24707973 tccgcttctccccagacaaagaggctaaggatcatggggcctggagcccttgtcctgctg 24707914

                                                       
Query: 84       ctgtcggggaccctggccctgactgggacccgggcgggt 122
                ||||| ||| ||||||||||||| |||||| ||||||||
Sbjct: 24707913 ctgtccggggccctggccctgaccgggacctgggcgggt 24707875



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                      
Query: 1084     caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
                ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24642398 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 24642345



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 94/109 (86%)
 Strand = Plus / Plus

                                                                            
Query: 416      cggctgcgacgtgggaccagacgggctcttcctccgcgggtacagtcagttcgcctacga 475
                |||||||||||||||| | ||||||| | |||| || ||||||   |||||| |||||||
Sbjct: 27603744 cggctgcgacgtgggatccgacgggcgcatccttcgagggtacgagcagttctcctacga 27603803

                                                                 
Query: 476      cggcgcggattacatcgccctgaacgaggacctgcgctcctggaccgcg 524
                |||||  |||||||||| |||||| || |||||||||||||||||||||
Sbjct: 27603804 cggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852



 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 88/103 (85%)
 Strand = Plus / Plus

                                                                            
Query: 202      tggacgacacgcagttcgtgtggttcgacagcgacgccccgaatccgcggatggagccgc 261
                |||||||||||||||||||  |||||  |||||| ||| |||||||  || ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343

                                                           
Query: 262      gggcgccgtggatagagaaggagggtcaggagtattgggatcg 304
                ||||||||||||| ||| ||||||| | ||| |||||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggatcg 27603386



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                      
Query: 1084     caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
                ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 24604434 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 24604487



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 1433     tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                ||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 12277709 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 12277768

                                             
Query: 1493     caaaggcagggttccctaccgagggaaaa 1521
                | |||||||||||||  ||||||| ||||
Sbjct: 12277769 cgaaggcagggttcctaaccgaggaaaaa 12277797



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 462      cagttcgcctacgacggcgcggattacatcgccctgaacgaggacctgcgctcctggacc 521
                |||| |||||||||||||| |||||||||| |  |||||||||||||| | |||||||| 
Sbjct: 27209859 cagtacgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggact 27209800

                                                         
Query: 522      gcggcggacacggcggctcagatcaccaagcgcaagaggga 562
                || ||||||| |||||||| | ||||  |||||||| ||||
Sbjct: 27209799 gcagcggacatggcggctcgggtcacacagcgcaagtggga 27209759



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                            
Query: 462      cagttcgcctacgacggcgcggattacatcgccctgaacgaggacctgcgctcctggacc 521
                |||| |||||||||||||| |||||||||| |  |||||||||||||| | |||||||| 
Sbjct: 27629385 cagtacgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggact 27629326

                                                         
Query: 522      gcggcggacacggcggctcagatcaccaagcgcaagaggga 562
                || ||||||| |||||||| | ||||  |||||||| ||||
Sbjct: 27629325 gcagcggacatggcggctcgggtcacacagcgcaagtggga 27629285



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                       
Query: 1049     ctcaggtgaaaaaggagggagctacactcaggctgcagg 1087
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaaaggagggagctacactcaggctgcagg 24604307



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 1084     caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
                ||||||||||||||| ||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 24684231 caggcagtgacagtgaccagggctccgatgtgtcccttaccaaggatcctagag 24684178



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                     
Query: 1051     caggtgaaaaaggagggagctacactcaggctgcagg 1087
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgcagg 24642525



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                     
Query: 1051     caggtgaaaaaggagggagctacactcaggctgcagg 1087
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgcagg 24684358



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                     
Query: 1051     caggtgaaaaaggagggagctacactcaggctgcagg 1087
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgcagg 24748857



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1433     tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                ||||||||||| | ||||  || |||||| | ||| || |||||||||| ||||||||||
Sbjct: 80560412 tgcggggagccaaggagatgcaggaggccaaggaagggaactagcctgacggcacagttc 80560353

                                             
Query: 1493     caaaggcagggttccctaccgagggaaaa 1521
                | |||||||||||||  ||||||| ||||
Sbjct: 80560352 cgaaggcagggttcctaaccgaggaaaaa 80560324



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                            
Query: 1437     gggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaaa 1496
                ||||||| | |||| |||  ||||| | ||| || |||||||||||||||||||||| ||
Sbjct: 20392506 gggagccgaggagatacagaaggccaaggaagggaactagcctgatggcacagttccgaa 20392447

                           
Query: 1497     ggcagggttcc 1507
                |||||||||||
Sbjct: 20392446 ggcagggttcc 20392436



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 1084     caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
                ||||||||||||||| ||||||||| ||||||||||| ||| ||| ||||||||
Sbjct: 24748733 caggcagtgacagtgaccagggctccgatgtgtcccttaccaagggtcctagag 24748680



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 1084     caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
                ||||||| |||||||||||| |||||| ||||||||||| | ||||||||||||
Sbjct: 26674772 caggcagggacagtgcccagagctctggtgtgtccctcatcaaggatcctagag 26674719



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 1084     caggcagtgacagtgcccagggctctgatgtgt 1116
                |||||||||||||||||||||||||||||||||
Sbjct: 24656172 caggcagtgacagtgcccagggctctgatgtgt 24656140



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 1084     caggcagtgacagtgcccagggctctgatgtgt 1116
                |||||||||||||||||||||||||||||||||
Sbjct: 24705083 caggcagtgacagtgcccagggctctgatgtgt 24705051



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 1055     tgaaaaaggagggagctacactcaggctgcagg 1087
                |||||||||||||||||||||||||||||||||
Sbjct: 26674930 tgaaaaaggagggagctacactcaggctgcagg 26674898



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                             
Query: 55       tcatggggccccgagccctcgtcctgctgctgtcggggaccctgg 99
                |||||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 27614072 tcatggggccccgagccctcctcctgctgctctccgggaccctgg 27614116



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 1084     caggcagtgacagtgcccagggctctgatgtg 1115
                ||||||||||||||||||||||||||||||||
Sbjct: 24721300 caggcagtgacagtgcccagggctctgatgtg 24721269



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 1051     caggtgaaaaaggagggagctacactcaggct 1082
                ||||||||||||||||||||||||||||||||
Sbjct: 24721463 caggtgaaaaaggagggagctacactcaggct 24721432



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 81       ctgctgtcggggaccctggccctgactgggacccgggcgggt 122
                |||||||||||| ||||||||||||| |||||| ||||||||
Sbjct: 24627347 ctgctgtcgggggccctggccctgaccgggacctgggcgggt 24627306


>gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffold479
          Length = 309

 Score =  333 bits (168), Expect = 2e-88
 Identities = 201/212 (94%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1314 tcaccctgacctgtgttctctttcctgatccactttccagctccaacaaggttgggggga 1373
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1    tcaccctgacctgtgttctctttcctgatccactttccagctccaaca-ggttgggggga 59

                                                                        
Query: 1374 ggcaggcggcaatggaccatctccatccttatactaaattcattgccctgactggtgact 1433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   ggcaggcggcaatggaccatctccatccttatactaaattcattgccctgactggtgact 119

                                                                        
Query: 1434 gcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttcc 1493
            |||||||||| | |||||||| |||||| | ||| || ||||||||||||||||||||||
Sbjct: 120  gcggggagccaaggagacacaggaggccaaggaagggaactagcctgatggcacagttcc 179

                                            
Query: 1494 aaaggcagggttccctaccgagggaaaagagc 1525
            ||||||||||||||  ||| ||||||||||||
Sbjct: 180  aaaggcagggttcctaaccaagggaaaagagc 211


>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
          Length = 107

 Score =  170 bits (86), Expect = 1e-39
 Identities = 98/102 (96%)
 Strand = Plus / Plus

                                                                       
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2   ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61

                                                     
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtg 221
           || |||||||  ||||||||||||||||||||||||||||||
Sbjct: 62  cgcttcatcgccgtcggctacgtggacgacacgcagttcgtg 103


>Sscrofa_ChrX 
||          Length = 144288218

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1431     actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
                ||||||||||||| | |||| ||| |||||| | ||| || ||||||||||||| |||||
Sbjct: 74537185 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggtacagt 74537126

                                               
Query: 1491     tccaaaggcagggttccctaccgagggaaaa 1521
                |||||||||||||||||  ||||||| ||||
Sbjct: 74537125 tccaaaggcagggttcctaaccgaggaaaaa 74537095



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1431     actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
                ||||||||||||| | |||| ||| |||||| | ||| || ||||||||||||| |||||
Sbjct: 74666825 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggtacagt 74666884

                                               
Query: 1491     tccaaaggcagggttccctaccgagggaaaa 1521
                |||||||||||||||||  ||||||| ||||
Sbjct: 74666885 tccaaaggcagggttcctaaccgaggaaaaa 74666915



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 1433     tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                ||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 82812047 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 82812106

                                             
Query: 1493     caaaggcagggttccctaccgagggaaaa 1521
                | |||||||||||||  ||||||| ||||
Sbjct: 82812107 cgaaggcagggttcctaaccgaggaaaaa 82812135



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1433     tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                ||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 83585592 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 83585651

                               
Query: 1493     caaaggcagggttcc 1507
                | |||||||||||||
Sbjct: 83585652 cgaaggcagggttcc 83585666



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                            
Query: 1430     gactgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacag 1489
                |||||||||||||| | ||||  || |||||  | ||| || ||||||||||||||||||
Sbjct: 51210013 gactgcggggagccgaggagatgcaggaggctgaggaagggaactagcctgatggcacag 51209954

                                                
Query: 1490     ttccaaaggcagggttccctaccgagggaaaa 1521
                |||  |||||||||||||  ||||||| ||||
Sbjct: 51209953 ttctgaaggcagggttcctaaccgaggaaaaa 51209922



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1456     gaggccnangaangggactagcctgatggcacagttccaaaggcagggttccctaccgag 1515
                |||||| | ||| || |||||||||| ||||||||||| |||||||||||||  ||| ||
Sbjct: 96145572 gaggccgaggaagggaactagcctgacggcacagttccgaaggcagggttcctaaccaag 96145513

                      
Query: 1516     ggaaaa 1521
                ||||||
Sbjct: 96145512 ggaaaa 96145507



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1433     tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                ||||||||||| | ||||  || |||||| | | | || ||||||||||||||||||| |
Sbjct: 78168690 tgcggggagccgaggagatgcaggaggccaagggagggaactagcctgatggcacagtcc 78168631

                               
Query: 1493     caaaggcagggttcc 1507
                | |||||||||||||
Sbjct: 78168630 cgaaggcagggttcc 78168616


>Sscrofa_Chr08 
||          Length = 148491826

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1432     ctgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagtt 1491
                |||||||||||| | |||| ||| |||||| | ||| || ||||||||||||||||||||
Sbjct: 70193181 ctgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggcacagtt 70193122

                                
Query: 1492     ccaaaggcagggttcc 1507
                || |||||||||||||
Sbjct: 70193121 ccgaaggcagggttcc 70193106



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                           
Query: 1436    ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
               |||||||| | |||| ||| |||||| | ||| || |||||||||||||||||||||| |
Sbjct: 7154104 ggggagccaaggagatacaggaggcctaggaagggaactagcctgatggcacagttccca 7154045

                                         
Query: 1496    aggcagggttccctaccgagggaaaa 1521
               ||||||||||||  ||| ||||||||
Sbjct: 7154044 aggcagggttcctaaccaagggaaaa 7154019



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                           
Query: 1436    ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
               |||||||| | |||| ||| |||||| | ||| || |||||||||||||||||||||| |
Sbjct: 7300654 ggggagccaaggagatacaggaggcctaggaagggaactagcctgatggcacagttccca 7300595

                                         
Query: 1496    aggcagggttccctaccgagggaaaa 1521
               ||||||||||||  ||| ||||||||
Sbjct: 7300594 aggcagggttcctaaccaagggaaaa 7300569


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 1431     actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
                ||||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||
Sbjct: 76531790 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagt 76531731

                                               
Query: 1491     tccaaaggcagggttccctaccgagggaaaa 1521
                ||| |||||||||||||  ||||||| ||||
Sbjct: 76531730 tccgaaggcagggttcctaaccgaggaaaaa 76531700


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                             
Query: 1433      tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                 ||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 185153321 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 185153262

                                              
Query: 1493      caaaggcagggttccctaccgagggaaaa 1521
                 | |||||||||||||  ||||||| ||||
Sbjct: 185153261 cgaaggcagggttcctaaccgaggaaaaa 185153233



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                             
Query: 1433      tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                 ||||||||||| | |||| ||| ||| || | ||| || |||||||||||||||||||||
Sbjct: 171962096 tgcggggagccaaggagatacaggagaccaaggaagggaactagcctgatggcacagttc 171962037

                                
Query: 1493      caaaggcagggttcc 1507
                 | |||||||||||||
Sbjct: 171962036 cgaaggcagggttcc 171962022



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                            
Query: 1433     tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                ||||||||||| | ||||  || |||||| | ||  || |||||||||||||||||||||
Sbjct: 61831738 tgcggggagccgaggagatgcaggaggccgaggaggggaactagcctgatggcacagttc 61831797

                                        
Query: 1493     caaaggcagggttccctaccgagg 1516
                  |||||||||||||  |||||||
Sbjct: 61831798 tgaaggcagggttcctaaccgagg 61831821



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                         
Query: 1452      acangaggccnangaangggactagcctgatggcacagttccaaaggcagggttcc 1507
                 ||| |||||| | ||| || |||||||||||||||||||||  |||||||||||||
Sbjct: 118134497 acaggaggccaaggaagggaactagcctgatggcacagttctgaaggcagggttcc 118134552



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                             
Query: 1436      ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
                 |||||||| | |||| | | |||||| | ||| || ||||||||||  ||||||||||||
Sbjct: 137803042 ggggagccgaggagataaaggaggccaaggaagggaactagcctgacagcacagttccaa 137802983

                             
Query: 1496      aggcagggttcc 1507
                 ||||||||||||
Sbjct: 137802982 aggcagggttcc 137802971



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                             
Query: 1436      ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
                 |||||||| | |||| ||| ||| || | ||| || | |||||||||||||||||||| |
Sbjct: 172394277 ggggagccaaggagatacaggagaccaaggaagggaattagcctgatggcacagttccga 172394218

                             
Query: 1496      aggcagggttcc 1507
                 ||||||||||||
Sbjct: 172394217 aggcagggttcc 172394206



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 1458   ggccnangaangggactagcctgatggcacagttccaaaggcagggttccctaccgaggg 1517
              |||| | ||| || |||||||||| || ||||||||||||||||||||||  ||||||| 
Sbjct: 710744 ggccaaggaagggaactagcctgacggaacagttccaaaggcagggttcctaaccgagga 710685

                  
Query: 1518   aaaa 1521
              ||||
Sbjct: 710684 aaaa 710681



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 1456     gaggccnangaangggactagcctgatggcacagttccaaaggcagggttcc 1507
                |||||| | ||| || ||||||||||  ||||||||||||||||||||||||
Sbjct: 53896572 gaggccgaggaagggaactagcctgactgcacagttccaaaggcagggttcc 53896623


>Sscrofa_Chr10 
||          Length = 79102373

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                            
Query: 1433     tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                ||||||||||| | |||| ||| |||||| | ||| || |||||||||||| ||||||||
Sbjct: 64928010 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatgacacagttc 64928069

                                             
Query: 1493     caaaggcagggttccctaccgagggaaaa 1521
                | |||||||||||||  ||||||| ||||
Sbjct: 64928070 cgaaggcagggttcctaaccgaggaaaaa 64928098


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                             
Query: 1433      tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
                 ||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 116915238 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 116915179

                                         
Query: 1493      caaaggcagggttccctaccgagg 1516
                 | |||||||||||||  |||||||
Sbjct: 116915178 cgaaggcagggttcctaaccgagg 116915155



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                             
Query: 1431      actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
                 ||||||||||||| | || |  || |||||| | ||| || ||||||||||  |||| ||
Sbjct: 153664489 actgcggggagccgaggacatgcaggaggccgaggaagggaactagcctgacagcacggt 153664430

                                           
Query: 1491      tccaaaggcagggttccctaccgagg 1516
                 |||||||||||||||||  |||||||
Sbjct: 153664429 tccaaaggcagggttcctcaccgagg 153664404



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                             
Query: 1431      actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
                 ||||||||||||| | || |  || |||||| | ||| || ||||||||||  |||| ||
Sbjct: 153808065 actgcggggagccgaggacatgcaggaggccgaggaagggaactagcctgacagcacggt 153808124

                                           
Query: 1491      tccaaaggcagggttccctaccgagg 1516
                 |||||||||||||||||  |||||||
Sbjct: 153808125 tccaaaggcagggttcctcaccgagg 153808150


>Sscrofa_Chr18 
||          Length = 61220071

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1452     acangaggccnangaangggactagcctgatggcacagttccaaaggcagggttccctac 1511
                ||| |||||| | ||| || |||||||||||||||||||||| |||||||||||||  ||
Sbjct: 42670444 acaggaggccaaggaagggaactagcctgatggcacagttccgaaggcagggttcctaac 42670385

                          
Query: 1512     cgagggaaaa 1521
                ||||| ||||
Sbjct: 42670384 cgaggaaaaa 42670375



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                            
Query: 1436     ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
                |||||||| | |||| ||| |||||| | ||| || ||||||||||  |||||||||| |
Sbjct: 15568815 ggggagccgaggagatacaggaggccaaggaagggaactagcctgacagcacagttccga 15568756

                                          
Query: 1496     aggcagggttccctaccgagggaaaa 1521
                ||||||||||||  ||||||| ||||
Sbjct: 15568755 aggcagggttcctaaccgaggaaaaa 15568730



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1432     ctgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagtt 1491
                |||||||||||| | |||| ||| |||| | | ||| || || |||||||||||||||||
Sbjct: 38803315 ctgcggggagccgaggagatacaggaggtcaaggaagggaaccagcctgatggcacagtt 38803256

                                
Query: 1492     ccaaaggcagggttcc 1507
                |  |||||||||||||
Sbjct: 38803255 ctgaaggcagggttcc 38803240



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1432     ctgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagtt 1491
                |||||||||||| | |||| ||| |||| | | ||| || || |||||||||||||||||
Sbjct: 39220173 ctgcggggagccgaggagatacaggaggtcaaggaagggaaccagcctgatggcacagtt 39220114

                                
Query: 1492     ccaaaggcagggttcc 1507
                |  |||||||||||||
Sbjct: 39220113 ctgaaggcagggttcc 39220098


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,602,918
Number of extensions: 511
Number of successful extensions: 511
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 125
Length of query: 1525
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1504
Effective length of database: 2,808,413,156
Effective search space: 4223853386624
Effective search space used: 4223853386624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)