Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000601
(1525 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru... 501 e-142
Alignment gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru... 501 e-142
Alignment gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus]. 495 e-140
Alignment gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru... 494 e-140
Alignment gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ... 494 e-139
Alignment gi|NP_001035644.1| major histocompatibility complex, class I, A... 493 e-139
Alignment gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]. 493 e-139
Alignment gi|NP_001108327.1| major histocompatibility complex, class I, A... 492 e-139
Alignment gi|NP_001180225.1| MHC class I heavy chain [Bos taurus]. 484 e-137
Alignment gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp... 476 e-134
>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
Length = 358
Score = 501 bits (1291), Expect = e-142
Identities = 251/356 (70%), Positives = 269/356 (75%)
Frame = +3
Query: 57 MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
MGPR HSLRYF TAVSRP G+PRFI VGYVDDTQF FDSD
Sbjct: 1 MGPRTLLLLLSGVLVLTETLAGSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSD 60
Query: 237 APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
APNPR EPR PW+E+EG EYWDR T+I KD AQT+RV LN LRGYYNQSEAGSHTLQ M
Sbjct: 61 APNPREEPRVPWMEQEGLEYWDRNTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMS 120
Query: 417 GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
GCDVGPDG LRG+ QF YDG +YIALNEDLRSWTAADTAAQITKRK EAA AAE R+Y
Sbjct: 121 GCDVGPDGRLLRGFWQFGYDGRNYIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNY 180
Query: 597 LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
+EG CVEGL++YLE GKD L RA+PPK HVT HP S+ VTLRCWALGFYP+EISLTWQR
Sbjct: 181 VEGRCVEGLRRYLENGKDALLRADPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQR 240
Query: 777 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
EG+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+PPQ
Sbjct: 241 EGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQ- 299
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
WRKKRSGEKG YTQAA SDS QGSD+SLT
Sbjct: 300 -TSFLTMGIIVGLVLLVVAVVAGAVIWRKKRSGEKGRIYTQAASSDSTQGSDMSLT 354
>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
Length = 361
Score = 501 bits (1290), Expect = e-142
Identities = 252/359 (70%), Positives = 271/359 (75%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+R+M PR HSLRYF T VSRP G+PRFI VGYVDDTQFV F
Sbjct: 1 MRVMRPRTLLLLLSGVLVLTETLAGSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDA +PR EPR PW+E+EG EYWDRET+ KD AQT+RVNLN L GYYNQSEAGSHTLQ
Sbjct: 61 DSDAADPRTEPRVPWMEQEGPEYWDRETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
MYGCDV PDG FLRGY Q AYDG DYIALN+DLRSWTAADTAAQITKRK EAA AE+
Sbjct: 121 WMYGCDVEPDGRFLRGYRQDAYDGRDYIALNQDLRSWTAADTAAQITKRKWEAAGEAERR 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R+YLEG CVE L++YLE GKDTL RA+PPK HVTRHPSSD VTLRCWALGFYP+EISLT
Sbjct: 181 RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPSSDREVTLRCWALGFYPEEISLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
WQ G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P
Sbjct: 241 WQHNGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEP 300
Query: 948 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
PQ WRKK SGEKG YTQAA SDSAQGSDVSLT
Sbjct: 301 PQ--TSFLTMGIIVGLVVLVVAVVAGAVIWRKKHSGEKGRIYTQAASSDSAQGSDVSLT 357
>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
Length = 361
Score = 495 bits (1274), Expect = e-140
Identities = 244/359 (67%), Positives = 269/359 (74%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+R+MGPR HS+RYF TAVSRP G+P+++EVGYVDDTQFV F
Sbjct: 1 MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDAPNPRMEPRA W+++EG EYWD ETQ +K Q +RVNLN LRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
M GCDVGPDG RG+ QF YDG DY+ALNEDLRSWTAADT AQI+KRK EAA AAE
Sbjct: 121 WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R Y+EG CVE L++YLE GKDTL RA+PPK HVT HP SD VTLRCWALGFYPKEISLT
Sbjct: 181 RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300
Query: 948 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
PQ WRKK SGEKG +YTQA+ +DSAQGSDVSLT
Sbjct: 301 PQ--TPFLTVGIIVGLVLLVVAVVAGAVIWRKKCSGEKGRTYTQASSNDSAQGSDVSLT 357
>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
Length = 363
Score = 494 bits (1273), Expect = e-140
Identities = 243/359 (67%), Positives = 270/359 (75%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+R+MGPR HSLRYF TAVSRP G+PRFI VGYVDDTQFV F
Sbjct: 1 MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDAPNPRMEPRA W+E+EG EYWDRET+ SKD AQ +RV+LN LRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
MYGC VGPDG RG++Q+ YDG DY+ALNEDLRSWTA +T AQI+KRK EAA AE+
Sbjct: 121 LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R+YLEG CVE L++YLE GKDTL RA+PPK HVTRHP S VTLRCWALGFYP+EISLT
Sbjct: 181 RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300
Query: 948 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
PQ KKRSGEK G+Y QA+ SDSAQGSDVSLT
Sbjct: 301 PQPSFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQASSSDSAQGSDVSLT 359
>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
Length = 398
Score = 494 bits (1271), Expect = e-139
Identities = 243/343 (70%), Positives = 269/343 (78%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF TAVSRP G+PRFI VGYVDDT+FV FDSDAP+PRMEPRA W+E+EG EYWD+
Sbjct: 52 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ET+ +KD AQT+R NLN+LRGYYNQSEAGSHTLQ MYGCDVGPDG LRGY Q+ YDG D
Sbjct: 112 ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDLRSWTAADTAAQI+KRK EAA A ++R YL G CVE L++YLE GK+TL RA
Sbjct: 172 YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HVT HP S VTLRCWALGFYP+EI LTWQ G+DQ+QDMELVETRP GDG FQ
Sbjct: 232 DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+PPQ
Sbjct: 292 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ--TPFLTMGIIVGLVLLVVAVVAG 349
Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV*DSCL 1154
WRKKRSGEKG +YTQA+ SDSAQGSDVSLT P+ C+
Sbjct: 350 AVIWRKKRSGEKGRTYTQASSSDSAQGSDVSLTV-PKAASECI 391
>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 362
Score = 493 bits (1270), Expect = e-139
Identities = 245/358 (68%), Positives = 267/358 (74%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+R++GPR HSLRYF TAVSRP G+PRFI VGYVDDTQFV F
Sbjct: 1 MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDAP+PR+EP A W+E+EG EYW +ETQ +KD AQ +RV LN LRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
MYGCDVGPDGL LRGY QFAYDG DYIALNEDLRSWTAADTAAQ+TK EAA A ++
Sbjct: 121 EMYGCDVGPDGL-LRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R YLEG CVE L++YL GKDTL RA+PPKTHV HP SD VTLRCWALGFYP EISLT
Sbjct: 180 RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240 WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299
Query: 948 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
PQ WRKK SGEKG YTQ A S S QGSDVSL
Sbjct: 300 PQPSIPIMGIIVGLVLLMVTGAVVTGAMIWRKKHSGEKGRGYTQTASSYSDQGSDVSL 357
>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
Length = 359
Score = 493 bits (1270), Expect = e-139
Identities = 246/356 (69%), Positives = 270/356 (75%)
Frame = +3
Query: 57 MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
MGPR HSLRYF TAVSRP G+PRFI VGYVDDTQFV FDSD
Sbjct: 1 MGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSD 60
Query: 237 APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
A +PR+EPRA W+E+EG EYWD+ET+ +KD+AQ +R+ LN LRGYYNQSEAGSHTLQ MY
Sbjct: 61 AGDPRVEPRARWVEQEGPEYWDQETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMY 120
Query: 417 GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
GCDVGPDG LRG+ QF Y+G DYIALNEDLRSWTAADTAAQI+KRK EAAD AE+ R+Y
Sbjct: 121 GCDVGPDGRLLRGFWQFGYEGRDYIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNY 180
Query: 597 LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
LEG CVE L +YLE GKDTL RA+PPK HVT HP S VTLRCWALGFYP+EISLTWQR
Sbjct: 181 LEGTCVEWLPRYLENGKDTLLRADPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQR 240
Query: 777 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
G+DQ+QDMELVETRPSGDGTFQKW ALVVP GEEQ YTC VQHEGLQEPLTLRW+PPQ
Sbjct: 241 NGEDQTQDMELVETRPSGDGTFQKWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ- 299
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
W KKRSGEKGG+Y QA+ SDSAQGSDVSLT
Sbjct: 300 TSFLTMGIIVGLVLLVTGAVVAGFVIWMKKRSGEKGGNYIQASRSDSAQGSDVSLT 355
>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 363
Score = 492 bits (1267), Expect = e-139
Identities = 241/333 (72%), Positives = 263/333 (78%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF TAVSRP G+PRFI VGYVDDTQFV FDSDAP+PR+EP A W+E+EG EYW +
Sbjct: 28 HSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQEGPEYWHQ 87
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQ +KD AQ +RV LN LRGYYNQSEAGSHT+Q MYGCDVGPDGL LRGY QFAYDG D
Sbjct: 88 ETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGL-LRGYDQFAYDGRD 146
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDLRSWTAADTAAQ+TK EAA A ++R YLEG CVE L++YL GKDTL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTGKDTLLRA 206
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPKTHV HP SD VTLRCWALGFYP+EISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 266
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+PPQ
Sbjct: 267 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIPIMGIIVGLVHLMVTGAMVTG 326
Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
WRKK SGEKG Y+QA+ SDS QGSDV LT
Sbjct: 327 AVIWRKKHSGEKGRIYSQASSSDSDQGSDVPLT 359
>ref|NP_001180225.1| MHC class I heavy chain [Bos taurus].
Length = 359
Score = 484 bits (1247), Expect = e-137
Identities = 240/356 (67%), Positives = 265/356 (74%)
Frame = +3
Query: 57 MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
MGPR HS+RYF TAVSRP G+PR++EVGYVDDTQFV FDSD
Sbjct: 1 MGPRTLLLLLSGVLVLTETRAGSHSMRYFSTAVSRPGLGEPRYLEVGYVDDTQFVRFDSD 60
Query: 237 APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
APNPR+EP A W+E+EG EYW +ETQ +KD AQ +RV LN LRGYYNQSEAGSHT+Q MY
Sbjct: 61 APNPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMY 120
Query: 417 GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
GCDVGPDGL LRGY QFAYDG DYIALNEDLRSWTAADTAAQ+TK EAA A ++R Y
Sbjct: 121 GCDVGPDGL-LRGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIY 179
Query: 597 LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
LEG CVE L++YLE GKDTL RA+PPK HVT H S VTLRCWALGFYP++ISLTWQR
Sbjct: 180 LEGTCVEWLRRYLETGKDTLLRADPPKAHVTHHSISGHEVTLRCWALGFYPEDISLTWQR 239
Query: 777 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTL+W+PPQ
Sbjct: 240 NGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQP 299
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
KKRSGEK G+Y QA+ SDSAQGSDVSLT
Sbjct: 300 SFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQASSSDSAQGSDVSLT 355
>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
[Bos taurus].
Length = 360
Score = 476 bits (1224), Expect = e-134
Identities = 235/356 (66%), Positives = 261/356 (73%)
Frame = +3
Query: 57 MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
MGPR HS+RYF TAVSRP G+PR++EVGYVDDTQFV FDSD
Sbjct: 1 MGPRTLLLLLSGVLVLTETRAGSHSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSD 60
Query: 237 APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
A NPRMEPR W+++EG EYWDR T+ +K NAQ++RV LN LRGYYNQSEAGSHTLQ M
Sbjct: 61 ARNPRMEPRTRWVKQEGPEYWDRNTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMS 120
Query: 417 GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
GC VGPDG LRG+ Q+ YDG DY+ALNEDLRSWTAADT AQITKRK EA AE R+Y
Sbjct: 121 GCYVGPDGRLLRGFMQYGYDGRDYLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNY 180
Query: 597 LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
LEG CVE L++++E GKDTL RA+PPK HVT HP SD VTLRCWALGFYP+EISLTWQ
Sbjct: 181 LEGECVEWLRRHMENGKDTLLRADPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQH 240
Query: 777 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTC VQHEGLQEPLTL+W+PPQ
Sbjct: 241 NGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQP 300
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
KK SGEK G+Y QA SDSAQGSDVSLT
Sbjct: 301 SFLTMGIIVGLVLLVVTGAVVAGVVICMKKPSGEKRGTYIQALSSDSAQGSDVSLT 356
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,751,973
Number of extensions: 1902148
Number of successful extensions: 12006
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 11740
Number of HSP's successfully gapped: 70
Length of query: 508
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 401
Effective length of database: 14,140,958
Effective search space: 5670524158
Effective search space used: 5670524158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000601
(1525 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]. 472 e-133
Alignment gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris]. 465 e-131
Alignment gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris]. 442 e-124
Alignment gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]. 381 e-106
Alignment gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris]. 381 e-106
Alignment gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein... 197 3e-50
Alignment gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s... 138 2e-32
Alignment gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote... 71 3e-12
Alignment gi|XP_860822.1| PREDICTED: similar to T-cell surface glycoprote... 71 3e-12
Alignment gi|NP_001122309.1| T-cell surface glycoprotein CD1a [Canis lupu... 69 1e-11
>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
Length = 361
Score = 472 bits (1215), Expect = e-133
Identities = 235/338 (69%), Positives = 262/338 (77%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF T+VSRP RG PRFI VGYVDDTQFV FDSDA RMEPRAPW+E+EG EYWDR
Sbjct: 27 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDR 86
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ET+ K+ AQ YRV+L+ LRGYYNQSEAGSHT Q+MYGCD+GP G LRGYSQ AYDGAD
Sbjct: 87 ETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGAD 146
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDLRSWTAADTAAQIT+RK EAA AE R+YLE CVE L++YLEMGK+TL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRA 206
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 EPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEP--SPLSTIVIVSIAALVLLVVSGVIG 324
Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 325 AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
Length = 358
Score = 465 bits (1197), Expect = e-131
Identities = 230/338 (68%), Positives = 261/338 (77%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF T+VSRP RG PRFI VGYVDDTQFV FDSDA RMEPRAPW+E+EG EYWD
Sbjct: 24 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYWDP 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
+T+ K+ A+T+RV+L+ LRGYYNQSEAGSHT Q M+GCD+GP G LRGYSQ AYDGAD
Sbjct: 84 QTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDGAD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDLRSWTAAD AAQIT+RKREAA A +R+YLE CVE L++YLEMGK+TL RA
Sbjct: 144 YIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLLRA 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 204 EPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P
Sbjct: 264 KWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEP--SPLSTIVIVSIAALVLLVVAGVIG 321
Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 322 AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 358
>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
Length = 361
Score = 442 bits (1138), Expect = e-124
Identities = 217/338 (64%), Positives = 255/338 (75%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLR+F TAVSRP RG P +I VGYVDDTQF+ F+SDA +P++EPRA W+E+EG E+W+
Sbjct: 27 HSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEE 86
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
+T+I+K +AQT R NL GYYNQSEAGSHT Q GCDVGPDG LRGY QFAYDGAD
Sbjct: 87 QTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGAD 146
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
Y+AL+EDLRSWTAAD AAQIT+RK EAA AA+ R YL+G CV+ L KYLE GK+TLQ
Sbjct: 147 YLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLT 206
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK ++TRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 DPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEP--SPLSTIVIVSIAALVLLVVAGVIG 324
Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 325 AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
Length = 381
Score = 381 bits (979), Expect = e-106
Identities = 193/350 (55%), Positives = 235/350 (67%), Gaps = 5/350 (1%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLR+ +T VSRP G+PR V YVDDT F F+S+ R EP W+E+EG EYW+
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 306 ETQISKDNAQTYRVNLNNL-RGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
T S+ Q R LN + + Y NQS GSHT Q++ GCDVGPDG FLRGY + AYDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DYI L+EDLRSW D AQIT+RK +AA AE +++LEG C+E L+++LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXXX 1019
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ PPQ
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331
Query: 1020 XXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTQDPRV*DSCLVG 1160
WRKK SG KGGSY+QA G SAQ S +S+ P SCLVG
Sbjct: 332 VGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSV-MAPNEQASCLVG 380
>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
Length = 381
Score = 381 bits (979), Expect = e-106
Identities = 193/350 (55%), Positives = 235/350 (67%), Gaps = 5/350 (1%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLR+ +T VSRP G+PR V YVDDT F F+S+ R EP W+E+EG EYW+
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 306 ETQISKDNAQTYRVNLNNL-RGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
T S+ Q R LN + + Y NQS GSHT Q++ GCDVGPDG FLRGY + AYDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DYI L+EDLRSW D AQIT+RK +AA AE +++LEG C+E L+++LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXXX 1019
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ PPQ
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331
Query: 1020 XXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTQDPRV*DSCLVG 1160
WRKK SG KGGSY+QA G SAQ S +S+ P SCLVG
Sbjct: 332 VGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSV-MAPNEQASCLVG 380
>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
(Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
familiaris].
Length = 315
Score = 197 bits (500), Expect = 3e-50
Identities = 107/283 (37%), Positives = 157/283 (55%), Gaps = 6/283 (2%)
Frame = +3
Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
P+SL +F T +SRP G P F Y++D F +DS+ + PR PW + EG E W+
Sbjct: 27 PYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETG--KAIPRYPWSQMEGIEDWE 84
Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPD---GLFLRGYSQFAY 473
+E+++ K + V L ++ YY E GSHT Q M+GC++ + G F R +AY
Sbjct: 85 KESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCELQNNKNSGAFWR----YAY 139
Query: 474 DGADYIALNEDLRSWTAADTAAQITKRKREAADA-AEQMRSYLEGACVEGLQKYLEMGKD 650
DG ++I N+++ +W D AA TK+K EA + ++ ++YLE C LQ+YLE GK
Sbjct: 140 DGRNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKT 199
Query: 651 TLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSG 830
L R EPP +T H + + TL+CW GFYP+EI L W + D + PSG
Sbjct: 200 YLDRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSG 258
Query: 831 DGTFQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPPQ 953
+ T+Q W + P + SY+C V+H L +PLT+ WD Q
Sbjct: 259 NNTYQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301
>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
(FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
transporter, alpha chain) [Canis familiaris].
Length = 354
Score = 138 bits (347), Expect = 2e-32
Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 2/276 (0%)
Frame = +3
Query: 129 SLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWI-EKEGQEYWDR 305
SL Y TAVS P G P F G++ Q++ +++ + EP W+ E + YW++
Sbjct: 28 SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVSWYWEK 85
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ET + + L L + G +TLQ + GC++GPD + ++FA +G D
Sbjct: 86 ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138
Query: 486 YIALNEDLRSWTAADTAAQ-ITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
++ + L +W + ++KR + A A + R++L +C + L +LE G+ L+
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
EPP + P S L C A FYP E+ L + R G + P+GDG+F
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
W++L V G+E Y C VQH GL +PLT+ + P
Sbjct: 257 HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTVELESP 292
>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 1 [Canis familiaris].
Length = 357
Score = 70.9 bits (172), Expect = 3e-12
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
Frame = +3
Query: 402 LQSMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAA----DTAAQITKRKREAA 569
+Q GC++ F G+ ++AY G D I SW + A Q + +
Sbjct: 114 VQMEIGCELRIGEPF-SGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 170
Query: 570 DAAEQMRSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 746
+ E + G C + L++GK LQR P+ ++ PS G + L C GFY
Sbjct: 171 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 230
Query: 747 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 923
PK + + W R G+ + Q + + P DGT+ +L V E +C V+H L +
Sbjct: 231 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 289
Query: 924 PLTLRWDPP 950
+ L W+ P
Sbjct: 290 DMVLHWEQP 298
>ref|XP_860822.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 2 [Canis familiaris].
Length = 352
Score = 70.9 bits (172), Expect = 3e-12
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
Frame = +3
Query: 402 LQSMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAA----DTAAQITKRKREAA 569
+Q GC++ F G+ ++AY G D I SW + A Q + +
Sbjct: 109 VQMEIGCELRIGEPF-SGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 165
Query: 570 DAAEQMRSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 746
+ E + G C + L++GK LQR P+ ++ PS G + L C GFY
Sbjct: 166 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 225
Query: 747 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 923
PK + + W R G+ + Q + + P DGT+ +L V E +C V+H L +
Sbjct: 226 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 284
Query: 924 PLTLRWDPP 950
+ L W+ P
Sbjct: 285 DMVLHWEQP 293
>ref|NP_001122309.1| T-cell surface glycoprotein CD1a [Canis lupus familiaris].
Length = 340
Score = 68.9 bits (167), Expect = 1e-11
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
Frame = +3
Query: 453 GYSQFAYDGADYIALNEDLRSWTAADT----AAQITKRKREAADAAEQMRSYLEGACVEG 620
G+ Q AY G+D ++ +SW + A Q+ K + ++ S++ C
Sbjct: 130 GFMQIAYQGSDLVSFQN--KSWWPSPKGGRRAQQVCKLLNQYHVVNLRIHSHINDFCPHY 187
Query: 621 LQKYLEMGKDTLQRAEPPKTHVTRHPS-SDLGVTLRCWALGFYPKEISLTWQREGQDQSQ 797
L L+ GK L R P+ ++ PS S + L C GFYPK + +TW R G+ + Q
Sbjct: 188 LLGLLDAGKGDLHRQVRPEAWLSAGPSPSSDHLQLVCHVSGFYPKPVWVTWMR-GEQEQQ 246
Query: 798 DMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QEPLTLRWDPP 950
+ P DGT+ +L V E +C V+H L + + L W+ P
Sbjct: 247 GSWRGDVLPHADGTWYLQVSLDVKAKEVAGLSCRVRHSSLGGQDMVLHWERP 298
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,660,591
Number of extensions: 1981293
Number of successful extensions: 12882
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 12534
Number of HSP's successfully gapped: 28
Length of query: 508
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 401
Effective length of database: 15,307,552
Effective search space: 6138328352
Effective search space used: 6138328352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000601
(1525 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 484 e-137
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 482 e-136
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 481 e-136
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 478 e-135
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 476 e-134
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 456 e-128
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 436 e-122
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 427 e-119
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 426 e-119
Alignment gi|NP_001091948.1| HLA class I histocompatibility antigen, alph... 259 5e-69
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 484 bits (1247), Expect = e-137
Identities = 242/361 (67%), Positives = 269/361 (74%), Gaps = 3/361 (0%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+R+M PR HS+RYFDTAVSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDA +PR EPRAPW+E+EG EYWDRETQ K AQ RV+L NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
MYGCD+GPDG LRGY Q AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA AAEQ+
Sbjct: 121 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R+YLEG CVE L++YLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 948 ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1118
P R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360
Query: 1119 L 1121
L
Sbjct: 361 L 361
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 482 bits (1240), Expect = e-136
Identities = 242/359 (67%), Positives = 267/359 (74%), Gaps = 2/359 (0%)
Frame = +3
Query: 54 IMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDS 233
+M PR HS+RYF T+VSRP RG+PRFI VGYVDDTQFV FDS
Sbjct: 3 VMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDS 62
Query: 234 DAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSM 413
DA +PR EPRAPWIE+EG EYWDR TQI K AQT R +L NLRGYYNQSEAGSHTLQSM
Sbjct: 63 DAASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSM 122
Query: 414 YGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRS 593
YGCDVGPDG LRG+ Q+AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA AEQ R+
Sbjct: 123 YGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRA 182
Query: 594 YLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQ 773
YLEG CVE L++YLE GKD L+RA+PPKTHVT HP SD TLRCWALGFYP EI+LTWQ
Sbjct: 183 YLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQ 242
Query: 774 REGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-- 947
R+G+DQ+QD ELVETRP+GD TFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P
Sbjct: 243 RDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSS 302
Query: 948 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1124
R+K SG KGGSY+QAA SDSAQGSDVSLT
Sbjct: 303 QSTVPIVGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSLT 361
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 481 bits (1238), Expect = e-136
Identities = 241/361 (66%), Positives = 268/361 (74%), Gaps = 3/361 (0%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+R+M PR HS+RYFDTAVSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDA +PR EPRAPW+E+EG EYWDRETQ K AQ RV+L NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
M GCD+GPDG LRGY Q AYDG DYIALNEDLRSWTAADTAAQIT+RK EAA AAEQ+
Sbjct: 121 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R+YLEG CVE L++YLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 948 ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1118
P R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360
Query: 1119 L 1121
L
Sbjct: 361 L 361
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 478 bits (1230), Expect = e-135
Identities = 237/361 (65%), Positives = 265/361 (73%), Gaps = 2/361 (0%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+ +M PR HS+RYF T+VSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDA + +MEPRAPWIE+EG EYWD+ET+ K ++QT R NL LRGYYNQSE GSHT+Q
Sbjct: 61 DSDAASQKMEPRAPWIEQEGPEYWDQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
MYGCDVGPDG FLRGY Q AYDG DYIALNEDLRSWTAAD AAQITKRK EA AAEQ
Sbjct: 121 IMYGCDVGPDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQR 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R YLEG CV+GL++YLE GK+TLQR +PPKTH+T HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RVYLEGRCVDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD- 944
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 300
Query: 945 -PPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
WR+K S KGGSYTQAA SDSAQGSDVSL
Sbjct: 301 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 360
Query: 1122 T 1124
T
Sbjct: 361 T 361
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 476 bits (1226), Expect = e-134
Identities = 237/361 (65%), Positives = 266/361 (73%), Gaps = 2/361 (0%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+ +M PR HS+RYF T+VSRP RG+PRFI VGYVDDTQFV F
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDA + RMEPRAPWIE+EG EYWD+ET+ K +QT RV+L LRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
MYGCDVG DG FLRGY Q AYDG DYIALNEDLRSWTAAD AAQITKRK EAA AEQ+
Sbjct: 121 IMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQL 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
R+YL+G CVE L++YLE GK+TLQR +PPKTH+T HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD- 944
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEL 300
Query: 945 -PPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
WR+K S KGGSYTQAA SDSAQGSDVSL
Sbjct: 301 SSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSL 360
Query: 1122 T 1124
T
Sbjct: 361 T 361
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
sapiens].
Length = 358
Score = 456 bits (1174), Expect = e-128
Identities = 219/331 (66%), Positives = 250/331 (75%), Gaps = 2/331 (0%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSL+YF T+VSRP RG+PRFI VGYVDDTQFV FD+DA +PRM PRAPW+E+EG EYWDR
Sbjct: 24 HSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDR 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ET+ ++D AQ +RVNL LRGYYNQSEAGSHTLQ M+GC++GPDG FLRGY QFAYDG D
Sbjct: 84 ETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
Y+ LNEDLRSWTA DTAAQI+++K A AE R+YLE CVE L KYLE GK+TL
Sbjct: 144 YLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHL 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
EPPKTHVT HP SD TLRCWALGFYP EI+LTWQ++G+ +QD ELVETRP+GDGTFQ
Sbjct: 204 EPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ--XXXXXXXXXXXXXXXXXXXXXX 1019
KWAA+VVP GEEQ YTCHVQHEGL EP+TLRW P
Sbjct: 264 KWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAV 323
Query: 1020 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSD 1112
WRKK SG KGGSY++A SDSAQGS+
Sbjct: 324 VAAVIWRKKSSGGKGGSYSKAEWSDSAQGSE 354
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
[Homo sapiens].
Length = 338
Score = 436 bits (1122), Expect = e-122
Identities = 207/296 (69%), Positives = 234/296 (79%)
Frame = +3
Query: 54 IMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDS 233
+M PR HS+RYF AVSRP RG+PRFI +GYVDDTQFV FDS
Sbjct: 3 VMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDS 62
Query: 234 DAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSM 413
D+ PRMEPRAPW+E+EG EYW+ ET+ +K +AQT R+NL LRGYYNQSEA SHTLQ M
Sbjct: 63 DSACPRMEPRAPWVEQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWM 122
Query: 414 YGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRS 593
GCD+G DG LRGY Q+AYDG DY+ALNEDLRSWTAADTAAQI+KRK EAA+ AEQ R+
Sbjct: 123 IGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRA 182
Query: 594 YLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQ 773
YLEG CVE L +YLE GK+ LQRA+PPKTHVT HP D TLRCWALGFYP EI LTWQ
Sbjct: 183 YLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQ 242
Query: 774 REGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 941
R+G+DQ+QD+ELVETRP+GDGTFQKWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 243 RDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 427 bits (1099), Expect = e-119
Identities = 210/330 (63%), Positives = 240/330 (72%), Gaps = 2/330 (0%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF TAVSRP RG+PR+I V YVDDTQF+ FDSDA PRMEPR PW+E+EG +YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
T +K NAQT RV L NL YNQSEAGSHTLQ M GCD+GPDG LRGY Q AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YI+LNEDLRSWTAADT AQIT+R EA + AE+ R+YLEG C+E L++YLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 1019
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323
Query: 1020 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1109
WRKK S GSY+QAA G+
Sbjct: 324 VAAVMWRKKSSDRNRGSYSQAAAYSVVSGN 353
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 426 bits (1096), Expect = e-119
Identities = 209/322 (64%), Positives = 238/322 (73%), Gaps = 2/322 (0%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF TAVSRP RG+PR+I V YVDDTQF+ FDSDA PRMEPR PW+E+EG +YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
T +K NAQT RV L NL YNQSEAGSHTLQ M GCD+GPDG LRGY Q AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YI+LNEDLRSWTAADT AQIT+R EA + AE+ R+YLEG C+E L++YLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 1019
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323
Query: 1020 XXXXXWRKKRSGEKGGSYTQAA 1085
WRKK S GSY+QAA
Sbjct: 324 VAAVMWRKKSSDRNRGSYSQAA 345
>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
precursor [Homo sapiens].
Length = 254
Score = 259 bits (662), Expect = 5e-69
Identities = 127/181 (70%), Positives = 145/181 (80%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF TAVSRP RG+PR+I V YVDDTQF+ FDSDA PRMEPR PW+E+EG +YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
T +K NAQT RV L NL YNQSEAGSHTLQ M GCD+GPDG LRGY Q AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YI+LNEDLRSWTAADT AQIT+R EA + AE+ R+YLEG C+E L++YLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 666 E 668
E
Sbjct: 204 E 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,961,336
Number of extensions: 1905080
Number of successful extensions: 11754
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 11458
Number of HSP's successfully gapped: 78
Length of query: 508
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 401
Effective length of database: 14,770,016
Effective search space: 5922776416
Effective search space used: 5922776416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000601
(1525 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp... 426 e-119
Alignment gi|NP_001020379.1| MHC class I family member [Mus musculus]. 423 e-118
Alignment gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al... 422 e-118
Alignment gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus]. 419 e-117
Alignment gi|XP_001003852.3| PREDICTED: h-2 class I histocompatibility an... 419 e-117
Alignment gi|XP_003085178.1| PREDICTED: h-2 class I histocompatibility an... 419 e-117
Alignment gi|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus mus... 417 e-116
Alignment gi|XP_003086967.1| PREDICTED: h-2 class I histocompatibility an... 416 e-116
Alignment gi|XP_979787.3| PREDICTED: h-2 class I histocompatibility antig... 415 e-116
Alignment gi|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus ... 415 e-116
>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
[Mus musculus].
Length = 325
Score = 426 bits (1094), Expect = e-119
Identities = 197/275 (71%), Positives = 231/275 (84%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HS+RYF+T+VSRP G+PRFI VGYVDDTQFV FDSDA PRMEPRAPW+E+EG EYW+R
Sbjct: 27 HSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYWER 86
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQ +K N Q++ V+L L GYYNQSE+GSHT+Q MYGC VG DG FLRGY Q+AYDG D
Sbjct: 87 ETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRD 146
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDL++WTAAD AA IT+RK E A AAE R+YLE CVE L +YLE+GK+TL R
Sbjct: 147 YIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRT 206
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPKTHVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 266
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+PP
Sbjct: 267 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPP 301
>ref|NP_001020379.1| MHC class I family member [Mus musculus].
Length = 382
Score = 423 bits (1087), Expect = e-118
Identities = 206/334 (61%), Positives = 243/334 (72%), Gaps = 2/334 (0%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HS+RYF+TAVSRP G+PRFI VGYVDDTQFV FD DA NPR EP APW+E+EG EYW+R
Sbjct: 24 HSMRYFETAVSRPGLGEPRFISVGYVDDTQFVRFDGDAENPRYEPWAPWMEQEGPEYWER 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQI+KDN Q++R +L NL YYNQSE GSHT Q + GCD+G DG LRGY QFAY+G D
Sbjct: 84 ETQIAKDNVQSFRGSLRNLLLYYNQSEGGSHTFQRLSGCDLGSDGRLLRGYLQFAYEGQD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDL++WTAAD AA IT+RK E A AAE ++YLEG CVE L++YLE GK+TL R
Sbjct: 144 YIALNEDLKTWTAADMAALITRRKWEQAGAAELYKAYLEGECVEWLRRYLERGKETLLRT 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HVT HP + VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP--QXXXXXXXXXXXXXXXXXXXXXX 1019
KWA++VVP G+EQ YTCHV HEGL EPLTLRW+PP
Sbjct: 264 KWASVVVPLGKEQKYTCHVHHEGLPEPLTLRWEPPPSTVSNMIIIEVLIVLGAVINIGAM 323
Query: 1020 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
K++ G KGG Y A GS+S GS + L
Sbjct: 324 VAFVLKSKRKIGGKGGVYALAGGSNSIHGSALFL 357
>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
[Mus musculus].
Length = 357
Score = 422 bits (1086), Expect = e-118
Identities = 198/276 (71%), Positives = 225/276 (81%)
Frame = +3
Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
PHSLRYF TAVSRP G+PRFI VGYVDDTQFV FDSDA NPRMEPRA WIE+EG EYW+
Sbjct: 22 PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81
Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
RET ++D + +RVNL L GYYNQS SHTLQ MYGCDVGPDG LRGY Q AYDG
Sbjct: 82 RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DYI+LNEDLRSWTA D A+QI+K K EA D A Q R+YL+G CVE L +YL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
++PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+PP
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEPP 297
>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
Length = 368
Score = 419 bits (1078), Expect = e-117
Identities = 203/335 (60%), Positives = 246/335 (73%), Gaps = 2/335 (0%)
Frame = +3
Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
PHS+RYF+TAVSRP G+P FI VGYVDDTQFV FD DA NPRMEPRAPW+E+EG EYW+
Sbjct: 27 PHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYWE 86
Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
RETQI+K + Q ++ +L NL YYNQS GSHT Q MYGCD+G DG LRGY QFAYDG+
Sbjct: 87 RETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDGS 146
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DYIALN+DL++WTAAD AAQIT+R+ E AE +R+YLE C+E L++YLE+GK+TL R
Sbjct: 147 DYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLLR 206
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTF
Sbjct: 207 TDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 266
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-PQXXXXXXXXXXXXXXXXXXXXXX 1019
QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P P
Sbjct: 267 QKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPRPSRDSNMVIIAVLVVLGVVIIIGA 326
Query: 1020 XXXXXWRKKRS-GEKGGSYTQAAGSDSAQGSDVSL 1121
+ +R G K +Y A GS+S QGS + L
Sbjct: 327 MVPFVLKSRRKIGGKEENYALAGGSNSVQGSALFL 361
>ref|XP_001003852.3| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
isoform 9 [Mus musculus].
Length = 385
Score = 419 bits (1077), Expect = e-117
Identities = 202/337 (59%), Positives = 242/337 (71%), Gaps = 5/337 (1%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HS+RYF+TA+SRP +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 24 HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQI+K N Q++R +L + YYNQSE G HT Q ++GCDVG DG LRGY QFAYDG D
Sbjct: 84 ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDL +WTAAD AA IT+RK E A AAE ++YLEG CVE L++YL++GK+TL R
Sbjct: 144 YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP-----QXXXXXXXXXXXXXXXXXXX 1010
KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW+PP
Sbjct: 264 KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWEPPPSTDSNMVIMAPMAVLVVLGAVIII 323
Query: 1011 XXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
++ G KGG Y A GS QGSD+ L
Sbjct: 324 GAMVSFVLKSRRTIGGKGGDYAPAGGSKGGQGSDLFL 360
>ref|XP_003085178.1| PREDICTED: h-2 class I histocompatibility antigen, K-D alpha chain
[Mus musculus].
Length = 413
Score = 419 bits (1077), Expect = e-117
Identities = 202/337 (59%), Positives = 242/337 (71%), Gaps = 5/337 (1%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HS+RYF+TA+SRP +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 52 HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 111
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQI+K N Q++R +L + YYNQSE G HT Q ++GCDVG DG LRGY QFAYDG D
Sbjct: 112 ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 171
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDL +WTAAD AA IT+RK E A AAE ++YLEG CVE L++YL++GK+TL R
Sbjct: 172 YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 231
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QD+ELVETRP+GDGTFQ
Sbjct: 232 DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 291
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP-----QXXXXXXXXXXXXXXXXXXX 1010
KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW+PP
Sbjct: 292 KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWEPPPSTDSNMVIMAPMAVLVVLGAVIII 351
Query: 1011 XXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
++ G KGG Y A GS QGSD+ L
Sbjct: 352 GAMVSFVLKSRRTIGGKGGDYAPAGGSKGGQGSDLFL 388
>ref|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus musculus].
Length = 360
Score = 417 bits (1071), Expect = e-116
Identities = 204/336 (60%), Positives = 240/336 (71%), Gaps = 2/336 (0%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRYF TAVSRP G+PRFI VGYVDDTQFV FDSDA NPRMEPRAPW+E+EG EYW+R
Sbjct: 24 HSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRAPWMEQEGPEYWER 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
TQ+SK+N Q++RV+L YYNQS+ GSHTLQ + GCD+GPDG LRGY Q AYDG D
Sbjct: 84 NTQVSKENEQSFRVSLGTALSYYNQSKGGSHTLQWLVGCDLGPDGSLLRGYEQSAYDGRD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
Y+ALNEDL +WTAAD AA T+ K E A AE+ R+YLE C+ L++YLE+GK+TL
Sbjct: 144 YLALNEDLITWTAADLAALKTRSKLEQAGLAEKRRAYLEVDCLTWLRRYLELGKETLLHT 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HVT HPSS VTLRCWALGFYP +I+LTWQ G+D +QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPSSQGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPSGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWA+++VP GEE YTCHV+HEGL EPLTLRW+PP
Sbjct: 264 KWASVMVPFGEEPRYTCHVEHEGLPEPLTLRWEPPPSTDSYMVIIAVLVVLGAVIIIGAV 323
Query: 1026 XXXWRK--KRSGEKGGSYTQAAGSDSAQGSDVSLTQ 1127
K + +G K Y Q G DS Q SD+SL +
Sbjct: 324 VAFVMKRGRNTGGKVRDYAQDPGRDSPQSSDISLLE 359
>ref|XP_003086967.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain
[Mus musculus].
Length = 382
Score = 416 bits (1068), Expect = e-116
Identities = 202/334 (60%), Positives = 239/334 (71%), Gaps = 2/334 (0%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HS+RYF+TA+SRP +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 24 HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQI+K N Q++R +L + YYNQSE G HT Q ++GCDVG DG LRGY QFAYDG D
Sbjct: 84 ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDL +WTAAD AA IT+RK E A AAE ++YLEG CVE L++YL++GK+TL R
Sbjct: 144 YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW
Sbjct: 264 KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKESYTVPSHQPMAVLVVLGAVIIIGAM 323
Query: 1026 XXXWRKKRS--GEKGGSYTQAAGSDSAQGSDVSL 1121
K R G KGG Y A GS QGSD+ L
Sbjct: 324 VSFVLKSRRTIGGKGGDYAPAGGSKGGQGSDLFL 357
>ref|XP_979787.3| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha chain
isoform 7 [Mus musculus].
Length = 379
Score = 415 bits (1067), Expect = e-116
Identities = 201/332 (60%), Positives = 239/332 (71%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HS+RYF+TA+SRP +PRFI VGYVDDTQFV FD DA NPR EPRAPW+E EG+EYW+R
Sbjct: 24 HSMRYFETALSRPGLREPRFISVGYVDDTQFVRFDGDAENPRYEPRAPWMEHEGREYWER 83
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQI+K N Q++R +L + YYNQSE G HT Q ++GCDVG DG LRGY QFAYDG D
Sbjct: 84 ETQIAKRNEQSFRGSLRTAQRYYNQSEGGLHTFQLLFGCDVGSDGRLLRGYLQFAYDGRD 143
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YIALNEDL +WTAAD AA IT+RK E A AAE ++YLEG CVE L++YL++GK+TL R
Sbjct: 144 YIALNEDLNTWTAADLAALITRRKWEQAGAAEHYKAYLEGECVESLRRYLQLGKETLLRT 203
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QD+ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSEGDVTLRCWALGFYPADITLTWQLNGEELTQDIELVETRPAGDGTFQ 263
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAA+VVP G+EQ+YTCHV+HEGL E LTLRW
Sbjct: 264 KWAAVVVPLGKEQNYTCHVEHEGLPEHLTLRWGKESPSHQPMAVLVVLGAVIIIGAMVSF 323
Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1121
R+ G KGG Y A GS QGSD+ L
Sbjct: 324 VLKSRRTIGG-KGGDYAPAGGSKGGQGSDLFL 354
>ref|NP_001137161.1| histocompatibility 2, Q region locus 4 [Mus musculus].
Length = 354
Score = 415 bits (1066), Expect = e-116
Identities = 193/276 (69%), Positives = 225/276 (81%)
Frame = +3
Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
PH L YF T+VSRP G+PRFI VGYVD+T+FV FDSDA NPR EPRAPW+E+EG EYW+
Sbjct: 51 PHLLSYFYTSVSRPGLGEPRFISVGYVDNTEFVRFDSDAENPRYEPRAPWMEQEGPEYWE 110
Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
RETQ +K N Q +RVNL L YYNQS GSHT+Q + GC+VG DG LRGY QFAYDG
Sbjct: 111 RETQKAKGNEQIFRVNLRTLLSYYNQSAGGSHTIQVISGCEVGSDGRLLRGYQQFAYDGR 170
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DYIALNEDL++WTAAD AAQIT+RK E A A E+ ++YLEGACV+ L++YLE+GK+TL R
Sbjct: 171 DYIALNEDLKTWTAADMAAQITRRKWEQAGATEKSKAYLEGACVQSLRRYLELGKETLLR 230
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
+PPK HVT H SD VTLRCWALGFYP I LTWQ G++ +QDMELVETRPSGDGTF
Sbjct: 231 TDPPKAHVTCHHRSDGDVTLRCWALGFYPANIILTWQLNGEELTQDMELVETRPSGDGTF 290
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+PP
Sbjct: 291 QKWASVVVPLGKEQNYTCHVHHEGLPEPLTLRWEPP 326
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,814,495
Number of extensions: 1554786
Number of successful extensions: 9407
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 9132
Number of HSP's successfully gapped: 139
Length of query: 508
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 402
Effective length of database: 12,433,743
Effective search space: 4998364686
Effective search space used: 4998364686
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000601
(1525 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa]. 599 e-171
Alignment gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa]. 573 e-164
Alignment gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a... 561 e-160
Alignment gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a... 556 e-158
Alignment gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa]. 556 e-158
Alignment gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa]. 541 e-154
Alignment gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa]. 459 e-129
Alignment gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa]. 445 e-125
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 411 e-115
Alignment gi|XP_003361021.1| PREDICTED: class I histocompatibility antige... 256 2e-68
>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
Length = 361
Score = 599 bits (1545), Expect = e-171
Identities = 295/361 (81%), Positives = 303/361 (83%)
Frame = +3
Query: 57 MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
MGPR PHSLRYFDTAVSRPDRGKPRFI VGYVDDTQFV FDSD
Sbjct: 1 MGPRALFLLLSGTLALTGTREGPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSD 60
Query: 237 APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
APNPRMEPRAPWIE+EGQEYWD ET+ + +AQT+RVNLNNLRGYYNQSEAGSHTLQSMY
Sbjct: 61 APNPRMEPRAPWIEQEGQEYWDEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMY 120
Query: 417 GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
GCDVGPD LFLRGYSQ AYDGADYIALNEDLRSWTAADTAAQITKRK EAAD AEQMRSY
Sbjct: 121 GCDVGPDWLFLRGYSQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSY 180
Query: 597 LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
LEGACVE LQKYL+MG +TLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR
Sbjct: 181 LEGACVEWLQKYLQMGNNTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 240
Query: 777 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ
Sbjct: 241 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQP 300
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPR 1136
WRKKR GEKGGSYTQAAGSDSAQGSDVSLT+DPR
Sbjct: 301 PVPIVGIIVGLVLVLVAGAVVAGVVIWRKKRPGEKGGSYTQAAGSDSAQGSDVSLTKDPR 360
Query: 1137 V 1139
V
Sbjct: 361 V 361
>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
Length = 364
Score = 573 bits (1478), Expect = e-164
Identities = 284/364 (78%), Positives = 295/364 (81%)
Frame = +3
Query: 48 LRIMGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWF 227
+R+ GP+ PHSL YF TAVSRPDRG RFI VGYVDDTQFV F
Sbjct: 1 MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60
Query: 228 DSDAPNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQ 407
DSDAPNPRMEPRAPWI++EGQ+YWDRET+ +AQT RVNL LRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120
Query: 408 SMYGCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQM 587
MYGCDVGPDGL LRGY Q AYDGADYIALNEDLRSWTAADTAAQITKRK EAADAAE
Sbjct: 121 VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180
Query: 588 RSYLEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 767
RSYL+G CVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181 RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240
Query: 768 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 947
WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300
Query: 948 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQ 1127
PQ WRKKRSGEKGGSYTQAAGSDSAQGSDVSLT+
Sbjct: 301 PQPPIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK 360
Query: 1128 DPRV 1139
DPRV
Sbjct: 361 DPRV 364
>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 561 bits (1447), Expect = e-160
Identities = 276/339 (81%), Positives = 285/339 (84%)
Frame = +3
Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
PHSL YF TAVSRPDRG RF VGYVDDTQFV FDSDAPN +MEPRA WI++EG EYWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYWD 82
Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
RETQISK+ AQTYRV L LRGYYNQSEAGSHTLQ MYGC +GPDGL LRGY Q AYDGA
Sbjct: 83 RETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDGA 142
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DY+ALNEDLRSWTAADTAAQITKRK EAAD AE RSYL+G CVE L+KYLEMGKDTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQR 202
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 1022
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQTPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1023 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
WRKKRSGEKGGSYTQAAGSDS QGSDVSLT+ PRV
Sbjct: 323 GVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361
>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 556 bits (1433), Expect = e-158
Identities = 272/339 (80%), Positives = 284/339 (83%)
Frame = +3
Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
PHSL YF TAVSRPDRG RFI VGYVDDTQFV FD+ APNPRMEPR PWI++EGQ+YWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 82
Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
ET+ KDNAQTY V LN LRGYYNQSEAGSHTLQSM+GC +GPDGL L GY Q AYDGA
Sbjct: 83 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 142
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DYIALNEDLRSWTAAD AAQI+KRK EAADAAE RSYL+G CVE L++YLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 202
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 1022
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1023 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
WRK RSGEKGGSYTQAAGSDS QGSDVSLT+DPRV
Sbjct: 323 GVVIWRKTRSGEKGGSYTQAAGSDSDQGSDVSLTKDPRV 361
>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
Length = 361
Score = 556 bits (1432), Expect = e-158
Identities = 274/339 (80%), Positives = 285/339 (84%)
Frame = +3
Query: 123 PHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWD 302
PHSL YF TAVSRPD G RFIEVGYVDDTQFV FDSDA NPRMEPRAPWIEKEGQ+YWD
Sbjct: 23 PHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYWD 82
Query: 303 RETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGA 482
ET+ K+ AQ RV+L LRGYYNQSEAGSHTLQSM+GC +GPDGL LRGY Q AYDGA
Sbjct: 83 EETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDGA 142
Query: 483 DYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
DYIALNEDLRSWTAADTAAQITKRK EAAD AEQ RSYL+G CVE L++YLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQR 202
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
A+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 ADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 1022
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1023 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPRV 1139
WRKKRSGEKGGSYTQAAGSDS QGSDVSLT+ PRV
Sbjct: 323 GVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361
>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
Length = 361
Score = 541 bits (1394), Expect = e-154
Identities = 271/361 (75%), Positives = 282/361 (78%)
Frame = +3
Query: 57 MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
MGPR PHSL Y T+VSRP RG+PRFI VG VDDT V FDSD
Sbjct: 1 MGPRGLFLLLSGALALTGTRAGPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSD 60
Query: 237 APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
A PR EPRA WIE+EG EYWD ET+ISKDNAQT R NLN LRGYYNQSEA SHT+QS++
Sbjct: 61 ARKPRKEPRAWWIEQEGPEYWDEETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLF 120
Query: 417 GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
GCDVGPD L LR Y Q AYDGADY+ALNEDLRSWTAADTAAQITKRK E A+ AEQ RSY
Sbjct: 121 GCDVGPDRLLLRRYRQDAYDGADYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSY 180
Query: 597 LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
L+G CVEGLQKYLEMG+DTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR
Sbjct: 181 LQGLCVEGLQKYLEMGEDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 240
Query: 777 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 241 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQT 300
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTQDPR 1136
WR KRSGEKGGSYTQAAGSDSAQGSDV L DPR
Sbjct: 301 PVPMVGIIVGLVLVLVAGAMVAGVVIWRLKRSGEKGGSYTQAAGSDSAQGSDVFLPMDPR 360
Query: 1137 V 1139
V
Sbjct: 361 V 361
>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
Length = 401
Score = 459 bits (1180), Expect = e-129
Identities = 231/353 (65%), Positives = 253/353 (71%)
Frame = +3
Query: 57 MGPRXXXXXXXXXXXXXXXXXXPHSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSD 236
MGP+ PHSLRYF TAVSRP R PRF VGYVDDTQFV FDS+
Sbjct: 1 MGPQALLLLLSGTLVLTQPWARPHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSN 60
Query: 237 APNPRMEPRAPWIEKEGQEYWDRETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMY 416
APNPR EPR PW+E EG E DR T+I KD +Q ++V+LN LRGYYNQSEAGSHT Q +
Sbjct: 61 APNPREEPRTPWVELEGPECCDRNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLC 120
Query: 417 GCDVGPDGLFLRGYSQFAYDGADYIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSY 596
GC V DG LRGYSQFAYDGADYI LNEDLRSWTA AAQIT+RK E AEQ R+Y
Sbjct: 121 GCYVARDGRLLRGYSQFAYDGADYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAY 180
Query: 597 LEGACVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQR 776
LE ACV+ L +YL GK+TLQR++PPKTHVTRHPSSD VTLRCWALGFYPKEISLTWQ+
Sbjct: 181 LEVACVQSLHRYLANGKETLQRSDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQ 240
Query: 777 EGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQX 956
EGQDQSQD+E+VETRPSGDGTF+KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ
Sbjct: 241 EGQDQSQDVEVVETRPSGDGTFRKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQP 300
Query: 957 XXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDV 1115
WRKK SG K Y QA S ++ S V
Sbjct: 301 PVPIVGIIVGLVLVLVTGAVVTGVVIWRKKCSGGKVRKYQQAERSSRSENSGV 353
>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
Length = 355
Score = 445 bits (1144), Expect = e-125
Identities = 216/331 (65%), Positives = 252/331 (76%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HS+RYF T VSRP G+PR++EVGYVDDTQFV FDS+A NPRMEPRAPW+E+EGQEYWD
Sbjct: 22 HSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDE 81
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ETQ KD Q +R NL LRGYYNQSE GSHT Q YGC+ G G L + Q+AYDG D
Sbjct: 82 ETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDGED 141
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YI LNEDL SWTAAD AA++T+RK + + A E+ +SYLEG CVE L++YLE G++ LQRA
Sbjct: 142 YITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRA 201
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
+PPK +VT HPSSD VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGTFQ
Sbjct: 202 DPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQ 261
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P +
Sbjct: 262 KWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR----LSAITIVGIVAGLVLLGAVI 317
Query: 1026 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1118
W+K+ SG K GSY+QA ++S + SDVS
Sbjct: 318 TVIWKKRFSGRKRGSYSQAPSNNSVENSDVS 348
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 411 bits (1056), Expect = e-115
Identities = 202/320 (63%), Positives = 232/320 (72%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRY VSRP G + VG++DDTQFV F SDA NPR+EPRAPW+E+EG+EYWDR
Sbjct: 52 HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 111
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
+T I+K++++ R NL + G +N S++ SH+ + GCDVG +G LRGY QF+YDG D
Sbjct: 112 QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDD 171
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADAAEQMRSYLEGACVEGLQKYLEMGKDTLQRA 665
YI LNEDLRSWTA T AQI +RK EA AEQ R+YLE CVE L+KYLE GKD LQRA
Sbjct: 172 YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 231
Query: 666 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 845
PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 232 VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 291
Query: 846 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1025
KWAALVVP GEEQSYTC VQHEGLQEPLTLRW+PP
Sbjct: 292 KWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEPP---PLSLNLIMICIAVSVLVVTVLG 348
Query: 1026 XXXWRKKRSGEKGGSYTQAA 1085
WRK+ SG G+Y QAA
Sbjct: 349 TVIWRKRNSGGNRGNYVQAA 368
>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
alpha chain-like [Sus scrofa].
Length = 374
Score = 256 bits (654), Expect = 2e-68
Identities = 127/276 (46%), Positives = 175/276 (63%), Gaps = 1/276 (0%)
Frame = +3
Query: 126 HSLRYFDTAVSRPDRGKPRFIEVGYVDDTQFVWFDSDAPNPRMEPRAPWIEKEGQEYWDR 305
HSLRY A+S P G P+F+ VGYVDD F+ +DS + EP+APW+ +YW++
Sbjct: 42 HSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYWEK 99
Query: 306 ETQISKDNAQTYRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDGLFLRGYSQFAYDGAD 485
ET+ + A+ +V + + GYYNQS +G H+ Q M+GC++ DG G+ QF +DG D
Sbjct: 100 ETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDG-HSTGFWQFGFDGQD 157
Query: 486 YIALNEDLRSWTAADTAAQITKRKREAADA-AEQMRSYLEGACVEGLQKYLEMGKDTLQR 662
+++L+ + SW +A+ A TKR E AE ++Y+EG C+ L+KYLE+G R
Sbjct: 158 HLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSR 217
Query: 663 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 842
EPP VT+H + D G TLRCWALGFYP++ISL+W ++ + E VETRPSGDGT+
Sbjct: 218 REPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDGTY 277
Query: 843 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 950
Q W A VP GEE YTCHVQH L LT+ W+ P
Sbjct: 278 QTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWESP 313
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,369,876
Number of extensions: 1238589
Number of successful extensions: 7834
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 7657
Number of HSP's successfully gapped: 37
Length of query: 508
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 405
Effective length of database: 8,779,541
Effective search space: 3555714105
Effective search space used: 3555714105
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000601
(1525 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 569 e-159
gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 333 2e-88
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22 170 1e-39
Sscrofa_ChrX 94 3e-16
Sscrofa_Chr08 88 2e-14
Sscrofa_Chr03 86 7e-14
Sscrofa_Chr13 82 1e-12
Sscrofa_Chr10 82 1e-12
Sscrofa_Chr14 80 4e-12
Sscrofa_Chr18 76 6e-11
>Sscrofa_Chr07
|| Length = 134764511
Score = 569 bits (287), Expect = e-159
Identities = 366/391 (93%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
|||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct: 24642186 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 24642127
Query: 1195 gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
|||||||| || |||||||||||| |||||||||||||||||||||| |||| |||||||
Sbjct: 24642126 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 24642067
Query: 1255 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24642066 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 24642007
Query: 1315 caccctgacctgtgttctctttcctgatccactttccagctccaacaaggttggggggag 1374
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24642006 caccctgacctgtgttctctttcctgatccactttccagctccaac-aggttggggggag 24641948
Query: 1375 gcaggcggcaatggaccatctccatccttatactaaattcattgccctgactggtgactg 1434
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 24641947 gcaggcggcaatggaccatctccatccttatgctaagttcattgccctgactggtgactg 24641888
Query: 1435 cggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttcca 1494
||||||||| | || ||||| |||||| | ||| || |||||||||| ||||||||||||
Sbjct: 24641887 cggggagccgaggaaacacaggaggccaaggaagggaactagcctgacggcacagttcca 24641828
Query: 1495 aaggcagggttccctaccgagggaaaagagc 1525
||||||||||||| ||| ||||||||||||
Sbjct: 24641827 aaggcagggttcctaaccaagggaaaagagc 24641797
Score = 537 bits (271), Expect = e-150
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219
Score = 537 bits (271), Expect = e-150
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
|||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600
Score = 521 bits (263), Expect = e-145
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908
Score = 513 bits (259), Expect = e-143
Identities = 275/279 (98%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996
Score = 513 bits (259), Expect = e-143
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123
Score = 462 bits (233), Expect = e-127
Identities = 266/277 (96%)
Strand = Plus / Minus
Query: 390 gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
|||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306
Query: 450 cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246
Query: 510 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186
Query: 570 gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
|||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126
Query: 630 tacctggagatggggaaggacacgctgcagcgcgcag 666
||||||||||||||||| ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089
Score = 442 bits (223), Expect = e-121
Identities = 265/279 (94%)
Strand = Plus / Plus
Query: 664 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 723
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121
Query: 724 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 783
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181
Query: 784 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 843
||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241
Query: 844 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301
Query: 904 agcacgagggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340
Score = 387 bits (195), Expect = e-104
Identities = 253/271 (93%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 121 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799
Query: 181 gtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccc 240
||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24644798 gtt-catctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740
Query: 241 cgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattggg 300
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680
Query: 301 atcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaacc 360
|| |||||| | || | || || || ||||||||||| ||||||||||||||||||||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620
Query: 361 tgcgcggctactacaaccagagcgaggccgg 391
|||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589
Score = 387 bits (195), Expect = e-104
Identities = 252/271 (92%)
Strand = Plus / Minus
Query: 672 ccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgctgg 731
|||||| || |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541
Query: 732 gccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggaccag 791
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481
Query: 792 agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 851
||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421
Query: 852 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 911
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361
Query: 912 ggcctgcaggagcccctcaccctgagatggg 942
|||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330
Score = 369 bits (186), Expect = 3e-99
Identities = 252/274 (91%)
Strand = Plus / Plus
Query: 669 cctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttgaggtgc 728
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630
Query: 729 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 788
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690
Query: 789 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 848
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750
Query: 849 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 908
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810
Query: 909 gagggcctgcaggagcccctcaccctgagatggg 942
||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844
Score = 349 bits (176), Expect = 3e-93
Identities = 248/272 (91%)
Strand = Plus / Minus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
|| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009
Query: 240 ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
|| ||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949
Query: 300 gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
||||||||||| | || | || || || |||||||||| |||||||||||||||| | |
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889
Query: 360 ctgcgcggctactacaaccagagcgaggccgg 391
||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857
Score = 341 bits (172), Expect = 7e-91
Identities = 212/224 (94%), Gaps = 1/224 (0%)
Strand = Plus / Minus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24704880 agtgtgagacagctgccttgtggggactgagtgacacaagatttgttcacgtcccacttt 24704821
Query: 1195 gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
|||||||| ||||||||||||||| ||||||||||||| |||||| |||||| |||||||
Sbjct: 24704820 gtgacttcagatcccctgactcctatttctgcagctgcatctgaatgtgtctgtgttcct 24704761
Query: 1255 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct: 24704760 atgcgcatcatgagaggaggtggggacactggcccagccctgtcccccacgtcccctcct 24704701
Query: 1315 caccctgacctgtgttctctttcctgatccactttccagctcca 1358
||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 24704700 caccctgacctgtgttctcttccctgatccacttttcagctcca 24704657
Score = 341 bits (172), Expect = 7e-91
Identities = 247/272 (90%)
Strand = Plus / Minus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
|| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108
Query: 240 ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
|||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048
Query: 300 gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
||| |||||| | || | || |||||||||||||| | |||||||||||||||| | |
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988
Query: 360 ctgcgcggctactacaaccagagcgaggccgg 391
||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956
Score = 339 bits (171), Expect = 3e-90
Identities = 210/223 (94%)
Strand = Plus / Plus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacacagatttgttcacgtcccactttg 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24604646 agtgtgagacagctgccttgtggggactgagtgacacagatttgttcacgtcccactttg 24604705
Query: 1196 tgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttccta 1255
||||||| |||||||||||||||||||||||||| || | |||| |||||| ||| ||||
Sbjct: 24604706 tgacttcagatcccctgactcctgtttctgcagcagcatttgaatgtgtctgtgtcccta 24604765
Query: 1256 tgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcctc 1315
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 24604766 tgagcatcctgagaggaggtggggaccctggcccagtcctgccccccacgtcccctcctc 24604825
Query: 1316 accctgacctgtgttctctttcctgatccactttccagctcca 1358
|||||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 24604826 accctgacctgtgttctcttccctgatcctctttccagttcca 24604868
Score = 335 bits (169), Expect = 4e-89
Identities = 250/277 (90%)
Strand = Plus / Minus
Query: 390 gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158
Query: 450 cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098
Query: 510 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038
Query: 570 gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
|||||||||||||| ||| ||||||||| |||| ||||||||| ||||| | |
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978
Query: 630 tacctggagatggggaaggacacgctgcagcgcgcag 666
|||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941
Score = 331 bits (167), Expect = 7e-88
Identities = 207/219 (94%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct: 24748521 agtgtgagacaactgccttgtggggactgagggacacaagatttgttcacatcccacttt 24748462
Query: 1195 gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
|||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct: 24748461 gtgacttcagatcccctgactcctgtttctgcagctgcatctgaaagggtctgtgttcct 24748402
Query: 1255 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24748401 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccacgtcccctcct 24748342
Query: 1315 caccctgacctgtgttctctttcctgatccactttccag 1353
||||||||||||||||||||| |||||||| ||||||||
Sbjct: 24748341 caccctgacctgtgttctcttccctgatcctctttccag 24748303
Score = 327 bits (165), Expect = 1e-86
Identities = 249/277 (89%)
Strand = Plus / Minus
Query: 390 gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
|||||||||||||||||||| |||| |||||| || ||||||||||||||||| |||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672
Query: 450 cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612
Query: 510 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
|||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552
Query: 570 gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
|||| |||||||| ||||| ||||||||| ||||| | ||||||||| ||||| |||
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492
Query: 630 tacctggagatggggaaggacacgctgcagcgcgcag 666
|||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455
Score = 317 bits (160), Expect = 1e-83
Identities = 209/224 (93%), Gaps = 1/224 (0%)
Strand = Plus / Minus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 24655959 agtgtgagacagctgccttgtggggactgagggacacaagatttgttcacgtcccacttt 24655900
Query: 1195 gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 24655899 gtgacttcagatcccctgactcctgtttctgcagctgcctctgaaagtgtctgtgtttct 24655840
Query: 1255 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
|||||||||||||||| ||||||| || |||||| | ||||| |||||| |||||||||
Sbjct: 24655839 atgagcatcatgagagtaggtgggaacactggcctaaccctgtcccccacatcccctcct 24655780
Query: 1315 caccctgacctgtgttctctttcctgatccactttccagctcca 1358
||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 24655779 caccctgacctgtgttctcttccctgatccacttttcagctcca 24655736
Score = 307 bits (155), Expect = 1e-80
Identities = 204/219 (93%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
||||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||||||
Sbjct: 24721089 agtgtgagagagctgccttgtagggactgagggacacaagatttgttcacgtcccacttt 24721030
Query: 1195 gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
|||||| | ||||||||||||| |||||||||||| || ||||||||||||| |||||||
Sbjct: 24721029 gtgactccagatcccctgactcttgtttctgcagcagcatctgaaagtgtctgtgttcct 24720970
Query: 1255 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 24720969 atgagcatcatgagaagaggtggggaccctggcccagtcctgccccccatgtccccttct 24720910
Query: 1315 caccctgacctgtgttctctttcctgatccactttccag 1353
||||||||||||||||||||| |||||||| ||||||||
Sbjct: 24720909 caccctgacctgtgttctcttccctgatcctctttccag 24720871
Score = 303 bits (153), Expect = 1e-79
Identities = 246/277 (88%)
Strand = Plus / Minus
Query: 390 gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102
Query: 450 cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
||| ||||| | | | | ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042
Query: 510 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982
Query: 570 gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
||| ||||||||| ||| ||||||||| ||||| | ||||||||| |||| ||||||
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922
Query: 630 tacctggagatggggaaggacacgctgcagcgcgcag 666
||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885
Score = 301 bits (152), Expect = 6e-79
Identities = 242/272 (88%)
Strand = Plus / Minus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
|| ||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593
Query: 240 ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
|||||||||||||||||||| |||| |||||||||| || ||||||| ||||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533
Query: 300 gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
||| |||||| | || |||||||||||||||||||||| ||||| |||||||| |
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473
Query: 360 ctgcgcggctactacaaccagagcgaggccgg 391
||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441
Score = 295 bits (149), Expect = 4e-77
Identities = 245/277 (88%)
Strand = Plus / Minus
Query: 390 gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231
Query: 450 cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
||| ||||| | | | || |||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171
Query: 510 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
||||||||||||||||| |||||||||||||||||| |||||| |||| ||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111
Query: 570 gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
||| ||||||||| ||| ||||||||| ||||| | ||||||||| |||||||||||
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051
Query: 630 tacctggagatggggaaggacacgctgcagcgcgcag 666
||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014
Score = 280 bits (141), Expect = 2e-72
Identities = 243/277 (87%)
Strand = Plus / Minus
Query: 390 gggtctcacaccctccagagcatgtacggctgcgacgtgggaccagacgggctcttcctc 449
||||||||||||||||||| || ||| ||||||||||||||||||||||||||| |||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030
Query: 450 cgcgggtacagtcagttcgcctacgacggcgcggattacatcgccctgaacgaggacctg 509
| | ||||||| ||| |||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970
Query: 510 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 569
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910
Query: 570 gatgcggcggagcaaatgagaagctacctggagggcgcctgtgtggaggggctccagaaa 629
||| ||| ||||| ||| ||||||||| ||||| ||||||||| |||||| | |
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850
Query: 630 tacctggagatggggaaggacacgctgcagcgcgcag 666
||| ||||||||| |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813
Score = 276 bits (139), Expect = 3e-71
Identities = 200/219 (91%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacac-agatttgttcacgtcccacttt 1194
||||||||||||||||||||||||||| |||| || ||||| |||||| |||||||||
Sbjct: 26674560 agtgtgagacagctgccttgtggggaccaagtgttacgagattcgttcacatcccacttt 26674501
Query: 1195 gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
|||||||| |||||||||||||||||||||||||| || | ||| |||||| ||| |||
Sbjct: 26674500 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 26674441
Query: 1255 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 26674440 atgagcatcatgagaggaggtggggaccctggcccagccctgtcccccacgtcccctcct 26674381
Query: 1315 caccctgacctgtgttctctttcctgatccactttccag 1353
||||||||||||||||||||| |||||||| ||||||||
Sbjct: 26674380 caccctgacctgtgttctcttccctgatcctctttccag 26674342
Score = 248 bits (125), Expect = 8e-63
Identities = 195/219 (89%), Gaps = 12/219 (5%)
Strand = Plus / Minus
Query: 1136 agtgtgagacagctgccttgtggggactgagtgacaca-gatttgttcacgtcccacttt 1194
|||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 24684019 agtgtgagacagctgccttgtgggaactgagggacacaagatttgttcacgtcccacttt 24683960
Query: 1195 gtgacttcggatcccctgactcctgtttctgcagctgcctctgaaagtgtctttgttcct 1254
|||| | | |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 24683959 gtgaatccagatcccctgactcctgtttctgcagctgcctctgaaagggtctgtgttcct 24683900
Query: 1255 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1314
||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 24683899 atgagcatcctgagaggaggtggggaccctgg-----------cccccacgtcccctcct 24683851
Query: 1315 caccctgacctgtgttctctttcctgatccactttccag 1353
||||||||||||||||||||| | |||||| ||||||||
Sbjct: 24683850 caccctgacctgtgttctcttccatgatcctctttccag 24683812
Score = 246 bits (124), Expect = 3e-62
Identities = 169/184 (91%)
Strand = Plus / Minus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
|||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
|||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430
Query: 240 ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370
Query: 300 gatc 303
||||
Sbjct: 24707369 gatc 24707366
Score = 226 bits (114), Expect = 3e-56
Identities = 231/270 (85%)
Strand = Plus / Minus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
||||||||||||||||| ||| || |||| | ||||||||||| | ||||||| |||||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
|| ||||||| ||||||| |||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662
Query: 240 ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
||||| | | ||| ||||||||||||| | |||| || ||||||| | ||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602
Query: 300 gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
|| |||||| | ||||||||||||||||||||||||| | ||| ||| ||||||| |
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542
Query: 360 ctgcgcggctactacaaccagagcgaggcc 389
||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512
Score = 218 bits (110), Expect = 7e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 24603860
Score = 218 bits (110), Expect = 7e-54
Identities = 231/270 (85%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
||||||||||||||||| ||| || |||| | ||||||||||| | ||||||| |||||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
|| ||||||| ||||||| |||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532
Query: 240 ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
||||| | | ||| ||||||||||||| | |||| || ||||||| | |||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473
Query: 300 gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
|| |||||| | ||||||||||||||||||||||||| ||||| ||| ||||||| |
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413
Query: 360 ctgcgcggctactacaaccagagcgaggcc 389
||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383
Score = 218 bits (110), Expect = 7e-54
Identities = 113/114 (99%)
Strand = Plus / Minus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24749338
Score = 204 bits (103), Expect = 1e-49
Identities = 109/111 (98%)
Strand = Plus / Minus
Query: 945 cctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtc 1004
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26675478 cctccacagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtc 26675419
Query: 1005 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675418 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 26675368
Score = 202 bits (102), Expect = 4e-49
Identities = 111/114 (97%)
Strand = Plus / Minus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24642988
Score = 202 bits (102), Expect = 4e-49
Identities = 111/114 (97%)
Strand = Plus / Plus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctggaggaagaagtgctcaggt 27616571
Score = 194 bits (98), Expect = 1e-46
Identities = 110/114 (96%)
Strand = Plus / Minus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctggaggaagaagcgctcaggt 24721892
Score = 186 bits (94), Expect = 2e-44
Identities = 109/114 (95%)
Strand = Plus / Minus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824
Score = 186 bits (94), Expect = 2e-44
Identities = 109/114 (95%)
Strand = Plus / Minus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
|||||| ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctggaggaagaagtgctcaggt 24705676
Score = 184 bits (93), Expect = 1e-43
Identities = 165/189 (87%)
Strand = Plus / Minus
Query: 126 cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgtttc 185
|||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||| | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407
Query: 186 atcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccccgaat 245
| || |||||||| ||||||||||||||||||||| ||||||||||||| || | ||||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347
Query: 246 ccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgggatcgg 305
||| ||||||||||||||||||||||| | ||| ||||||| ||||||||||||||| |
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287
Query: 306 gagacacag 314
|||||||||
Sbjct: 27210286 gagacacag 27210278
Score = 184 bits (93), Expect = 1e-43
Identities = 165/189 (87%)
Strand = Plus / Minus
Query: 126 cactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgtttc 185
|||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||| | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933
Query: 186 atcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccccgaat 245
| || |||||||| ||||||||||||||||||||| ||||||||||||| || | ||||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873
Query: 246 ccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgggatcgg 305
||| ||||||||||||||||||||||| | ||| ||||||| ||||||||||||||| |
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813
Query: 306 gagacacag 314
|||||||||
Sbjct: 27629812 gagacacag 27629804
Score = 168 bits (85), Expect = 6e-39
Identities = 106/113 (93%)
Strand = Plus / Plus
Query: 435 gacgggctcttcctccgcgggtacagtcagttcgcctacgacggcgcggattacatcgcc 494
||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997
Query: 495 ctgaacgaggacctgcgctcctggaccgcggcggacacggcggctcagatcac 547
||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatcac 27615050
Score = 163 bits (82), Expect = 3e-37
Identities = 106/114 (92%)
Strand = Plus / Minus
Query: 942 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 1001
|||||| |||||||||| |||||||| |||| |||||||||||||||||| || ||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819
Query: 1002 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1055
||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctggaggaagaagcgctcaggt 24656765
Score = 159 bits (80), Expect = 5e-36
Identities = 224/272 (82%)
Strand = Plus / Plus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
|||||||||||||||||||||||| |||| ||||||||||| || || || | |||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgcc 239
|| ||| || |||||||| || |||||||||||||||||| ||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568
Query: 240 ccgaatccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgg 299
||||||||| || |||||||||| | |||||| | ||| |||||| | |||||||||
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628
Query: 300 gatcgggagacacagatcagcaaggacaacgcacagacttaccgagtgaacctgaacaac 359
|||||| | |||| ||| |||||||| | |||||| || || ||||| |||||| |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688
Query: 360 ctgcgcggctactacaaccagagcgaggccgg 391
||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720
Score = 149 bits (75), Expect = 5e-33
Identities = 93/99 (93%)
Strand = Plus / Minus
Query: 24 tccgcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctg 83
|||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct: 24645273 tccgcttctctccagactccgaggctgaggatcatggggccccgagccctcttcttgctg 24645214
Query: 84 ctgtcggggaccctggccctgactgggacccgggcgggt 122
|||||||||||||||||||||||||| ||||||| ||||
Sbjct: 24645213 ctgtcggggaccctggccctgactggtacccgggagggt 24645175
Score = 143 bits (72), Expect = 3e-31
Identities = 87/92 (94%)
Strand = Plus / Minus
Query: 27 gcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctgctg 86
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 24659069 gcttctccccagactccgcggctgaggatcatggggccccgagccctcttcctgctgctg 24659010
Query: 87 tcggggaccctggccctgactgggacccgggc 118
|||||| ||||||||||||| ||||| |||||
Sbjct: 24659009 tcgggggccctggccctgaccgggactcgggc 24658978
Score = 143 bits (72), Expect = 3e-31
Identities = 90/96 (93%)
Strand = Plus / Minus
Query: 27 gcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctgctg 86
|||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 24687121 gcttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctg 24687062
Query: 87 tcggggaccctggccctgactgggacccgggcgggt 122
|||||||||||||||||||| ||||||| |||||||
Sbjct: 24687061 tcggggaccctggccctgaccgggacccaggcgggt 24687026
Score = 135 bits (68), Expect = 8e-29
Identities = 89/96 (92%)
Strand = Plus / Minus
Query: 27 gcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctgctg 86
|||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 24751635 gcttctccccagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctg 24751576
Query: 87 tcggggaccctggccctgactgggacccgggcgggt 122
|||||||||||||||||||| ||||||| |||||||
Sbjct: 24751575 tcggggaccctggccctgaccgggacccaggcgggt 24751540
Score = 133 bits (67), Expect = 3e-28
Identities = 151/179 (84%)
Strand = Plus / Plus
Query: 125 ccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccccgttt 184
||||||||||||| || || ||||||||||||||||||||| |||| || || |||| |
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356
Query: 185 catcgaagtcggctacgtggacgacacgcagttcgtgtggttcgacagcgacgccccgaa 244
||| | ||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416
Query: 245 tccgcggatggagccgcgggcgccgtggatagagaaggagggtcaggagtattgggatc 303
|||| | |||||| |||| || ||||||| ||| || |||| | |||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggatc 24620475
Score = 133 bits (67), Expect = 3e-28
Identities = 88/95 (92%)
Strand = Plus / Minus
Query: 24 tccgcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctg 83
||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||
Sbjct: 24724198 tccgcttctccccagactccgcggctgaggatcatggggccccgaggcctcttcctgctg 24724139
Query: 84 ctgtcggggaccctggccctgactgggacccgggc 118
|| |||||| ||||||||||||| ||||| |||||
Sbjct: 24724138 ctctcgggggccctggccctgaccgggactcgggc 24724104
Score = 101 bits (51), Expect = 1e-18
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 24 tccgcttctccccagactccgtggctgaggatcatggggccccgagccctcgtcctgctg 83
||||||||||||||||| | |||| |||||||||||||| ||||||| |||||||||
Sbjct: 24707973 tccgcttctccccagacaaagaggctaaggatcatggggcctggagcccttgtcctgctg 24707914
Query: 84 ctgtcggggaccctggccctgactgggacccgggcgggt 122
||||| ||| ||||||||||||| |||||| ||||||||
Sbjct: 24707913 ctgtccggggccctggccctgaccgggacctgggcgggt 24707875
Score = 99.6 bits (50), Expect = 4e-18
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1084 caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24642398 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 24642345
Score = 97.6 bits (49), Expect = 2e-17
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 416 cggctgcgacgtgggaccagacgggctcttcctccgcgggtacagtcagttcgcctacga 475
|||||||||||||||| | ||||||| | |||| || |||||| |||||| |||||||
Sbjct: 27603744 cggctgcgacgtgggatccgacgggcgcatccttcgagggtacgagcagttctcctacga 27603803
Query: 476 cggcgcggattacatcgccctgaacgaggacctgcgctcctggaccgcg 524
||||| |||||||||| |||||| || |||||||||||||||||||||
Sbjct: 27603804 cggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852
Score = 85.7 bits (43), Expect = 7e-14
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 202 tggacgacacgcagttcgtgtggttcgacagcgacgccccgaatccgcggatggagccgc 261
||||||||||||||||||| ||||| |||||| ||| ||||||| || ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343
Query: 262 gggcgccgtggatagagaaggagggtcaggagtattgggatcg 304
||||||||||||| ||| ||||||| | ||| |||||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggatcg 27603386
Score = 83.8 bits (42), Expect = 3e-13
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1084 caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 24604434 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 24604487
Score = 81.8 bits (41), Expect = 1e-12
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 12277709 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 12277768
Query: 1493 caaaggcagggttccctaccgagggaaaa 1521
| ||||||||||||| ||||||| ||||
Sbjct: 12277769 cgaaggcagggttcctaaccgaggaaaaa 12277797
Score = 81.8 bits (41), Expect = 1e-12
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 462 cagttcgcctacgacggcgcggattacatcgccctgaacgaggacctgcgctcctggacc 521
|||| |||||||||||||| |||||||||| | |||||||||||||| | ||||||||
Sbjct: 27209859 cagtacgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggact 27209800
Query: 522 gcggcggacacggcggctcagatcaccaagcgcaagaggga 562
|| ||||||| |||||||| | |||| |||||||| ||||
Sbjct: 27209799 gcagcggacatggcggctcgggtcacacagcgcaagtggga 27209759
Score = 81.8 bits (41), Expect = 1e-12
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 462 cagttcgcctacgacggcgcggattacatcgccctgaacgaggacctgcgctcctggacc 521
|||| |||||||||||||| |||||||||| | |||||||||||||| | ||||||||
Sbjct: 27629385 cagtacgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggact 27629326
Query: 522 gcggcggacacggcggctcagatcaccaagcgcaagaggga 562
|| ||||||| |||||||| | |||| |||||||| ||||
Sbjct: 27629325 gcagcggacatggcggctcgggtcacacagcgcaagtggga 27629285
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1049 ctcaggtgaaaaaggagggagctacactcaggctgcagg 1087
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaaaggagggagctacactcaggctgcagg 24604307
Score = 75.8 bits (38), Expect = 6e-11
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 1084 caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
||||||||||||||| ||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 24684231 caggcagtgacagtgaccagggctccgatgtgtcccttaccaaggatcctagag 24684178
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1051 caggtgaaaaaggagggagctacactcaggctgcagg 1087
|||||||||||||||||||||||||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgcagg 24642525
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1051 caggtgaaaaaggagggagctacactcaggctgcagg 1087
|||||||||||||||||||||||||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgcagg 24684358
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1051 caggtgaaaaaggagggagctacactcaggctgcagg 1087
|||||||||||||||||||||||||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgcagg 24748857
Score = 73.8 bits (37), Expect = 2e-10
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| || |||||| | ||| || |||||||||| ||||||||||
Sbjct: 80560412 tgcggggagccaaggagatgcaggaggccaaggaagggaactagcctgacggcacagttc 80560353
Query: 1493 caaaggcagggttccctaccgagggaaaa 1521
| ||||||||||||| ||||||| ||||
Sbjct: 80560352 cgaaggcagggttcctaaccgaggaaaaa 80560324
Score = 69.9 bits (35), Expect = 4e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 1437 gggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaaa 1496
||||||| | |||| ||| ||||| | ||| || |||||||||||||||||||||| ||
Sbjct: 20392506 gggagccgaggagatacagaaggccaaggaagggaactagcctgatggcacagttccgaa 20392447
Query: 1497 ggcagggttcc 1507
|||||||||||
Sbjct: 20392446 ggcagggttcc 20392436
Score = 67.9 bits (34), Expect = 2e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 1084 caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
||||||||||||||| ||||||||| ||||||||||| ||| ||| ||||||||
Sbjct: 24748733 caggcagtgacagtgaccagggctccgatgtgtcccttaccaagggtcctagag 24748680
Score = 67.9 bits (34), Expect = 2e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 1084 caggcagtgacagtgcccagggctctgatgtgtccctcacccaggatcctagag 1137
||||||| |||||||||||| |||||| ||||||||||| | ||||||||||||
Sbjct: 26674772 caggcagggacagtgcccagagctctggtgtgtccctcatcaaggatcctagag 26674719
Score = 65.9 bits (33), Expect = 6e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1084 caggcagtgacagtgcccagggctctgatgtgt 1116
|||||||||||||||||||||||||||||||||
Sbjct: 24656172 caggcagtgacagtgcccagggctctgatgtgt 24656140
Score = 65.9 bits (33), Expect = 6e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1084 caggcagtgacagtgcccagggctctgatgtgt 1116
|||||||||||||||||||||||||||||||||
Sbjct: 24705083 caggcagtgacagtgcccagggctctgatgtgt 24705051
Score = 65.9 bits (33), Expect = 6e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1055 tgaaaaaggagggagctacactcaggctgcagg 1087
|||||||||||||||||||||||||||||||||
Sbjct: 26674930 tgaaaaaggagggagctacactcaggctgcagg 26674898
Score = 65.9 bits (33), Expect = 6e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 55 tcatggggccccgagccctcgtcctgctgctgtcggggaccctgg 99
|||||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 27614072 tcatggggccccgagccctcctcctgctgctctccgggaccctgg 27614116
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1084 caggcagtgacagtgcccagggctctgatgtg 1115
||||||||||||||||||||||||||||||||
Sbjct: 24721300 caggcagtgacagtgcccagggctctgatgtg 24721269
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1051 caggtgaaaaaggagggagctacactcaggct 1082
||||||||||||||||||||||||||||||||
Sbjct: 24721463 caggtgaaaaaggagggagctacactcaggct 24721432
Score = 60.0 bits (30), Expect = 4e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 81 ctgctgtcggggaccctggccctgactgggacccgggcgggt 122
|||||||||||| ||||||||||||| |||||| ||||||||
Sbjct: 24627347 ctgctgtcgggggccctggccctgaccgggacctgggcgggt 24627306
>gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffold479
Length = 309
Score = 333 bits (168), Expect = 2e-88
Identities = 201/212 (94%), Gaps = 1/212 (0%)
Strand = Plus / Plus
Query: 1314 tcaccctgacctgtgttctctttcctgatccactttccagctccaacaaggttgggggga 1373
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 tcaccctgacctgtgttctctttcctgatccactttccagctccaaca-ggttgggggga 59
Query: 1374 ggcaggcggcaatggaccatctccatccttatactaaattcattgccctgactggtgact 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ggcaggcggcaatggaccatctccatccttatactaaattcattgccctgactggtgact 119
Query: 1434 gcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttcc 1493
|||||||||| | |||||||| |||||| | ||| || ||||||||||||||||||||||
Sbjct: 120 gcggggagccaaggagacacaggaggccaaggaagggaactagcctgatggcacagttcc 179
Query: 1494 aaaggcagggttccctaccgagggaaaagagc 1525
|||||||||||||| ||| ||||||||||||
Sbjct: 180 aaaggcagggttcctaaccaagggaaaagagc 211
>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
Length = 107
Score = 170 bits (86), Expect = 1e-39
Identities = 98/102 (96%)
Strand = Plus / Plus
Query: 120 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagccc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61
Query: 180 cgtttcatcgaagtcggctacgtggacgacacgcagttcgtg 221
|| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 62 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtg 103
>Sscrofa_ChrX
|| Length = 144288218
Score = 93.7 bits (47), Expect = 3e-16
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 1431 actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
||||||||||||| | |||| ||| |||||| | ||| || ||||||||||||| |||||
Sbjct: 74537185 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggtacagt 74537126
Query: 1491 tccaaaggcagggttccctaccgagggaaaa 1521
||||||||||||||||| ||||||| ||||
Sbjct: 74537125 tccaaaggcagggttcctaaccgaggaaaaa 74537095
Score = 93.7 bits (47), Expect = 3e-16
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 1431 actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
||||||||||||| | |||| ||| |||||| | ||| || ||||||||||||| |||||
Sbjct: 74666825 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggtacagt 74666884
Query: 1491 tccaaaggcagggttccctaccgagggaaaa 1521
||||||||||||||||| ||||||| ||||
Sbjct: 74666885 tccaaaggcagggttcctaaccgaggaaaaa 74666915
Score = 81.8 bits (41), Expect = 1e-12
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 82812047 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 82812106
Query: 1493 caaaggcagggttccctaccgagggaaaa 1521
| ||||||||||||| ||||||| ||||
Sbjct: 82812107 cgaaggcagggttcctaaccgaggaaaaa 82812135
Score = 77.8 bits (39), Expect = 2e-11
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 83585592 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 83585651
Query: 1493 caaaggcagggttcc 1507
| |||||||||||||
Sbjct: 83585652 cgaaggcagggttcc 83585666
Score = 71.9 bits (36), Expect = 1e-09
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 1430 gactgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacag 1489
|||||||||||||| | |||| || ||||| | ||| || ||||||||||||||||||
Sbjct: 51210013 gactgcggggagccgaggagatgcaggaggctgaggaagggaactagcctgatggcacag 51209954
Query: 1490 ttccaaaggcagggttccctaccgagggaaaa 1521
||| ||||||||||||| ||||||| ||||
Sbjct: 51209953 ttctgaaggcagggttcctaaccgaggaaaaa 51209922
Score = 65.9 bits (33), Expect = 6e-08
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 1456 gaggccnangaangggactagcctgatggcacagttccaaaggcagggttccctaccgag 1515
|||||| | ||| || |||||||||| ||||||||||| ||||||||||||| ||| ||
Sbjct: 96145572 gaggccgaggaagggaactagcctgacggcacagttccgaaggcagggttcctaaccaag 96145513
Query: 1516 ggaaaa 1521
||||||
Sbjct: 96145512 ggaaaa 96145507
Score = 61.9 bits (31), Expect = 1e-06
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| || |||||| | | | || ||||||||||||||||||| |
Sbjct: 78168690 tgcggggagccgaggagatgcaggaggccaagggagggaactagcctgatggcacagtcc 78168631
Query: 1493 caaaggcagggttcc 1507
| |||||||||||||
Sbjct: 78168630 cgaaggcagggttcc 78168616
>Sscrofa_Chr08
|| Length = 148491826
Score = 87.7 bits (44), Expect = 2e-14
Identities = 67/76 (88%)
Strand = Plus / Minus
Query: 1432 ctgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagtt 1491
|||||||||||| | |||| ||| |||||| | ||| || ||||||||||||||||||||
Sbjct: 70193181 ctgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatggcacagtt 70193122
Query: 1492 ccaaaggcagggttcc 1507
|| |||||||||||||
Sbjct: 70193121 ccgaaggcagggttcc 70193106
Score = 83.8 bits (42), Expect = 3e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 1436 ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
|||||||| | |||| ||| |||||| | ||| || |||||||||||||||||||||| |
Sbjct: 7154104 ggggagccaaggagatacaggaggcctaggaagggaactagcctgatggcacagttccca 7154045
Query: 1496 aggcagggttccctaccgagggaaaa 1521
|||||||||||| ||| ||||||||
Sbjct: 7154044 aggcagggttcctaaccaagggaaaa 7154019
Score = 83.8 bits (42), Expect = 3e-13
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 1436 ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
|||||||| | |||| ||| |||||| | ||| || |||||||||||||||||||||| |
Sbjct: 7300654 ggggagccaaggagatacaggaggcctaggaagggaactagcctgatggcacagttccca 7300595
Query: 1496 aggcagggttccctaccgagggaaaa 1521
|||||||||||| ||| ||||||||
Sbjct: 7300594 aggcagggttcctaaccaagggaaaa 7300569
>Sscrofa_Chr03
|| Length = 144787322
Score = 85.7 bits (43), Expect = 7e-14
Identities = 78/91 (85%)
Strand = Plus / Minus
Query: 1431 actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
||||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||
Sbjct: 76531790 actgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagt 76531731
Query: 1491 tccaaaggcagggttccctaccgagggaaaa 1521
||| ||||||||||||| ||||||| ||||
Sbjct: 76531730 tccgaaggcagggttcctaaccgaggaaaaa 76531700
>Sscrofa_Chr13
|| Length = 218635234
Score = 81.8 bits (41), Expect = 1e-12
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 185153321 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 185153262
Query: 1493 caaaggcagggttccctaccgagggaaaa 1521
| ||||||||||||| ||||||| ||||
Sbjct: 185153261 cgaaggcagggttcctaaccgaggaaaaa 185153233
Score = 77.8 bits (39), Expect = 2e-11
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| ||| ||| || | ||| || |||||||||||||||||||||
Sbjct: 171962096 tgcggggagccaaggagatacaggagaccaaggaagggaactagcctgatggcacagttc 171962037
Query: 1493 caaaggcagggttcc 1507
| |||||||||||||
Sbjct: 171962036 cgaaggcagggttcc 171962022
Score = 63.9 bits (32), Expect = 2e-07
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| || |||||| | || || |||||||||||||||||||||
Sbjct: 61831738 tgcggggagccgaggagatgcaggaggccgaggaggggaactagcctgatggcacagttc 61831797
Query: 1493 caaaggcagggttccctaccgagg 1516
||||||||||||| |||||||
Sbjct: 61831798 tgaaggcagggttcctaaccgagg 61831821
Score = 63.9 bits (32), Expect = 2e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1452 acangaggccnangaangggactagcctgatggcacagttccaaaggcagggttcc 1507
||| |||||| | ||| || ||||||||||||||||||||| |||||||||||||
Sbjct: 118134497 acaggaggccaaggaagggaactagcctgatggcacagttctgaaggcagggttcc 118134552
Score = 63.9 bits (32), Expect = 2e-07
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 1436 ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
|||||||| | |||| | | |||||| | ||| || |||||||||| ||||||||||||
Sbjct: 137803042 ggggagccgaggagataaaggaggccaaggaagggaactagcctgacagcacagttccaa 137802983
Query: 1496 aggcagggttcc 1507
||||||||||||
Sbjct: 137802982 aggcagggttcc 137802971
Score = 63.9 bits (32), Expect = 2e-07
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 1436 ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
|||||||| | |||| ||| ||| || | ||| || | |||||||||||||||||||| |
Sbjct: 172394277 ggggagccaaggagatacaggagaccaaggaagggaattagcctgatggcacagttccga 172394218
Query: 1496 aggcagggttcc 1507
||||||||||||
Sbjct: 172394217 aggcagggttcc 172394206
Score = 61.9 bits (31), Expect = 1e-06
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 1458 ggccnangaangggactagcctgatggcacagttccaaaggcagggttccctaccgaggg 1517
|||| | ||| || |||||||||| || |||||||||||||||||||||| |||||||
Sbjct: 710744 ggccaaggaagggaactagcctgacggaacagttccaaaggcagggttcctaaccgagga 710685
Query: 1518 aaaa 1521
||||
Sbjct: 710684 aaaa 710681
Score = 61.9 bits (31), Expect = 1e-06
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1456 gaggccnangaangggactagcctgatggcacagttccaaaggcagggttcc 1507
|||||| | ||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 53896572 gaggccgaggaagggaactagcctgactgcacagttccaaaggcagggttcc 53896623
>Sscrofa_Chr10
|| Length = 79102373
Score = 81.8 bits (41), Expect = 1e-12
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| ||| |||||| | ||| || |||||||||||| ||||||||
Sbjct: 64928010 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgatgacacagttc 64928069
Query: 1493 caaaggcagggttccctaccgagggaaaa 1521
| ||||||||||||| ||||||| ||||
Sbjct: 64928070 cgaaggcagggttcctaaccgaggaaaaa 64928098
>Sscrofa_Chr14
|| Length = 153851969
Score = 79.8 bits (40), Expect = 4e-12
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 1433 tgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttc 1492
||||||||||| | |||| ||| |||||| | ||| || |||||||||| ||||||||||
Sbjct: 116915238 tgcggggagccgaggagatacaggaggccaaggaagggaactagcctgacggcacagttc 116915179
Query: 1493 caaaggcagggttccctaccgagg 1516
| ||||||||||||| |||||||
Sbjct: 116915178 cgaaggcagggttcctaaccgagg 116915155
Score = 60.0 bits (30), Expect = 4e-06
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 1431 actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
||||||||||||| | || | || |||||| | ||| || |||||||||| |||| ||
Sbjct: 153664489 actgcggggagccgaggacatgcaggaggccgaggaagggaactagcctgacagcacggt 153664430
Query: 1491 tccaaaggcagggttccctaccgagg 1516
||||||||||||||||| |||||||
Sbjct: 153664429 tccaaaggcagggttcctcaccgagg 153664404
Score = 60.0 bits (30), Expect = 4e-06
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 1431 actgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagt 1490
||||||||||||| | || | || |||||| | ||| || |||||||||| |||| ||
Sbjct: 153808065 actgcggggagccgaggacatgcaggaggccgaggaagggaactagcctgacagcacggt 153808124
Query: 1491 tccaaaggcagggttccctaccgagg 1516
||||||||||||||||| |||||||
Sbjct: 153808125 tccaaaggcagggttcctcaccgagg 153808150
>Sscrofa_Chr18
|| Length = 61220071
Score = 75.8 bits (38), Expect = 6e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 1452 acangaggccnangaangggactagcctgatggcacagttccaaaggcagggttccctac 1511
||| |||||| | ||| || |||||||||||||||||||||| ||||||||||||| ||
Sbjct: 42670444 acaggaggccaaggaagggaactagcctgatggcacagttccgaaggcagggttcctaac 42670385
Query: 1512 cgagggaaaa 1521
||||| ||||
Sbjct: 42670384 cgaggaaaaa 42670375
Score = 67.9 bits (34), Expect = 2e-08
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 1436 ggggagcccaagagacacangaggccnangaangggactagcctgatggcacagttccaa 1495
|||||||| | |||| ||| |||||| | ||| || |||||||||| |||||||||| |
Sbjct: 15568815 ggggagccgaggagatacaggaggccaaggaagggaactagcctgacagcacagttccga 15568756
Query: 1496 aggcagggttccctaccgagggaaaa 1521
|||||||||||| ||||||| ||||
Sbjct: 15568755 aggcagggttcctaaccgaggaaaaa 15568730
Score = 63.9 bits (32), Expect = 2e-07
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 1432 ctgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagtt 1491
|||||||||||| | |||| ||| |||| | | ||| || || |||||||||||||||||
Sbjct: 38803315 ctgcggggagccgaggagatacaggaggtcaaggaagggaaccagcctgatggcacagtt 38803256
Query: 1492 ccaaaggcagggttcc 1507
| |||||||||||||
Sbjct: 38803255 ctgaaggcagggttcc 38803240
Score = 63.9 bits (32), Expect = 2e-07
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 1432 ctgcggggagcccaagagacacangaggccnangaangggactagcctgatggcacagtt 1491
|||||||||||| | |||| ||| |||| | | ||| || || |||||||||||||||||
Sbjct: 39220173 ctgcggggagccgaggagatacaggaggtcaaggaagggaaccagcctgatggcacagtt 39220114
Query: 1492 ccaaaggcagggttcc 1507
| |||||||||||||
Sbjct: 39220113 ctgaaggcagggttcc 39220098
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,602,918
Number of extensions: 511
Number of successful extensions: 511
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 125
Length of query: 1525
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1504
Effective length of database: 2,808,413,156
Effective search space: 4223853386624
Effective search space used: 4223853386624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)