Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000609
(1197 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039587.1| BRCA2 and CDKN1A-interacting protein [Bos ta... 429 e-120
>ref|NP_001039587.1| BRCA2 and CDKN1A-interacting protein [Bos taurus].
Length = 306
Score = 429 bits (1102), Expect = e-120
Identities = 224/309 (72%), Positives = 237/309 (76%)
Frame = +3
Query: 48 MASRPKRRAVGNGSPAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEAYS 227
MASRPKRRAV PA FEAYS
Sbjct: 1 MASRPKRRAVSRVPPA---LGDEEEEDEVEEQDEDDSDEEEDEEDEVVNEEVNIEFEAYS 57
Query: 228 ISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQXXXXXXXXXXXXXXXIF 407
ISDNDYDGIKKLLQQLFLKAPVNTAELT+LLIQQNHIGSVIKQ IF
Sbjct: 58 ISDNDYDGIKKLLQQLFLKAPVNTAELTNLLIQQNHIGSVIKQTDVSEDSDDEVDEDEIF 117
Query: 408 GFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLLSERFV 587
GFISLLNLTERKGTPCAEQIKE ILRLCEKNC K + EQL RL D ARPVGFLLSERF+
Sbjct: 118 GFISLLNLTERKGTPCAEQIKELILRLCEKNCEKSMVEQLDRLFNDTARPVGFLLSERFI 177
Query: 588 NVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSDPKKEE 767
NVPPQIALP+HQQLQKELAEAHR NKPCGKC+FYLLISKTFVEAGKSNS+KK S+ KK+E
Sbjct: 178 NVPPQIALPMHQQLQKELAEAHRANKPCGKCYFYLLISKTFVEAGKSNSKKKRSNQKKDE 237
Query: 768 LMFANAEEEFFYEKALLKFSYPVQEESDTCLGGRWSFDDVPLKPLRTVMFVPGDEMSEIM 947
LMFANAEEEFFYEKA+LKF+Y VQEESDTCLGGRWSFDDVP+KPLRTVM +PGD+MSEIM
Sbjct: 238 LMFANAEEEFFYEKAILKFNYSVQEESDTCLGGRWSFDDVPMKPLRTVMLIPGDKMSEIM 297
Query: 948 EKLTEHLSV 974
EKL EHLSV
Sbjct: 298 EKLKEHLSV 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,994,569
Number of extensions: 942797
Number of successful extensions: 3231
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3231
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 295
Effective length of database: 14,240,222
Effective search space: 4200865490
Effective search space used: 4200865490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000609
(1197 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535056.2| PREDICTED: similar to BRCA2 and CDKN1A-interact... 407 e-113
>ref|XP_535056.2| PREDICTED: similar to BRCA2 and CDKN1A-interacting protein isoform
BCCIPbeta [Canis familiaris].
Length = 315
Score = 407 bits (1045), Expect = e-113
Identities = 213/315 (67%), Positives = 232/315 (73%), Gaps = 6/315 (1%)
Frame = +3
Query: 48 MASRPKRRAVGNGSPAP------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 209
MASRPKRRAVG+ +P P R
Sbjct: 1 MASRPKRRAVGSAAPQPPGGLAVRAEEEEEDGVEDEDEDEEDSDEDEDEDDESVDEEVNV 60
Query: 210 XFEAYSISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQXXXXXXXXXXX 389
FEAYSISD D+DGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQ
Sbjct: 61 EFEAYSISDKDHDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSDDDV 120
Query: 390 XXXXIFGFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFL 569
IFGFISLLNLTERKGT C EQIKE IL CEKNCGK L EQL LL D ++PVGFL
Sbjct: 121 DEDEIFGFISLLNLTERKGTQCVEQIKELILSSCEKNCGKSLVEQLDTLLNDNSKPVGFL 180
Query: 570 LSERFVNVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWS 749
LSERF+NVPPQIALP+HQQLQKELAEAH+TNKPCGKC+FYLLISKTFVEAGK++ +K +
Sbjct: 181 LSERFINVPPQIALPMHQQLQKELAEAHKTNKPCGKCYFYLLISKTFVEAGKNSKKKGSN 240
Query: 750 DPKKEELMFANAEEEFFYEKALLKFSYPVQEESDTCLGGRWSFDDVPLKPLRTVMFVPGD 929
+KEELMFANAEEEFFYEKA+LKFSY VQEESDT LGGRWSFDDVP+KPLRTVM +PGD
Sbjct: 241 QEEKEELMFANAEEEFFYEKAILKFSYSVQEESDTRLGGRWSFDDVPMKPLRTVMLIPGD 300
Query: 930 EMSEIMEKLTEHLSV 974
M EIM++L EHLSV
Sbjct: 301 RMDEIMDRLKEHLSV 315
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,203,435
Number of extensions: 894564
Number of successful extensions: 3345
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3340
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 294
Effective length of database: 15,374,224
Effective search space: 4520021856
Effective search space used: 4520021856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000609
(1197 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_510868.1| BRCA2 and CDKN1A-interacting protein isoform BC... 399 e-111
Alignment gi|NP_510869.1| BRCA2 and CDKN1A-interacting protein isoform C ... 306 2e-83
Alignment gi|NP_057651.1| BRCA2 and CDKN1A-interacting protein isoform BC... 306 2e-83
>ref|NP_510868.1| BRCA2 and CDKN1A-interacting protein isoform BCCIPbeta [Homo
sapiens].
Length = 314
Score = 399 bits (1024), Expect = e-111
Identities = 206/314 (65%), Positives = 231/314 (73%), Gaps = 5/314 (1%)
Frame = +3
Query: 48 MASRPKRRAVGNGSPAP-----RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 212
MASR KRRAV +G P P +
Sbjct: 1 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE 60
Query: 213 FEAYSISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQXXXXXXXXXXXX 392
FEAYS+SDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQ
Sbjct: 61 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD 120
Query: 393 XXXIFGFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLL 572
+FGFISLLNLTERKGT C EQI+E +LR CEKNC K + EQL + L D +PVG LL
Sbjct: 121 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL 180
Query: 573 SERFVNVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSD 752
SERF+NVPPQIALP++QQLQKELA AHRTNKPCGKC+FYLLISKTFVEAGK+NS+KK S+
Sbjct: 181 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN 240
Query: 753 PKKEELMFANAEEEFFYEKALLKFSYPVQEESDTCLGGRWSFDDVPLKPLRTVMFVPGDE 932
KK LMFANAEEEFFYEKA+LKF+Y VQEESDTCLGG+WSFDDVP+ PLRTVM +PGD+
Sbjct: 241 KKKAALMFANAEEEFFYEKAILKFNYSVQEESDTCLGGKWSFDDVPMTPLRTVMLIPGDK 300
Query: 933 MSEIMEKLTEHLSV 974
M+EIM+KL E+LSV
Sbjct: 301 MNEIMDKLKEYLSV 314
>ref|NP_510869.1| BRCA2 and CDKN1A-interacting protein isoform C [Homo sapiens].
Length = 292
Score = 306 bits (784), Expect = 2e-83
Identities = 163/259 (62%), Positives = 180/259 (69%), Gaps = 5/259 (1%)
Frame = +3
Query: 48 MASRPKRRAVGNGSPAP-----RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 212
MASR KRRAV +G P P +
Sbjct: 1 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE 60
Query: 213 FEAYSISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQXXXXXXXXXXXX 392
FEAYS+SDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQ
Sbjct: 61 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD 120
Query: 393 XXXIFGFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLL 572
+FGFISLLNLTERKGT C EQI+E +LR CEKNC K + EQL + L D +PVG LL
Sbjct: 121 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL 180
Query: 573 SERFVNVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSD 752
SERF+NVPPQIALP++QQLQKELA AHRTNKPCGKC+FYLLISKTFVEAGK+NS+KK S+
Sbjct: 181 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN 240
Query: 753 PKKEELMFANAEEEFFYEK 809
KK LMFANAEEEFFYE+
Sbjct: 241 KKKAALMFANAEEEFFYEE 259
>ref|NP_057651.1| BRCA2 and CDKN1A-interacting protein isoform BCCIPalpha [Homo
sapiens].
Length = 322
Score = 306 bits (784), Expect = 2e-83
Identities = 163/259 (62%), Positives = 180/259 (69%), Gaps = 5/259 (1%)
Frame = +3
Query: 48 MASRPKRRAVGNGSPAP-----RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 212
MASR KRRAV +G P P +
Sbjct: 1 MASRSKRRAVESGVPQPPDPPVQRDEEEEKEVENEDEDDDDSDKEKDEEDEVIDEEVNIE 60
Query: 213 FEAYSISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQXXXXXXXXXXXX 392
FEAYS+SDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQ
Sbjct: 61 FEAYSLSDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMD 120
Query: 393 XXXIFGFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLL 572
+FGFISLLNLTERKGT C EQI+E +LR CEKNC K + EQL + L D +PVG LL
Sbjct: 121 EDEVFGFISLLNLTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLL 180
Query: 573 SERFVNVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSD 752
SERF+NVPPQIALP++QQLQKELA AHRTNKPCGKC+FYLLISKTFVEAGK+NS+KK S+
Sbjct: 181 SERFINVPPQIALPMYQQLQKELAGAHRTNKPCGKCYFYLLISKTFVEAGKNNSKKKPSN 240
Query: 753 PKKEELMFANAEEEFFYEK 809
KK LMFANAEEEFFYE+
Sbjct: 241 KKKAALMFANAEEEFFYEE 259
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,477,918
Number of extensions: 875152
Number of successful extensions: 3232
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3230
Number of HSP's successfully gapped: 3
Length of query: 399
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 294
Effective length of database: 14,835,944
Effective search space: 4361767536
Effective search space used: 4361767536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000609
(1197 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079668.2| BRCA2 and CDKN1A-interacting protein [Mus muscu... 374 e-104
>ref|NP_079668.2| BRCA2 and CDKN1A-interacting protein [Mus musculus].
Length = 316
Score = 374 bits (961), Expect = e-104
Identities = 188/254 (74%), Positives = 209/254 (82%)
Frame = +3
Query: 213 FEAYSISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQXXXXXXXXXXXX 392
FEAYSISDNDY GIKKLLQQLFLKAPVNTAELT+LL+QQNHIGSVIKQ
Sbjct: 63 FEAYSISDNDYGGIKKLLQQLFLKAPVNTAELTNLLMQQNHIGSVIKQTDVSEDSDDEVD 122
Query: 393 XXXIFGFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLL 572
IFGFISLLNLTERKGT CAEQIKE +L CEK C + + EQL +LL D ++PVG LL
Sbjct: 123 EDEIFGFISLLNLTERKGTQCAEQIKELVLSFCEKTCEQSMVEQLDKLLNDTSKPVGLLL 182
Query: 573 SERFVNVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSD 752
SERF+NVPPQIALP+HQQLQKEL+EA RTNKPCGKC FYLLISKTF+EAGKS+SRK+
Sbjct: 183 SERFINVPPQIALPMHQQLQKELSEARRTNKPCGKCCFYLLISKTFMEAGKSSSRKRQDS 242
Query: 753 PKKEELMFANAEEEFFYEKALLKFSYPVQEESDTCLGGRWSFDDVPLKPLRTVMFVPGDE 932
++ LMFANAEEEFFYEKA+LKFSY VQ ESDT LGGRWSFDDVP+ PLRTVM +P D
Sbjct: 243 LQQGALMFANAEEEFFYEKAILKFSYSVQGESDTRLGGRWSFDDVPMTPLRTVMVIPDDR 302
Query: 933 MSEIMEKLTEHLSV 974
M+EIME L +HLSV
Sbjct: 303 MNEIMETLKDHLSV 316
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,733,649
Number of extensions: 740387
Number of successful extensions: 2615
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2615
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 295
Effective length of database: 12,493,815
Effective search space: 3685675425
Effective search space used: 3685675425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000609
(1197 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926118.1| PREDICTED: BRCA2 and CDKN1A-interacting prot... 501 e-142
>ref|XP_001926118.1| PREDICTED: BRCA2 and CDKN1A-interacting protein [Sus scrofa].
Length = 309
Score = 501 bits (1291), Expect = e-142
Identities = 257/309 (83%), Positives = 257/309 (83%)
Frame = +3
Query: 48 MASRPKRRAVGNGSPAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEAYS 227
MASRPKRRAVGNGSPAPR FEAYS
Sbjct: 1 MASRPKRRAVGNGSPAPRDEEEEEDEVEGEDEDDEDSDEGEDEEDEIINEEVNIEFEAYS 60
Query: 228 ISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQXXXXXXXXXXXXXXXIF 407
ISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQ IF
Sbjct: 61 ISDNDYDGIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQSVVSEDSDDDVDEDEIF 120
Query: 408 GFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLLSERFV 587
GFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLLSERFV
Sbjct: 121 GFISLLNLTERKGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLLSERFV 180
Query: 588 NVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSDPKKEE 767
NVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSDPKKEE
Sbjct: 181 NVPPQIALPLHQQLQKELAEAHRTNKPCGKCHFYLLISKTFVEAGKSNSRKKWSDPKKEE 240
Query: 768 LMFANAEEEFFYEKALLKFSYPVQEESDTCLGGRWSFDDVPLKPLRTVMFVPGDEMSEIM 947
LMFANAEEEFFYEKALLKFSYPVQEESDTCLGGRWSFDDVPLKPLRTVMFVPGDEMSEIM
Sbjct: 241 LMFANAEEEFFYEKALLKFSYPVQEESDTCLGGRWSFDDVPLKPLRTVMFVPGDEMSEIM 300
Query: 948 EKLTEHLSV 974
EKLTEHLSV
Sbjct: 301 EKLTEHLSV 309
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,140,041
Number of extensions: 716767
Number of successful extensions: 2038
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2037
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,829,335
Effective search space: 2631141830
Effective search space used: 2631141830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000609
(1197 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 779 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 779 bits (393), Expect = 0.0
Identities = 393/393 (100%)
Strand = Plus / Plus
Query: 805 agaaggcgctcctgaagttcagctacccggtgcaggaggagagcgacacctgcctggggg 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146772298 agaaggcgctcctgaagttcagctacccggtgcaggaggagagcgacacctgcctggggg 146772357
Query: 865 gcagatggtcctttgacgacgtgcccttgaagcccctgcggactgtgatgttcgttccgg 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146772358 gcagatggtcctttgacgacgtgcccttgaagcccctgcggactgtgatgttcgttccgg 146772417
Query: 925 gcgatgagatgagcgaaatcatggagaaactcacagagcacctgtccgtctaagccgtct 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146772418 gcgatgagatgagcgaaatcatggagaaactcacagagcacctgtccgtctaagccgtct 146772477
Query: 985 cccgaggacagcggtgggcccgttttggggaattaccagaagactccgtggagagttacg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146772478 cccgaggacagcggtgggcccgttttggggaattaccagaagactccgtggagagttacg 146772537
Query: 1045 gaaaatgtcatgactttattcaggttaaagtcctctacaaaagtaggcttctgtcacctg 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146772538 gaaaatgtcatgactttattcaggttaaagtcctctacaaaagtaggcttctgtcacctg 146772597
Query: 1105 tgtctgtgacgcatttacaaaatatctttgctttttaaaattttggtcaaattaagaatg 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146772598 tgtctgtgacgcatttacaaaatatctttgctttttaaaattttggtcaaattaagaatg 146772657
Query: 1165 gttgattaaaaaggtttccaataagaagaaaaa 1197
|||||||||||||||||||||||||||||||||
Sbjct: 146772658 gttgattaaaaaggtttccaataagaagaaaaa 146772690
Score = 347 bits (175), Expect = 9e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 632 gaaagaactagcagaggcgcacagaactaacaagccatgtgggaagtgtcacttctacct 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146771029 gaaagaactagcagaggcgcacagaactaacaagccatgtgggaagtgtcacttctacct 146771088
Query: 692 tctgatcagcaagacgtttgtggaagcaggaaaaagcaattccagaaagaaatggagtga 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146771089 tctgatcagcaagacgtttgtggaagcaggaaaaagcaattccagaaagaaatggagtga 146771148
Query: 752 tccgaagaaagaggagttgatgtttgcaaatgcagaggaagaatttttctatgag 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146771149 tccgaagaaagaggagttgatgtttgcaaatgcagaggaagaatttttctatgag 146771203
Score = 333 bits (168), Expect = 1e-88
Identities = 187/196 (95%)
Strand = Plus / Plus
Query: 442 agggcaccccgtgtgctgaacagattaaggagtggatcctccgcctctgtgagaagaact 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146768661 agggcaccccgtgtgctgaacagattaaggagtggatcctccgcctctgtgagaagaact 146768720
Query: 502 gcgggaagggcctggctgagcagctgggacggctcctcggtgacgccgccaggcccgtgg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146768721 gcgggaagggcctggctgagcagctgggacggctcctcggtgacgccgccaggcccgtgg 146768780
Query: 562 gctttctgctgagcgagcgattcgtcaacgtnnnnnnnnagattgccctgcccctgcacc 621
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 146768781 gctttctgctgagcgagcgattcgtcaacgtccccccccagattgccctgcccctgcacc 146768840
Query: 622 agcagctgcagaaaga 637
||||||||||| ||||
Sbjct: 146768841 agcagctgcagtaaga 146768856
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 352 agcagtcggttgtttcagaagacagcgatgatgacgtggatgaagatgagattttcggtt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146767809 agcagtcggttgtttcagaagacagcgatgatgacgtggatgaagatgagattttcggtt 146767868
Query: 412 tcataagtcttttaaatttaactgaaagaaagg 444
|||||||||||||||||||||||||||||||||
Sbjct: 146767869 tcataagtcttttaaatttaactgaaagaaagg 146767901
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 271 agcttttcctaaaagctcctgtgaacacagcagaactaacagatctcttaattcagcaga 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146767019 agcttttcctaaaagctcctgtgaacacagcagaactaacagatctcttaattcagcaga 146767078
Query: 331 accatattgggagtgtgattaag 353
|||||||||||||||||||||||
Sbjct: 146767079 accatattgggagtgtgattaag 146767101
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 196 aggaagtgaatattgaatttgaagcttattccatctcagataatgattacgacggaatta 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146765962 aggaagtgaatattgaatttgaagcttattccatctcagataatgattacgacggaatta 146766021
Query: 256 agaaattactgcagcag 272
|||||||||||||||||
Sbjct: 146766022 agaaattactgcagcag 146766038
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 27 aggcgcagggaggccggcaacatggcgtccaggcccaagcggcgcgccgtgggcaatggg 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146760778 aggcgcagggaggccggcaacatggcgtccaggcccaagcggcgcgccgtgggcaatggg 146760837
Query: 87 tctcctgctccgcgc 101
|||||||||||||||
Sbjct: 146760838 tctcctgctccgcgc 146760852
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,187,770
Number of extensions: 291
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 8
Length of query: 1197
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1176
Effective length of database: 2,808,413,156
Effective search space: 3302693871456
Effective search space used: 3302693871456
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)