Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000678
(1292 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus]. 531 e-151
>ref|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus].
Length = 318
Score = 531 bits (1369), Expect = e-151
Identities = 274/302 (90%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAAPAATTAAPAKVE 300
Query: 1143 AK 1148
AK
Sbjct: 301 AK 302
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,941,247
Number of extensions: 1413975
Number of successful extensions: 5700
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5650
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000678
(1292 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal prot... 528 e-150
Alignment gi|XP_863019.1| PREDICTED: similar to 60S acidic ribosomal prot... 490 e-138
>ref|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
1 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
7 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
6 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
2 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
14 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
13 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
12 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
11 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
2 [Canis familiaris].
Length = 317
Score = 528 bits (1359), Expect = e-150
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_863019.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
9 [Canis familiaris].
Length = 324
Score = 490 bits (1261), Expect = e-138
Identities = 257/284 (90%), Positives = 257/284 (90%)
Frame = +3
Query: 297 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 476
QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL
Sbjct: 26 QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 85
Query: 477 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQNTGLGPEKTSFF 656
LPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCEVTVPAQNTGLGPEKTSFF
Sbjct: 86 LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 145
Query: 657 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 836
QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI
Sbjct: 146 QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 205
Query: 837 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 1016
YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT
Sbjct: 206 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 265
Query: 1017 FPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVEAK 1148
FPLAEKVKAFLADPSAFV APAKVEAK
Sbjct: 266 FPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVEAK 308
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,506,649
Number of extensions: 1220768
Number of successful extensions: 5548
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5506
Number of HSP's successfully gapped: 32
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000678
(1292 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens]. 527 e-150
Alignment gi|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens]. 527 e-150
Alignment gi|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens]. 52 1e-06
>ref|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens].
Length = 317
Score = 527 bits (1358), Expect = e-150
Identities = 274/302 (90%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens].
Length = 317
Score = 527 bits (1358), Expect = e-150
Identities = 274/302 (90%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens].
Length = 239
Score = 52.0 bits (123), Expect = 1e-06
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 5/193 (2%)
Frame = +3
Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 449
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 450 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
E L ++ +RG VG +FT E+ + K TV
Sbjct: 82 SDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWF--TKYTEMDYARAGNKAAFTVSLDP 139
Query: 624 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 794
L S + LG+ T + RG + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAE 199
Query: 795 FGLIIQQVFDNGS 833
F + I+ ++D+ S
Sbjct: 200 FKVTIKYMWDSQS 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,750,015
Number of extensions: 1190520
Number of successful extensions: 5407
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5370
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000678
(1292 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus]. 518 e-147
Alignment gi|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like... 514 e-146
Alignment gi|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-l... 514 e-146
Alignment gi|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog i... 50 3e-06
Alignment gi|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [... 50 5e-06
>ref|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus].
Length = 317
Score = 518 bits (1335), Expect = e-147
Identities = 269/302 (89%), Positives = 271/302 (89%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVET+YTFPL EKVKAFLADPSAF APAK E
Sbjct: 241 IINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
Length = 317
Score = 514 bits (1325), Expect = e-146
Identities = 268/302 (88%), Positives = 270/302 (89%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF APAK E
Sbjct: 241 IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
Length = 317
Score = 514 bits (1325), Expect = e-146
Identities = 268/302 (88%), Positives = 270/302 (89%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF APAK E
Sbjct: 241 IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299
Query: 1143 AK 1148
AK
Sbjct: 300 AK 301
>ref|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog isoform 2 [Mus
musculus].
Length = 239
Score = 50.4 bits (119), Expect = 3e-06
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Frame = +3
Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 449
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 450 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
E L ++ +RG VG +FT E+ + K +TV
Sbjct: 82 SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139
Query: 624 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 794
L S + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAE 199
Query: 795 FGLIIQQVFD 824
F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209
>ref|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [Mus musculus].
Length = 239
Score = 49.7 bits (117), Expect = 5e-06
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Frame = +3
Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 449
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 450 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
E L ++ +RG VG +FT E+ + K +TV
Sbjct: 82 SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139
Query: 624 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 794
L S + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGDEMAE 199
Query: 795 FGLIIQQVFD 824
F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,226,993
Number of extensions: 1015287
Number of successful extensions: 4764
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4728
Number of HSP's successfully gapped: 5
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000678
(1292 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa]. 532 e-151
Alignment gi|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa]. 49 5e-06
>ref|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa].
Length = 318
Score = 532 bits (1370), Expect = e-151
Identities = 275/302 (91%), Positives = 275/302 (91%)
Frame = +3
Query: 243 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 423 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 603 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 783 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 963 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV APAKVE
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAAPAKVE 300
Query: 1143 AK 1148
AK
Sbjct: 301 AK 302
>ref|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa].
Length = 241
Score = 49.3 bits (116), Expect = 5e-06
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 8/193 (4%)
Frame = +3
Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAI-RGH 446
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+ R
Sbjct: 23 KQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 447 LEN-NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
E L ++ +RG VG +FT E+ + K TV N
Sbjct: 82 CEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYGEMDYARAGNKATFTV---N 136
Query: 624 TGLGP------EKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNIS 785
GP + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 137 LDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYE 196
Query: 786 PFSFGLIIQQVFD 824
F + I+ ++D
Sbjct: 197 MAEFKVTIRYMWD 209
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,279,376
Number of extensions: 1230919
Number of successful extensions: 3567
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3535
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000678
(1292 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 652 0.0
Sscrofa_Chr08 535 e-149
Sscrofa_Chr17 68 1e-08
>Sscrofa_Chr14
|| Length = 153851969
Score = 652 bits (329), Expect = 0.0
Identities = 478/528 (90%), Gaps = 16/528 (3%)
Strand = Plus / Minus
Query: 169 gctctcgccaggcgtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccct 228
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 120959406 gctctcaccaggcgtcctcgtgtgagtgacatcatctttaaaccctgcgtggcaattccg 120959347
Query: 229 gacgcaccgccgtgatgcccagggaagacagggcgacctggaagtccaactacttcctta 288
||||||| ||||||||||||||||||||| |||| ||| |||||||||||| ||||||||
Sbjct: 120959346 gacgcactgccgtgatgcccagggaagacggggcaacccggaagtccaactgcttcctta 120959287
Query: 289 agataatccaacttctggatgattatccgaaatgcttcattgtgggagcagacaatgtgg 348
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 120959286 agataatccaacttctggatgattatctgaaatgcttcattgtgggagcagacaatgtgg 120959227
Query: 349 gctccaagcagatgcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatgg 408
||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 120959226 gctccaatcagatgcagcagatccacatgtccctccgcgggaaggccgtggtgctgacgg 120959167
Query: 409 gcaagaacaccatgatgc----gcaaggccatccgagggcacctggaaaacaacccagcc 464
|||||||||||||||||| |||||||||||| |||||| |||||| |
Sbjct: 120959166 gcaagaacaccatgatgcacatgcaaggccatcc-----------gaaaaccacccagtc 120959118
Query: 465 ctggagaaactgttgcctcacatccgggggaacgtgggctttgtgttcaccaaggaggac 524
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 120959117 ctggagaaacggttgcctcacatccgggggaacgtgggctttgtattcaccaaggaggac 120959058
Query: 525 ctcactgagatcagggacatgctgctggccaataaggtgccagctgccgcccgtgctggt 584
||||||||| ||| ||||||||| ||||||| ||||||||||||||| |||| ||||| |
Sbjct: 120959057 ctcactgagttca-ggacatgcttctggccagtaaggtgccagctgctgcccatgctgct 120958999
Query: 585 gccatagccccatgcgaagtcactgtacctgcccagaacactggtctggggcctgagaag 644
|||||||||| || ||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 120958998 gccatagccctgtgtgaagtcactgtgcttgcccagaacactggtctggggcccaagaag 120958939
Query: 645 acctccttcttccaggctttaggcatcaccactaaaatctccaggggc 692
|||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 120958938 acctcctttttccaggctttaggcatcaccactaaaatttccaggggc 120958891
Score = 400 bits (202), Expect = e-109
Identities = 310/344 (90%), Gaps = 14/344 (4%)
Strand = Plus / Minus
Query: 726 aagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaacatctcc 785
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 120958250 aagactggagacaaagtgggagccagtgaagccacgttgctgaacac---------ctcc 120958200
Query: 786 cccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctacaaccct 845
|||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 120958199 cccttctcctctgggctgatcatc-agcgggtgtttga---tggcagcatctacaaccct 120958144
Query: 846 gaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtccgcaat 905
|||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct: 120958143 gaagtgcttgacatcaccaaggaaactctgcattctcgcttcctgaacagtgtccgcaat 120958084
Query: 906 gttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccattctatc 965
|||||| | ||||| ||||| | | ||||||||||||||||||||| || ||||||||||
Sbjct: 120958083 gttgcccgtgtatgcctgcacactagttacccaactgttgcatctgcactccattctatc 120958024
Query: 966 atcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcccactt 1025
||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 120958023 atcaa-ggatacaagtgggtcctggctttgtctgtggagactgattacaccttcccactt 120957965
Query: 1026 gctgaaaaggtcaaggccttcttggctgatccatctgcctttgt 1069
|||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 120957964 gctgaaaaagtcaaggccttcttggctgatccatctgcatttgt 120957921
Score = 157 bits (79), Expect = 2e-35
Identities = 124/134 (92%), Gaps = 5/134 (3%)
Strand = Plus / Minus
Query: 1124 agccccagccaaggttgaagccaaaggaggagtcggaggagtcggacgaggatatgggat 1183
||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||
Sbjct: 120957866 agccccagccaaggttggagc-aaaggaggagtcagaggagtcgggcgaggatatgggat 120957808
Query: 1184 ttggtctctttgactaatttccaaaaagc-accaagtcagccagctttatttgtgaaaca 1242
|||||||| ||| ||||| ||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 120957807 ttggtctc--tgattaattaccaaaaagcaaccaagtcagccagcttta-ttgtgaaaca 120957751
Query: 1243 aagaaataaaggct 1256
||||||||||||||
Sbjct: 120957750 aagaaataaaggct 120957737
Score = 111 bits (56), Expect = 1e-21
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 677 taaaatctccaggggcaccattgaaatcctgagtgatgtgcagctgattaagactggaga 736
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 120958638 taaaatctccaggggcacaattgaaatcctgagtgatgtgcagctcattaagactggaga 120958579
Query: 737 caaa 740
||||
Sbjct: 120958578 caaa 120958575
Score = 71.9 bits (36), Expect = 8e-10
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 285 cttaagataatccaacttctggatgattatccgaaatgcttcattgtgggagcaga 340
|||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 109965555 cttaagatcatccaactattgggtgattatccaaaatgcttcattgtgggagcaga 109965500
>Sscrofa_Chr08
|| Length = 148491826
Score = 535 bits (270), Expect = e-149
Identities = 737/889 (82%), Gaps = 29/889 (3%)
Strand = Plus / Minus
Query: 182 gtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccctgacgcaccgccgt 241
||||| |||| |||||||| |||||||||| |||| ||||||||||||| ||||||| ||
Sbjct: 145199002 gtccttgtgtaagtgacattgtctttaaacgctgcctggcaatccctgatgcaccgctgt 145198943
Query: 242 gatgcccagggaagacagggcgacctggaagtccaactacttccttaagataatccaact 301
| | ||||||| ||||||| ||||||| |||||| ||||||||||||| | ||| |||
Sbjct: 145198942 ggttcccagggcagacaggatgacctgggagtccagctacttccttaaggtcatctgact 145198883
Query: 302 tctggatgattatccgaaatgcttcattgtgggagcagacaatgtgggctccaagcagat 361
|||||||||||||||||||||||||| || ||||||||||| |||| | |
Sbjct: 145198882 tctggatgattatccgaaatgcttcactgccggagcagacaacgtggacac--------- 145198832
Query: 362 gcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatgggcaagaacaccat 421
||||||| | | ||| || |||| | || ||||| |||||||| || | |||
Sbjct: 145198831 -------atccgcacgcccctcagcaggaa-gacgaggtgcggatgggcaggagcgccag 145198780
Query: 422 gatgcgcaaggccatccgagggcacctggaaaacaacccagccctggagaaactgttgcc 481
||||||| |||||||||||||||||||| | || | | || |||||||||| ||||||
Sbjct: 145198779 gatgcgcgaggccatccgagggcacctgcgga-cagcgccgctctggagaaacagttgcc 145198721
Query: 482 tcacatccg-ggggaacgtgggctttgtgttcaccaaggaggacctcactgagatcaggg 540
|||||||| ||||| |||||||||| |||||||||||||||||||||||||| || |
Sbjct: 145198720 tcacatcccaggggagggtgggctttgcattcaccaaggaggacctcactgagattagag 145198661
Query: 541 acatgctgctggccaataaggtgccagctgccgcccgtgctggtgccatagccccatgcg 600
||| |||||||||| ||||||||| ||||| || ||| |||||||||||||| |||
Sbjct: 145198660 acagcctgctggccagtaaggtgcccactgccacctgtgttggtgccatagccctgtgca 145198601
Query: 601 aagtcactgtacctgcccagaacactggtctggggcctgagaagacctccttcttccagg 660
||||||||| || ||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 145198600 gagtcactgtgcccgcccagaacacgagtctggggcccgagaagacccccttcttccagg 145198541
Query: 661 ctttaggcatcaccactaaaatctccaggggcaccattgaaatcctgagtgatgtgcagc 720
|||||||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 145198540 ctttaggcatcaccgctgaaatctccaggggcaccgtcgaaatcctgagggatgtgcagc 145198481
Query: 721 tgattaagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaaca 780
|||||||||| ||||||| |||||||||||| | |||||| |||||||||| |||||
Sbjct: 145198480 tgattaagac-ggagacagagtgggagccagcggagccacattgctgaacaccctgaacc 145198422
Query: 781 tctcccccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctaca 840
|||||||| ||| |||||||| ||||||| ||||| ||||||| ||||||||| ||
Sbjct: 145198421 tctcccccagctcgtttgggctcatcatccggcaggggtttgactgcggcagcatcgacc 145198362
Query: 841 accctgaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtcc 900
| ||||| ||||||||| |||| ||||| |||||| ||||| | ||||||| |||
Sbjct: 145198361 atcctgacgtgcttgacgtcacagaggagactctggattct------ccggagggtatcc 145198308
Query: 901 gcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccatt 960
| | |||||||||| |||||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 145198307 gagagcttgccagcgtgtgtctgcagattggctacccagctgttgaatctgtaccccatt 145198248
Query: 961 ctatcatcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcc 1020
||||||||| ||||||||| |||||||||||||||| |||| || | | ||||| |||
Sbjct: 145198247 ctatcatcattgggtacaaatgggtcctggctttgtc--tggagacaggtaacaccgtcc 145198190
Query: 1021 cacttgctgaaaaggtcaaggccttcttggctgatccatctgcctttgt 1069
| ||||||||||| |||||||| ||||||||| ||||||| || |||||
Sbjct: 145198189 c-cttgctgaaaaagtcaaggcattcttggctaatccatcagcatttgt 145198142
Score = 83.8 bits (42), Expect = 2e-13
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 1172 aggatatgggatttggtctctttgactaatttccaaaaagc-accaagtcagccagcttt 1230
|||||||||||||||||| ||||||||||| ||||| ||| ||||| ||||||||||||
Sbjct: 145198049 aggatatgggatttggtccctttgactaatcaccaaagagcaaccaactcagccagcttt 145197990
Query: 1231 atttgtgaaacaaa 1244
||||||| ||||||
Sbjct: 145197989 atttgtggaacaaa 145197976
>Sscrofa_Chr17
|| Length = 69701581
Score = 67.9 bits (34), Expect = 1e-08
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 891 gagggtgtccgcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatct 950
||||||||| ||| | |||||||| |||||| ||||||| || |||| || |||||||
Sbjct: 28509167 gagggtgtctgcagttttgccagcctatgtcggcagattaattgcccacctcttgcatca 28509108
Query: 951 gtaccccattctatcatcaatgggtacaagcgggtcctggctttgtctgtggaa 1004
| | ||||||||| ||||| |||||||| |||||||||||| |||| |||||
Sbjct: 28509107 ggatcccattctagcatcagcaggtacaagagggtcctggcttggtctatggaa 28509054
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,537,308
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 12
Length of query: 1292
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1271
Effective length of database: 2,808,413,156
Effective search space: 3569493121276
Effective search space used: 3569493121276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)