Animal-Genome cDNA 20110601C-000678


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000678
         (1292 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus].     531   e-151

>ref|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus].
          Length = 318

 Score =  531 bits (1369), Expect = e-151
 Identities = 274/302 (90%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAAPAATTAAPAKVE 300

Query: 1143 AK 1148
            AK
Sbjct: 301  AK 302


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,941,247
Number of extensions: 1413975
Number of successful extensions: 5700
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5650
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000678
         (1292 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal prot...   528   e-150
Alignment   gi|XP_863019.1| PREDICTED: similar to 60S acidic ribosomal prot...   490   e-138

>ref|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            1 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            7 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            6 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            2 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            14 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            13 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            12 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            11 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            2 [Canis familiaris].
          Length = 317

 Score =  528 bits (1359), Expect = e-150
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_863019.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
            9 [Canis familiaris].
          Length = 324

 Score =  490 bits (1261), Expect = e-138
 Identities = 257/284 (90%), Positives = 257/284 (90%)
 Frame = +3

Query: 297  QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 476
            QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL
Sbjct: 26   QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKL 85

Query: 477  LPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQNTGLGPEKTSFF 656
            LPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCEVTVPAQNTGLGPEKTSFF
Sbjct: 86   LPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFF 145

Query: 657  QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 836
            QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI
Sbjct: 146  QALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSI 205

Query: 837  YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 1016
            YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT
Sbjct: 206  YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYT 265

Query: 1017 FPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVEAK 1148
            FPLAEKVKAFLADPSAFV                  APAKVEAK
Sbjct: 266  FPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVEAK 308


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,506,649
Number of extensions: 1220768
Number of successful extensions: 5548
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5506
Number of HSP's successfully gapped: 32
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000678
         (1292 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens].      527   e-150
Alignment   gi|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens].      527   e-150
Alignment   gi|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens].       52   1e-06

>ref|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens].
          Length = 317

 Score =  527 bits (1358), Expect = e-150
 Identities = 274/302 (90%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens].
          Length = 317

 Score =  527 bits (1358), Expect = e-150
 Identities = 274/302 (90%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV-AAAPVAAATTAAPAAAAAPAKVE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens].
          Length = 239

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 5/193 (2%)
 Frame = +3

Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 449
           K N   ++ + +D Y   FI    N+ + +++ IR + +   +   GKN +M  A+    
Sbjct: 23  KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81

Query: 450 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
             E    L ++   +RG VG +FT     E+ +     K               TV    
Sbjct: 82  SDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWF--TKYTEMDYARAGNKAAFTVSLDP 139

Query: 624 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 794
             L     S     + LG+ T + RG + +LSD ++ K GD +   +A +L +       
Sbjct: 140 GPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAE 199

Query: 795 FGLIIQQVFDNGS 833
           F + I+ ++D+ S
Sbjct: 200 FKVTIKYMWDSQS 212


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,750,015
Number of extensions: 1190520
Number of successful extensions: 5407
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5370
Number of HSP's successfully gapped: 3
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000678
         (1292 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus].      518   e-147
Alignment   gi|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like...   514   e-146
Alignment   gi|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-l...   514   e-146
Alignment   gi|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog i...    50   3e-06
Alignment   gi|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [...    50   5e-06

>ref|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus].
          Length = 317

 Score =  518 bits (1335), Expect = e-147
 Identities = 269/302 (89%), Positives = 271/302 (89%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVET+YTFPL EKVKAFLADPSAF                   APAK E
Sbjct: 241  IINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
          Length = 317

 Score =  514 bits (1325), Expect = e-146
 Identities = 268/302 (88%), Positives = 270/302 (89%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF                   APAK E
Sbjct: 241  IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
          Length = 317

 Score =  514 bits (1325), Expect = e-146
 Identities = 268/302 (88%), Positives = 270/302 (89%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF                   APAK E
Sbjct: 241  IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAFA-AAAPAAAATTAAPAAAAAPAKAE 299

Query: 1143 AK 1148
            AK
Sbjct: 300  AK 301


>ref|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog isoform 2 [Mus
           musculus].
          Length = 239

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
 Frame = +3

Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 449
           K N   ++ + +D Y   FI    N+ + +++ IR + +   +   GKN +M  A+    
Sbjct: 23  KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81

Query: 450 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
             E    L ++   +RG VG +FT     E+ +     K              +TV    
Sbjct: 82  SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139

Query: 624 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 794
             L     S     + LG+ T + +G + +LSD ++ K GD +   +A +L +       
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAE 199

Query: 795 FGLIIQQVFD 824
           F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209


>ref|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [Mus musculus].
          Length = 239

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
 Frame = +3

Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 449
           K N   ++ + +D Y   FI    N+ + +++ IR + +   +   GKN +M  A+    
Sbjct: 23  KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81

Query: 450 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
             E    L ++   +RG VG +FT     E+ +     K              +TV    
Sbjct: 82  SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139

Query: 624 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 794
             L     S     + LG+ T + +G + +LSD ++ K GD +   +A +L +       
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGDEMAE 199

Query: 795 FGLIIQQVFD 824
           F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,226,993
Number of extensions: 1015287
Number of successful extensions: 4764
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4728
Number of HSP's successfully gapped: 5
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000678
         (1292 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa].     532   e-151
Alignment   gi|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa].              49   5e-06

>ref|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa].
          Length = 318

 Score =  532 bits (1370), Expect = e-151
 Identities = 275/302 (91%), Positives = 275/302 (91%)
 Frame = +3

Query: 243  MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 422
            MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1    MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60

Query: 423  MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 602
            MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP         PCE
Sbjct: 61   MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120

Query: 603  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 782
            VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121  VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180

Query: 783  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 962
            SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181  SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240

Query: 963  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVXXXXXXXXXXXXXXXXXXAPAKVE 1142
            IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFV                  APAKVE
Sbjct: 241  IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAAPAKVE 300

Query: 1143 AK 1148
            AK
Sbjct: 301  AK 302


>ref|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa].
          Length = 241

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 8/193 (4%)
 Frame = +3

Query: 270 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAI-RGH 446
           K N   ++ + +D Y   FI    N+ + +++ IR + +   +   GKN +M  A+ R  
Sbjct: 23  KQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81

Query: 447 LEN-NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 623
            E     L ++   +RG VG +FT     E+ +     K               TV   N
Sbjct: 82  CEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYGEMDYARAGNKATFTV---N 136

Query: 624 TGLGP------EKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNIS 785
              GP            + LG+ T + +G + +LSD ++ K GD +   +A +L +    
Sbjct: 137 LDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYE 196

Query: 786 PFSFGLIIQQVFD 824
              F + I+ ++D
Sbjct: 197 MAEFKVTIRYMWD 209


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,279,376
Number of extensions: 1230919
Number of successful extensions: 3567
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3535
Number of HSP's successfully gapped: 2
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000678
         (1292 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         652   0.0  
Sscrofa_Chr08                                                         535   e-149
Sscrofa_Chr17                                                          68   1e-08

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  652 bits (329), Expect = 0.0
 Identities = 478/528 (90%), Gaps = 16/528 (3%)
 Strand = Plus / Minus

                                                                             
Query: 169       gctctcgccaggcgtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccct 228
                 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || 
Sbjct: 120959406 gctctcaccaggcgtcctcgtgtgagtgacatcatctttaaaccctgcgtggcaattccg 120959347

                                                                             
Query: 229       gacgcaccgccgtgatgcccagggaagacagggcgacctggaagtccaactacttcctta 288
                 ||||||| ||||||||||||||||||||| |||| ||| |||||||||||| ||||||||
Sbjct: 120959346 gacgcactgccgtgatgcccagggaagacggggcaacccggaagtccaactgcttcctta 120959287

                                                                             
Query: 289       agataatccaacttctggatgattatccgaaatgcttcattgtgggagcagacaatgtgg 348
                 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 120959286 agataatccaacttctggatgattatctgaaatgcttcattgtgggagcagacaatgtgg 120959227

                                                                             
Query: 349       gctccaagcagatgcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatgg 408
                 ||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||| ||
Sbjct: 120959226 gctccaatcagatgcagcagatccacatgtccctccgcgggaaggccgtggtgctgacgg 120959167

                                                                             
Query: 409       gcaagaacaccatgatgc----gcaaggccatccgagggcacctggaaaacaacccagcc 464
                 ||||||||||||||||||    ||||||||||||           |||||| |||||| |
Sbjct: 120959166 gcaagaacaccatgatgcacatgcaaggccatcc-----------gaaaaccacccagtc 120959118

                                                                             
Query: 465       ctggagaaactgttgcctcacatccgggggaacgtgggctttgtgttcaccaaggaggac 524
                 |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 120959117 ctggagaaacggttgcctcacatccgggggaacgtgggctttgtattcaccaaggaggac 120959058

                                                                             
Query: 525       ctcactgagatcagggacatgctgctggccaataaggtgccagctgccgcccgtgctggt 584
                 ||||||||| ||| ||||||||| ||||||| ||||||||||||||| |||| ||||| |
Sbjct: 120959057 ctcactgagttca-ggacatgcttctggccagtaaggtgccagctgctgcccatgctgct 120958999

                                                                             
Query: 585       gccatagccccatgcgaagtcactgtacctgcccagaacactggtctggggcctgagaag 644
                 ||||||||||  || ||||||||||| | ||||||||||||||||||||||||  |||||
Sbjct: 120958998 gccatagccctgtgtgaagtcactgtgcttgcccagaacactggtctggggcccaagaag 120958939

                                                                 
Query: 645       acctccttcttccaggctttaggcatcaccactaaaatctccaggggc 692
                 |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 120958938 acctcctttttccaggctttaggcatcaccactaaaatttccaggggc 120958891



 Score =  400 bits (202), Expect = e-109
 Identities = 310/344 (90%), Gaps = 14/344 (4%)
 Strand = Plus / Minus

                                                                             
Query: 726       aagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaacatctcc 785
                 ||||||||||||||||||||||||||||||||||||||||||||||          ||||
Sbjct: 120958250 aagactggagacaaagtgggagccagtgaagccacgttgctgaacac---------ctcc 120958200

                                                                             
Query: 786       cccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctacaaccct 845
                 |||||||||| ||||||||||||| ||| |||||||||   |||||||||||||||||||
Sbjct: 120958199 cccttctcctctgggctgatcatc-agcgggtgtttga---tggcagcatctacaaccct 120958144

                                                                             
Query: 846       gaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtccgcaat 905
                 |||||||||||||||||| |||||||||||||||||||||||||| |  |||||||||||
Sbjct: 120958143 gaagtgcttgacatcaccaaggaaactctgcattctcgcttcctgaacagtgtccgcaat 120958084

                                                                             
Query: 906       gttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccattctatc 965
                 |||||| | ||||| ||||| | | ||||||||||||||||||||| || ||||||||||
Sbjct: 120958083 gttgcccgtgtatgcctgcacactagttacccaactgttgcatctgcactccattctatc 120958024

                                                                             
Query: 966       atcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcccactt 1025
                 ||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 120958023 atcaa-ggatacaagtgggtcctggctttgtctgtggagactgattacaccttcccactt 120957965

                                                             
Query: 1026      gctgaaaaggtcaaggccttcttggctgatccatctgcctttgt 1069
                 |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 120957964 gctgaaaaagtcaaggccttcttggctgatccatctgcatttgt 120957921



 Score =  157 bits (79), Expect = 2e-35
 Identities = 124/134 (92%), Gaps = 5/134 (3%)
 Strand = Plus / Minus

                                                                             
Query: 1124      agccccagccaaggttgaagccaaaggaggagtcggaggagtcggacgaggatatgggat 1183
                 ||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||
Sbjct: 120957866 agccccagccaaggttggagc-aaaggaggagtcagaggagtcgggcgaggatatgggat 120957808

                                                                             
Query: 1184      ttggtctctttgactaatttccaaaaagc-accaagtcagccagctttatttgtgaaaca 1242
                 ||||||||  ||| ||||| ||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 120957807 ttggtctc--tgattaattaccaaaaagcaaccaagtcagccagcttta-ttgtgaaaca 120957751

                               
Query: 1243      aagaaataaaggct 1256
                 ||||||||||||||
Sbjct: 120957750 aagaaataaaggct 120957737



 Score =  111 bits (56), Expect = 1e-21
 Identities = 62/64 (96%)
 Strand = Plus / Minus

                                                                             
Query: 677       taaaatctccaggggcaccattgaaatcctgagtgatgtgcagctgattaagactggaga 736
                 |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 120958638 taaaatctccaggggcacaattgaaatcctgagtgatgtgcagctcattaagactggaga 120958579

                     
Query: 737       caaa 740
                 ||||
Sbjct: 120958578 caaa 120958575



 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                         
Query: 285       cttaagataatccaacttctggatgattatccgaaatgcttcattgtgggagcaga 340
                 |||||||| ||||||||  ||| ||||||||| |||||||||||||||||||||||
Sbjct: 109965555 cttaagatcatccaactattgggtgattatccaaaatgcttcattgtgggagcaga 109965500


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  535 bits (270), Expect = e-149
 Identities = 737/889 (82%), Gaps = 29/889 (3%)
 Strand = Plus / Minus

                                                                             
Query: 182       gtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccctgacgcaccgccgt 241
                 ||||| |||| |||||||| |||||||||| |||| ||||||||||||| ||||||| ||
Sbjct: 145199002 gtccttgtgtaagtgacattgtctttaaacgctgcctggcaatccctgatgcaccgctgt 145198943

                                                                             
Query: 242       gatgcccagggaagacagggcgacctggaagtccaactacttccttaagataatccaact 301
                 | | ||||||| |||||||  ||||||| |||||| ||||||||||||| | |||  |||
Sbjct: 145198942 ggttcccagggcagacaggatgacctgggagtccagctacttccttaaggtcatctgact 145198883

                                                                             
Query: 302       tctggatgattatccgaaatgcttcattgtgggagcagacaatgtgggctccaagcagat 361
                 |||||||||||||||||||||||||| ||  ||||||||||| |||| | |         
Sbjct: 145198882 tctggatgattatccgaaatgcttcactgccggagcagacaacgtggacac--------- 145198832

                                                                             
Query: 362       gcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatgggcaagaacaccat 421
                        ||||||| | | ||| || |||| | || ||||| |||||||| || | ||| 
Sbjct: 145198831 -------atccgcacgcccctcagcaggaa-gacgaggtgcggatgggcaggagcgccag 145198780

                                                                             
Query: 422       gatgcgcaaggccatccgagggcacctggaaaacaacccagccctggagaaactgttgcc 481
                 ||||||| ||||||||||||||||||||   | || | | || |||||||||| ||||||
Sbjct: 145198779 gatgcgcgaggccatccgagggcacctgcgga-cagcgccgctctggagaaacagttgcc 145198721

                                                                             
Query: 482       tcacatccg-ggggaacgtgggctttgtgttcaccaaggaggacctcactgagatcaggg 540
                 ||||||||  |||||  ||||||||||  |||||||||||||||||||||||||| || |
Sbjct: 145198720 tcacatcccaggggagggtgggctttgcattcaccaaggaggacctcactgagattagag 145198661

                                                                             
Query: 541       acatgctgctggccaataaggtgccagctgccgcccgtgctggtgccatagccccatgcg 600
                 |||  |||||||||| |||||||||  ||||| || ||| ||||||||||||||  ||| 
Sbjct: 145198660 acagcctgctggccagtaaggtgcccactgccacctgtgttggtgccatagccctgtgca 145198601

                                                                             
Query: 601       aagtcactgtacctgcccagaacactggtctggggcctgagaagacctccttcttccagg 660
                  ||||||||| || |||||||||||  |||||||||| ||||||||| ||||||||||||
Sbjct: 145198600 gagtcactgtgcccgcccagaacacgagtctggggcccgagaagacccccttcttccagg 145198541

                                                                             
Query: 661       ctttaggcatcaccactaaaatctccaggggcaccattgaaatcctgagtgatgtgcagc 720
                 |||||||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 145198540 ctttaggcatcaccgctgaaatctccaggggcaccgtcgaaatcctgagggatgtgcagc 145198481

                                                                             
Query: 721       tgattaagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaaca 780
                 |||||||||| ||||||| |||||||||||| | |||||| ||||||||||   ||||| 
Sbjct: 145198480 tgattaagac-ggagacagagtgggagccagcggagccacattgctgaacaccctgaacc 145198422

                                                                             
Query: 781       tctcccccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctaca 840
                 ||||||||  ||| |||||||| ||||||| ||||| |||||||   ||||||||| || 
Sbjct: 145198421 tctcccccagctcgtttgggctcatcatccggcaggggtttgactgcggcagcatcgacc 145198362

                                                                             
Query: 841       accctgaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtcc 900
                 | ||||| ||||||||| |||| ||||| |||||| |||||      | ||||||| |||
Sbjct: 145198361 atcctgacgtgcttgacgtcacagaggagactctggattct------ccggagggtatcc 145198308

                                                                             
Query: 901       gcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccatt 960
                 |  |  |||||||||| |||||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 145198307 gagagcttgccagcgtgtgtctgcagattggctacccagctgttgaatctgtaccccatt 145198248

                                                                             
Query: 961       ctatcatcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcc 1020
                 ||||||||| |||||||||  ||||||||||||||||  |||| || | | ||||| |||
Sbjct: 145198247 ctatcatcattgggtacaaatgggtcctggctttgtc--tggagacaggtaacaccgtcc 145198190

                                                                  
Query: 1021      cacttgctgaaaaggtcaaggccttcttggctgatccatctgcctttgt 1069
                 | ||||||||||| |||||||| ||||||||| ||||||| || |||||
Sbjct: 145198189 c-cttgctgaaaaagtcaaggcattcttggctaatccatcagcatttgt 145198142



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 67/74 (90%), Gaps = 1/74 (1%)
 Strand = Plus / Minus

                                                                             
Query: 1172      aggatatgggatttggtctctttgactaatttccaaaaagc-accaagtcagccagcttt 1230
                 |||||||||||||||||| |||||||||||  ||||| ||| ||||| ||||||||||||
Sbjct: 145198049 aggatatgggatttggtccctttgactaatcaccaaagagcaaccaactcagccagcttt 145197990

                               
Query: 1231      atttgtgaaacaaa 1244
                 ||||||| ||||||
Sbjct: 145197989 atttgtggaacaaa 145197976


>Sscrofa_Chr17 
||          Length = 69701581

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 94/114 (82%)
 Strand = Plus / Minus

                                                                            
Query: 891      gagggtgtccgcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatct 950
                ||||||||| ||| | |||||||| |||||| |||||||  || |||| || ||||||| 
Sbjct: 28509167 gagggtgtctgcagttttgccagcctatgtcggcagattaattgcccacctcttgcatca 28509108

                                                                      
Query: 951      gtaccccattctatcatcaatgggtacaagcgggtcctggctttgtctgtggaa 1004
                | | ||||||||| |||||   |||||||| |||||||||||| |||| |||||
Sbjct: 28509107 ggatcccattctagcatcagcaggtacaagagggtcctggcttggtctatggaa 28509054


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,537,308
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 12
Length of query: 1292
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1271
Effective length of database: 2,808,413,156
Effective search space: 3569493121276
Effective search space used: 3569493121276
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)