Animal-Genome cDNA 20110601C-000692


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000692
         (1867 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001095345.2| thioredoxin interacting protein [Bos taurus].     716   0.0  
Alignment   gi|NP_001178963.1| arrestin domain-containing protein 4 [Bos ta...   299   5e-81
Alignment   gi|XP_002696551.1| PREDICTED: arrestin domain containing 4 [Bos...   299   5e-81
Alignment   gi|NP_001069725.1| arrestin domain-containing protein 3 [Bos ta...   278   9e-75
Alignment   gi|NP_001075061.1| arrestin domain-containing protein 2 [Bos ta...   247   3e-65
Alignment   gi|NP_001073834.1| arrestin domain-containing protein 1 [Bos ta...    86   1e-16

>ref|NP_001095345.2| thioredoxin interacting protein [Bos taurus].
          Length = 391

 Score =  716 bits (1849), Expect = 0.0
 Identities = 352/391 (90%), Positives = 360/391 (92%)
 Frame = +2

Query: 278  MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1    MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
            QQCKQTLDYLRYEDTLLLDD P GENEMVI+RPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61   QQCKQTLDYLRYEDTLLLDDQPAGENEMVILRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            VDYWVKAFLDRPSQPTQETKK+FEVMDLVDVNTPDL+ PVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121  VDYWVKAFLDRPSQPTQETKKNFEVMDLVDVNTPDLLEPVSAKKEKKVSCMFIPDGRVSV 180

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SARIDRKGFCEGDEINIHADFENTCSRIV+PKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181  SARIDRKGFCEGDEINIHADFENTCSRIVIPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
            HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI    
Sbjct: 241  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300

Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
                              WVDLNIPDT EAPPCYMD I EDHRLESPTTPLL+DTDGSQD
Sbjct: 301  GLSSRTSSMASQTSSEMSWVDLNIPDTLEAPPCYMDSIAEDHRLESPTTPLLEDTDGSQD 360

Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
            SPIFMYAPEF+FMPPPTYSEVDP +LNNNVQ
Sbjct: 361  SPIFMYAPEFRFMPPPTYSEVDPSVLNNNVQ 391


>ref|NP_001178963.1| arrestin domain-containing protein 4 [Bos taurus].
          Length = 413

 Score =  299 bits (766), Expect = 5e-81
 Identities = 160/386 (41%), Positives = 230/386 (59%), Gaps = 8/386 (2%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS---- 457
            ++KS  +VF D  K  Y  GE VAG V++E  E   ++A+R+ A G A   W   +    
Sbjct: 17   RVKSLGLVFEDERKGCYSSGETVAGHVLLEAAEPVALRALRLEAQGRATASWGSSAGAAA 76

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
                  ++YL     L L + P GE  +++++PG K+E+ F F+LP  PL TSF GKYG 
Sbjct: 77   PAAASEVEYLNV--CLSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTGKYGS 132

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            + Y V+A L+RP  P Q  K+  +V+  +DVNTP L+ PV   +EK V C F   G VS+
Sbjct: 133  IQYCVRAILERPQAPDQSVKRELQVVSHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSL 192

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SA+I+RKG+C G+ I I+A+ EN  SR++VPKAAI    TYLA+G+TK +   +++VRGN
Sbjct: 193  SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRLMVANVRGN 252

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 1171
            HI SG+  +W GK+L++  + PSIL C I+RV Y L +Y+ +PG+KK++L+LPLVI    
Sbjct: 253  HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVHYSLAVYIHIPGAKKLMLELPLVIGTVP 312

Query: 1172 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 1348
                                W+ L +P+ PEAPP Y D++ E+   +  P  P   + +G
Sbjct: 313  YNGFGSRNSSVASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSQHVPPYPQPPNCEG 372

Query: 1349 SQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                P+F    EF+F PPP YSEVDP
Sbjct: 373  ESCCPMFACIQEFRFQPPPLYSEVDP 398


>ref|XP_002696551.1| PREDICTED: arrestin domain containing 4 [Bos taurus].
          Length = 413

 Score =  299 bits (766), Expect = 5e-81
 Identities = 160/386 (41%), Positives = 230/386 (59%), Gaps = 8/386 (2%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS---- 457
            ++KS  +VF D  K  Y  GE VAG V++E  E   ++A+R+ A G A   W   +    
Sbjct: 17   RVKSLGLVFEDERKGCYSSGETVAGHVLLEAAEPVALRALRLEAQGRATASWGSSAGAAA 76

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
                  ++YL     L L + P GE  +++++PG K+E+ F F+LP  PL TSF GKYG 
Sbjct: 77   PAAASEVEYLNV--CLSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTGKYGS 132

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            + Y V+A L+RP  P Q  K+  +V+  +DVNTP L+ PV   +EK V C F   G VS+
Sbjct: 133  IQYCVRAILERPQAPDQSVKRELQVVSHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSL 192

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SA+I+RKG+C G+ I I+A+ EN  SR++VPKAAI    TYLA+G+TK +   +++VRGN
Sbjct: 193  SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRLMVANVRGN 252

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 1171
            HI SG+  +W GK+L++  + PSIL C I+RV Y L +Y+ +PG+KK++L+LPLVI    
Sbjct: 253  HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVHYSLAVYIHIPGAKKLMLELPLVIGTVP 312

Query: 1172 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 1348
                                W+ L +P+ PEAPP Y D++ E+   +  P  P   + +G
Sbjct: 313  YNGFGSRNSSVASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSQHVPPYPQPPNCEG 372

Query: 1349 SQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                P+F    EF+F PPP YSEVDP
Sbjct: 373  ESCCPMFACIQEFRFQPPPLYSEVDP 398


>ref|NP_001069725.1| arrestin domain-containing protein 3 [Bos taurus].
          Length = 414

 Score =  278 bits (712), Expect = 9e-75
 Identities = 154/397 (38%), Positives = 228/397 (57%), Gaps = 19/397 (4%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                   +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122

Query: 605  LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
            L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + 
Sbjct: 123  LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLY 182

Query: 785  CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
            C F   G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K 
Sbjct: 183  CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242

Query: 965  LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
            + Q ++++RG  + SG   +W GK L++  + PSIL C+I+RVEY L++YV +PG+  + 
Sbjct: 243  VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302

Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
            L+LPLVI                        W+ L++P+ PEAPP Y +++ E+ R  + 
Sbjct: 303  LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLGLSLPERPEAPPSYAEVVTEEQRRNNL 362

Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                  DD + +   P+F Y  EF+F+PPP YSE+DP
Sbjct: 363  APGSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399


>ref|NP_001075061.1| arrestin domain-containing protein 2 [Bos taurus].
          Length = 407

 Score =  247 bits (630), Expect = 3e-65
 Identities = 142/395 (35%), Positives = 219/395 (55%), Gaps = 13/395 (3%)
 Frame = +2

Query: 281  VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
            ++F K+K+F V+ +      E V+  G+ VAGRV++E+    R+ ++++ A G A V W 
Sbjct: 1    MLFDKVKAFVVLLDGASAGSEPVFSGGQAVAGRVLLELAGPARVSSLKLRARGRAHVHWT 60

Query: 449  QGSQQCKQTLDYLRYEDTLLLDDHPT-----GENEMVIMRPGNKYEYKFGFELPQGPLGT 613
            +       T     Y + + +  H       G  E   + PG ++E+ F F+LP   L T
Sbjct: 61   ESRSAGSSTAYTQSYSERVEVVSHRATLLAPGTGETTTLPPG-RHEFPFSFQLPP-TLVT 118

Query: 614  SFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMF 793
            SF+GK+G V Y +KA L RP  P + T+K F V++ VD+NTP L+AP +  +EK     +
Sbjct: 119  SFEGKHGSVRYCIKATLHRPWVPARRTRKVFTVIEPVDINTPALLAPQAGAREKIARSWY 178

Query: 794  IPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQ 973
               G VS+SA+IDRKG+  G+ I + A+ +N  +R V+P+AA+V   T++A G  K    
Sbjct: 179  SNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRA 238

Query: 974  KLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDL 1153
             ++S+ G  +  G  A W+G++LR+  + PSIL C +L V+Y L + V +PGS K++L+L
Sbjct: 239  VVASLSGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLEL 298

Query: 1154 PLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPT 1321
            PLVI                        W    +P+ PEAPP Y +++P++    +E   
Sbjct: 299  PLVIGTIPLHPFGSRSSSVGSHASFLMDWGLGILPERPEAPPEYSEVVPDEEVAAMEQSL 358

Query: 1322 TPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
             PLL D D S + P F Y  EF++ PPP YSE DP
Sbjct: 359  LPLLQDPDMSMEGPFFAYIQEFRYRPPPLYSEEDP 393


>ref|NP_001073834.1| arrestin domain-containing protein 1 [Bos taurus].
          Length = 426

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 2/293 (0%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
            +++ FEV  N    VY  GE + G V V +      +A+R+   G  +V     +     
Sbjct: 3    RVQLFEVRLNHGRVVYSPGEPLVGAVRVRLAAPLPFRAIRVTCTGSCRV--SNKANDSAW 60

Query: 473  TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
             ++   +   L L D  +         P  ++ + F F LP     TSF+G +G + + V
Sbjct: 61   VVEESYFNSALSLADKGS--------LPAGEHSFPFQFLLP-ATAPTSFEGPFGKIVHQV 111

Query: 653  KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
            +A +D P      +  + F ++  +++N+ PD+  P  A   KK S   +  G V ++A 
Sbjct: 112  RATIDTPRFSKDHQCSRVFYILSPLNLNSIPDIEQPNVASTTKKFSYKLVKTGSVVLTAS 171

Query: 827  IDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHII 1006
             D +G+  G  + + AD EN   +   P  A + +       +     + ++ V G  + 
Sbjct: 172  TDLRGYVVGQVLRLQADIENQSGKDTSPVVASLLQKVSYKARRWIYDVRTIAEVEGAGVK 231

Query: 1007 SGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
            +   A W+ + L     + ++ GC+++ V+Y+L + +  P   + ++ LP+ I
Sbjct: 232  AWRRAQWQEQVLVPALPQSALPGCSLIHVDYYLQVSLKQP---EAVVTLPVFI 281


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,804,836
Number of extensions: 1868605
Number of successful extensions: 4798
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4779
Number of HSP's successfully gapped: 6
Length of query: 622
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 514
Effective length of database: 14,107,870
Effective search space: 7251445180
Effective search space used: 7251445180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000692
         (1867 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533037.2| PREDICTED: similar to thioredoxin interacting p...   721   0.0  
Alignment   gi|XP_859453.1| PREDICTED: similar to thioredoxin interacting p...   706   0.0  
Alignment   gi|XP_545831.2| PREDICTED: similar to arrestin domain containin...   297   2e-80
Alignment   gi|XP_546029.1| PREDICTED: similar to arrestin domain containin...   276   6e-74
Alignment   gi|XP_857636.1| PREDICTED: similar to arrestin domain containin...   262   9e-70
Alignment   gi|XP_865525.1| PREDICTED: similar to arrestin domain containin...   233   4e-61
Alignment   gi|XP_865505.1| PREDICTED: similar to arrestin domain containin...   231   2e-60
Alignment   gi|XP_857476.1| PREDICTED: similar to arrestin domain containin...   230   4e-60
Alignment   gi|XP_852327.1| PREDICTED: similar to arrestin domain containin...   229   5e-60
Alignment   gi|XP_857559.1| PREDICTED: similar to arrestin domain containin...   103   7e-22

>ref|XP_533037.2| PREDICTED: similar to thioredoxin interacting protein isoform 2
            [Canis familiaris].
          Length = 391

 Score =  721 bits (1861), Expect = 0.0
 Identities = 353/391 (90%), Positives = 363/391 (92%)
 Frame = +2

Query: 278  MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            MVMFKKIKSFEVVFNDPEKVYG GEKVAGRV+VEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1    MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVVVEVCEVTRVKAVRILACGVAKVLWMQGS 60

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
            QQCKQT +YLR+EDTLLL+D PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61   QQCKQTSEYLRFEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            VDYWVKAFLDRPSQPTQETKK FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDG+VSV
Sbjct: 121  VDYWVKAFLDRPSQPTQETKKFFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGQVSV 180

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SARIDRKGFCEGDEI+IHADFENTCSRI+VPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181  SARIDRKGFCEGDEISIHADFENTCSRIMVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
            HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI    
Sbjct: 241  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300

Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
                              W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 301  GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 360

Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
            SPIFMYAPEFKFMPPPTY+EVDP ILNNNVQ
Sbjct: 361  SPIFMYAPEFKFMPPPTYTEVDPSILNNNVQ 391


>ref|XP_859453.1| PREDICTED: similar to thioredoxin interacting protein isoform 3
            [Canis familiaris].
          Length = 385

 Score =  706 bits (1822), Expect = 0.0
 Identities = 348/391 (89%), Positives = 358/391 (91%)
 Frame = +2

Query: 278  MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            MVMFKKIKSFEVVFNDPEKVYG GEKVAGRV+VEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1    MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVVVEVCEVTRVKAVRILACGVAKVLWMQGS 60

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
            QQCKQT +YLR+EDTLLL+D PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61   QQCKQTSEYLRFEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            VDYWVKAFLDRPSQPTQETKK FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDG+VSV
Sbjct: 121  VDYWVKAFLDRPSQPTQETKKFFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGQVSV 180

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SARIDRKGFCEGDEI+IHADFENTCSRI+VPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181  SARIDRKGFCEGDEISIHADFENTCSRIMVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
            HIISGTCASWRGKSLRVQKIRPSILGCNILR      IYVSVPGSKKVILDLPLVI    
Sbjct: 241  HIISGTCASWRGKSLRVQKIRPSILGCNILR------IYVSVPGSKKVILDLPLVIGSRS 294

Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
                              W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 295  GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 354

Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
            SPIFMYAPEFKFMPPPTY+EVDP ILNNNVQ
Sbjct: 355  SPIFMYAPEFKFMPPPTYTEVDPSILNNNVQ 385


>ref|XP_545831.2| PREDICTED: similar to arrestin domain containing 4 [Canis
            familiaris].
          Length = 412

 Score =  297 bits (761), Expect = 2e-80
 Identities = 158/386 (40%), Positives = 229/386 (59%), Gaps = 8/386 (2%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG----S 457
            ++KS  +VF D  K  Y  GE VAG V++E  E   ++++R+ A G A   W       +
Sbjct: 16   RVKSLGLVFEDERKGCYSSGETVAGHVLLEAAEPVALRSLRLEAHGRATAAWGPSPGAAA 75

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
                  ++YL     L L + P GE  +++++PG K+E+ F F+LP  PL TSF GKYG 
Sbjct: 76   PAAASEVEYLNVR--LSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTGKYGS 131

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            + Y V+A L+RP  P Q  K+  +V+  +DVNTP L+ PV   +EK V C F   G VS+
Sbjct: 132  IQYCVRAILERPKVPDQSVKRELQVISHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSL 191

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SA+I+RKG+C G+ I I+A+ EN  SR++VPKAAI    TYLA+G+TK +   +++VRGN
Sbjct: 192  SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGRTKSVRHMVANVRGN 251

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 1171
            HI SG   +W GK+L++  + PSIL C I+RV+Y L +Y+ +PG+KK++L+LPLVI    
Sbjct: 252  HIASGGTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTIP 311

Query: 1172 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 1348
                                W+ L +P+ PEAPP Y D++ E+      P  P   + +G
Sbjct: 312  FNGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPPNYADVVSEEEFCRHVPPYPQPPEGEG 371

Query: 1349 SQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                P+F    EF+F PPP YSE+DP
Sbjct: 372  EACCPVFACIQEFRFQPPPLYSEIDP 397


>ref|XP_546029.1| PREDICTED: similar to arrestin domain containing 3 isoform 1 [Canis
            familiaris].
          Length = 414

 Score =  276 bits (705), Expect = 6e-74
 Identities = 153/397 (38%), Positives = 227/397 (57%), Gaps = 19/397 (4%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                   +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122

Query: 605  LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
            L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + 
Sbjct: 123  LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182

Query: 785  CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
            C F   G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K 
Sbjct: 183  CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242

Query: 965  LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
            + Q ++++RG  + SG   +W GK L++  + PSIL C+I+RVEY L++YV +PG+  + 
Sbjct: 243  VKQLVANLRGESLSSGKTDTWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302

Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
            L+LPLVI                        W+ L++ + PEAPP Y +++ E+ R  + 
Sbjct: 303  LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLGLSLRERPEAPPSYAEVVTEEQRRNNL 362

Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                  DD + +   P+F Y  EF+F+PPP YSE+DP
Sbjct: 363  APVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399


>ref|XP_857636.1| PREDICTED: similar to arrestin domain containing 3 isoform 5 [Canis
            familiaris].
          Length = 408

 Score =  262 bits (669), Expect = 9e-70
 Identities = 150/397 (37%), Positives = 222/397 (55%), Gaps = 19/397 (4%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                   +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122

Query: 605  LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
            L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + 
Sbjct: 123  LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182

Query: 785  CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
            C F   G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K 
Sbjct: 183  CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242

Query: 965  LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
            + Q ++++RG  + SG   +W GK L++  + PSIL C+I+RV      YV +PG+  + 
Sbjct: 243  VKQLVANLRGESLSSGKTDTWNGKLLKIPPVSPSILDCSIIRV------YVDIPGAMDLF 296

Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
            L+LPLVI                        W+ L++ + PEAPP Y +++ E+ R  + 
Sbjct: 297  LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLGLSLRERPEAPPSYAEVVTEEQRRNNL 356

Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                  DD + +   P+F Y  EF+F+PPP YSE+DP
Sbjct: 357  APVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 393


>ref|XP_865525.1| PREDICTED: similar to arrestin domain containing 2 isoform 1 isoform
            3 [Canis familiaris].
          Length = 407

 Score =  233 bits (595), Expect = 4e-61
 Identities = 141/399 (35%), Positives = 218/399 (54%), Gaps = 17/399 (4%)
 Frame = +2

Query: 281  VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
            ++F K+K+F V  +      E V+  G+ VAGRV++E+    R+ A+++ A G A V W 
Sbjct: 1    MLFDKVKAFVVQLDGASAGAEPVFSGGQAVAGRVLLELAGPARVGALKLRARGRAHVHWT 60

Query: 449  QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
            +          +Q   + ++ + +  TLL  D  TGE   +   P  ++E+ F F+LP  
Sbjct: 61   ESRSAGSSTAYTQSYSERVEVVSHRATLLAPD--TGETTTL---PAGRHEFPFSFQLPP- 114

Query: 602  PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
             L TSF+GK+G V Y +KA L RP  P +  +K F V++ VD+NTP L+AP +   EK  
Sbjct: 115  TLVTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGALEKVA 174

Query: 782  SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
               +   G VS+SA+IDRKG+  G+ I + A+ +N  +R V+P+AA+V   T++A G  K
Sbjct: 175  RSWYSNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARK 234

Query: 962  VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
                 ++S+ G  +  G  A W+G++LR+  + PSIL C +L V+Y L + V +PG+ K+
Sbjct: 235  QKRAVVASLAGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKL 294

Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RL 1309
            +L+LPLVI                        W     P+ PEAPP Y +++ +     +
Sbjct: 295  LLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAV 354

Query: 1310 ESPTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
               + P L DTD S + P F Y  EF++ PPP YSE DP
Sbjct: 355  GQSSFPPLQDTDLSFEGPFFAYIQEFRYRPPPLYSEEDP 393


>ref|XP_865505.1| PREDICTED: similar to arrestin domain containing 2 isoform 1 isoform
            2 [Canis familiaris].
          Length = 407

 Score =  231 bits (589), Expect = 2e-60
 Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 15/397 (3%)
 Frame = +2

Query: 281  VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
            ++F K+K+F V  +      E V+  G+ VAGRV++E+    R+ A+++ A G A V W 
Sbjct: 1    MLFDKVKAFVVQLDGASAGAEPVFSGGQAVAGRVLLELAGPARVGALKLRARGRAHVHWT 60

Query: 449  QGSQQCKQTLDYLRYEDT-------LLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPL 607
            +       T     Y +        LLL    TGE   +   P  ++E+ F F+LP   L
Sbjct: 61   ESRSAGSSTAYTQSYSERVEVLNLPLLLLPADTGETTTL---PAGRHEFPFSFQLPP-TL 116

Query: 608  GTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSC 787
             TSF+GK+G V Y +KA L RP  P +  +K F V++ VD+NTP L+AP +   EK    
Sbjct: 117  VTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGALEKVARS 176

Query: 788  MFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVL 967
             +   G VS+SA+IDRKG+  G+ I + A+ +N  +R V+P+AA+V   T++A G  K  
Sbjct: 177  WYSNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQK 236

Query: 968  TQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVIL 1147
               ++S+ G  +  G  A W+G++LR+  + PSIL C +L V+Y L + V +PG+ K++L
Sbjct: 237  RAVVASLAGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKLLL 296

Query: 1148 DLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLES 1315
            +LPLVI                        W     P+ PEAPP Y +++ +     +  
Sbjct: 297  ELPLVIGTIPLHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAVGQ 356

Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
             + P L DTD S + P F Y  EF++ PPP YSE DP
Sbjct: 357  SSFPPLQDTDLSFEGPFFAYIQEFRYRPPPLYSEEDP 393


>ref|XP_857476.1| PREDICTED: similar to arrestin domain containing 3 isoform 2 [Canis
            familiaris].
          Length = 351

 Score =  230 bits (586), Expect = 4e-60
 Identities = 127/307 (41%), Positives = 186/307 (60%), Gaps = 16/307 (5%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                   +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122

Query: 605  LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
            L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + 
Sbjct: 123  LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182

Query: 785  CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
            C F   G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K 
Sbjct: 183  CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242

Query: 965  LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
            + Q ++++RG  + SG   +W GK L++  + PSIL C+I+RVEY L++YV +PG+  + 
Sbjct: 243  VKQLVANLRGESLSSGKTDTWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302

Query: 1145 LDLPLVI 1165
            L+LPLVI
Sbjct: 303  LNLPLVI 309


>ref|XP_852327.1| PREDICTED: similar to arrestin domain containing 2 isoform 2 isoform
            1 [Canis familiaris].
          Length = 402

 Score =  229 bits (585), Expect = 5e-60
 Identities = 139/390 (35%), Positives = 209/390 (53%), Gaps = 13/390 (3%)
 Frame = +2

Query: 296  IKSFEV-VFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG------ 454
            ++SF + +   P   Y  GE++ GRV++E     R++A+ + A G A   W++G      
Sbjct: 6    VRSFALELARGPGGAYRGGERLCGRVLLEAAAPLRVRALEVAARGGAATHWLEGRSVGIN 65

Query: 455  --SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGK 628
              S        YLR    LL D   TGE   +   P  ++E+ F F+LP   L TSF+GK
Sbjct: 66   AVSSDYAAAETYLRRRQLLLRD---TGETTTL---PAGRHEFPFSFQLPP-TLVTSFEGK 118

Query: 629  YGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGR 808
            +G V Y +KA L RP  P +  +K F V++ VD+NTP L+AP +   EK     +   G 
Sbjct: 119  HGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGALEKVARSWYSNRGL 178

Query: 809  VSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSV 988
            VS+SA+IDRKG+  G+ I + A+ +N  +R V+P+AA+V   T++A G  K     ++S+
Sbjct: 179  VSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASL 238

Query: 989  RGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI- 1165
             G  +  G  A W+G++LR+  + PSIL C +L V+Y L + V +PG+ K++L+LPLVI 
Sbjct: 239  AGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKLLLELPLVIG 298

Query: 1166 -XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPTTPLLD 1336
                                   W     P+ PEAPP Y +++ +     +   + P L 
Sbjct: 299  TIPLHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAVGQSSFPPLQ 358

Query: 1337 DTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
            DTD S + P F Y  EF++ PPP YSE DP
Sbjct: 359  DTDLSFEGPFFAYIQEFRYRPPPLYSEEDP 388


>ref|XP_857559.1| PREDICTED: similar to arrestin domain containing 3 isoform 4 [Canis
           familiaris].
          Length = 174

 Score =  103 bits (256), Expect = 7e-22
 Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
 Frame = +2

Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
           K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5   KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                  +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65  AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122

Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPV 757
           L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L+  +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLVRI 173


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,007,069
Number of extensions: 1931766
Number of successful extensions: 4507
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4479
Number of HSP's successfully gapped: 12
Length of query: 622
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 513
Effective length of database: 15,240,880
Effective search space: 7818571440
Effective search space used: 7818571440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000692
         (1867 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006463.3| thioredoxin-interacting protein [Homo sapiens].      726   0.0  
Alignment   gi|NP_899232.2| arrestin domain-containing protein 4 [Homo sapi...   300   3e-81
Alignment   gi|NP_065852.1| arrestin domain-containing protein 3 [Homo sapi...   280   3e-75
Alignment   gi|NP_056498.1| arrestin domain-containing protein 2 isoform 1 ...   240   3e-63
Alignment   gi|NP_001020775.1| arrestin domain-containing protein 2 isoform...   233   5e-61
Alignment   gi|NP_689498.1| arrestin domain-containing protein 1 [Homo sapi...    79   2e-14

>ref|NP_006463.3| thioredoxin-interacting protein [Homo sapiens].
          Length = 391

 Score =  726 bits (1875), Expect = 0.0
 Identities = 356/391 (91%), Positives = 364/391 (93%)
 Frame = +2

Query: 278  MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1    MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
            QQCKQT +YLRYEDTLLL+D PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61   QQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            VDYWVKAFLDRPSQPTQETKK+FEV+DLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121  VDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SARIDRKGFCEGDEI+IHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181  SARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
            HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI    
Sbjct: 241  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300

Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
                              WVDLNIPDTPEAPPCYMD+IPEDHRLESPTTPLLDD DGSQD
Sbjct: 301  GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQD 360

Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
            SPIFMYAPEFKFMPPPTY+EVDPCILNNNVQ
Sbjct: 361  SPIFMYAPEFKFMPPPTYTEVDPCILNNNVQ 391


>ref|NP_899232.2| arrestin domain-containing protein 4 [Homo sapiens].
          Length = 418

 Score =  300 bits (768), Expect = 3e-81
 Identities = 163/394 (41%), Positives = 232/394 (58%), Gaps = 16/394 (4%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCK 469
            ++KS  +VF D  K  Y  GE VAG V++E  E   ++A+R+ A G A   W  G   C 
Sbjct: 16   RVKSLGLVFEDERKGCYSSGETVAGHVLLEASEPVALRALRLEAQGRATAAW--GPSTCP 73

Query: 470  QT------------LDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGT 613
            +             ++YL     L L + P GE  +++++PG K+E+ F F+LP  PL T
Sbjct: 74   RASASTAALAVFSEVEYLNVR--LSLREPPAGEG-IILLQPG-KHEFPFRFQLPSEPLVT 129

Query: 614  SFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMF 793
            SF GKYG + Y V+A L+RP  P Q  K+  +V+  VDVNTP L+ PV   +EK V C F
Sbjct: 130  SFTGKYGSIQYCVRAVLERPKVPDQSVKRELQVVSHVDVNTPALLTPVLKTQEKMVGCWF 189

Query: 794  IPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQ 973
               G VS+SA+I+RKG+C G+ I I+A+ EN  SR++VPKAAI    TYLA+G+TK +  
Sbjct: 190  FTSGPVSLSAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTIRH 249

Query: 974  KLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDL 1153
             +++VRGNHI SG+  +W GK+L++  + PSIL C I+RV+Y L +Y+ +PG+KK++L+L
Sbjct: 250  MVANVRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLEL 309

Query: 1154 PLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTT 1324
            PLVI                        W+ L +P+ PEAPP Y D++ E+      P  
Sbjct: 310  PLVIGTIPYNGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHIPPY 369

Query: 1325 PLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
            P   + +G    P+F    EF+F PPP YSEVDP
Sbjct: 370  PQPPNCEGEVCCPVFACIQEFRFQPPPLYSEVDP 403


>ref|NP_065852.1| arrestin domain-containing protein 3 [Homo sapiens].
          Length = 414

 Score =  280 bits (716), Expect = 3e-75
 Identities = 154/397 (38%), Positives = 228/397 (57%), Gaps = 19/397 (4%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                   +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIH--SGRHEYAFSFELPQTP 122

Query: 605  LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
            L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + 
Sbjct: 123  LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182

Query: 785  CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
            C F   G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K 
Sbjct: 183  CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242

Query: 965  LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
            + Q ++++RG  + SG   +W GK L++  + PSIL C+I+RVEY L++YV +PG+  + 
Sbjct: 243  VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302

Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
            L+LPLVI                        W+ L++P+ PEAPP Y +++ E+ R  + 
Sbjct: 303  LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLSLSLPERPEAPPSYAEVVTEEQRRNNL 362

Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                  DD + +   P+F Y  EF+F+PPP YSE+DP
Sbjct: 363  APVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399


>ref|NP_056498.1| arrestin domain-containing protein 2 isoform 1 [Homo sapiens].
          Length = 407

 Score =  240 bits (613), Expect = 3e-63
 Identities = 145/410 (35%), Positives = 224/410 (54%), Gaps = 17/410 (4%)
 Frame = +2

Query: 281  VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
            ++F K+K+F V  +      E V+  G+ VAGRV++E+    R+ A+R+ A G A V W 
Sbjct: 1    MLFDKVKAFSVQLDGATAGVEPVFSGGQAVAGRVLLELSSAARVGALRLRARGRAHVHWT 60

Query: 449  QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
            +          +Q   + ++ + +  TLL  D  TGE   +   P  ++E+ F F+LP  
Sbjct: 61   ESRSAGSSTAYTQSYSERVEVVSHRATLLAPD--TGETTTL---PPGRHEFLFSFQLPP- 114

Query: 602  PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
             L TSF+GK+G V Y +KA L RP  P +  +K F V++ VD+NTP L+AP +  +EK  
Sbjct: 115  TLVTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGAREKVA 174

Query: 782  SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
               +   G VS+SA+IDRKG+  G+ I + A+ +N  +R V+P+AA+V   T++A G  K
Sbjct: 175  RSWYCNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARK 234

Query: 962  VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
                 ++S+ G  +  G  A W+G++LR+  + PSIL C +L V+Y L + V +PG+ K+
Sbjct: 235  QKRAVVASLAGEPVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKL 294

Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDII--PEDHRL 1309
            +L+LPLVI                        W    +P+ PEAPP Y +++   E+  L
Sbjct: 295  LLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAAL 354

Query: 1310 ESPTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ*TC 1459
                 PL  D D S + P F Y  EF++ PPP YSE DP  L  +++  C
Sbjct: 355  GQSPFPLPQDPDMSLEGPFFAYIQEFRYRPPPLYSEEDPNPLLGDMRPRC 404


>ref|NP_001020775.1| arrestin domain-containing protein 2 isoform 2 [Homo sapiens].
          Length = 402

 Score =  233 bits (594), Expect = 5e-61
 Identities = 142/401 (35%), Positives = 215/401 (53%), Gaps = 13/401 (3%)
 Frame = +2

Query: 296  IKSFEV-VFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG------ 454
            ++SF + +   P   Y  GE++ GRV++E     R++A+ + A G A   W++G      
Sbjct: 6    VRSFALELARGPGGAYRGGERLCGRVLLEAAAPLRVRALEVKARGGAATHWLEGRSVGVN 65

Query: 455  --SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGK 628
              S        YLR    LL D   TGE   +   P  ++E+ F F+LP   L TSF+GK
Sbjct: 66   AVSSDYAAAETYLRRRQLLLRD---TGETTTL---PPGRHEFLFSFQLPP-TLVTSFEGK 118

Query: 629  YGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGR 808
            +G V Y +KA L RP  P +  +K F V++ VD+NTP L+AP +  +EK     +   G 
Sbjct: 119  HGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGAREKVARSWYCNRGL 178

Query: 809  VSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSV 988
            VS+SA+IDRKG+  G+ I + A+ +N  +R V+P+AA+V   T++A G  K     ++S+
Sbjct: 179  VSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASL 238

Query: 989  RGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI- 1165
             G  +  G  A W+G++LR+  + PSIL C +L V+Y L + V +PG+ K++L+LPLVI 
Sbjct: 239  AGEPVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKLLLELPLVIG 298

Query: 1166 -XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDII--PEDHRLESPTTPLLD 1336
                                   W    +P+ PEAPP Y +++   E+  L     PL  
Sbjct: 299  TIPLHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAALGQSPFPLPQ 358

Query: 1337 DTDGSQDSPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ*TC 1459
            D D S + P F Y  EF++ PPP YSE DP  L  +++  C
Sbjct: 359  DPDMSLEGPFFAYIQEFRYRPPPLYSEEDPNPLLGDMRPRC 399


>ref|NP_689498.1| arrestin domain-containing protein 1 [Homo sapiens].
          Length = 433

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 3/294 (1%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
            +++ FE+  +    VY  GE +AG V V +      +A+R+   G   V     +     
Sbjct: 3    RVQLFEISLSHGRVVYSPGEPLAGTVRVRLGAPLPFRAIRVTCIGSCGV--SNKANDTAW 60

Query: 473  TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
             ++   +  +L L D  +         P  ++ + F F LP     TSF+G +G + + V
Sbjct: 61   VVEEGYFNSSLSLADKGS--------LPAGEHSFPFQFLLP-ATAPTSFEGPFGKIVHQV 111

Query: 653  KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
            +A +  P      +    F ++  +++N+ PD+  P  A   KK S   +  G V ++A 
Sbjct: 112  RAAIHTPRFSKDHKCSLVFYILSPLNLNSIPDIEQPNVASATKKFSYKLVKTGSVVLTAS 171

Query: 827  IDRKGFCEGDEINIHADFENTCSRIVVP-KAAIVARHTYLANGQTKVLTQKLSSVRGNHI 1003
             D +G+  G  + +HAD EN   +   P  A+++ + +Y A      + + ++ V G  +
Sbjct: 172  TDLRGYVVGQALQLHADVENQSGKDTSPVVASLLQKVSYKAKRWIHDV-RTIAEVEGAGV 230

Query: 1004 ISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
             +   A W  + L     + ++ GC+++ ++Y+L + +  P   +  + LP+ I
Sbjct: 231  KAWRRAQWHEQILVPALPQSALPGCSLIHIDYYLQVSLKAP---EATVTLPVFI 281


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,746,914
Number of extensions: 1912258
Number of successful extensions: 4806
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4794
Number of HSP's successfully gapped: 6
Length of query: 622
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 513
Effective length of database: 14,704,088
Effective search space: 7543197144
Effective search space used: 7543197144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000692
         (1867 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_076208.2| thioredoxin-interacting protein isoform 2 [Mus ...   717   0.0  
Alignment   gi|NP_001009935.1| thioredoxin-interacting protein isoform 1 [M...   712   0.0  
Alignment   gi|NP_001036057.1| arrestin domain containing 4 isoform 1 [Mus ...   290   2e-78
Alignment   gi|NP_001036056.1| arrestin domain-containing protein 3 [Mus mu...   278   1e-74
Alignment   gi|NP_081836.1| arrestin domain-containing protein 2 [Mus muscu...   224   2e-58
Alignment   gi|NP_079825.2| arrestin domain containing 4 isoform 2 [Mus mus...   223   4e-58
Alignment   gi|NP_848495.2| arrestin domain-containing protein 1 isoform b ...    83   6e-16
Alignment   gi|NP_001155957.1| arrestin domain-containing protein 1 isoform...    82   2e-15

>ref|NP_076208.2| thioredoxin-interacting protein isoform 2 [Mus musculus].
          Length = 396

 Score =  717 bits (1850), Expect = 0.0
 Identities = 349/389 (89%), Positives = 360/389 (92%)
 Frame = +2

Query: 278  MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1    MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
            QQCKQTLDYLRYEDTLLL++ PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61   QQCKQTLDYLRYEDTLLLEEQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            VDYWVKAFLDRPSQPTQE KK+FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121  VDYWVKAFLDRPSQPTQEAKKNFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SARIDRKGFCEGD+I+IHADFENTCSRIVVPKAAIVARHTYLANGQTKV TQKLSSVRGN
Sbjct: 181  SARIDRKGFCEGDDISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVFTQKLSSVRGN 240

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
            HIISGTCASWRGKSLRVQKIRPSILGCNIL+VEY LLIYVSVPGSKKVILDLPLVI    
Sbjct: 241  HIISGTCASWRGKSLRVQKIRPSILGCNILKVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300

Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
                              W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDD D SQD
Sbjct: 301  GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDVDDSQD 360

Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNN 1444
            SPIFMYAPEF+FMPPPTY+EVDPC+LNNN
Sbjct: 361  SPIFMYAPEFQFMPPPTYTEVDPCVLNNN 389


>ref|NP_001009935.1| thioredoxin-interacting protein isoform 1 [Mus musculus].
          Length = 397

 Score =  712 bits (1838), Expect = 0.0
 Identities = 349/390 (89%), Positives = 360/390 (92%), Gaps = 1/390 (0%)
 Frame = +2

Query: 278  MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1    MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60

Query: 458  QQCKQTLDYLRYEDTLLLDDHPT-GENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG 634
            QQCKQTLDYLRYEDTLLL++ PT GENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG
Sbjct: 61   QQCKQTLDYLRYEDTLLLEEQPTAGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG 120

Query: 635  CVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVS 814
            CVDYWVKAFLDRPSQPTQE KK+FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVS
Sbjct: 121  CVDYWVKAFLDRPSQPTQEAKKNFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVS 180

Query: 815  VSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRG 994
            VSARIDRKGFCEGD+I+IHADFENTCSRIVVPKAAIVARHTYLANGQTKV TQKLSSVRG
Sbjct: 181  VSARIDRKGFCEGDDISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVFTQKLSSVRG 240

Query: 995  NHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXX 1174
            NHIISGTCASWRGKSLRVQKIRPSILGCNIL+VEY LLIYVSVPGSKKVILDLPLVI   
Sbjct: 241  NHIISGTCASWRGKSLRVQKIRPSILGCNILKVEYSLLIYVSVPGSKKVILDLPLVIGSR 300

Query: 1175 XXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQ 1354
                               W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDD D SQ
Sbjct: 301  SGLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDVDDSQ 360

Query: 1355 DSPIFMYAPEFKFMPPPTYSEVDPCILNNN 1444
            DSPIFMYAPEF+FMPPPTY+EVDPC+LNNN
Sbjct: 361  DSPIFMYAPEFQFMPPPTYTEVDPCVLNNN 390


>ref|NP_001036057.1| arrestin domain containing 4 isoform 1 [Mus musculus].
          Length = 415

 Score =  290 bits (743), Expect = 2e-78
 Identities = 159/392 (40%), Positives = 226/392 (57%), Gaps = 14/392 (3%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQ------ 451
            ++KS  +VF D  K  Y  GE VAG V++E  E   ++ +R+ A G A   W        
Sbjct: 13   RVKSLGLVFEDESKGCYSSGETVAGHVLLEAAEPVALRGLRLEAQGRATSAWGPSAGARV 72

Query: 452  ----GSQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSF 619
                GS      ++YL    +LL  + P GE  + +++PG K+E+ F F+LP  PL TSF
Sbjct: 73   CIGGGSPAASSEVEYLNLRLSLL--EAPAGEG-VTLLQPG-KHEFPFRFQLPSEPLATSF 128

Query: 620  KGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIP 799
             GKYG + Y V+A L+RP  P Q  ++  +V+  VDVNTP L+ P+   +EK V C    
Sbjct: 129  TGKYGSIQYCVRAVLERPQVPDQSVRRELQVVSHVDVNTPPLLTPMLKTQEKMVGCWLFT 188

Query: 800  DGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKL 979
             G VS+S +I+RKG+C G+ I I+A+ EN  SR+VVPKAAI    TYLA+G+TK +   +
Sbjct: 189  SGPVSLSVKIERKGYCNGEAIPIYAEIENCSSRLVVPKAAIFQTQTYLASGKTKTVRHMV 248

Query: 980  SSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPL 1159
            ++VRGNHI SG+  +W GK L++  + PSIL C I+RV+Y L +Y+ +PG+K+++L+LPL
Sbjct: 249  ANVRGNHIGSGSTDTWNGKMLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKRLMLELPL 308

Query: 1160 VI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTTPL 1330
            VI                        W+ L +P+ PEAPP Y D++ E+      P  P 
Sbjct: 309  VIGTIPYSGFGRRNSSVASQFSMDMCWLALALPEQPEAPPNYADVVSEEEFSRHVPPYPQ 368

Query: 1331 LDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
              D DG     +F    EF+F PPP YSEVDP
Sbjct: 369  PSDCDGEACYSMFACIQEFRFQPPPLYSEVDP 400


>ref|NP_001036056.1| arrestin domain-containing protein 3 [Mus musculus].
          Length = 414

 Score =  278 bits (711), Expect = 1e-74
 Identities = 154/397 (38%), Positives = 227/397 (57%), Gaps = 19/397 (4%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                   +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIH--SGRHEYAFSFELPQTP 122

Query: 605  LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
            L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + 
Sbjct: 123  LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182

Query: 785  CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
            C F   G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K 
Sbjct: 183  CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242

Query: 965  LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
            + Q ++++RG  + SG   +W GK L++  + PSIL C+I+RVEY L++YV +PG+  ++
Sbjct: 243  VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLL 302

Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
            L LPLVI                        W+ L +P+ PEAPP Y +++ E+ R  + 
Sbjct: 303  LSLPLVIGTIPLHPFGSRTSSVSSQCSMSMNWLALALPERPEAPPSYAEVVTEEQRRNNL 362

Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
                  DD + +   P+F Y  EF+F+PPP YSE+DP
Sbjct: 363  APVGACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399


>ref|NP_081836.1| arrestin domain-containing protein 2 [Mus musculus].
          Length = 407

 Score =  224 bits (571), Expect = 2e-58
 Identities = 138/399 (34%), Positives = 214/399 (53%), Gaps = 17/399 (4%)
 Frame = +2

Query: 281  VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
            ++F K+K+F V  +      E V+  G+ VAGRV++E+    R+ A+R+ A G A+  W 
Sbjct: 1    MLFDKVKAFVVEIDGARTGTEPVFHGGQAVAGRVLLELAGAARVGALRLRARGRARAHWT 60

Query: 449  QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
            +          +Q   + ++ + +  TLL  D  +G+   +   P  ++E+ F F+LP  
Sbjct: 61   ESRSAGSSTAYTQSYSERVEVVNHRATLLAPD--SGD---IATLPAGRHEFPFSFQLPIS 115

Query: 602  PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
             L TSF+GK+G V Y +KA L RP  P +  +K F V++ VD+NTP L+ P +  +EK  
Sbjct: 116  -LVTSFEGKHGSVRYSIKATLHRPWVPARCARKVFTVIEPVDINTPALLEPQAGAREKVA 174

Query: 782  SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
               +   G VS+SA+IDRKG+  G+ I I A+ +N  +R V P+AA+V   T++A G  K
Sbjct: 175  RSWYCTRGLVSLSAKIDRKGYTPGEVIPIFAEIDNGSTRAVQPRAALVQTQTFMARGARK 234

Query: 962  VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
                 ++SV G  +     A W G++LR+  + PSIL C +L V+Y L ++V +PGS K+
Sbjct: 235  QKRAVVASVDGEPVGPNRRALWPGRALRIPPVGPSILQCRVLSVDYSLKVFVDIPGSSKL 294

Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES 1315
            +L+LPLVI                        W    + D PEAPP Y +++ E   + +
Sbjct: 295  LLELPLVIGTVPLHPLGSRSASVGSRASFLQDWGLCTMMDRPEAPPEYSEVVRESQLVCA 354

Query: 1316 PTTP--LLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
               P  LL D   + + P F    EF++ PPP YSE DP
Sbjct: 355  SPGPSSLLHDLGVTTEGPYFACLQEFRYCPPPLYSEEDP 393


>ref|NP_079825.2| arrestin domain containing 4 isoform 2 [Mus musculus].
          Length = 296

 Score =  223 bits (568), Expect = 4e-58
 Identities = 120/284 (42%), Positives = 172/284 (60%), Gaps = 11/284 (3%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQ------ 451
            ++KS  +VF D  K  Y  GE VAG V++E  E   ++ +R+ A G A   W        
Sbjct: 13   RVKSLGLVFEDESKGCYSSGETVAGHVLLEAAEPVALRGLRLEAQGRATSAWGPSAGARV 72

Query: 452  ----GSQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSF 619
                GS      ++YL    +LL  + P GE  + +++PG K+E+ F F+LP  PL TSF
Sbjct: 73   CIGGGSPAASSEVEYLNLRLSLL--EAPAGEG-VTLLQPG-KHEFPFRFQLPSEPLATSF 128

Query: 620  KGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIP 799
             GKYG + Y V+A L+RP  P Q  ++  +V+  VDVNTP L+ P+   +EK V C    
Sbjct: 129  TGKYGSIQYCVRAVLERPQVPDQSVRRELQVVSHVDVNTPPLLTPMLKTQEKMVGCWLFT 188

Query: 800  DGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKL 979
             G VS+S +I+RKG+C G+ I I+A+ EN  SR+VVPKAAI    TYLA+G+TK +   +
Sbjct: 189  SGPVSLSVKIERKGYCNGEAIPIYAEIENCSSRLVVPKAAIFQTQTYLASGKTKTVRHMV 248

Query: 980  SSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLI 1111
            ++VRGNHI SG+  +W GK L++  + PSIL C I+RV+Y L +
Sbjct: 249  ANVRGNHIGSGSTDTWNGKMLKIPPVTPSILDCCIIRVDYSLAV 292


>ref|NP_848495.2| arrestin domain-containing protein 1 isoform b [Mus musculus].
          Length = 433

 Score = 83.2 bits (204), Expect = 6e-16
 Identities = 67/293 (22%), Positives = 134/293 (45%), Gaps = 2/293 (0%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
            +++ FE+  +    VYG GE +AG V + +      +A+R+   G   V     +     
Sbjct: 3    RVQLFEIRLSQGRVVYGPGEPLAGTVHLRLGAPLPFRAIRVTCMGSCGV--STKANDGAW 60

Query: 473  TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
             ++   +  +L L D  +         P  ++ + F F LP     TSF+G +G + + V
Sbjct: 61   VVEESYFNSSLSLADKGS--------LPAGEHNFPFQFLLP-ATAPTSFEGPFGKIVHQV 111

Query: 653  KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
            +A +D P      +    F ++  +++N+ PD+  P  A   KK S   +  G V ++A 
Sbjct: 112  RASIDTPRFSKDHKCSLVFYILSPLNLNSIPDIEQPNVASTTKKFSYKLVKTGNVVLTAS 171

Query: 827  IDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHII 1006
             D +G+  G  + + AD EN   +   P  A + + +Y A  +     + ++ V G  + 
Sbjct: 172  TDLRGYVVGQVLRLQADIENQSGKDTSPVVASLLQVSYKAK-RWIYDVRTIAEVEGTGVK 230

Query: 1007 SGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
            +   A W+ + L     + ++ GC+++ ++Y+L + +  P   +  + LPL +
Sbjct: 231  AWRRAQWQEQILVPALPQSALPGCSLIHIDYYLQVSMKAP---EATVTLPLFV 280


>ref|NP_001155957.1| arrestin domain-containing protein 1 isoform a [Mus musculus].
          Length = 434

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 65/293 (22%), Positives = 131/293 (44%), Gaps = 2/293 (0%)
 Frame = +2

Query: 293  KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
            +++ FE+  +    VYG GE +AG V + +      +A+R+   G   V     +     
Sbjct: 3    RVQLFEIRLSQGRVVYGPGEPLAGTVHLRLGAPLPFRAIRVTCMGSCGV--STKANDGAW 60

Query: 473  TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
             ++   +  +L L D  +         P  ++ + F F LP     TSF+G +G + + V
Sbjct: 61   VVEESYFNSSLSLADKGS--------LPAGEHNFPFQFLLP-ATAPTSFEGPFGKIVHQV 111

Query: 653  KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
            +A +D P      +    F ++  +++N+ PD+  P  A   KK S   +  G V ++A 
Sbjct: 112  RASIDTPRFSKDHKCSLVFYILSPLNLNSIPDIEQPNVASTTKKFSYKLVKTGNVVLTAS 171

Query: 827  IDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHII 1006
             D +G+  G  + + AD EN   +   P  A + +       +     + ++ V G  + 
Sbjct: 172  TDLRGYVVGQVLRLQADIENQSGKDTSPVVASLLQKVSYKAKRWIYDVRTIAEVEGTGVK 231

Query: 1007 SGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
            +   A W+ + L     + ++ GC+++ ++Y+L + +  P   +  + LPL +
Sbjct: 232  AWRRAQWQEQILVPALPQSALPGCSLIHIDYYLQVSMKAP---EATVTLPLFV 281


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,723,099
Number of extensions: 1620530
Number of successful extensions: 4001
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3983
Number of HSP's successfully gapped: 8
Length of query: 622
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 515
Effective length of database: 12,403,707
Effective search space: 6387909105
Effective search space used: 6387909105
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000692
         (1867 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001038079.1| thioredoxin-interacting protein [Sus scrofa].     752   0.0  
Alignment   gi|XP_001924225.3| PREDICTED: arrestin domain-containing protei...   301   6e-82
Alignment   gi|XP_003361822.1| PREDICTED: arrestin domain-containing protei...   278   6e-75
Alignment   gi|XP_003123831.2| PREDICTED: arrestin domain-containing protei...   273   2e-73
Alignment   gi|XP_003123551.1| PREDICTED: arrestin domain-containing protei...   238   1e-62
Alignment   gi|XP_003123552.1| PREDICTED: arrestin domain-containing protei...   235   7e-62

>ref|NP_001038079.1| thioredoxin-interacting protein [Sus scrofa].
          Length = 391

 Score =  752 bits (1942), Expect = 0.0
 Identities = 369/391 (94%), Positives = 369/391 (94%)
 Frame = +2

Query: 278  MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS
Sbjct: 1    MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 60

Query: 458  QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
            QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61   QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120

Query: 638  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
            VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121  VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180

Query: 818  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
            SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181  SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240

Query: 998  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
            HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI    
Sbjct: 241  HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIGSRS 300

Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
                              WVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 301  GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 360

Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
            SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ
Sbjct: 361  SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 391


>ref|XP_001924225.3| PREDICTED: arrestin domain-containing protein 4 isoform 1 [Sus
            scrofa].
          Length = 401

 Score =  301 bits (772), Expect = 6e-82
 Identities = 160/390 (41%), Positives = 233/390 (59%), Gaps = 8/390 (2%)
 Frame = +2

Query: 281  VMFKKIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
            ++  ++KS  +VF D  K  Y  GE+VAG V++E  E   ++A+R+ A G A   W   +
Sbjct: 1    MLLGRVKSLGLVFEDERKGCYSSGERVAGHVLLEAAEPVTLRALRLEAHGRATAAWGPSA 60

Query: 458  ----QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKG 625
                      ++YL     L L + P GE  +++++PG K+E+ F F+LP  PL TSF G
Sbjct: 61   GAAAPAAASEVEYLNVR--LSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTG 116

Query: 626  KYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDG 805
            KYG + Y V+A L+RP  P Q  K+  +V+  +DVNTP L+ PV   +EK V C F   G
Sbjct: 117  KYGSIQYCVRAILERPRVPDQSVKRELQVISHIDVNTPALLTPVLKTQEKMVGCWFFTSG 176

Query: 806  RVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSS 985
             VS+SA+I+RKG+C G+ I I+A+ EN  SR++VPKAAI    TYLA+G+TK +   +++
Sbjct: 177  PVSLSAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRHMVAN 236

Query: 986  VRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
            VRGNHI SG+  +W GK+L++  + PSIL C I+RV+Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 237  VRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVI 296

Query: 1166 --XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTTPLLD 1336
                                    W+ L +P+ PEAPP Y D++ E+      P  P   
Sbjct: 297  GTVPYNGFGSRNSSIASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHVPPYPQPP 356

Query: 1337 DTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
            + +G    P+F    EF+F PPP YSEVDP
Sbjct: 357  NCEGDSCCPMFACIQEFRFQPPPLYSEVDP 386


>ref|XP_003361822.1| PREDICTED: arrestin domain-containing protein 3-like [Sus scrofa].
          Length = 408

 Score =  278 bits (712), Expect = 6e-75
 Identities = 152/394 (38%), Positives = 227/394 (57%), Gaps = 16/394 (4%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGT 613
                   +Q   + ++Y  ++D +L+     G N +       ++EY F FELPQ PL T
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKD-ILIGHEREGFNTI----HSGRHEYAFSFELPQTPLAT 119

Query: 614  SFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMF 793
            SF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + C F
Sbjct: 120  SFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLCCWF 179

Query: 794  IPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQ 973
               G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K + Q
Sbjct: 180  CTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQ 239

Query: 974  KLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDL 1153
             ++++RG  + SG   +W GK L++  + PSIL C+I+RVEY L++YV +PG+  + L+L
Sbjct: 240  LVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNL 299

Query: 1154 PLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTT 1324
            PLVI                        W+ L++P+ PEAPP Y +++ E+ R  +    
Sbjct: 300  PLVIGTIPLHPFGSRTSSVSSQCSMNINWLGLSLPERPEAPPSYAEVVTEEQRRNNLAPV 359

Query: 1325 PLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
               DD + +   P+F Y  EF+F+PPP YSE+DP
Sbjct: 360  SACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 393


>ref|XP_003123831.2| PREDICTED: arrestin domain-containing protein 3, partial [Sus
            scrofa].
          Length = 396

 Score =  273 bits (699), Expect = 2e-73
 Identities = 152/394 (38%), Positives = 225/394 (57%), Gaps = 19/394 (4%)
 Frame = +2

Query: 293  KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
            K+KS  + F   ND    VY  G+ V+GRV +EV    R+K+++I A G AKV W +   
Sbjct: 5    KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64

Query: 455  -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
                   +Q   + ++Y  ++D L+    DD  + E    I     ++EY F FELPQ P
Sbjct: 65   AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122

Query: 605  LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
            L TSF+G++G V YWVKA L RP     + KK F V + +D+NTP L++P +  KEK + 
Sbjct: 123  LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182

Query: 785  CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
            C F   G +S+SA+I+RKG+  G+ I I A+ EN  SR+VVPKAAI     + A G+ K 
Sbjct: 183  CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242

Query: 965  LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
            + Q ++++RG  + SG   +W GK L++  + PSIL C+I+RVEY L++YV +PG+  + 
Sbjct: 243  VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302

Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
            L+LPLVI                        W+ L++P+ PEAPP Y +++ E+ R  + 
Sbjct: 303  LNLPLVIGTIPLHPFGSRTSSVSSQCSMNINWLGLSLPERPEAPPSYAEVVTEEQRRNNL 362

Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSE 1417
                  DD + +   P+F Y  EF+F+PPP YSE
Sbjct: 363  APVSACDDFERALQGPLFAYIQEFRFLPPPLYSE 396


>ref|XP_003123551.1| PREDICTED: arrestin domain-containing protein 2 isoform 1 [Sus
            scrofa].
          Length = 411

 Score =  238 bits (606), Expect = 1e-62
 Identities = 141/403 (34%), Positives = 221/403 (54%), Gaps = 21/403 (5%)
 Frame = +2

Query: 281  VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
            ++F K+K+F V  +      E V+  G+ V GRV++E+    R+  +++ A G A V W 
Sbjct: 1    MLFDKVKAFMVQLDGASAGAEPVFSGGQAVVGRVLLELTGPARVGTLKLRARGRAHVHWT 60

Query: 449  QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
            +          +Q   + ++++ +  TLL  D  TGE   +   P  ++E+ F F+LP  
Sbjct: 61   ESRSAGSSTAYTQSYSERVEFVNHRATLLAPD--TGE---ITTLPPGRHEFPFSFQLPP- 114

Query: 602  PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
             L TSF+GK+G V Y +KA L RP  P + T+K F V++ VD+NTP L+AP +  +EK  
Sbjct: 115  TLVTSFEGKHGSVRYCIKATLHRPWVPARRTRKVFTVIEPVDINTPALLAPQAGAREKIA 174

Query: 782  SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
               +   G VS+SA+IDRKG+  G+ I + A+ +N  +R V+P+AA+V   T++A G  K
Sbjct: 175  RSWYSNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGTTRPVLPRAAVVQTQTFMARGARK 234

Query: 962  VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
                 ++S+ G  +  G  A W+G++LR+  + PSIL C +L V+Y L + V +PGS K+
Sbjct: 235  QKRAVVASLSGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKL 294

Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH---- 1303
            +L+LPLVI                        W    +P+ PEAPP Y +++ +D     
Sbjct: 295  LLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWGLGVLPERPEAPPEYSEVVADDEMAAA 354

Query: 1304 --RLESPTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
               +E    PLL + + S + P F Y  EF++ PPP YSE DP
Sbjct: 355  AAAVEQSPFPLLQNPNMSPEGPFFAYIQEFRYRPPPLYSEEDP 397


>ref|XP_003123552.1| PREDICTED: arrestin domain-containing protein 2 isoform 2 [Sus
            scrofa].
          Length = 406

 Score =  235 bits (599), Expect = 7e-62
 Identities = 139/383 (36%), Positives = 207/383 (54%), Gaps = 16/383 (4%)
 Frame = +2

Query: 326  PEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG--------SQQCKQTLD 481
            P   Y  GE++ GRV++E     R++A+ + A G A   W++G        S        
Sbjct: 17   PGGAYRGGERLCGRVLLEAAAPLRVRALEVAARGWAATHWLEGRSVGINAVSSDYAAAET 76

Query: 482  YLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWVKAF 661
            YLR    LL D   TGE   +   P  ++E+ F F+LP   L TSF+GK+G V Y +KA 
Sbjct: 77   YLRRRQLLLRD---TGE---ITTLPPGRHEFPFSFQLPP-TLVTSFEGKHGSVRYCIKAT 129

Query: 662  LDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSVSARIDRKG 841
            L RP  P + T+K F V++ VD+NTP L+AP +  +EK     +   G VS+SA+IDRKG
Sbjct: 130  LHRPWVPARRTRKVFTVIEPVDINTPALLAPQAGAREKIARSWYSNRGLVSLSAKIDRKG 189

Query: 842  FCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHIISGTCA 1021
            +  G+ I + A+ +N  +R V+P+AA+V   T++A G  K     ++S+ G  +  G  A
Sbjct: 190  YTPGEVIPVFAEIDNGTTRPVLPRAAVVQTQTFMARGARKQKRAVVASLSGEPVGPGRRA 249

Query: 1022 SWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XXXXXXXXXX 1195
             W+G++LR+  + PSIL C +L V+Y L + V +PGS K++L+LPLVI            
Sbjct: 250  LWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLELPLVIGTIPLHPFGSRS 309

Query: 1196 XXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH------RLESPTTPLLDDTDGSQD 1357
                        W    +P+ PEAPP Y +++ +D        +E    PLL + + S +
Sbjct: 310  SSVGSHASFLLDWGLGVLPERPEAPPEYSEVVADDEMAAAAAAVEQSPFPLLQNPNMSPE 369

Query: 1358 SPIFMYAPEFKFMPPPTYSEVDP 1426
             P F Y  EF++ PPP YSE DP
Sbjct: 370  GPFFAYIQEFRYRPPPLYSEEDP 392


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,230,870
Number of extensions: 1199603
Number of successful extensions: 3008
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2992
Number of HSP's successfully gapped: 6
Length of query: 622
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 517
Effective length of database: 8,729,747
Effective search space: 4513279199
Effective search space used: 4513279199
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000692
         (1867 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                        1027   0.0  

>Sscrofa_Chr04 
||          Length = 143465943

 Score = 1027 bits (518), Expect = 0.0
 Identities = 525/526 (99%), Gaps = 1/526 (0%)
 Strand = Plus / Plus

                                                                             
Query: 4         agctatcctttc-actcctctggcagatcgctgttagctttcccgccgagatccggagct 62
                 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991377 agctatcctttccactcctctggcagatcgctgttagctttcccgccgagatccggagct 108991436

                                                                             
Query: 63        ctcctccagctgttggaggaaagacaggaaagagcttatttttcttttgaaataccttgg 122
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991437 ctcctccagctgttggaggaaagacaggaaagagcttatttttcttttgaaataccttgg 108991496

                                                                             
Query: 123       cacaaccagcaagggaacatcttgtcgaacatttaatagagagttgaaaagtgaaataat 182
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991497 cacaaccagcaagggaacatcttgtcgaacatttaatagagagttgaaaagtgaaataat 108991556

                                                                             
Query: 183       tttaattcattgcaaagggccctttgattcggggttttgtttttcactcctgccccctgc 242
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991557 tttaattcattgcaaagggccctttgattcggggttttgtttttcactcctgccccctgc 108991616

                                                                             
Query: 243       cccgtttctaactctcaagtcaaccgagcccaaacatggtgatgttcaagaagatcaagt 302
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991617 cccgtttctaactctcaagtcaaccgagcccaaacatggtgatgttcaagaagatcaagt 108991676

                                                                             
Query: 303       cttttgaggtggtctttaacgaccccgaaaaggtgtacggctgtggggagaaggtggctg 362
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991677 cttttgaggtggtctttaacgaccccgaaaaggtgtacggctgtggggagaaggtggctg 108991736

                                                                             
Query: 363       gccgggtgatagtggaggtgtgtgaagtcactcgaatcaaagctgtcaggatcctggctt 422
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991737 gccgggtgatagtggaggtgtgtgaagtcactcgaatcaaagctgtcaggatcctggctt 108991796

                                                                             
Query: 423       gtggagtggccaaagtcctgtggatgcagggatcccagcagtgcaaacagaccttggact 482
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991797 gtggagtggccaaagtcctgtggatgcagggatcccagcagtgcaaacagaccttggact 108991856

                                                               
Query: 483       acctgcgctatgaagacactcttctcctggacgaccacccaacagg 528
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991857 acctgcgctatgaagacactcttctcctggacgaccacccaacagg 108991902



 Score =  769 bits (388), Expect = 0.0
 Identities = 436/453 (96%), Gaps = 1/453 (0%)
 Strand = Plus / Plus

                                                                             
Query: 1416      aggtggatccctgcatcctcaacaacaacgtgcagtgaacatgtggaaggaaagaagcag 1475
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994108 aggtggatccctgcatcctcaacaacaacgtgcagtgaacatgtggaaggaaagaagcag 108994167

                                                                             
Query: 1476      ctatacctacttctttcttttcacctctcttcctggactgactttttaggagactcaaca 1535
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994168 ctatacctacttctttcttttcacctctcttcctggactgactttttaggagactcaaca 108994227

                                                                             
Query: 1536      gtctctgcagtggggtacagatccaccccagcctctgactctccggtgtaggaggtgatc 1595
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994228 gtctctgcagtggggtacagatccaccccagcctctgactctccggtgtaggaggtgatc 108994287

                                                                             
Query: 1596      atcaggcaatctcttgggccttaaagggtgcgcagtcgtcctcagccagtgagatgttgt 1655
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994288 atcaggcaatctcttgggccttaaagggtgcgcagtcgtcctcagccagtgagatgttgt 108994347

                                                                             
Query: 1656      gacaagggnnnnnnngctggatgggtttaaaaacccagacaaattttagcccattccatt 1715
                 ||||||||       ||||||||||||||||||| |||||||||||  ||||||||||||
Sbjct: 108994348 gacaagggtttttttgctggatgggtttaaaaacacagacaaatttaggcccattccatt 108994407

                                                                             
Query: 1716      ttctcagatcttttttgagaattgaggcattttaaataaggggtagaaatggcctcctgg 1775
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994408 ttctcagatcttttttgagaattgaggcattttaaataaggggtagaaatggcctcctgg 108994467

                                                                             
Query: 1776      tgtggtc-tcccaaggttttatggaggggatttcagactgttataacaataaatcttgaa 1834
                 ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 108994468 tgtggtcttcccaaggttttatggaggggatttcagactgttataacaatagatcttgaa 108994527

                                                  
Query: 1835      cccctgccctgtggaaaaaacccaattttgcaa 1867
                 || ||||| |||||| |||| ||||||| ||||
Sbjct: 108994528 cctctgccatgtggagaaaagccaatttagcaa 108994560



 Score =  513 bits (259), Expect = e-142
 Identities = 259/259 (100%)
 Strand = Plus / Plus

                                                                             
Query: 850       aggtgatgagattaacatccatgctgattttgagaatacatgttcccgcattgtggtgcc 909
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993197 aggtgatgagattaacatccatgctgattttgagaatacatgttcccgcattgtggtgcc 108993256

                                                                             
Query: 910       caaagctgccattgtagcccgccacacttaccttgccaatggccaaaccaaagtactgac 969
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993257 caaagctgccattgtagcccgccacacttaccttgccaatggccaaaccaaagtactgac 108993316

                                                                             
Query: 970       gcagaagttgtcatcggtcagaggcaatcacattatctcaggaacctgtgcatcatggcg 1029
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993317 gcagaagttgtcatcggtcagaggcaatcacattatctcaggaacctgtgcatcatggcg 108993376

                                                                             
Query: 1030      tggcaagagccttcgggtgcagaagatcaggccttctatcttgggctgcaacatccttcg 1089
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993377 tggcaagagccttcgggtgcagaagatcaggccttctatcttgggctgcaacatccttcg 108993436

                                    
Query: 1090      agttgaatacttcttactg 1108
                 |||||||||||||||||||
Sbjct: 108993437 agttgaatacttcttactg 108993455



 Score =  309 bits (156), Expect = 3e-81
 Identities = 156/156 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1264      agctcctccatgctatatggatatcattcctgaagatcaccgattggagagccccaccac 1323
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993824 agctcctccatgctatatggatatcattcctgaagatcaccgattggagagccccaccac 108993883

                                                                             
Query: 1324      tcctctgctagatgacacagatggctctcaagacagccctatctttatgtatgctcctga 1383
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993884 tcctctgctagatgacacagatggctctcaagacagccctatctttatgtatgctcctga 108993943

                                                     
Query: 1384      gtttaagttcatgccaccacctacttacagtgaggt 1419
                 ||||||||||||||||||||||||||||||||||||
Sbjct: 108993944 gtttaagttcatgccaccacctacttacagtgaggt 108993979



 Score =  305 bits (154), Expect = 5e-80
 Identities = 157/158 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1108      gatctacgttagtgtccctggctccaagaaggtcattcttgacctgccgctggtaattgg 1167
                 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 108993556 gatctacgttagtgtccctggctccaagaaggtcattcttgacctgcccctggtaattgg 108993615

                                                                             
Query: 1168      cagcaggtcaggcctcagcagccggacgtccagcatggccagccgaaccagctccgagat 1227
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993616 cagcaggtcaggcctcagcagccggacgtccagcatggccagccgaaccagctccgagat 108993675

                                                       
Query: 1228      gagttgggtagatctaaacatccctgatacccccgaag 1265
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 108993676 gagttgggtagatctaaacatccctgatacccccgaag 108993713



 Score =  256 bits (129), Expect = 4e-65
 Identities = 143/150 (95%)
 Strand = Plus / Plus

                                                                             
Query: 600       ggcctctgggaacatctttcaaaggaaaatatgggtgtgtagactactgggtgaaggctt 659
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108992609 ggcctctgggaacatctttcaaaggaaaatatgggtgtgtagactactgggtgaaggctt 108992668

                                                                             
Query: 660       ttcttgatcgcccaagccagccaactcaagagacnnnnnnncacttcgaagtgatggatc 719
                 ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 108992669 ttcttgatcgcccaagccagccaactcaagagacaaaaaaacacttcgaagtgatggatc 108992728

                                               
Query: 720       tagtggatgtcaatacccctgatttaatgg 749
                 ||||||||||||||||||||||||||||||
Sbjct: 108992729 tagtggatgtcaatacccctgatttaatgg 108992758



 Score =  210 bits (106), Expect = 2e-51
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                             
Query: 748       ggcacctgtgtctgctaaaaaggagaagaaagtttcctgcatgttcattcctgatggccg 807
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108992964 ggcacctgtgtctgctaaaaaggagaagaaagtttcctgcatgttcattcctgatggccg 108993023

                                                               
Query: 808       ggtgtctgtctctgctcgaatcgacagaaaagggttctgtgaaggt 853
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993024 ggtgtctgtctctgctcgaatcgacagaaaagggttctgtgaaggt 108993069



 Score =  153 bits (77), Expect = 4e-34
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                             
Query: 525       caggggagaatgagatggtgatcatgagacctggaaacaaatatgaatacaagtttggct 584
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108992412 caggggagaatgagatggtgatcatgagacctggaaacaaatatgaatacaagtttggct 108992471

                                  
Query: 585       ttgagcttcctcagggg 601
                 |||||||||||||||||
Sbjct: 108992472 ttgagcttcctcagggg 108992488


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,612,423
Number of extensions: 439
Number of successful extensions: 439
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 8
Length of query: 1867
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1845
Effective length of database: 2,808,408,574
Effective search space: 5181513819030
Effective search space used: 5181513819030
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)