Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000692
(1867 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095345.2| thioredoxin interacting protein [Bos taurus]. 716 0.0
Alignment gi|NP_001178963.1| arrestin domain-containing protein 4 [Bos ta... 299 5e-81
Alignment gi|XP_002696551.1| PREDICTED: arrestin domain containing 4 [Bos... 299 5e-81
Alignment gi|NP_001069725.1| arrestin domain-containing protein 3 [Bos ta... 278 9e-75
Alignment gi|NP_001075061.1| arrestin domain-containing protein 2 [Bos ta... 247 3e-65
Alignment gi|NP_001073834.1| arrestin domain-containing protein 1 [Bos ta... 86 1e-16
>ref|NP_001095345.2| thioredoxin interacting protein [Bos taurus].
Length = 391
Score = 716 bits (1849), Expect = 0.0
Identities = 352/391 (90%), Positives = 360/391 (92%)
Frame = +2
Query: 278 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
QQCKQTLDYLRYEDTLLLDD P GENEMVI+RPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61 QQCKQTLDYLRYEDTLLLDDQPAGENEMVILRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
VDYWVKAFLDRPSQPTQETKK+FEVMDLVDVNTPDL+ PVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121 VDYWVKAFLDRPSQPTQETKKNFEVMDLVDVNTPDLLEPVSAKKEKKVSCMFIPDGRVSV 180
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SARIDRKGFCEGDEINIHADFENTCSRIV+PKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEINIHADFENTCSRIVIPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
WVDLNIPDT EAPPCYMD I EDHRLESPTTPLL+DTDGSQD
Sbjct: 301 GLSSRTSSMASQTSSEMSWVDLNIPDTLEAPPCYMDSIAEDHRLESPTTPLLEDTDGSQD 360
Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
SPIFMYAPEF+FMPPPTYSEVDP +LNNNVQ
Sbjct: 361 SPIFMYAPEFRFMPPPTYSEVDPSVLNNNVQ 391
>ref|NP_001178963.1| arrestin domain-containing protein 4 [Bos taurus].
Length = 413
Score = 299 bits (766), Expect = 5e-81
Identities = 160/386 (41%), Positives = 230/386 (59%), Gaps = 8/386 (2%)
Frame = +2
Query: 293 KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS---- 457
++KS +VF D K Y GE VAG V++E E ++A+R+ A G A W +
Sbjct: 17 RVKSLGLVFEDERKGCYSSGETVAGHVLLEAAEPVALRALRLEAQGRATASWGSSAGAAA 76
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
++YL L L + P GE +++++PG K+E+ F F+LP PL TSF GKYG
Sbjct: 77 PAAASEVEYLNV--CLSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTGKYGS 132
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
+ Y V+A L+RP P Q K+ +V+ +DVNTP L+ PV +EK V C F G VS+
Sbjct: 133 IQYCVRAILERPQAPDQSVKRELQVVSHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSL 192
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SA+I+RKG+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 193 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRLMVANVRGN 252
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 1171
HI SG+ +W GK+L++ + PSIL C I+RV Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 253 HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVHYSLAVYIHIPGAKKLMLELPLVIGTVP 312
Query: 1172 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 1348
W+ L +P+ PEAPP Y D++ E+ + P P + +G
Sbjct: 313 YNGFGSRNSSVASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSQHVPPYPQPPNCEG 372
Query: 1349 SQDSPIFMYAPEFKFMPPPTYSEVDP 1426
P+F EF+F PPP YSEVDP
Sbjct: 373 ESCCPMFACIQEFRFQPPPLYSEVDP 398
>ref|XP_002696551.1| PREDICTED: arrestin domain containing 4 [Bos taurus].
Length = 413
Score = 299 bits (766), Expect = 5e-81
Identities = 160/386 (41%), Positives = 230/386 (59%), Gaps = 8/386 (2%)
Frame = +2
Query: 293 KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS---- 457
++KS +VF D K Y GE VAG V++E E ++A+R+ A G A W +
Sbjct: 17 RVKSLGLVFEDERKGCYSSGETVAGHVLLEAAEPVALRALRLEAQGRATASWGSSAGAAA 76
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
++YL L L + P GE +++++PG K+E+ F F+LP PL TSF GKYG
Sbjct: 77 PAAASEVEYLNV--CLSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTGKYGS 132
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
+ Y V+A L+RP P Q K+ +V+ +DVNTP L+ PV +EK V C F G VS+
Sbjct: 133 IQYCVRAILERPQAPDQSVKRELQVVSHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSL 192
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SA+I+RKG+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 193 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRLMVANVRGN 252
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 1171
HI SG+ +W GK+L++ + PSIL C I+RV Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 253 HIASGSTDTWNGKTLKIPPVTPSILDCCIIRVHYSLAVYIHIPGAKKLMLELPLVIGTVP 312
Query: 1172 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 1348
W+ L +P+ PEAPP Y D++ E+ + P P + +G
Sbjct: 313 YNGFGSRNSSVASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSQHVPPYPQPPNCEG 372
Query: 1349 SQDSPIFMYAPEFKFMPPPTYSEVDP 1426
P+F EF+F PPP YSEVDP
Sbjct: 373 ESCCPMFACIQEFRFQPPPLYSEVDP 398
>ref|NP_001069725.1| arrestin domain-containing protein 3 [Bos taurus].
Length = 414
Score = 278 bits (712), Expect = 9e-75
Identities = 154/397 (38%), Positives = 228/397 (57%), Gaps = 19/397 (4%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLY 182
Query: 785 CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
C F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K
Sbjct: 183 CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242
Query: 965 LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
+ Q ++++RG + SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ +
Sbjct: 243 VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302
Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
L+LPLVI W+ L++P+ PEAPP Y +++ E+ R +
Sbjct: 303 LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLGLSLPERPEAPPSYAEVVTEEQRRNNL 362
Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
DD + + P+F Y EF+F+PPP YSE+DP
Sbjct: 363 APGSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|NP_001075061.1| arrestin domain-containing protein 2 [Bos taurus].
Length = 407
Score = 247 bits (630), Expect = 3e-65
Identities = 142/395 (35%), Positives = 219/395 (55%), Gaps = 13/395 (3%)
Frame = +2
Query: 281 VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
++F K+K+F V+ + E V+ G+ VAGRV++E+ R+ ++++ A G A V W
Sbjct: 1 MLFDKVKAFVVLLDGASAGSEPVFSGGQAVAGRVLLELAGPARVSSLKLRARGRAHVHWT 60
Query: 449 QGSQQCKQTLDYLRYEDTLLLDDHPT-----GENEMVIMRPGNKYEYKFGFELPQGPLGT 613
+ T Y + + + H G E + PG ++E+ F F+LP L T
Sbjct: 61 ESRSAGSSTAYTQSYSERVEVVSHRATLLAPGTGETTTLPPG-RHEFPFSFQLPP-TLVT 118
Query: 614 SFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMF 793
SF+GK+G V Y +KA L RP P + T+K F V++ VD+NTP L+AP + +EK +
Sbjct: 119 SFEGKHGSVRYCIKATLHRPWVPARRTRKVFTVIEPVDINTPALLAPQAGAREKIARSWY 178
Query: 794 IPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQ 973
G VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K
Sbjct: 179 SNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRA 238
Query: 974 KLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDL 1153
++S+ G + G A W+G++LR+ + PSIL C +L V+Y L + V +PGS K++L+L
Sbjct: 239 VVASLSGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLEL 298
Query: 1154 PLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPT 1321
PLVI W +P+ PEAPP Y +++P++ +E
Sbjct: 299 PLVIGTIPLHPFGSRSSSVGSHASFLMDWGLGILPERPEAPPEYSEVVPDEEVAAMEQSL 358
Query: 1322 TPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
PLL D D S + P F Y EF++ PPP YSE DP
Sbjct: 359 LPLLQDPDMSMEGPFFAYIQEFRYRPPPLYSEEDP 393
>ref|NP_001073834.1| arrestin domain-containing protein 1 [Bos taurus].
Length = 426
Score = 85.5 bits (210), Expect = 1e-16
Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 2/293 (0%)
Frame = +2
Query: 293 KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
+++ FEV N VY GE + G V V + +A+R+ G +V +
Sbjct: 3 RVQLFEVRLNHGRVVYSPGEPLVGAVRVRLAAPLPFRAIRVTCTGSCRV--SNKANDSAW 60
Query: 473 TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
++ + L L D + P ++ + F F LP TSF+G +G + + V
Sbjct: 61 VVEESYFNSALSLADKGS--------LPAGEHSFPFQFLLP-ATAPTSFEGPFGKIVHQV 111
Query: 653 KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
+A +D P + + F ++ +++N+ PD+ P A KK S + G V ++A
Sbjct: 112 RATIDTPRFSKDHQCSRVFYILSPLNLNSIPDIEQPNVASTTKKFSYKLVKTGSVVLTAS 171
Query: 827 IDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHII 1006
D +G+ G + + AD EN + P A + + + + ++ V G +
Sbjct: 172 TDLRGYVVGQVLRLQADIENQSGKDTSPVVASLLQKVSYKARRWIYDVRTIAEVEGAGVK 231
Query: 1007 SGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
+ A W+ + L + ++ GC+++ V+Y+L + + P + ++ LP+ I
Sbjct: 232 AWRRAQWQEQVLVPALPQSALPGCSLIHVDYYLQVSLKQP---EAVVTLPVFI 281
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,804,836
Number of extensions: 1868605
Number of successful extensions: 4798
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4779
Number of HSP's successfully gapped: 6
Length of query: 622
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 514
Effective length of database: 14,107,870
Effective search space: 7251445180
Effective search space used: 7251445180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000692
(1867 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533037.2| PREDICTED: similar to thioredoxin interacting p... 721 0.0
Alignment gi|XP_859453.1| PREDICTED: similar to thioredoxin interacting p... 706 0.0
Alignment gi|XP_545831.2| PREDICTED: similar to arrestin domain containin... 297 2e-80
Alignment gi|XP_546029.1| PREDICTED: similar to arrestin domain containin... 276 6e-74
Alignment gi|XP_857636.1| PREDICTED: similar to arrestin domain containin... 262 9e-70
Alignment gi|XP_865525.1| PREDICTED: similar to arrestin domain containin... 233 4e-61
Alignment gi|XP_865505.1| PREDICTED: similar to arrestin domain containin... 231 2e-60
Alignment gi|XP_857476.1| PREDICTED: similar to arrestin domain containin... 230 4e-60
Alignment gi|XP_852327.1| PREDICTED: similar to arrestin domain containin... 229 5e-60
Alignment gi|XP_857559.1| PREDICTED: similar to arrestin domain containin... 103 7e-22
>ref|XP_533037.2| PREDICTED: similar to thioredoxin interacting protein isoform 2
[Canis familiaris].
Length = 391
Score = 721 bits (1861), Expect = 0.0
Identities = 353/391 (90%), Positives = 363/391 (92%)
Frame = +2
Query: 278 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
MVMFKKIKSFEVVFNDPEKVYG GEKVAGRV+VEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVVVEVCEVTRVKAVRILACGVAKVLWMQGS 60
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
QQCKQT +YLR+EDTLLL+D PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61 QQCKQTSEYLRFEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
VDYWVKAFLDRPSQPTQETKK FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDG+VSV
Sbjct: 121 VDYWVKAFLDRPSQPTQETKKFFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGQVSV 180
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SARIDRKGFCEGDEI+IHADFENTCSRI+VPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEISIHADFENTCSRIMVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 360
Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
SPIFMYAPEFKFMPPPTY+EVDP ILNNNVQ
Sbjct: 361 SPIFMYAPEFKFMPPPTYTEVDPSILNNNVQ 391
>ref|XP_859453.1| PREDICTED: similar to thioredoxin interacting protein isoform 3
[Canis familiaris].
Length = 385
Score = 706 bits (1822), Expect = 0.0
Identities = 348/391 (89%), Positives = 358/391 (91%)
Frame = +2
Query: 278 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
MVMFKKIKSFEVVFNDPEKVYG GEKVAGRV+VEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVVVEVCEVTRVKAVRILACGVAKVLWMQGS 60
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
QQCKQT +YLR+EDTLLL+D PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61 QQCKQTSEYLRFEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
VDYWVKAFLDRPSQPTQETKK FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDG+VSV
Sbjct: 121 VDYWVKAFLDRPSQPTQETKKFFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGQVSV 180
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SARIDRKGFCEGDEI+IHADFENTCSRI+VPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEISIHADFENTCSRIMVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
HIISGTCASWRGKSLRVQKIRPSILGCNILR IYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILR------IYVSVPGSKKVILDLPLVIGSRS 294
Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 295 GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 354
Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
SPIFMYAPEFKFMPPPTY+EVDP ILNNNVQ
Sbjct: 355 SPIFMYAPEFKFMPPPTYTEVDPSILNNNVQ 385
>ref|XP_545831.2| PREDICTED: similar to arrestin domain containing 4 [Canis
familiaris].
Length = 412
Score = 297 bits (761), Expect = 2e-80
Identities = 158/386 (40%), Positives = 229/386 (59%), Gaps = 8/386 (2%)
Frame = +2
Query: 293 KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG----S 457
++KS +VF D K Y GE VAG V++E E ++++R+ A G A W +
Sbjct: 16 RVKSLGLVFEDERKGCYSSGETVAGHVLLEAAEPVALRSLRLEAHGRATAAWGPSPGAAA 75
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
++YL L L + P GE +++++PG K+E+ F F+LP PL TSF GKYG
Sbjct: 76 PAAASEVEYLNVR--LSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTGKYGS 131
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
+ Y V+A L+RP P Q K+ +V+ +DVNTP L+ PV +EK V C F G VS+
Sbjct: 132 IQYCVRAILERPKVPDQSVKRELQVISHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSL 191
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SA+I+RKG+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++VRGN
Sbjct: 192 SAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGRTKSVRHMVANVRGN 251
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XX 1171
HI SG +W GK+L++ + PSIL C I+RV+Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 252 HIASGGTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTIP 311
Query: 1172 XXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTTPLLDDTDG 1348
W+ L +P+ PEAPP Y D++ E+ P P + +G
Sbjct: 312 FNGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPPNYADVVSEEEFCRHVPPYPQPPEGEG 371
Query: 1349 SQDSPIFMYAPEFKFMPPPTYSEVDP 1426
P+F EF+F PPP YSE+DP
Sbjct: 372 EACCPVFACIQEFRFQPPPLYSEIDP 397
>ref|XP_546029.1| PREDICTED: similar to arrestin domain containing 3 isoform 1 [Canis
familiaris].
Length = 414
Score = 276 bits (705), Expect = 6e-74
Identities = 153/397 (38%), Positives = 227/397 (57%), Gaps = 19/397 (4%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182
Query: 785 CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
C F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K
Sbjct: 183 CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242
Query: 965 LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
+ Q ++++RG + SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ +
Sbjct: 243 VKQLVANLRGESLSSGKTDTWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302
Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
L+LPLVI W+ L++ + PEAPP Y +++ E+ R +
Sbjct: 303 LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLGLSLRERPEAPPSYAEVVTEEQRRNNL 362
Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
DD + + P+F Y EF+F+PPP YSE+DP
Sbjct: 363 APVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|XP_857636.1| PREDICTED: similar to arrestin domain containing 3 isoform 5 [Canis
familiaris].
Length = 408
Score = 262 bits (669), Expect = 9e-70
Identities = 150/397 (37%), Positives = 222/397 (55%), Gaps = 19/397 (4%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182
Query: 785 CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
C F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K
Sbjct: 183 CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242
Query: 965 LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
+ Q ++++RG + SG +W GK L++ + PSIL C+I+RV YV +PG+ +
Sbjct: 243 VKQLVANLRGESLSSGKTDTWNGKLLKIPPVSPSILDCSIIRV------YVDIPGAMDLF 296
Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
L+LPLVI W+ L++ + PEAPP Y +++ E+ R +
Sbjct: 297 LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLGLSLRERPEAPPSYAEVVTEEQRRNNL 356
Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
DD + + P+F Y EF+F+PPP YSE+DP
Sbjct: 357 APVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 393
>ref|XP_865525.1| PREDICTED: similar to arrestin domain containing 2 isoform 1 isoform
3 [Canis familiaris].
Length = 407
Score = 233 bits (595), Expect = 4e-61
Identities = 141/399 (35%), Positives = 218/399 (54%), Gaps = 17/399 (4%)
Frame = +2
Query: 281 VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
++F K+K+F V + E V+ G+ VAGRV++E+ R+ A+++ A G A V W
Sbjct: 1 MLFDKVKAFVVQLDGASAGAEPVFSGGQAVAGRVLLELAGPARVGALKLRARGRAHVHWT 60
Query: 449 QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
+ +Q + ++ + + TLL D TGE + P ++E+ F F+LP
Sbjct: 61 ESRSAGSSTAYTQSYSERVEVVSHRATLLAPD--TGETTTL---PAGRHEFPFSFQLPP- 114
Query: 602 PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
L TSF+GK+G V Y +KA L RP P + +K F V++ VD+NTP L+AP + EK
Sbjct: 115 TLVTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGALEKVA 174
Query: 782 SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
+ G VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K
Sbjct: 175 RSWYSNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARK 234
Query: 962 VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
++S+ G + G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K+
Sbjct: 235 QKRAVVASLAGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKL 294
Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RL 1309
+L+LPLVI W P+ PEAPP Y +++ + +
Sbjct: 295 LLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAV 354
Query: 1310 ESPTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
+ P L DTD S + P F Y EF++ PPP YSE DP
Sbjct: 355 GQSSFPPLQDTDLSFEGPFFAYIQEFRYRPPPLYSEEDP 393
>ref|XP_865505.1| PREDICTED: similar to arrestin domain containing 2 isoform 1 isoform
2 [Canis familiaris].
Length = 407
Score = 231 bits (589), Expect = 2e-60
Identities = 141/397 (35%), Positives = 213/397 (53%), Gaps = 15/397 (3%)
Frame = +2
Query: 281 VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
++F K+K+F V + E V+ G+ VAGRV++E+ R+ A+++ A G A V W
Sbjct: 1 MLFDKVKAFVVQLDGASAGAEPVFSGGQAVAGRVLLELAGPARVGALKLRARGRAHVHWT 60
Query: 449 QGSQQCKQTLDYLRYEDT-------LLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPL 607
+ T Y + LLL TGE + P ++E+ F F+LP L
Sbjct: 61 ESRSAGSSTAYTQSYSERVEVLNLPLLLLPADTGETTTL---PAGRHEFPFSFQLPP-TL 116
Query: 608 GTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSC 787
TSF+GK+G V Y +KA L RP P + +K F V++ VD+NTP L+AP + EK
Sbjct: 117 VTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGALEKVARS 176
Query: 788 MFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVL 967
+ G VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K
Sbjct: 177 WYSNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQK 236
Query: 968 TQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVIL 1147
++S+ G + G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L
Sbjct: 237 RAVVASLAGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKLLL 296
Query: 1148 DLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLES 1315
+LPLVI W P+ PEAPP Y +++ + +
Sbjct: 297 ELPLVIGTIPLHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAVGQ 356
Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
+ P L DTD S + P F Y EF++ PPP YSE DP
Sbjct: 357 SSFPPLQDTDLSFEGPFFAYIQEFRYRPPPLYSEEDP 393
>ref|XP_857476.1| PREDICTED: similar to arrestin domain containing 3 isoform 2 [Canis
familiaris].
Length = 351
Score = 230 bits (586), Expect = 4e-60
Identities = 127/307 (41%), Positives = 186/307 (60%), Gaps = 16/307 (5%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182
Query: 785 CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
C F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K
Sbjct: 183 CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242
Query: 965 LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
+ Q ++++RG + SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ +
Sbjct: 243 VKQLVANLRGESLSSGKTDTWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302
Query: 1145 LDLPLVI 1165
L+LPLVI
Sbjct: 303 LNLPLVI 309
>ref|XP_852327.1| PREDICTED: similar to arrestin domain containing 2 isoform 2 isoform
1 [Canis familiaris].
Length = 402
Score = 229 bits (585), Expect = 5e-60
Identities = 139/390 (35%), Positives = 209/390 (53%), Gaps = 13/390 (3%)
Frame = +2
Query: 296 IKSFEV-VFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG------ 454
++SF + + P Y GE++ GRV++E R++A+ + A G A W++G
Sbjct: 6 VRSFALELARGPGGAYRGGERLCGRVLLEAAAPLRVRALEVAARGGAATHWLEGRSVGIN 65
Query: 455 --SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGK 628
S YLR LL D TGE + P ++E+ F F+LP L TSF+GK
Sbjct: 66 AVSSDYAAAETYLRRRQLLLRD---TGETTTL---PAGRHEFPFSFQLPP-TLVTSFEGK 118
Query: 629 YGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGR 808
+G V Y +KA L RP P + +K F V++ VD+NTP L+AP + EK + G
Sbjct: 119 HGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGALEKVARSWYSNRGL 178
Query: 809 VSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSV 988
VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+
Sbjct: 179 VSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASL 238
Query: 989 RGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI- 1165
G + G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L+LPLVI
Sbjct: 239 AGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYSLKVCVDIPGTSKLLLELPLVIG 298
Query: 1166 -XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH--RLESPTTPLLD 1336
W P+ PEAPP Y +++ + + + P L
Sbjct: 299 TIPLHPFGSRSSSVGSHASFLLDWGLGAPPERPEAPPEYSEVVADGEVAAVGQSSFPPLQ 358
Query: 1337 DTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
DTD S + P F Y EF++ PPP YSE DP
Sbjct: 359 DTDLSFEGPFFAYIQEFRYRPPPLYSEEDP 388
>ref|XP_857559.1| PREDICTED: similar to arrestin domain containing 3 isoform 4 [Canis
familiaris].
Length = 174
Score = 103 bits (256), Expect = 7e-22
Identities = 65/171 (38%), Positives = 94/171 (54%), Gaps = 16/171 (9%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPV 757
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L+ +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLVRI 173
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 75,007,069
Number of extensions: 1931766
Number of successful extensions: 4507
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4479
Number of HSP's successfully gapped: 12
Length of query: 622
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 513
Effective length of database: 15,240,880
Effective search space: 7818571440
Effective search space used: 7818571440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000692
(1867 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006463.3| thioredoxin-interacting protein [Homo sapiens]. 726 0.0
Alignment gi|NP_899232.2| arrestin domain-containing protein 4 [Homo sapi... 300 3e-81
Alignment gi|NP_065852.1| arrestin domain-containing protein 3 [Homo sapi... 280 3e-75
Alignment gi|NP_056498.1| arrestin domain-containing protein 2 isoform 1 ... 240 3e-63
Alignment gi|NP_001020775.1| arrestin domain-containing protein 2 isoform... 233 5e-61
Alignment gi|NP_689498.1| arrestin domain-containing protein 1 [Homo sapi... 79 2e-14
>ref|NP_006463.3| thioredoxin-interacting protein [Homo sapiens].
Length = 391
Score = 726 bits (1875), Expect = 0.0
Identities = 356/391 (91%), Positives = 364/391 (93%)
Frame = +2
Query: 278 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
QQCKQT +YLRYEDTLLL+D PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61 QQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
VDYWVKAFLDRPSQPTQETKK+FEV+DLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121 VDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SARIDRKGFCEGDEI+IHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
WVDLNIPDTPEAPPCYMD+IPEDHRLESPTTPLLDD DGSQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQD 360
Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
SPIFMYAPEFKFMPPPTY+EVDPCILNNNVQ
Sbjct: 361 SPIFMYAPEFKFMPPPTYTEVDPCILNNNVQ 391
>ref|NP_899232.2| arrestin domain-containing protein 4 [Homo sapiens].
Length = 418
Score = 300 bits (768), Expect = 3e-81
Identities = 163/394 (41%), Positives = 232/394 (58%), Gaps = 16/394 (4%)
Frame = +2
Query: 293 KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCK 469
++KS +VF D K Y GE VAG V++E E ++A+R+ A G A W G C
Sbjct: 16 RVKSLGLVFEDERKGCYSSGETVAGHVLLEASEPVALRALRLEAQGRATAAW--GPSTCP 73
Query: 470 QT------------LDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGT 613
+ ++YL L L + P GE +++++PG K+E+ F F+LP PL T
Sbjct: 74 RASASTAALAVFSEVEYLNVR--LSLREPPAGEG-IILLQPG-KHEFPFRFQLPSEPLVT 129
Query: 614 SFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMF 793
SF GKYG + Y V+A L+RP P Q K+ +V+ VDVNTP L+ PV +EK V C F
Sbjct: 130 SFTGKYGSIQYCVRAVLERPKVPDQSVKRELQVVSHVDVNTPALLTPVLKTQEKMVGCWF 189
Query: 794 IPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQ 973
G VS+SA+I+RKG+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK +
Sbjct: 190 FTSGPVSLSAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTIRH 249
Query: 974 KLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDL 1153
+++VRGNHI SG+ +W GK+L++ + PSIL C I+RV+Y L +Y+ +PG+KK++L+L
Sbjct: 250 MVANVRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLEL 309
Query: 1154 PLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTT 1324
PLVI W+ L +P+ PEAPP Y D++ E+ P
Sbjct: 310 PLVIGTIPYNGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHIPPY 369
Query: 1325 PLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
P + +G P+F EF+F PPP YSEVDP
Sbjct: 370 PQPPNCEGEVCCPVFACIQEFRFQPPPLYSEVDP 403
>ref|NP_065852.1| arrestin domain-containing protein 3 [Homo sapiens].
Length = 414
Score = 280 bits (716), Expect = 3e-75
Identities = 154/397 (38%), Positives = 228/397 (57%), Gaps = 19/397 (4%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182
Query: 785 CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
C F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K
Sbjct: 183 CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242
Query: 965 LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
+ Q ++++RG + SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ +
Sbjct: 243 VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302
Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
L+LPLVI W+ L++P+ PEAPP Y +++ E+ R +
Sbjct: 303 LNLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLSLSLPERPEAPPSYAEVVTEEQRRNNL 362
Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
DD + + P+F Y EF+F+PPP YSE+DP
Sbjct: 363 APVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|NP_056498.1| arrestin domain-containing protein 2 isoform 1 [Homo sapiens].
Length = 407
Score = 240 bits (613), Expect = 3e-63
Identities = 145/410 (35%), Positives = 224/410 (54%), Gaps = 17/410 (4%)
Frame = +2
Query: 281 VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
++F K+K+F V + E V+ G+ VAGRV++E+ R+ A+R+ A G A V W
Sbjct: 1 MLFDKVKAFSVQLDGATAGVEPVFSGGQAVAGRVLLELSSAARVGALRLRARGRAHVHWT 60
Query: 449 QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
+ +Q + ++ + + TLL D TGE + P ++E+ F F+LP
Sbjct: 61 ESRSAGSSTAYTQSYSERVEVVSHRATLLAPD--TGETTTL---PPGRHEFLFSFQLPP- 114
Query: 602 PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
L TSF+GK+G V Y +KA L RP P + +K F V++ VD+NTP L+AP + +EK
Sbjct: 115 TLVTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGAREKVA 174
Query: 782 SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
+ G VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K
Sbjct: 175 RSWYCNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARK 234
Query: 962 VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
++S+ G + G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K+
Sbjct: 235 QKRAVVASLAGEPVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKL 294
Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDII--PEDHRL 1309
+L+LPLVI W +P+ PEAPP Y +++ E+ L
Sbjct: 295 LLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAAL 354
Query: 1310 ESPTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ*TC 1459
PL D D S + P F Y EF++ PPP YSE DP L +++ C
Sbjct: 355 GQSPFPLPQDPDMSLEGPFFAYIQEFRYRPPPLYSEEDPNPLLGDMRPRC 404
>ref|NP_001020775.1| arrestin domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 402
Score = 233 bits (594), Expect = 5e-61
Identities = 142/401 (35%), Positives = 215/401 (53%), Gaps = 13/401 (3%)
Frame = +2
Query: 296 IKSFEV-VFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG------ 454
++SF + + P Y GE++ GRV++E R++A+ + A G A W++G
Sbjct: 6 VRSFALELARGPGGAYRGGERLCGRVLLEAAAPLRVRALEVKARGGAATHWLEGRSVGVN 65
Query: 455 --SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGK 628
S YLR LL D TGE + P ++E+ F F+LP L TSF+GK
Sbjct: 66 AVSSDYAAAETYLRRRQLLLRD---TGETTTL---PPGRHEFLFSFQLPP-TLVTSFEGK 118
Query: 629 YGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGR 808
+G V Y +KA L RP P + +K F V++ VD+NTP L+AP + +EK + G
Sbjct: 119 HGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGAREKVARSWYCNRGL 178
Query: 809 VSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSV 988
VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+
Sbjct: 179 VSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASL 238
Query: 989 RGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI- 1165
G + G A W+G++LR+ + PSIL C +L V+Y L + V +PG+ K++L+LPLVI
Sbjct: 239 AGEPVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKLLLELPLVIG 298
Query: 1166 -XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDII--PEDHRLESPTTPLLD 1336
W +P+ PEAPP Y +++ E+ L PL
Sbjct: 299 TIPLHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAALGQSPFPLPQ 358
Query: 1337 DTDGSQDSPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ*TC 1459
D D S + P F Y EF++ PPP YSE DP L +++ C
Sbjct: 359 DPDMSLEGPFFAYIQEFRYRPPPLYSEEDPNPLLGDMRPRC 399
>ref|NP_689498.1| arrestin domain-containing protein 1 [Homo sapiens].
Length = 433
Score = 78.6 bits (192), Expect = 2e-14
Identities = 67/294 (22%), Positives = 134/294 (45%), Gaps = 3/294 (1%)
Frame = +2
Query: 293 KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
+++ FE+ + VY GE +AG V V + +A+R+ G V +
Sbjct: 3 RVQLFEISLSHGRVVYSPGEPLAGTVRVRLGAPLPFRAIRVTCIGSCGV--SNKANDTAW 60
Query: 473 TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
++ + +L L D + P ++ + F F LP TSF+G +G + + V
Sbjct: 61 VVEEGYFNSSLSLADKGS--------LPAGEHSFPFQFLLP-ATAPTSFEGPFGKIVHQV 111
Query: 653 KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
+A + P + F ++ +++N+ PD+ P A KK S + G V ++A
Sbjct: 112 RAAIHTPRFSKDHKCSLVFYILSPLNLNSIPDIEQPNVASATKKFSYKLVKTGSVVLTAS 171
Query: 827 IDRKGFCEGDEINIHADFENTCSRIVVP-KAAIVARHTYLANGQTKVLTQKLSSVRGNHI 1003
D +G+ G + +HAD EN + P A+++ + +Y A + + ++ V G +
Sbjct: 172 TDLRGYVVGQALQLHADVENQSGKDTSPVVASLLQKVSYKAKRWIHDV-RTIAEVEGAGV 230
Query: 1004 ISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
+ A W + L + ++ GC+++ ++Y+L + + P + + LP+ I
Sbjct: 231 KAWRRAQWHEQILVPALPQSALPGCSLIHIDYYLQVSLKAP---EATVTLPVFI 281
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,746,914
Number of extensions: 1912258
Number of successful extensions: 4806
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4794
Number of HSP's successfully gapped: 6
Length of query: 622
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 513
Effective length of database: 14,704,088
Effective search space: 7543197144
Effective search space used: 7543197144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000692
(1867 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076208.2| thioredoxin-interacting protein isoform 2 [Mus ... 717 0.0
Alignment gi|NP_001009935.1| thioredoxin-interacting protein isoform 1 [M... 712 0.0
Alignment gi|NP_001036057.1| arrestin domain containing 4 isoform 1 [Mus ... 290 2e-78
Alignment gi|NP_001036056.1| arrestin domain-containing protein 3 [Mus mu... 278 1e-74
Alignment gi|NP_081836.1| arrestin domain-containing protein 2 [Mus muscu... 224 2e-58
Alignment gi|NP_079825.2| arrestin domain containing 4 isoform 2 [Mus mus... 223 4e-58
Alignment gi|NP_848495.2| arrestin domain-containing protein 1 isoform b ... 83 6e-16
Alignment gi|NP_001155957.1| arrestin domain-containing protein 1 isoform... 82 2e-15
>ref|NP_076208.2| thioredoxin-interacting protein isoform 2 [Mus musculus].
Length = 396
Score = 717 bits (1850), Expect = 0.0
Identities = 349/389 (89%), Positives = 360/389 (92%)
Frame = +2
Query: 278 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
QQCKQTLDYLRYEDTLLL++ PTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61 QQCKQTLDYLRYEDTLLLEEQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
VDYWVKAFLDRPSQPTQE KK+FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121 VDYWVKAFLDRPSQPTQEAKKNFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SARIDRKGFCEGD+I+IHADFENTCSRIVVPKAAIVARHTYLANGQTKV TQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDDISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVFTQKLSSVRGN 240
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
HIISGTCASWRGKSLRVQKIRPSILGCNIL+VEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILKVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDD D SQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDVDDSQD 360
Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNN 1444
SPIFMYAPEF+FMPPPTY+EVDPC+LNNN
Sbjct: 361 SPIFMYAPEFQFMPPPTYTEVDPCVLNNN 389
>ref|NP_001009935.1| thioredoxin-interacting protein isoform 1 [Mus musculus].
Length = 397
Score = 712 bits (1838), Expect = 0.0
Identities = 349/390 (89%), Positives = 360/390 (92%), Gaps = 1/390 (0%)
Frame = +2
Query: 278 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
MVMFKKIKSFEVVFNDPEKVYG GEKVAGRVIVEVCEVTR+KAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60
Query: 458 QQCKQTLDYLRYEDTLLLDDHPT-GENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG 634
QQCKQTLDYLRYEDTLLL++ PT GENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG
Sbjct: 61 QQCKQTLDYLRYEDTLLLEEQPTAGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYG 120
Query: 635 CVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVS 814
CVDYWVKAFLDRPSQPTQE KK+FEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVS
Sbjct: 121 CVDYWVKAFLDRPSQPTQEAKKNFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVS 180
Query: 815 VSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRG 994
VSARIDRKGFCEGD+I+IHADFENTCSRIVVPKAAIVARHTYLANGQTKV TQKLSSVRG
Sbjct: 181 VSARIDRKGFCEGDDISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVFTQKLSSVRG 240
Query: 995 NHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXX 1174
NHIISGTCASWRGKSLRVQKIRPSILGCNIL+VEY LLIYVSVPGSKKVILDLPLVI
Sbjct: 241 NHIISGTCASWRGKSLRVQKIRPSILGCNILKVEYSLLIYVSVPGSKKVILDLPLVIGSR 300
Query: 1175 XXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQ 1354
W+DLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDD D SQ
Sbjct: 301 SGLSSRTSSMASRTSSEMSWIDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDVDDSQ 360
Query: 1355 DSPIFMYAPEFKFMPPPTYSEVDPCILNNN 1444
DSPIFMYAPEF+FMPPPTY+EVDPC+LNNN
Sbjct: 361 DSPIFMYAPEFQFMPPPTYTEVDPCVLNNN 390
>ref|NP_001036057.1| arrestin domain containing 4 isoform 1 [Mus musculus].
Length = 415
Score = 290 bits (743), Expect = 2e-78
Identities = 159/392 (40%), Positives = 226/392 (57%), Gaps = 14/392 (3%)
Frame = +2
Query: 293 KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQ------ 451
++KS +VF D K Y GE VAG V++E E ++ +R+ A G A W
Sbjct: 13 RVKSLGLVFEDESKGCYSSGETVAGHVLLEAAEPVALRGLRLEAQGRATSAWGPSAGARV 72
Query: 452 ----GSQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSF 619
GS ++YL +LL + P GE + +++PG K+E+ F F+LP PL TSF
Sbjct: 73 CIGGGSPAASSEVEYLNLRLSLL--EAPAGEG-VTLLQPG-KHEFPFRFQLPSEPLATSF 128
Query: 620 KGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIP 799
GKYG + Y V+A L+RP P Q ++ +V+ VDVNTP L+ P+ +EK V C
Sbjct: 129 TGKYGSIQYCVRAVLERPQVPDQSVRRELQVVSHVDVNTPPLLTPMLKTQEKMVGCWLFT 188
Query: 800 DGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKL 979
G VS+S +I+RKG+C G+ I I+A+ EN SR+VVPKAAI TYLA+G+TK + +
Sbjct: 189 SGPVSLSVKIERKGYCNGEAIPIYAEIENCSSRLVVPKAAIFQTQTYLASGKTKTVRHMV 248
Query: 980 SSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPL 1159
++VRGNHI SG+ +W GK L++ + PSIL C I+RV+Y L +Y+ +PG+K+++L+LPL
Sbjct: 249 ANVRGNHIGSGSTDTWNGKMLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKRLMLELPL 308
Query: 1160 VI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTTPL 1330
VI W+ L +P+ PEAPP Y D++ E+ P P
Sbjct: 309 VIGTIPYSGFGRRNSSVASQFSMDMCWLALALPEQPEAPPNYADVVSEEEFSRHVPPYPQ 368
Query: 1331 LDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
D DG +F EF+F PPP YSEVDP
Sbjct: 369 PSDCDGEACYSMFACIQEFRFQPPPLYSEVDP 400
>ref|NP_001036056.1| arrestin domain-containing protein 3 [Mus musculus].
Length = 414
Score = 278 bits (711), Expect = 1e-74
Identities = 154/397 (38%), Positives = 227/397 (57%), Gaps = 19/397 (4%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182
Query: 785 CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
C F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K
Sbjct: 183 CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242
Query: 965 LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
+ Q ++++RG + SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ ++
Sbjct: 243 VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLL 302
Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
L LPLVI W+ L +P+ PEAPP Y +++ E+ R +
Sbjct: 303 LSLPLVIGTIPLHPFGSRTSSVSSQCSMSMNWLALALPERPEAPPSYAEVVTEEQRRNNL 362
Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
DD + + P+F Y EF+F+PPP YSE+DP
Sbjct: 363 APVGACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399
>ref|NP_081836.1| arrestin domain-containing protein 2 [Mus musculus].
Length = 407
Score = 224 bits (571), Expect = 2e-58
Identities = 138/399 (34%), Positives = 214/399 (53%), Gaps = 17/399 (4%)
Frame = +2
Query: 281 VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
++F K+K+F V + E V+ G+ VAGRV++E+ R+ A+R+ A G A+ W
Sbjct: 1 MLFDKVKAFVVEIDGARTGTEPVFHGGQAVAGRVLLELAGAARVGALRLRARGRARAHWT 60
Query: 449 QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
+ +Q + ++ + + TLL D +G+ + P ++E+ F F+LP
Sbjct: 61 ESRSAGSSTAYTQSYSERVEVVNHRATLLAPD--SGD---IATLPAGRHEFPFSFQLPIS 115
Query: 602 PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
L TSF+GK+G V Y +KA L RP P + +K F V++ VD+NTP L+ P + +EK
Sbjct: 116 -LVTSFEGKHGSVRYSIKATLHRPWVPARCARKVFTVIEPVDINTPALLEPQAGAREKVA 174
Query: 782 SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
+ G VS+SA+IDRKG+ G+ I I A+ +N +R V P+AA+V T++A G K
Sbjct: 175 RSWYCTRGLVSLSAKIDRKGYTPGEVIPIFAEIDNGSTRAVQPRAALVQTQTFMARGARK 234
Query: 962 VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
++SV G + A W G++LR+ + PSIL C +L V+Y L ++V +PGS K+
Sbjct: 235 QKRAVVASVDGEPVGPNRRALWPGRALRIPPVGPSILQCRVLSVDYSLKVFVDIPGSSKL 294
Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES 1315
+L+LPLVI W + D PEAPP Y +++ E + +
Sbjct: 295 LLELPLVIGTVPLHPLGSRSASVGSRASFLQDWGLCTMMDRPEAPPEYSEVVRESQLVCA 354
Query: 1316 PTTP--LLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
P LL D + + P F EF++ PPP YSE DP
Sbjct: 355 SPGPSSLLHDLGVTTEGPYFACLQEFRYCPPPLYSEEDP 393
>ref|NP_079825.2| arrestin domain containing 4 isoform 2 [Mus musculus].
Length = 296
Score = 223 bits (568), Expect = 4e-58
Identities = 120/284 (42%), Positives = 172/284 (60%), Gaps = 11/284 (3%)
Frame = +2
Query: 293 KIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQ------ 451
++KS +VF D K Y GE VAG V++E E ++ +R+ A G A W
Sbjct: 13 RVKSLGLVFEDESKGCYSSGETVAGHVLLEAAEPVALRGLRLEAQGRATSAWGPSAGARV 72
Query: 452 ----GSQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSF 619
GS ++YL +LL + P GE + +++PG K+E+ F F+LP PL TSF
Sbjct: 73 CIGGGSPAASSEVEYLNLRLSLL--EAPAGEG-VTLLQPG-KHEFPFRFQLPSEPLATSF 128
Query: 620 KGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIP 799
GKYG + Y V+A L+RP P Q ++ +V+ VDVNTP L+ P+ +EK V C
Sbjct: 129 TGKYGSIQYCVRAVLERPQVPDQSVRRELQVVSHVDVNTPPLLTPMLKTQEKMVGCWLFT 188
Query: 800 DGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKL 979
G VS+S +I+RKG+C G+ I I+A+ EN SR+VVPKAAI TYLA+G+TK + +
Sbjct: 189 SGPVSLSVKIERKGYCNGEAIPIYAEIENCSSRLVVPKAAIFQTQTYLASGKTKTVRHMV 248
Query: 980 SSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLI 1111
++VRGNHI SG+ +W GK L++ + PSIL C I+RV+Y L +
Sbjct: 249 ANVRGNHIGSGSTDTWNGKMLKIPPVTPSILDCCIIRVDYSLAV 292
>ref|NP_848495.2| arrestin domain-containing protein 1 isoform b [Mus musculus].
Length = 433
Score = 83.2 bits (204), Expect = 6e-16
Identities = 67/293 (22%), Positives = 134/293 (45%), Gaps = 2/293 (0%)
Frame = +2
Query: 293 KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
+++ FE+ + VYG GE +AG V + + +A+R+ G V +
Sbjct: 3 RVQLFEIRLSQGRVVYGPGEPLAGTVHLRLGAPLPFRAIRVTCMGSCGV--STKANDGAW 60
Query: 473 TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
++ + +L L D + P ++ + F F LP TSF+G +G + + V
Sbjct: 61 VVEESYFNSSLSLADKGS--------LPAGEHNFPFQFLLP-ATAPTSFEGPFGKIVHQV 111
Query: 653 KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
+A +D P + F ++ +++N+ PD+ P A KK S + G V ++A
Sbjct: 112 RASIDTPRFSKDHKCSLVFYILSPLNLNSIPDIEQPNVASTTKKFSYKLVKTGNVVLTAS 171
Query: 827 IDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHII 1006
D +G+ G + + AD EN + P A + + +Y A + + ++ V G +
Sbjct: 172 TDLRGYVVGQVLRLQADIENQSGKDTSPVVASLLQVSYKAK-RWIYDVRTIAEVEGTGVK 230
Query: 1007 SGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
+ A W+ + L + ++ GC+++ ++Y+L + + P + + LPL +
Sbjct: 231 AWRRAQWQEQILVPALPQSALPGCSLIHIDYYLQVSMKAP---EATVTLPLFV 280
>ref|NP_001155957.1| arrestin domain-containing protein 1 isoform a [Mus musculus].
Length = 434
Score = 81.6 bits (200), Expect = 2e-15
Identities = 65/293 (22%), Positives = 131/293 (44%), Gaps = 2/293 (0%)
Frame = +2
Query: 293 KIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGSQQCKQ 472
+++ FE+ + VYG GE +AG V + + +A+R+ G V +
Sbjct: 3 RVQLFEIRLSQGRVVYGPGEPLAGTVHLRLGAPLPFRAIRVTCMGSCGV--STKANDGAW 60
Query: 473 TLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWV 652
++ + +L L D + P ++ + F F LP TSF+G +G + + V
Sbjct: 61 VVEESYFNSSLSLADKGS--------LPAGEHNFPFQFLLP-ATAPTSFEGPFGKIVHQV 111
Query: 653 KAFLDRPS-QPTQETKKHFEVMDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 826
+A +D P + F ++ +++N+ PD+ P A KK S + G V ++A
Sbjct: 112 RASIDTPRFSKDHKCSLVFYILSPLNLNSIPDIEQPNVASTTKKFSYKLVKTGNVVLTAS 171
Query: 827 IDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHII 1006
D +G+ G + + AD EN + P A + + + + ++ V G +
Sbjct: 172 TDLRGYVVGQVLRLQADIENQSGKDTSPVVASLLQKVSYKAKRWIYDVRTIAEVEGTGVK 231
Query: 1007 SGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
+ A W+ + L + ++ GC+++ ++Y+L + + P + + LPL +
Sbjct: 232 AWRRAQWQEQILVPALPQSALPGCSLIHIDYYLQVSMKAP---EATVTLPLFV 281
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,723,099
Number of extensions: 1620530
Number of successful extensions: 4001
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3983
Number of HSP's successfully gapped: 8
Length of query: 622
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 515
Effective length of database: 12,403,707
Effective search space: 6387909105
Effective search space used: 6387909105
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000692
(1867 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038079.1| thioredoxin-interacting protein [Sus scrofa]. 752 0.0
Alignment gi|XP_001924225.3| PREDICTED: arrestin domain-containing protei... 301 6e-82
Alignment gi|XP_003361822.1| PREDICTED: arrestin domain-containing protei... 278 6e-75
Alignment gi|XP_003123831.2| PREDICTED: arrestin domain-containing protei... 273 2e-73
Alignment gi|XP_003123551.1| PREDICTED: arrestin domain-containing protei... 238 1e-62
Alignment gi|XP_003123552.1| PREDICTED: arrestin domain-containing protei... 235 7e-62
>ref|NP_001038079.1| thioredoxin-interacting protein [Sus scrofa].
Length = 391
Score = 752 bits (1942), Expect = 0.0
Identities = 369/391 (94%), Positives = 369/391 (94%)
Frame = +2
Query: 278 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 60
Query: 458 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 637
QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61 QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
Query: 638 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 817
VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121 VDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180
Query: 818 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 997
SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 998 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIXXXX 1177
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 1178 XXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 1357
WVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDIIPEDHRLESPTTPLLDDTDGSQD 360
Query: 1358 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 1450
SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ
Sbjct: 361 SPIFMYAPEFKFMPPPTYSEVDPCILNNNVQ 391
>ref|XP_001924225.3| PREDICTED: arrestin domain-containing protein 4 isoform 1 [Sus
scrofa].
Length = 401
Score = 301 bits (772), Expect = 6e-82
Identities = 160/390 (41%), Positives = 233/390 (59%), Gaps = 8/390 (2%)
Frame = +2
Query: 281 VMFKKIKSFEVVFNDPEK-VYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQGS 457
++ ++KS +VF D K Y GE+VAG V++E E ++A+R+ A G A W +
Sbjct: 1 MLLGRVKSLGLVFEDERKGCYSSGERVAGHVLLEAAEPVTLRALRLEAHGRATAAWGPSA 60
Query: 458 ----QQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKG 625
++YL L L + P GE +++++PG K+E+ F F+LP PL TSF G
Sbjct: 61 GAAAPAAASEVEYLNVR--LSLREPPAGEG-ILLLQPG-KHEFPFSFQLPSEPLVTSFTG 116
Query: 626 KYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDG 805
KYG + Y V+A L+RP P Q K+ +V+ +DVNTP L+ PV +EK V C F G
Sbjct: 117 KYGSIQYCVRAILERPRVPDQSVKRELQVISHIDVNTPALLTPVLKTQEKMVGCWFFTSG 176
Query: 806 RVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSS 985
VS+SA+I+RKG+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK + +++
Sbjct: 177 PVSLSAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRHMVAN 236
Query: 986 VRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI 1165
VRGNHI SG+ +W GK+L++ + PSIL C I+RV+Y L +Y+ +PG+KK++L+LPLVI
Sbjct: 237 VRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVI 296
Query: 1166 --XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH-RLESPTTPLLD 1336
W+ L +P+ PEAPP Y D++ E+ P P
Sbjct: 297 GTVPYNGFGSRNSSIASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHVPPYPQPP 356
Query: 1337 DTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
+ +G P+F EF+F PPP YSEVDP
Sbjct: 357 NCEGDSCCPMFACIQEFRFQPPPLYSEVDP 386
>ref|XP_003361822.1| PREDICTED: arrestin domain-containing protein 3-like [Sus scrofa].
Length = 408
Score = 278 bits (712), Expect = 6e-75
Identities = 152/394 (38%), Positives = 227/394 (57%), Gaps = 16/394 (4%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGT 613
+Q + ++Y ++D +L+ G N + ++EY F FELPQ PL T
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKD-ILIGHEREGFNTI----HSGRHEYAFSFELPQTPLAT 119
Query: 614 SFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMF 793
SF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK + C F
Sbjct: 120 SFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLCCWF 179
Query: 794 IPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQ 973
G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K + Q
Sbjct: 180 CTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEVKQ 239
Query: 974 KLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDL 1153
++++RG + SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ + L+L
Sbjct: 240 LVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFLNL 299
Query: 1154 PLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES-PTT 1324
PLVI W+ L++P+ PEAPP Y +++ E+ R +
Sbjct: 300 PLVIGTIPLHPFGSRTSSVSSQCSMNINWLGLSLPERPEAPPSYAEVVTEEQRRNNLAPV 359
Query: 1325 PLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
DD + + P+F Y EF+F+PPP YSE+DP
Sbjct: 360 SACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 393
>ref|XP_003123831.2| PREDICTED: arrestin domain-containing protein 3, partial [Sus
scrofa].
Length = 396
Score = 273 bits (699), Expect = 2e-73
Identities = 152/394 (38%), Positives = 225/394 (57%), Gaps = 19/394 (4%)
Frame = +2
Query: 293 KIKSFEVVF---NDPE-KVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG-- 454
K+KS + F ND VY G+ V+GRV +EV R+K+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 455 -------SQQCKQTLDYLRYEDTLL---LDDHPTGENEMVIMRPGNKYEYKFGFELPQGP 604
+Q + ++Y ++D L+ DD + E I ++EY F FELPQ P
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFNTIH--SGRHEYAFSFELPQTP 122
Query: 605 LGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVS 784
L TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK +
Sbjct: 123 LATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLC 182
Query: 785 CMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKV 964
C F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K
Sbjct: 183 CWFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKE 242
Query: 965 LTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVI 1144
+ Q ++++RG + SG +W GK L++ + PSIL C+I+RVEY L++YV +PG+ +
Sbjct: 243 VKQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLF 302
Query: 1145 LDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDHRLES- 1315
L+LPLVI W+ L++P+ PEAPP Y +++ E+ R +
Sbjct: 303 LNLPLVIGTIPLHPFGSRTSSVSSQCSMNINWLGLSLPERPEAPPSYAEVVTEEQRRNNL 362
Query: 1316 PTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSE 1417
DD + + P+F Y EF+F+PPP YSE
Sbjct: 363 APVSACDDFERALQGPLFAYIQEFRFLPPPLYSE 396
>ref|XP_003123551.1| PREDICTED: arrestin domain-containing protein 2 isoform 1 [Sus
scrofa].
Length = 411
Score = 238 bits (606), Expect = 1e-62
Identities = 141/403 (34%), Positives = 221/403 (54%), Gaps = 21/403 (5%)
Frame = +2
Query: 281 VMFKKIKSFEVVFNDP----EKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWM 448
++F K+K+F V + E V+ G+ V GRV++E+ R+ +++ A G A V W
Sbjct: 1 MLFDKVKAFMVQLDGASAGAEPVFSGGQAVVGRVLLELTGPARVGTLKLRARGRAHVHWT 60
Query: 449 QG---------SQQCKQTLDYLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQG 601
+ +Q + ++++ + TLL D TGE + P ++E+ F F+LP
Sbjct: 61 ESRSAGSSTAYTQSYSERVEFVNHRATLLAPD--TGE---ITTLPPGRHEFPFSFQLPP- 114
Query: 602 PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKV 781
L TSF+GK+G V Y +KA L RP P + T+K F V++ VD+NTP L+AP + +EK
Sbjct: 115 TLVTSFEGKHGSVRYCIKATLHRPWVPARRTRKVFTVIEPVDINTPALLAPQAGAREKIA 174
Query: 782 SCMFIPDGRVSVSARIDRKGFCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTK 961
+ G VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K
Sbjct: 175 RSWYSNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGTTRPVLPRAAVVQTQTFMARGARK 234
Query: 962 VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKV 1141
++S+ G + G A W+G++LR+ + PSIL C +L V+Y L + V +PGS K+
Sbjct: 235 QKRAVVASLSGEPVGPGRRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKL 294
Query: 1142 ILDLPLVI--XXXXXXXXXXXXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH---- 1303
+L+LPLVI W +P+ PEAPP Y +++ +D
Sbjct: 295 LLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWGLGVLPERPEAPPEYSEVVADDEMAAA 354
Query: 1304 --RLESPTTPLLDDTDGSQDSPIFMYAPEFKFMPPPTYSEVDP 1426
+E PLL + + S + P F Y EF++ PPP YSE DP
Sbjct: 355 AAAVEQSPFPLLQNPNMSPEGPFFAYIQEFRYRPPPLYSEEDP 397
>ref|XP_003123552.1| PREDICTED: arrestin domain-containing protein 2 isoform 2 [Sus
scrofa].
Length = 406
Score = 235 bits (599), Expect = 7e-62
Identities = 139/383 (36%), Positives = 207/383 (54%), Gaps = 16/383 (4%)
Frame = +2
Query: 326 PEKVYGCGEKVAGRVIVEVCEVTRIKAVRILACGVAKVLWMQG--------SQQCKQTLD 481
P Y GE++ GRV++E R++A+ + A G A W++G S
Sbjct: 17 PGGAYRGGERLCGRVLLEAAAPLRVRALEVAARGWAATHWLEGRSVGINAVSSDYAAAET 76
Query: 482 YLRYEDTLLLDDHPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVDYWVKAF 661
YLR LL D TGE + P ++E+ F F+LP L TSF+GK+G V Y +KA
Sbjct: 77 YLRRRQLLLRD---TGE---ITTLPPGRHEFPFSFQLPP-TLVTSFEGKHGSVRYCIKAT 129
Query: 662 LDRPSQPTQETKKHFEVMDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSVSARIDRKG 841
L RP P + T+K F V++ VD+NTP L+AP + +EK + G VS+SA+IDRKG
Sbjct: 130 LHRPWVPARRTRKVFTVIEPVDINTPALLAPQAGAREKIARSWYSNRGLVSLSAKIDRKG 189
Query: 842 FCEGDEINIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGNHIISGTCA 1021
+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+ G + G A
Sbjct: 190 YTPGEVIPVFAEIDNGTTRPVLPRAAVVQTQTFMARGARKQKRAVVASLSGEPVGPGRRA 249
Query: 1022 SWRGKSLRVQKIRPSILGCNILRVEYFLLIYVSVPGSKKVILDLPLVI--XXXXXXXXXX 1195
W+G++LR+ + PSIL C +L V+Y L + V +PGS K++L+LPLVI
Sbjct: 250 LWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGSSKLLLELPLVIGTIPLHPFGSRS 309
Query: 1196 XXXXXXXXXXXXWVDLNIPDTPEAPPCYMDIIPEDH------RLESPTTPLLDDTDGSQD 1357
W +P+ PEAPP Y +++ +D +E PLL + + S +
Sbjct: 310 SSVGSHASFLLDWGLGVLPERPEAPPEYSEVVADDEMAAAAAAVEQSPFPLLQNPNMSPE 369
Query: 1358 SPIFMYAPEFKFMPPPTYSEVDP 1426
P F Y EF++ PPP YSE DP
Sbjct: 370 GPFFAYIQEFRYRPPPLYSEEDP 392
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,230,870
Number of extensions: 1199603
Number of successful extensions: 3008
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2992
Number of HSP's successfully gapped: 6
Length of query: 622
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 517
Effective length of database: 8,729,747
Effective search space: 4513279199
Effective search space used: 4513279199
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000692
(1867 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1027 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1027 bits (518), Expect = 0.0
Identities = 525/526 (99%), Gaps = 1/526 (0%)
Strand = Plus / Plus
Query: 4 agctatcctttc-actcctctggcagatcgctgttagctttcccgccgagatccggagct 62
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991377 agctatcctttccactcctctggcagatcgctgttagctttcccgccgagatccggagct 108991436
Query: 63 ctcctccagctgttggaggaaagacaggaaagagcttatttttcttttgaaataccttgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991437 ctcctccagctgttggaggaaagacaggaaagagcttatttttcttttgaaataccttgg 108991496
Query: 123 cacaaccagcaagggaacatcttgtcgaacatttaatagagagttgaaaagtgaaataat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991497 cacaaccagcaagggaacatcttgtcgaacatttaatagagagttgaaaagtgaaataat 108991556
Query: 183 tttaattcattgcaaagggccctttgattcggggttttgtttttcactcctgccccctgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991557 tttaattcattgcaaagggccctttgattcggggttttgtttttcactcctgccccctgc 108991616
Query: 243 cccgtttctaactctcaagtcaaccgagcccaaacatggtgatgttcaagaagatcaagt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991617 cccgtttctaactctcaagtcaaccgagcccaaacatggtgatgttcaagaagatcaagt 108991676
Query: 303 cttttgaggtggtctttaacgaccccgaaaaggtgtacggctgtggggagaaggtggctg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991677 cttttgaggtggtctttaacgaccccgaaaaggtgtacggctgtggggagaaggtggctg 108991736
Query: 363 gccgggtgatagtggaggtgtgtgaagtcactcgaatcaaagctgtcaggatcctggctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991737 gccgggtgatagtggaggtgtgtgaagtcactcgaatcaaagctgtcaggatcctggctt 108991796
Query: 423 gtggagtggccaaagtcctgtggatgcagggatcccagcagtgcaaacagaccttggact 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991797 gtggagtggccaaagtcctgtggatgcagggatcccagcagtgcaaacagaccttggact 108991856
Query: 483 acctgcgctatgaagacactcttctcctggacgaccacccaacagg 528
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108991857 acctgcgctatgaagacactcttctcctggacgaccacccaacagg 108991902
Score = 769 bits (388), Expect = 0.0
Identities = 436/453 (96%), Gaps = 1/453 (0%)
Strand = Plus / Plus
Query: 1416 aggtggatccctgcatcctcaacaacaacgtgcagtgaacatgtggaaggaaagaagcag 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994108 aggtggatccctgcatcctcaacaacaacgtgcagtgaacatgtggaaggaaagaagcag 108994167
Query: 1476 ctatacctacttctttcttttcacctctcttcctggactgactttttaggagactcaaca 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994168 ctatacctacttctttcttttcacctctcttcctggactgactttttaggagactcaaca 108994227
Query: 1536 gtctctgcagtggggtacagatccaccccagcctctgactctccggtgtaggaggtgatc 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994228 gtctctgcagtggggtacagatccaccccagcctctgactctccggtgtaggaggtgatc 108994287
Query: 1596 atcaggcaatctcttgggccttaaagggtgcgcagtcgtcctcagccagtgagatgttgt 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994288 atcaggcaatctcttgggccttaaagggtgcgcagtcgtcctcagccagtgagatgttgt 108994347
Query: 1656 gacaagggnnnnnnngctggatgggtttaaaaacccagacaaattttagcccattccatt 1715
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 108994348 gacaagggtttttttgctggatgggtttaaaaacacagacaaatttaggcccattccatt 108994407
Query: 1716 ttctcagatcttttttgagaattgaggcattttaaataaggggtagaaatggcctcctgg 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108994408 ttctcagatcttttttgagaattgaggcattttaaataaggggtagaaatggcctcctgg 108994467
Query: 1776 tgtggtc-tcccaaggttttatggaggggatttcagactgttataacaataaatcttgaa 1834
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 108994468 tgtggtcttcccaaggttttatggaggggatttcagactgttataacaatagatcttgaa 108994527
Query: 1835 cccctgccctgtggaaaaaacccaattttgcaa 1867
|| ||||| |||||| |||| ||||||| ||||
Sbjct: 108994528 cctctgccatgtggagaaaagccaatttagcaa 108994560
Score = 513 bits (259), Expect = e-142
Identities = 259/259 (100%)
Strand = Plus / Plus
Query: 850 aggtgatgagattaacatccatgctgattttgagaatacatgttcccgcattgtggtgcc 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993197 aggtgatgagattaacatccatgctgattttgagaatacatgttcccgcattgtggtgcc 108993256
Query: 910 caaagctgccattgtagcccgccacacttaccttgccaatggccaaaccaaagtactgac 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993257 caaagctgccattgtagcccgccacacttaccttgccaatggccaaaccaaagtactgac 108993316
Query: 970 gcagaagttgtcatcggtcagaggcaatcacattatctcaggaacctgtgcatcatggcg 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993317 gcagaagttgtcatcggtcagaggcaatcacattatctcaggaacctgtgcatcatggcg 108993376
Query: 1030 tggcaagagccttcgggtgcagaagatcaggccttctatcttgggctgcaacatccttcg 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993377 tggcaagagccttcgggtgcagaagatcaggccttctatcttgggctgcaacatccttcg 108993436
Query: 1090 agttgaatacttcttactg 1108
|||||||||||||||||||
Sbjct: 108993437 agttgaatacttcttactg 108993455
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 1264 agctcctccatgctatatggatatcattcctgaagatcaccgattggagagccccaccac 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993824 agctcctccatgctatatggatatcattcctgaagatcaccgattggagagccccaccac 108993883
Query: 1324 tcctctgctagatgacacagatggctctcaagacagccctatctttatgtatgctcctga 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993884 tcctctgctagatgacacagatggctctcaagacagccctatctttatgtatgctcctga 108993943
Query: 1384 gtttaagttcatgccaccacctacttacagtgaggt 1419
||||||||||||||||||||||||||||||||||||
Sbjct: 108993944 gtttaagttcatgccaccacctacttacagtgaggt 108993979
Score = 305 bits (154), Expect = 5e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 1108 gatctacgttagtgtccctggctccaagaaggtcattcttgacctgccgctggtaattgg 1167
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 108993556 gatctacgttagtgtccctggctccaagaaggtcattcttgacctgcccctggtaattgg 108993615
Query: 1168 cagcaggtcaggcctcagcagccggacgtccagcatggccagccgaaccagctccgagat 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993616 cagcaggtcaggcctcagcagccggacgtccagcatggccagccgaaccagctccgagat 108993675
Query: 1228 gagttgggtagatctaaacatccctgatacccccgaag 1265
||||||||||||||||||||||||||||||||||||||
Sbjct: 108993676 gagttgggtagatctaaacatccctgatacccccgaag 108993713
Score = 256 bits (129), Expect = 4e-65
Identities = 143/150 (95%)
Strand = Plus / Plus
Query: 600 ggcctctgggaacatctttcaaaggaaaatatgggtgtgtagactactgggtgaaggctt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108992609 ggcctctgggaacatctttcaaaggaaaatatgggtgtgtagactactgggtgaaggctt 108992668
Query: 660 ttcttgatcgcccaagccagccaactcaagagacnnnnnnncacttcgaagtgatggatc 719
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 108992669 ttcttgatcgcccaagccagccaactcaagagacaaaaaaacacttcgaagtgatggatc 108992728
Query: 720 tagtggatgtcaatacccctgatttaatgg 749
||||||||||||||||||||||||||||||
Sbjct: 108992729 tagtggatgtcaatacccctgatttaatgg 108992758
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 748 ggcacctgtgtctgctaaaaaggagaagaaagtttcctgcatgttcattcctgatggccg 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108992964 ggcacctgtgtctgctaaaaaggagaagaaagtttcctgcatgttcattcctgatggccg 108993023
Query: 808 ggtgtctgtctctgctcgaatcgacagaaaagggttctgtgaaggt 853
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108993024 ggtgtctgtctctgctcgaatcgacagaaaagggttctgtgaaggt 108993069
Score = 153 bits (77), Expect = 4e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 525 caggggagaatgagatggtgatcatgagacctggaaacaaatatgaatacaagtttggct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108992412 caggggagaatgagatggtgatcatgagacctggaaacaaatatgaatacaagtttggct 108992471
Query: 585 ttgagcttcctcagggg 601
|||||||||||||||||
Sbjct: 108992472 ttgagcttcctcagggg 108992488
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,612,423
Number of extensions: 439
Number of successful extensions: 439
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 8
Length of query: 1867
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1845
Effective length of database: 2,808,408,574
Effective search space: 5181513819030
Effective search space used: 5181513819030
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)