Animal-Genome cDNA 20110601C-000709


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000709
         (1080 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002692859.1| PREDICTED: hypothetical protein [Bos taurus].     350   9e-97
Alignment   gi|XP_871425.1| PREDICTED: hypothetical protein [Bos taurus].        350   9e-97

>ref|XP_002692859.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 207

 Score =  350 bits (899), Expect = 9e-97
 Identities = 162/207 (78%), Positives = 173/207 (83%)
 Frame = +3

Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
           MA+DLDELLDEVESKFC  DPLRLG VERPRG GGG   +D++RAE KE LR  ETF+KE
Sbjct: 1   MAEDLDELLDEVESKFCRPDPLRLGTVERPRGGGGGFFGHDQNRAEAKENLRSAETFEKE 60

Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
           DDLDSLINEIFEEP+FDKKHFKLKS SSGN SVRA  QGLGKSCSPVY+GGS VPCGIGT
Sbjct: 61  DDLDSLINEIFEEPHFDKKHFKLKSKSSGNTSVRASIQGLGKSCSPVYIGGSTVPCGIGT 120

Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
           N S RACDHLRC ACDFW+ SYDD+RWD SCDYLFFRNNMPEFH          GTRAYA
Sbjct: 121 NASPRACDHLRCTACDFWVESYDDYRWDKSCDYLFFRNNMPEFHKLKTKLVKKKGTRAYA 180

Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
           CQCSW+ +E LTDLQ DHQLRWVCGKH
Sbjct: 181 CQCSWKAVEELTDLQTDHQLRWVCGKH 207


>ref|XP_871425.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 207

 Score =  350 bits (899), Expect = 9e-97
 Identities = 162/207 (78%), Positives = 173/207 (83%)
 Frame = +3

Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
           MA+DLDELLDEVESKFC  DPLRLG VERPRG GGG   +D++RAE KE LR  ETF+KE
Sbjct: 1   MAEDLDELLDEVESKFCRPDPLRLGTVERPRGGGGGFFGHDQNRAEAKENLRSAETFEKE 60

Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
           DDLDSLINEIFEEP+FDKKHFKLKS SSGN SVRA  QGLGKSCSPVY+GGS VPCGIGT
Sbjct: 61  DDLDSLINEIFEEPHFDKKHFKLKSKSSGNTSVRASIQGLGKSCSPVYIGGSTVPCGIGT 120

Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
           N S RACDHLRC ACDFW+ SYDD+RWD SCDYLFFRNNMPEFH          GTRAYA
Sbjct: 121 NASPRACDHLRCTACDFWVESYDDYRWDKSCDYLFFRNNMPEFHKLKTKLVKKKGTRAYA 180

Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
           CQCSW+ +E LTDLQ DHQLRWVCGKH
Sbjct: 181 CQCSWKAVEELTDLQTDHQLRWVCGKH 207


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,861,609
Number of extensions: 859332
Number of successful extensions: 2667
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2663
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000709
         (1080 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854621.1| PREDICTED: hypothetical protein XP_849528 [Cani...   255   6e-68

>ref|XP_854621.1| PREDICTED: hypothetical protein XP_849528 [Canis familiaris].
          Length = 336

 Score =  255 bits (651), Expect = 6e-68
 Identities = 125/175 (71%), Positives = 132/175 (75%)
 Frame = +3

Query: 240 CGGGVLSNDRSRAEEKETLRPTETFKKEDDLDSLINEIFEEPNFDKKHFKLKSTSSGNAS 419
           C  G  S   SR+  +  L   ETF+KEDDLDSLINEIFEEPN DKK  KLKS SSGN S
Sbjct: 164 CSAGKHSAAGSRSSGQ--LGSAETFEKEDDLDSLINEIFEEPNLDKKPVKLKSKSSGNPS 221

Query: 420 VRAPTQGLGKSCSPVYLGGSAVPCGIGTNTSQRACDHLRCIACDFWIVSYDDHRWDTSCD 599
           VRA TQ LGKSCSPVYLGGS  PCGIGTNTSQRACD LRC+ACDF +VSYDD+ WD SCD
Sbjct: 222 VRASTQSLGKSCSPVYLGGSTAPCGIGTNTSQRACDRLRCVACDFRVVSYDDYMWDHSCD 281

Query: 600 YLFFRNNMPEFHXXXXXXXXXXGTRAYACQCSWRTIEALTDLQNDHQLRWVCGKH 764
           YLFFRNNMPEF           G RAYACQCSWRT EALT LQ D QLRWVCG+H
Sbjct: 282 YLFFRNNMPEFQKLRTKLVKKPGARAYACQCSWRTAEALTALQADPQLRWVCGRH 336


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,352,488
Number of extensions: 885031
Number of successful extensions: 2894
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2880
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000709
         (1080 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_808880.1| hypothetical protein LOC157657 [Homo sapiens].       340   1e-93

>ref|NP_808880.1| hypothetical protein LOC157657 [Homo sapiens].
          Length = 207

 Score =  340 bits (872), Expect = 1e-93
 Identities = 160/207 (77%), Positives = 174/207 (84%)
 Frame = +3

Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
           MA+DLDELLDEVESKFC  D LR G+VE+P+GCGGG  S+DR++A+ KETLR TETFKKE
Sbjct: 1   MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE 60

Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
           DDLDSLINEI EEPN DKK  KLKS SSGN SVRA  +GLGKSCSPVYLGGS++PCGIGT
Sbjct: 61  DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT 120

Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
           N S RACDHLRCIACDF +VSYDD+ WD SCDYLFFRNNMPEFH          GTRAYA
Sbjct: 121 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA 180

Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
           CQCSWRTIE +TDLQ DHQLRWVCGKH
Sbjct: 181 CQCSWRTIEEVTDLQTDHQLRWVCGKH 207


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,812,491
Number of extensions: 874030
Number of successful extensions: 2640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2621
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000709
         (1080 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080281.3| hypothetical protein LOC67157 [Mus musculus].        327   1e-89

>ref|NP_080281.3| hypothetical protein LOC67157 [Mus musculus].
          Length = 209

 Score =  327 bits (837), Expect = 1e-89
 Identities = 158/209 (75%), Positives = 171/209 (81%), Gaps = 2/209 (0%)
 Frame = +3

Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVL-SNDRSRAEEKETLRPTETFKK 320
           MAKDLDELLDEVE+KFC  DPLRL + ERP+G GGG   S DR+ A+EKETLR TETFKK
Sbjct: 1   MAKDLDELLDEVETKFCRLDPLRLDLGERPKGDGGGGSHSGDRNGAQEKETLRSTETFKK 60

Query: 321 EDDLDSLINEIFEEPNFDKKHF-KLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGI 497
           EDDLDSLINEIFEEP+FD+K F K KS SS N  VRAP QG+ KSCSPVYL GSA+PCGI
Sbjct: 61  EDDLDSLINEIFEEPDFDRKSFQKFKSKSSSNTCVRAPMQGVSKSCSPVYLSGSAIPCGI 120

Query: 498 GTNTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRA 677
           GTNTSQRACD LRC+ACDF IVSY+D+ WD SCDYLFFRNNMPEFH          G RA
Sbjct: 121 GTNTSQRACDRLRCVACDFRIVSYNDYMWDKSCDYLFFRNNMPEFHKLKTKLIEKKGARA 180

Query: 678 YACQCSWRTIEALTDLQNDHQLRWVCGKH 764
           YACQCSWRT+E LTDLQ DHQLRWVCGKH
Sbjct: 181 YACQCSWRTVEELTDLQTDHQLRWVCGKH 209


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,675,740
Number of extensions: 749222
Number of successful extensions: 2333
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2326
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000709
         (1080 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001924316.1| PREDICTED: uncharacterized protein C8orf37 h...   417   e-117

>ref|XP_001924316.1| PREDICTED: uncharacterized protein C8orf37 homolog [Sus scrofa].
          Length = 207

 Score =  417 bits (1072), Expect = e-117
 Identities = 196/207 (94%), Positives = 197/207 (95%)
 Frame = +3

Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
           MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE
Sbjct: 1   MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 60

Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
           DDLDSLINEIFE+PNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT
Sbjct: 61  DDLDSLINEIFEKPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 120

Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
           NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFH          GTRAYA
Sbjct: 121 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHKLKTKLVKKKGTRAYA 180

Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
           CQCSWRTIEALTDLQNDHQLRWVCGKH
Sbjct: 181 CQCSWRTIEALTDLQNDHQLRWVCGKH 207


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,366,025
Number of extensions: 545878
Number of successful extensions: 1739
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1730
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000709
         (1080 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         922   0.0  

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  922 bits (465), Expect = 0.0
 Identities = 468/469 (99%)
 Strand = Plus / Minus

                                                                            
Query: 612      aggaacaatatgccagaattccacaaattgaaaacaaagttggtaaagaagaaaggaaca 671
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709555 aggaacaatatgccagaattccacaaattgaaaacaaagttggtaaagaagaaaggaaca 44709496

                                                                            
Query: 672      cgggcctatgcctgccagtgcagctggagaaccattgaagcactgactgaccttcagaat 731
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709495 cgggcctatgcctgccagtgcagctggagaaccattgaagcactgactgaccttcagaat 44709436

                                                                            
Query: 732      gaccatcagcttcgctgggtttgcggtaaacactaaggatgcaggctttccacattcaga 791
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709435 gaccatcagcttcgctgggtttgcggtaaacactaaggatgcaggctttccacattcaga 44709376

                                                                            
Query: 792      cagatgcctccatgagagcagtctcaggtcatggtcacaacatttaggtaaagggacaga 851
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709375 cagatgcctccatgagagcagtctcaggtcatggtcacaacatttaggtaaagggacaga 44709316

                                                                            
Query: 852      acaatatcatggaaaagagaggaaatttcctttcgtggctgcgcacatttttgaagacga 911
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709315 acaatatcatggaaaagagaggaaatttcctttcgtggctgcgcacatttttgaagacga 44709256

                                                                            
Query: 912      aatggacttgagaagataatgtgctttaacagtttagaattattcctttttgctagatgg 971
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709255 aatggacttgagaagataatgtgctttaacagtttagaattattcctttttgctagatgg 44709196

                                                                            
Query: 972      acatttcacttaataagtaaagtgttgagttatccaaatacttctttgctagcctctctc 1031
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709195 acatttcacttaataagtaaagtgttgagttatccaaatacttctttgctagcctctctc 44709136

                                                                 
Query: 1032     ctggtaaatagcagtttaattgtgtagtttcatataaatatgaactata 1080
                ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709135 ctgttaaatagcagtttaattgtgtagtttcatataaatatgaactata 44709087



 Score =  341 bits (172), Expect = 5e-91
 Identities = 172/172 (100%)
 Strand = Plus / Minus

                                                                            
Query: 127      ggctgtgacaattcaagatggcgaaggacctggacgagctcttggatgaggtcgagtcca 186
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44728097 ggctgtgacaattcaagatggcgaaggacctggacgagctcttggatgaggtcgagtcca 44728038

                                                                            
Query: 187      agttctgcggatcagaccccctgagactgggcattgtcgagcggcccagaggctgcggcg 246
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44728037 agttctgcggatcagaccccctgagactgggcattgtcgagcggcccagaggctgcggcg 44727978

                                                                    
Query: 247      gcggtgtcctcagcaacgaccggagccgagccgaggagaaagagactctcag 298
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44727977 gcggtgtcctcagcaacgaccggagccgagccgaggagaaagagactctcag 44727926



 Score =  196 bits (99), Expect = 2e-47
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                            
Query: 516      agagcgtgtgaccatctgcgttgtatagcatgtgatttctggatagtaagctacgatgac 575
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44712210 agagcgtgtgaccatctgcgttgtatagcatgtgatttctggatagtaagctacgatgac 44712151

                                                       
Query: 576      cataggtgggacacatcatgcgattacctgtttttcagg 614
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 44712150 cataggtgggacacatcatgcgattacctgtttttcagg 44712112



 Score =  174 bits (88), Expect = 6e-41
 Identities = 91/92 (98%)
 Strand = Plus / Minus

                                                                            
Query: 295      tcagaccaacagaaacatttaaaaaagaagatgatcttgacagtcttattaatgaaatat 354
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44723377 tcagaccaacagaaacatttaaaaaagaagatgatcttgacagtcttattaatgaaatat 44723318

                                                
Query: 355      ttgaagagcccaactttgacaaaaaacacttt 386
                ||||| ||||||||||||||||||||||||||
Sbjct: 44723317 ttgaaaagcccaactttgacaaaaaacacttt 44723286



 Score =  135 bits (68), Expect = 6e-29
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                            
Query: 450      agttgcagcccagtgtaccttggtggaagtgctgttccttgtgggattgggacaaatact 509
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44721078 agttgcagcccagtgtaccttggtggaagtgctgttccttgtgggattgggacaaatact 44721019

                        
Query: 510      tcacagag 517
                ||||||||
Sbjct: 44721018 tcacagag 44721011



 Score =  129 bits (65), Expect = 3e-27
 Identities = 65/65 (100%)
 Strand = Plus / Minus

                                                                            
Query: 387      aaattaaagtctacatcttcaggtaacgcatctgtcagagctcccactcaaggccttggt 446
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44721671 aaattaaagtctacatcttcaggtaacgcatctgtcagagctcccactcaaggccttggt 44721612

                     
Query: 447      aaaag 451
                |||||
Sbjct: 44721611 aaaag 44721607


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,024,891
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 6
Length of query: 1080
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1059
Effective length of database: 2,808,413,156
Effective search space: 2974109532204
Effective search space used: 2974109532204
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)