Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000709
(1080 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692859.1| PREDICTED: hypothetical protein [Bos taurus]. 350 9e-97
Alignment gi|XP_871425.1| PREDICTED: hypothetical protein [Bos taurus]. 350 9e-97
>ref|XP_002692859.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 207
Score = 350 bits (899), Expect = 9e-97
Identities = 162/207 (78%), Positives = 173/207 (83%)
Frame = +3
Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
MA+DLDELLDEVESKFC DPLRLG VERPRG GGG +D++RAE KE LR ETF+KE
Sbjct: 1 MAEDLDELLDEVESKFCRPDPLRLGTVERPRGGGGGFFGHDQNRAEAKENLRSAETFEKE 60
Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
DDLDSLINEIFEEP+FDKKHFKLKS SSGN SVRA QGLGKSCSPVY+GGS VPCGIGT
Sbjct: 61 DDLDSLINEIFEEPHFDKKHFKLKSKSSGNTSVRASIQGLGKSCSPVYIGGSTVPCGIGT 120
Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
N S RACDHLRC ACDFW+ SYDD+RWD SCDYLFFRNNMPEFH GTRAYA
Sbjct: 121 NASPRACDHLRCTACDFWVESYDDYRWDKSCDYLFFRNNMPEFHKLKTKLVKKKGTRAYA 180
Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
CQCSW+ +E LTDLQ DHQLRWVCGKH
Sbjct: 181 CQCSWKAVEELTDLQTDHQLRWVCGKH 207
>ref|XP_871425.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 207
Score = 350 bits (899), Expect = 9e-97
Identities = 162/207 (78%), Positives = 173/207 (83%)
Frame = +3
Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
MA+DLDELLDEVESKFC DPLRLG VERPRG GGG +D++RAE KE LR ETF+KE
Sbjct: 1 MAEDLDELLDEVESKFCRPDPLRLGTVERPRGGGGGFFGHDQNRAEAKENLRSAETFEKE 60
Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
DDLDSLINEIFEEP+FDKKHFKLKS SSGN SVRA QGLGKSCSPVY+GGS VPCGIGT
Sbjct: 61 DDLDSLINEIFEEPHFDKKHFKLKSKSSGNTSVRASIQGLGKSCSPVYIGGSTVPCGIGT 120
Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
N S RACDHLRC ACDFW+ SYDD+RWD SCDYLFFRNNMPEFH GTRAYA
Sbjct: 121 NASPRACDHLRCTACDFWVESYDDYRWDKSCDYLFFRNNMPEFHKLKTKLVKKKGTRAYA 180
Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
CQCSW+ +E LTDLQ DHQLRWVCGKH
Sbjct: 181 CQCSWKAVEELTDLQTDHQLRWVCGKH 207
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,861,609
Number of extensions: 859332
Number of successful extensions: 2667
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2663
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000709
(1080 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854621.1| PREDICTED: hypothetical protein XP_849528 [Cani... 255 6e-68
>ref|XP_854621.1| PREDICTED: hypothetical protein XP_849528 [Canis familiaris].
Length = 336
Score = 255 bits (651), Expect = 6e-68
Identities = 125/175 (71%), Positives = 132/175 (75%)
Frame = +3
Query: 240 CGGGVLSNDRSRAEEKETLRPTETFKKEDDLDSLINEIFEEPNFDKKHFKLKSTSSGNAS 419
C G S SR+ + L ETF+KEDDLDSLINEIFEEPN DKK KLKS SSGN S
Sbjct: 164 CSAGKHSAAGSRSSGQ--LGSAETFEKEDDLDSLINEIFEEPNLDKKPVKLKSKSSGNPS 221
Query: 420 VRAPTQGLGKSCSPVYLGGSAVPCGIGTNTSQRACDHLRCIACDFWIVSYDDHRWDTSCD 599
VRA TQ LGKSCSPVYLGGS PCGIGTNTSQRACD LRC+ACDF +VSYDD+ WD SCD
Sbjct: 222 VRASTQSLGKSCSPVYLGGSTAPCGIGTNTSQRACDRLRCVACDFRVVSYDDYMWDHSCD 281
Query: 600 YLFFRNNMPEFHXXXXXXXXXXGTRAYACQCSWRTIEALTDLQNDHQLRWVCGKH 764
YLFFRNNMPEF G RAYACQCSWRT EALT LQ D QLRWVCG+H
Sbjct: 282 YLFFRNNMPEFQKLRTKLVKKPGARAYACQCSWRTAEALTALQADPQLRWVCGRH 336
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,352,488
Number of extensions: 885031
Number of successful extensions: 2894
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2880
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000709
(1080 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808880.1| hypothetical protein LOC157657 [Homo sapiens]. 340 1e-93
>ref|NP_808880.1| hypothetical protein LOC157657 [Homo sapiens].
Length = 207
Score = 340 bits (872), Expect = 1e-93
Identities = 160/207 (77%), Positives = 174/207 (84%)
Frame = +3
Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
MA+DLDELLDEVESKFC D LR G+VE+P+GCGGG S+DR++A+ KETLR TETFKKE
Sbjct: 1 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE 60
Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
DDLDSLINEI EEPN DKK KLKS SSGN SVRA +GLGKSCSPVYLGGS++PCGIGT
Sbjct: 61 DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT 120
Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
N S RACDHLRCIACDF +VSYDD+ WD SCDYLFFRNNMPEFH GTRAYA
Sbjct: 121 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA 180
Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
CQCSWRTIE +TDLQ DHQLRWVCGKH
Sbjct: 181 CQCSWRTIEEVTDLQTDHQLRWVCGKH 207
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,812,491
Number of extensions: 874030
Number of successful extensions: 2640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2621
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000709
(1080 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080281.3| hypothetical protein LOC67157 [Mus musculus]. 327 1e-89
>ref|NP_080281.3| hypothetical protein LOC67157 [Mus musculus].
Length = 209
Score = 327 bits (837), Expect = 1e-89
Identities = 158/209 (75%), Positives = 171/209 (81%), Gaps = 2/209 (0%)
Frame = +3
Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVL-SNDRSRAEEKETLRPTETFKK 320
MAKDLDELLDEVE+KFC DPLRL + ERP+G GGG S DR+ A+EKETLR TETFKK
Sbjct: 1 MAKDLDELLDEVETKFCRLDPLRLDLGERPKGDGGGGSHSGDRNGAQEKETLRSTETFKK 60
Query: 321 EDDLDSLINEIFEEPNFDKKHF-KLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGI 497
EDDLDSLINEIFEEP+FD+K F K KS SS N VRAP QG+ KSCSPVYL GSA+PCGI
Sbjct: 61 EDDLDSLINEIFEEPDFDRKSFQKFKSKSSSNTCVRAPMQGVSKSCSPVYLSGSAIPCGI 120
Query: 498 GTNTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRA 677
GTNTSQRACD LRC+ACDF IVSY+D+ WD SCDYLFFRNNMPEFH G RA
Sbjct: 121 GTNTSQRACDRLRCVACDFRIVSYNDYMWDKSCDYLFFRNNMPEFHKLKTKLIEKKGARA 180
Query: 678 YACQCSWRTIEALTDLQNDHQLRWVCGKH 764
YACQCSWRT+E LTDLQ DHQLRWVCGKH
Sbjct: 181 YACQCSWRTVEELTDLQTDHQLRWVCGKH 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,675,740
Number of extensions: 749222
Number of successful extensions: 2333
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2326
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000709
(1080 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924316.1| PREDICTED: uncharacterized protein C8orf37 h... 417 e-117
>ref|XP_001924316.1| PREDICTED: uncharacterized protein C8orf37 homolog [Sus scrofa].
Length = 207
Score = 417 bits (1072), Expect = e-117
Identities = 196/207 (94%), Positives = 197/207 (95%)
Frame = +3
Query: 144 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 323
MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE
Sbjct: 1 MAKDLDELLDEVESKFCGSDPLRLGIVERPRGCGGGVLSNDRSRAEEKETLRPTETFKKE 60
Query: 324 DDLDSLINEIFEEPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 503
DDLDSLINEIFE+PNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT
Sbjct: 61 DDLDSLINEIFEKPNFDKKHFKLKSTSSGNASVRAPTQGLGKSCSPVYLGGSAVPCGIGT 120
Query: 504 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHXXXXXXXXXXGTRAYA 683
NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFH GTRAYA
Sbjct: 121 NTSQRACDHLRCIACDFWIVSYDDHRWDTSCDYLFFRNNMPEFHKLKTKLVKKKGTRAYA 180
Query: 684 CQCSWRTIEALTDLQNDHQLRWVCGKH 764
CQCSWRTIEALTDLQNDHQLRWVCGKH
Sbjct: 181 CQCSWRTIEALTDLQNDHQLRWVCGKH 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,366,025
Number of extensions: 545878
Number of successful extensions: 1739
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1730
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000709
(1080 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 922 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 922 bits (465), Expect = 0.0
Identities = 468/469 (99%)
Strand = Plus / Minus
Query: 612 aggaacaatatgccagaattccacaaattgaaaacaaagttggtaaagaagaaaggaaca 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709555 aggaacaatatgccagaattccacaaattgaaaacaaagttggtaaagaagaaaggaaca 44709496
Query: 672 cgggcctatgcctgccagtgcagctggagaaccattgaagcactgactgaccttcagaat 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709495 cgggcctatgcctgccagtgcagctggagaaccattgaagcactgactgaccttcagaat 44709436
Query: 732 gaccatcagcttcgctgggtttgcggtaaacactaaggatgcaggctttccacattcaga 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709435 gaccatcagcttcgctgggtttgcggtaaacactaaggatgcaggctttccacattcaga 44709376
Query: 792 cagatgcctccatgagagcagtctcaggtcatggtcacaacatttaggtaaagggacaga 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709375 cagatgcctccatgagagcagtctcaggtcatggtcacaacatttaggtaaagggacaga 44709316
Query: 852 acaatatcatggaaaagagaggaaatttcctttcgtggctgcgcacatttttgaagacga 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709315 acaatatcatggaaaagagaggaaatttcctttcgtggctgcgcacatttttgaagacga 44709256
Query: 912 aatggacttgagaagataatgtgctttaacagtttagaattattcctttttgctagatgg 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709255 aatggacttgagaagataatgtgctttaacagtttagaattattcctttttgctagatgg 44709196
Query: 972 acatttcacttaataagtaaagtgttgagttatccaaatacttctttgctagcctctctc 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709195 acatttcacttaataagtaaagtgttgagttatccaaatacttctttgctagcctctctc 44709136
Query: 1032 ctggtaaatagcagtttaattgtgtagtttcatataaatatgaactata 1080
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44709135 ctgttaaatagcagtttaattgtgtagtttcatataaatatgaactata 44709087
Score = 341 bits (172), Expect = 5e-91
Identities = 172/172 (100%)
Strand = Plus / Minus
Query: 127 ggctgtgacaattcaagatggcgaaggacctggacgagctcttggatgaggtcgagtcca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44728097 ggctgtgacaattcaagatggcgaaggacctggacgagctcttggatgaggtcgagtcca 44728038
Query: 187 agttctgcggatcagaccccctgagactgggcattgtcgagcggcccagaggctgcggcg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44728037 agttctgcggatcagaccccctgagactgggcattgtcgagcggcccagaggctgcggcg 44727978
Query: 247 gcggtgtcctcagcaacgaccggagccgagccgaggagaaagagactctcag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44727977 gcggtgtcctcagcaacgaccggagccgagccgaggagaaagagactctcag 44727926
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 516 agagcgtgtgaccatctgcgttgtatagcatgtgatttctggatagtaagctacgatgac 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44712210 agagcgtgtgaccatctgcgttgtatagcatgtgatttctggatagtaagctacgatgac 44712151
Query: 576 cataggtgggacacatcatgcgattacctgtttttcagg 614
|||||||||||||||||||||||||||||||||||||||
Sbjct: 44712150 cataggtgggacacatcatgcgattacctgtttttcagg 44712112
Score = 174 bits (88), Expect = 6e-41
Identities = 91/92 (98%)
Strand = Plus / Minus
Query: 295 tcagaccaacagaaacatttaaaaaagaagatgatcttgacagtcttattaatgaaatat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44723377 tcagaccaacagaaacatttaaaaaagaagatgatcttgacagtcttattaatgaaatat 44723318
Query: 355 ttgaagagcccaactttgacaaaaaacacttt 386
||||| ||||||||||||||||||||||||||
Sbjct: 44723317 ttgaaaagcccaactttgacaaaaaacacttt 44723286
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 450 agttgcagcccagtgtaccttggtggaagtgctgttccttgtgggattgggacaaatact 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44721078 agttgcagcccagtgtaccttggtggaagtgctgttccttgtgggattgggacaaatact 44721019
Query: 510 tcacagag 517
||||||||
Sbjct: 44721018 tcacagag 44721011
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 387 aaattaaagtctacatcttcaggtaacgcatctgtcagagctcccactcaaggccttggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44721671 aaattaaagtctacatcttcaggtaacgcatctgtcagagctcccactcaaggccttggt 44721612
Query: 447 aaaag 451
|||||
Sbjct: 44721611 aaaag 44721607
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,024,891
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 6
Length of query: 1080
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1059
Effective length of database: 2,808,413,156
Effective search space: 2974109532204
Effective search space used: 2974109532204
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)