Animal-Genome cDNA 20110601C-000721


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000721
         (1230 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776343.1| epididymal secretory protein E1 precursor [Bos ...   231   1e-60

>ref|NP_776343.1| epididymal secretory protein E1 precursor [Bos taurus].
          Length = 149

 Score =  231 bits (589), Expect = 1e-60
 Identities = 101/130 (77%), Positives = 120/130 (92%)
 Frame = +1

Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
           EPV F+DCGS VGVIKEVNV+PCPTQPC+LH+GQSYSVNVTFTSNTQS+ SKAVVHGIVM
Sbjct: 20  EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVM 79

Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
           G+P+PFPIP+ DGCKSGI CPI+KD+TY+Y+NKLPVK EYPSIK+VVEW+L DD +Q  F
Sbjct: 80  GIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFF 139

Query: 691 CWQIPVQIES 720
           CWQIP+++E+
Sbjct: 140 CWQIPIEVEA 149


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,195,066
Number of extensions: 1433998
Number of successful extensions: 5938
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5898
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000721
         (1230 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_855001.1| PREDICTED: similar to Epididymal secretory prot...   230   2e-60
Alignment   gi|NP_001003242.1| epididymal secretory protein E1 precursor [C...   228   7e-60

>ref|XP_855001.1| PREDICTED: similar to Epididymal secretory protein E1 precursor
           (Niemann-Pick disease type C2 protein) (hE1) [Canis
           familiaris].
          Length = 149

 Score =  230 bits (587), Expect = 2e-60
 Identities = 106/129 (82%), Positives = 117/129 (90%)
 Frame = +1

Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
           EPVHF+D GS VGVIKE+NVNPCPTQPC+LHKGQSYSVNVTFTSN  S+ SKAVVHGIV+
Sbjct: 20  EPVHFKDGGSAVGVIKELNVNPCPTQPCKLHKGQSYSVNVTFTSNIPSQSSKAVVHGIVL 79

Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
           GV +PFPIP+ DGCKSGINCPIQKD+TYSYLNKLPVK EYPSIKLVV+W L  DN+Q LF
Sbjct: 80  GVAVPFPIPEADGCKSGINCPIQKDKTYSYLNKLPVKNEYPSIKLVVQWMLLGDNNQHLF 139

Query: 691 CWQIPVQIE 717
           CW+IPVQIE
Sbjct: 140 CWEIPVQIE 148


>ref|NP_001003242.1| epididymal secretory protein E1 precursor [Canis lupus familiaris].
          Length = 149

 Score =  228 bits (582), Expect = 7e-60
 Identities = 104/127 (81%), Positives = 115/127 (90%)
 Frame = +1

Query: 337 VHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVMGV 516
           VHF+DCGS VGVIKE+NVNPCP QPC+LHKGQSYSVNVTFTSN  S+ SKAVVHGIV+GV
Sbjct: 22  VHFKDCGSAVGVIKELNVNPCPAQPCKLHKGQSYSVNVTFTSNIPSQSSKAVVHGIVLGV 81

Query: 517 PIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLFCW 696
            +PFPIP+ DGCKSGINCPIQKD+TYSYLNKLPVK EYPSIKLVV+W L  DN+Q LFCW
Sbjct: 82  AVPFPIPEADGCKSGINCPIQKDKTYSYLNKLPVKNEYPSIKLVVQWMLLGDNNQHLFCW 141

Query: 697 QIPVQIE 717
           +IPVQIE
Sbjct: 142 EIPVQIE 148


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,483,482
Number of extensions: 1490430
Number of successful extensions: 6341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6327
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000721
         (1230 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006423.1| epididymal secretory protein E1 precursor [Homo...   241   1e-63

>ref|NP_006423.1| epididymal secretory protein E1 precursor [Homo sapiens].
          Length = 151

 Score =  241 bits (615), Expect = 1e-63
 Identities = 111/130 (85%), Positives = 121/130 (93%)
 Frame = +1

Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
           EPV F+DCGS  GVIKEVNV+PCPTQPCQL KGQSYSVNVTFTSN QSK SKAVVHGI+M
Sbjct: 20  EPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILM 79

Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
           GVP+PFPIP+PDGCKSGINCPIQKD+TYSYLNKLPVK+EYPSIKLVVEW+LQDD +Q LF
Sbjct: 80  GVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLF 139

Query: 691 CWQIPVQIES 720
           CW+IPVQI S
Sbjct: 140 CWEIPVQIVS 149


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,349,979
Number of extensions: 1449577
Number of successful extensions: 5944
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5877
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000721
         (1230 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075898.1| epididymal secretory protein E1 precursor [Mus ...   230   2e-60

>ref|NP_075898.1| epididymal secretory protein E1 precursor [Mus musculus].
          Length = 149

 Score =  230 bits (586), Expect = 2e-60
 Identities = 103/130 (79%), Positives = 116/130 (89%)
 Frame = +1

Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
           EP+HF+DCGS VGVIKEVNV+PCPT PCQLHKGQSYSVN+TFTS TQS+ S A+VHGI+ 
Sbjct: 20  EPLHFKDCGSKVGVIKEVNVSPCPTDPCQLHKGQSYSVNITFTSGTQSQNSTALVHGILE 79

Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
           G+ +PFPIP+PDGCKSGINCPIQKD+ YSYLNKLPVK EYPSIKLVVEWKL+DD    LF
Sbjct: 80  GIRVPFPIPEPDGCKSGINCPIQKDKVYSYLNKLPVKNEYPSIKLVVEWKLEDDKKNNLF 139

Query: 691 CWQIPVQIES 720
           CW+IPVQI S
Sbjct: 140 CWEIPVQITS 149


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,499,758
Number of extensions: 1204059
Number of successful extensions: 4783
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4742
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000721
         (1230 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999371.1| epididymal secretory protein E1 precursor [Sus ...   281   7e-76

>ref|NP_999371.1| epididymal secretory protein E1 precursor [Sus scrofa].
          Length = 149

 Score =  281 bits (718), Expect = 7e-76
 Identities = 130/130 (100%), Positives = 130/130 (100%)
 Frame = +1

Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
           EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM
Sbjct: 20  EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 79

Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
           GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF
Sbjct: 80  GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 139

Query: 691 CWQIPVQIES 720
           CWQIPVQIES
Sbjct: 140 CWQIPVQIES 149


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,805,791
Number of extensions: 929100
Number of successful extensions: 3766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3748
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000721
         (1230 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         837   0.0  

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  837 bits (422), Expect = 0.0
 Identities = 559/603 (92%), Gaps = 9/603 (1%)
 Strand = Plus / Minus

                                                                             
Query: 637       ataaaactggtggtggagtggaaacttcaggatgacaatgaccagtgtctcttctgctgg 696
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573933 ataaaactggtggtggagtggaaacttcaggatgacaatgaccagtgtctcttctgctgg 103573874

                                                                             
Query: 697       caaatcccagtacagattgaaagctagagctcttcagtgccactctgtgcatctgggggt 756
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573873 caaatcccagtacagattgaaagctagagctcttcagtgccactctgtgcatctgggggt 103573814

                                                                             
Query: 757       gacagaacagggatggagggaggggaggagaaatcaagtctaaactcactcagtgccata 816
                 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573813 gacagagcagggatggagggaggggaggagaaatcaagtctaaactcactcagtgccata 103573754

                                                                             
Query: 817       agatgaaaggaatttcccagaaggctgtttcatgcctctgaac-ctccaaaagcaactaa 875
                 ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 103573753 agatgaaaggaatttcctagaaggctgtatcatgcctctgaacgctccaaaagcaactaa 103573694

                                                                             
Query: 876       gaccctatttcctgagagctcagaactgttgcccttgtaacatcctttgtttaagggttg 935
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573693 gaccctatttcctgagagctcagaactgttgcccttgtaacatcctttgtttaagggttg 103573634

                                                                             
Query: 936       aaggagaggagggcatgagaatgtagggattgatttaattgccttcag---nnnnnnnnn 992
                 ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 103573633 aaggagaggagggcatgagaatgtagggattgatttaattgccttcagtttttgtttttc 103573574

                                                                             
Query: 993       nnnnnnnnnnggaatcaggagggtccnaccagaccagacccgaatgangctgcttgggga 1052
                           |||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 103573573 ttttccttttggaatcaggagggtccaaccagacaagacccgaatgaggctgcttgggga 103573514

                                                                             
Query: 1053      tacgcgctaac-tgccctagggttaccgggccttgcagcggaggacgggtttcaaa-cac 1110
                 |||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 103573513 taccggctaacttgccctagggttaccgggccttgcagcggaggacgggtttcaaaccac 103573454

                                                                             
Query: 1111      atcccactagctgggatct-ccacctggcagttcctcctct-cacgtgcctcagtgcatc 1168
                 ||||||||||||||||||| |||||||   ||||||||||| ||||||||||||||||||
Sbjct: 103573453 atcccactagctgggatctcccacctgcaggttcctcctctccacgtgcctcagtgcatc 103573394

                                                                             
Query: 1169      tgg-cattgagcctcctttctgacgctcgacatcacttctagctctgctggcttacgggt 1227
                 ||| |||||||||||||| |||||||||| |||||| |||||||||||||  ||||||||
Sbjct: 103573393 tggccattgagcctccttcctgacgctcggcatcacctctagctctgctgctttacgggt 103573334

                    
Query: 1228      gca 1230
                 |||
Sbjct: 103573333 gca 103573331



 Score =  688 bits (347), Expect = 0.0
 Identities = 350/351 (99%)
 Strand = Plus / Minus

                                                                             
Query: 6         gcggagcgctggagggaggagcagggaggaacgcagagggctgcagcttctctcgctgcg 65
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 103582596 gcggagcgctggagggaggagcagggaggaacgcagagggctgcagcttctcttgctgcg 103582537

                                                                             
Query: 66        gagcaggccagatgggcggagatagggaatgtctgggaccctgtgtctggcttcctagag 125
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582536 gagcaggccagatgggcggagatagggaatgtctgggaccctgtgtctggcttcctagag 103582477

                                                                             
Query: 126       ccgggggcggggcgcaggcggacctcggtcccagttgctggtcacgggtcgcctgactgg 185
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582476 ccgggggcggggcgcaggcggacctcggtcccagttgctggtcacgggtcgcctgactgg 103582417

                                                                             
Query: 186       gctcctccctcggcccgcccctgaaggtttatcttgtgaccgcggcagctggctttcctt 245
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582416 gctcctccctcggcccgcccctgaaggtttatcttgtgaccgcggcagctggctttcctt 103582357

                                                                             
Query: 246       ccgtgagcttgaaacctcctgagctgcgatgcatttcttggccgctgcgttcctgctcct 305
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582356 ccgtgagcttgaaacctcctgagctgcgatgcatttcttggccgctgcgttcctgctcct 103582297

                                                                    
Query: 306       gacactcagcgcttctgccctggccgagccggtgcatttcagggactgcgg 356
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582296 gacactcagcgcttctgccctggccgagccggtgcatttcagggactgcgg 103582246



 Score =  335 bits (169), Expect = 3e-89
 Identities = 172/173 (99%)
 Strand = Plus / Minus

                                                                             
Query: 464       acactcagtcgaaaggcagcaaagccgtggtgcacggcatcgtgatgggtgtcccgattc 523
                 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 103576579 acactcagtcgaaaggcagcaaagccgtggtgcacggcatcgtgatgggcgtcccgattc 103576520

                                                                             
Query: 524       cgtttcccatccccgaccccgatggttgtaagagcggaatcaactgccccatccagaaag 583
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103576519 cgtttcccatccccgaccccgatggttgtaagagcggaatcaactgccccatccagaaag 103576460

                                                                      
Query: 584       accagacctacagctacctgaataaactgccagtgaaggccgagtacccctct 636
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103576459 accagacctacagctacctgaataaactgccagtgaaggccgagtacccctct 103576407



 Score =  208 bits (105), Expect = 5e-51
 Identities = 108/109 (99%)
 Strand = Plus / Minus

                                                                             
Query: 355       ggctcgggggttggagtgataaaggaagtgaatgttaacccatgtcccacccagccctgc 414
                 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 103578566 ggctcgggggttggagtgataaaggaagtgaatgtgaacccatgtcccacccagccctgc 103578507

                                                                  
Query: 415       cagctgcacaaaggacagtcttacagtgtgaatgtcaccttcaccagta 463
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103578506 cagctgcacaaaggacagtcttacagtgtgaatgtcaccttcaccagta 103578458


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,957,609
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 5
Length of query: 1230
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1209
Effective length of database: 2,808,413,156
Effective search space: 3395371505604
Effective search space used: 3395371505604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)