Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000721
(1230 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776343.1| epididymal secretory protein E1 precursor [Bos ... 231 1e-60
>ref|NP_776343.1| epididymal secretory protein E1 precursor [Bos taurus].
Length = 149
Score = 231 bits (589), Expect = 1e-60
Identities = 101/130 (77%), Positives = 120/130 (92%)
Frame = +1
Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
EPV F+DCGS VGVIKEVNV+PCPTQPC+LH+GQSYSVNVTFTSNTQS+ SKAVVHGIVM
Sbjct: 20 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVM 79
Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
G+P+PFPIP+ DGCKSGI CPI+KD+TY+Y+NKLPVK EYPSIK+VVEW+L DD +Q F
Sbjct: 80 GIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFF 139
Query: 691 CWQIPVQIES 720
CWQIP+++E+
Sbjct: 140 CWQIPIEVEA 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,195,066
Number of extensions: 1433998
Number of successful extensions: 5938
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5898
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000721
(1230 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855001.1| PREDICTED: similar to Epididymal secretory prot... 230 2e-60
Alignment gi|NP_001003242.1| epididymal secretory protein E1 precursor [C... 228 7e-60
>ref|XP_855001.1| PREDICTED: similar to Epididymal secretory protein E1 precursor
(Niemann-Pick disease type C2 protein) (hE1) [Canis
familiaris].
Length = 149
Score = 230 bits (587), Expect = 2e-60
Identities = 106/129 (82%), Positives = 117/129 (90%)
Frame = +1
Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
EPVHF+D GS VGVIKE+NVNPCPTQPC+LHKGQSYSVNVTFTSN S+ SKAVVHGIV+
Sbjct: 20 EPVHFKDGGSAVGVIKELNVNPCPTQPCKLHKGQSYSVNVTFTSNIPSQSSKAVVHGIVL 79
Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
GV +PFPIP+ DGCKSGINCPIQKD+TYSYLNKLPVK EYPSIKLVV+W L DN+Q LF
Sbjct: 80 GVAVPFPIPEADGCKSGINCPIQKDKTYSYLNKLPVKNEYPSIKLVVQWMLLGDNNQHLF 139
Query: 691 CWQIPVQIE 717
CW+IPVQIE
Sbjct: 140 CWEIPVQIE 148
>ref|NP_001003242.1| epididymal secretory protein E1 precursor [Canis lupus familiaris].
Length = 149
Score = 228 bits (582), Expect = 7e-60
Identities = 104/127 (81%), Positives = 115/127 (90%)
Frame = +1
Query: 337 VHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVMGV 516
VHF+DCGS VGVIKE+NVNPCP QPC+LHKGQSYSVNVTFTSN S+ SKAVVHGIV+GV
Sbjct: 22 VHFKDCGSAVGVIKELNVNPCPAQPCKLHKGQSYSVNVTFTSNIPSQSSKAVVHGIVLGV 81
Query: 517 PIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLFCW 696
+PFPIP+ DGCKSGINCPIQKD+TYSYLNKLPVK EYPSIKLVV+W L DN+Q LFCW
Sbjct: 82 AVPFPIPEADGCKSGINCPIQKDKTYSYLNKLPVKNEYPSIKLVVQWMLLGDNNQHLFCW 141
Query: 697 QIPVQIE 717
+IPVQIE
Sbjct: 142 EIPVQIE 148
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,483,482
Number of extensions: 1490430
Number of successful extensions: 6341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6327
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000721
(1230 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006423.1| epididymal secretory protein E1 precursor [Homo... 241 1e-63
>ref|NP_006423.1| epididymal secretory protein E1 precursor [Homo sapiens].
Length = 151
Score = 241 bits (615), Expect = 1e-63
Identities = 111/130 (85%), Positives = 121/130 (93%)
Frame = +1
Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
EPV F+DCGS GVIKEVNV+PCPTQPCQL KGQSYSVNVTFTSN QSK SKAVVHGI+M
Sbjct: 20 EPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILM 79
Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
GVP+PFPIP+PDGCKSGINCPIQKD+TYSYLNKLPVK+EYPSIKLVVEW+LQDD +Q LF
Sbjct: 80 GVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLF 139
Query: 691 CWQIPVQIES 720
CW+IPVQI S
Sbjct: 140 CWEIPVQIVS 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,349,979
Number of extensions: 1449577
Number of successful extensions: 5944
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5877
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000721
(1230 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075898.1| epididymal secretory protein E1 precursor [Mus ... 230 2e-60
>ref|NP_075898.1| epididymal secretory protein E1 precursor [Mus musculus].
Length = 149
Score = 230 bits (586), Expect = 2e-60
Identities = 103/130 (79%), Positives = 116/130 (89%)
Frame = +1
Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
EP+HF+DCGS VGVIKEVNV+PCPT PCQLHKGQSYSVN+TFTS TQS+ S A+VHGI+
Sbjct: 20 EPLHFKDCGSKVGVIKEVNVSPCPTDPCQLHKGQSYSVNITFTSGTQSQNSTALVHGILE 79
Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
G+ +PFPIP+PDGCKSGINCPIQKD+ YSYLNKLPVK EYPSIKLVVEWKL+DD LF
Sbjct: 80 GIRVPFPIPEPDGCKSGINCPIQKDKVYSYLNKLPVKNEYPSIKLVVEWKLEDDKKNNLF 139
Query: 691 CWQIPVQIES 720
CW+IPVQI S
Sbjct: 140 CWEIPVQITS 149
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,499,758
Number of extensions: 1204059
Number of successful extensions: 4783
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4742
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000721
(1230 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999371.1| epididymal secretory protein E1 precursor [Sus ... 281 7e-76
>ref|NP_999371.1| epididymal secretory protein E1 precursor [Sus scrofa].
Length = 149
Score = 281 bits (718), Expect = 7e-76
Identities = 130/130 (100%), Positives = 130/130 (100%)
Frame = +1
Query: 331 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 510
EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM
Sbjct: 20 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 79
Query: 511 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 690
GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF
Sbjct: 80 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 139
Query: 691 CWQIPVQIES 720
CWQIPVQIES
Sbjct: 140 CWQIPVQIES 149
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,805,791
Number of extensions: 929100
Number of successful extensions: 3766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3748
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000721
(1230 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 837 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 837 bits (422), Expect = 0.0
Identities = 559/603 (92%), Gaps = 9/603 (1%)
Strand = Plus / Minus
Query: 637 ataaaactggtggtggagtggaaacttcaggatgacaatgaccagtgtctcttctgctgg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573933 ataaaactggtggtggagtggaaacttcaggatgacaatgaccagtgtctcttctgctgg 103573874
Query: 697 caaatcccagtacagattgaaagctagagctcttcagtgccactctgtgcatctgggggt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573873 caaatcccagtacagattgaaagctagagctcttcagtgccactctgtgcatctgggggt 103573814
Query: 757 gacagaacagggatggagggaggggaggagaaatcaagtctaaactcactcagtgccata 816
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573813 gacagagcagggatggagggaggggaggagaaatcaagtctaaactcactcagtgccata 103573754
Query: 817 agatgaaaggaatttcccagaaggctgtttcatgcctctgaac-ctccaaaagcaactaa 875
||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 103573753 agatgaaaggaatttcctagaaggctgtatcatgcctctgaacgctccaaaagcaactaa 103573694
Query: 876 gaccctatttcctgagagctcagaactgttgcccttgtaacatcctttgtttaagggttg 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573693 gaccctatttcctgagagctcagaactgttgcccttgtaacatcctttgtttaagggttg 103573634
Query: 936 aaggagaggagggcatgagaatgtagggattgatttaattgccttcag---nnnnnnnnn 992
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573633 aaggagaggagggcatgagaatgtagggattgatttaattgccttcagtttttgtttttc 103573574
Query: 993 nnnnnnnnnnggaatcaggagggtccnaccagaccagacccgaatgangctgcttgggga 1052
|||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 103573573 ttttccttttggaatcaggagggtccaaccagacaagacccgaatgaggctgcttgggga 103573514
Query: 1053 tacgcgctaac-tgccctagggttaccgggccttgcagcggaggacgggtttcaaa-cac 1110
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 103573513 taccggctaacttgccctagggttaccgggccttgcagcggaggacgggtttcaaaccac 103573454
Query: 1111 atcccactagctgggatct-ccacctggcagttcctcctct-cacgtgcctcagtgcatc 1168
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct: 103573453 atcccactagctgggatctcccacctgcaggttcctcctctccacgtgcctcagtgcatc 103573394
Query: 1169 tgg-cattgagcctcctttctgacgctcgacatcacttctagctctgctggcttacgggt 1227
||| |||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 103573393 tggccattgagcctccttcctgacgctcggcatcacctctagctctgctgctttacgggt 103573334
Query: 1228 gca 1230
|||
Sbjct: 103573333 gca 103573331
Score = 688 bits (347), Expect = 0.0
Identities = 350/351 (99%)
Strand = Plus / Minus
Query: 6 gcggagcgctggagggaggagcagggaggaacgcagagggctgcagcttctctcgctgcg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 103582596 gcggagcgctggagggaggagcagggaggaacgcagagggctgcagcttctcttgctgcg 103582537
Query: 66 gagcaggccagatgggcggagatagggaatgtctgggaccctgtgtctggcttcctagag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582536 gagcaggccagatgggcggagatagggaatgtctgggaccctgtgtctggcttcctagag 103582477
Query: 126 ccgggggcggggcgcaggcggacctcggtcccagttgctggtcacgggtcgcctgactgg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582476 ccgggggcggggcgcaggcggacctcggtcccagttgctggtcacgggtcgcctgactgg 103582417
Query: 186 gctcctccctcggcccgcccctgaaggtttatcttgtgaccgcggcagctggctttcctt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582416 gctcctccctcggcccgcccctgaaggtttatcttgtgaccgcggcagctggctttcctt 103582357
Query: 246 ccgtgagcttgaaacctcctgagctgcgatgcatttcttggccgctgcgttcctgctcct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582356 ccgtgagcttgaaacctcctgagctgcgatgcatttcttggccgctgcgttcctgctcct 103582297
Query: 306 gacactcagcgcttctgccctggccgagccggtgcatttcagggactgcgg 356
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582296 gacactcagcgcttctgccctggccgagccggtgcatttcagggactgcgg 103582246
Score = 335 bits (169), Expect = 3e-89
Identities = 172/173 (99%)
Strand = Plus / Minus
Query: 464 acactcagtcgaaaggcagcaaagccgtggtgcacggcatcgtgatgggtgtcccgattc 523
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 103576579 acactcagtcgaaaggcagcaaagccgtggtgcacggcatcgtgatgggcgtcccgattc 103576520
Query: 524 cgtttcccatccccgaccccgatggttgtaagagcggaatcaactgccccatccagaaag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103576519 cgtttcccatccccgaccccgatggttgtaagagcggaatcaactgccccatccagaaag 103576460
Query: 584 accagacctacagctacctgaataaactgccagtgaaggccgagtacccctct 636
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103576459 accagacctacagctacctgaataaactgccagtgaaggccgagtacccctct 103576407
Score = 208 bits (105), Expect = 5e-51
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 355 ggctcgggggttggagtgataaaggaagtgaatgttaacccatgtcccacccagccctgc 414
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 103578566 ggctcgggggttggagtgataaaggaagtgaatgtgaacccatgtcccacccagccctgc 103578507
Query: 415 cagctgcacaaaggacagtcttacagtgtgaatgtcaccttcaccagta 463
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103578506 cagctgcacaaaggacagtcttacagtgtgaatgtcaccttcaccagta 103578458
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,957,609
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 5
Length of query: 1230
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1209
Effective length of database: 2,808,413,156
Effective search space: 3395371505604
Effective search space used: 3395371505604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)