Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000728
(3320 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002707872.1| PREDICTED: lysosomal trafficking regulator-l... 2128 0.0
Alignment gi|XP_617252.3| PREDICTED: lysosomal trafficking regulator-like... 2128 0.0
Alignment gi|NP_001192874.1| WD repeat- and FYVE domain-containing protei... 738 0.0
Alignment gi|XP_002699004.1| PREDICTED: hCG1745555-like [Bos taurus]. 737 0.0
Alignment gi|NP_776445.1| lysosomal-trafficking regulator [Bos taurus]. 422 e-117
Alignment gi|NP_001096643.1| neurobeachin-like protein 1 [Bos taurus]. 377 e-104
Alignment gi|XP_002694372.1| PREDICTED: LPS-responsive vesicle traffickin... 362 2e-99
Alignment gi|XP_002701684.1| PREDICTED: LPS-responsive vesicle traffickin... 362 2e-99
Alignment gi|XP_002691798.1| PREDICTED: neurobeachin [Bos taurus]. 357 4e-98
Alignment gi|XP_002697156.1| PREDICTED: neurobeachin-like 2 [Bos taurus]. 320 7e-87
>ref|XP_002707872.1| PREDICTED: lysosomal trafficking regulator-like [Bos taurus].
Length = 3526
Score = 2128 bits (5515), Expect = 0.0
Identities = 1035/1105 (93%), Positives = 1046/1105 (94%)
Frame = +1
Query: 1 QPETPDDIIPQKKPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEATQQEPEHG 180
QPETPDDIIPQKKPARYRRA+SYDSKEYYMRLASGNPAIVQDAIVESSEGEA QQEPEHG
Sbjct: 2413 QPETPDDIIPQKKPARYRRAVSYDSKEYYMRLASGNPAIVQDAIVESSEGEAAQQEPEHG 2472
Query: 181 EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLED 360
EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQ AEGSS+EEEEKTDNATLLRLLE+
Sbjct: 2473 EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQTAEGSSIEEEEKTDNATLLRLLEE 2532
Query: 361 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 540
GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP
Sbjct: 2533 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 2592
Query: 541 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 720
RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY
Sbjct: 2593 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 2652
Query: 721 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 900
QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL
Sbjct: 2653 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 2712
Query: 901 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 1080
NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK
Sbjct: 2713 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 2772
Query: 1081 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 1260
DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW
Sbjct: 2773 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 2832
Query: 1261 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 1440
YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR
Sbjct: 2833 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 2892
Query: 1441 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 1620
VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET
Sbjct: 2893 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 2952
Query: 1621 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSL 1800
ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAG SVPPG SDKIFFHHLDNLRPSL
Sbjct: 2953 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGASVPPGSASDKIFFHHLDNLRPSL 3012
Query: 1801 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV 1980
TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV
Sbjct: 3013 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV 3072
Query: 1981 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTC 2160
YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEM TSKEKA+TLTLKQALLGHTDTVTC
Sbjct: 3073 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMSTSKEKAKTLTLKQALLGHTDTVTC 3132
Query: 2161 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTHI 2340
ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGT+I
Sbjct: 3133 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYI 3192
Query: 2341 HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQXX 2520
HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQ
Sbjct: 3193 HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVP 3252
Query: 2521 XXXXXXXXXXXXMQEDCPEAQIGXXXXXXXXXXXXXXXXXXXXXPKDTPSQPSSTSHRPR 2700
MQEDCPEAQIG PKDTPSQPSSTSHRPR
Sbjct: 3253 ETPAPEPAEVLEMQEDCPEAQIGQEAQDEDSSDSEADEQSVSQDPKDTPSQPSSTSHRPR 3312
Query: 2701 AASCRATATWCNXXXXXXXXXXXXQLSLDERDGFILVNYSEGRARAHLQPPLNHPHPSPV 2880
AASCRATATW N QLSLDE+DGFI VNYSEG++R HLQ PLNHPHP+P+
Sbjct: 3313 AASCRATATWYNDSGSDDSRRWSDQLSLDEKDGFIFVNYSEGQSRPHLQTPLNHPHPNPI 3372
Query: 2881 EVRNYNRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG 3060
E RNY+RLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG
Sbjct: 3373 EARNYSRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG 3432
Query: 3061 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQS 3240
RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRH CRNCGQLFCQKCSRFQS
Sbjct: 3433 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQS 3492
Query: 3241 EIKRLKISSPVRVCQNCYYNLQHER 3315
EIKRLKISSPVRVCQNCYYNLQHER
Sbjct: 3493 EIKRLKISSPVRVCQNCYYNLQHER 3517
>ref|XP_617252.3| PREDICTED: lysosomal trafficking regulator-like [Bos taurus].
Length = 3527
Score = 2128 bits (5515), Expect = 0.0
Identities = 1035/1105 (93%), Positives = 1046/1105 (94%)
Frame = +1
Query: 1 QPETPDDIIPQKKPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEATQQEPEHG 180
QPETPDDIIPQKKPARYRRA+SYDSKEYYMRLASGNPAIVQDAIVESSEGEA QQEPEHG
Sbjct: 2414 QPETPDDIIPQKKPARYRRAVSYDSKEYYMRLASGNPAIVQDAIVESSEGEAAQQEPEHG 2473
Query: 181 EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLED 360
EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQ AEGSS+EEEEKTDNATLLRLLE+
Sbjct: 2474 EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQTAEGSSIEEEEKTDNATLLRLLEE 2533
Query: 361 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 540
GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP
Sbjct: 2534 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 2593
Query: 541 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 720
RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY
Sbjct: 2594 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 2653
Query: 721 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 900
QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL
Sbjct: 2654 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 2713
Query: 901 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 1080
NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK
Sbjct: 2714 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 2773
Query: 1081 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 1260
DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW
Sbjct: 2774 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 2833
Query: 1261 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 1440
YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR
Sbjct: 2834 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 2893
Query: 1441 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 1620
VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET
Sbjct: 2894 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 2953
Query: 1621 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSL 1800
ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAG SVPPG SDKIFFHHLDNLRPSL
Sbjct: 2954 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGASVPPGSASDKIFFHHLDNLRPSL 3013
Query: 1801 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV 1980
TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV
Sbjct: 3014 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV 3073
Query: 1981 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTC 2160
YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEM TSKEKA+TLTLKQALLGHTDTVTC
Sbjct: 3074 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMSTSKEKAKTLTLKQALLGHTDTVTC 3133
Query: 2161 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTHI 2340
ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGT+I
Sbjct: 3134 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYI 3193
Query: 2341 HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQXX 2520
HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQ
Sbjct: 3194 HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVP 3253
Query: 2521 XXXXXXXXXXXXMQEDCPEAQIGXXXXXXXXXXXXXXXXXXXXXPKDTPSQPSSTSHRPR 2700
MQEDCPEAQIG PKDTPSQPSSTSHRPR
Sbjct: 3254 ETPAPEPAEVLEMQEDCPEAQIGQEAQDEDSSDSEADEQSVSQDPKDTPSQPSSTSHRPR 3313
Query: 2701 AASCRATATWCNXXXXXXXXXXXXQLSLDERDGFILVNYSEGRARAHLQPPLNHPHPSPV 2880
AASCRATATW N QLSLDE+DGFI VNYSEG++R HLQ PLNHPHP+P+
Sbjct: 3314 AASCRATATWYNDSGSDDSRRWSDQLSLDEKDGFIFVNYSEGQSRPHLQTPLNHPHPNPI 3373
Query: 2881 EVRNYNRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG 3060
E RNY+RLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG
Sbjct: 3374 EARNYSRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG 3433
Query: 3061 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQS 3240
RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRH CRNCGQLFCQKCSRFQS
Sbjct: 3434 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQS 3493
Query: 3241 EIKRLKISSPVRVCQNCYYNLQHER 3315
EIKRLKISSPVRVCQNCYYNLQHER
Sbjct: 3494 EIKRLKISSPVRVCQNCYYNLQHER 3518
>ref|NP_001192874.1| WD repeat- and FYVE domain-containing protein 4 [Bos taurus].
Length = 3188
Score = 738 bits (1904), Expect = 0.0
Identities = 393/840 (46%), Positives = 527/840 (62%), Gaps = 18/840 (2%)
Frame = +1
Query: 40 PARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSE--GEATQQEPEHGEDTIAKVKGLV 213
PAR R+ I R S A Q+ + ES + G +Q EH ++
Sbjct: 2298 PARMRKRI---------RRLSPLEAPNQERLKESQDRNGNVSQINTEHQDELT------- 2341
Query: 214 KPPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEE--EEKTDNATLLRLLEDGEKIQHMYR 387
LK S D TQ + E E+ E + +L+ L D EK+ Y
Sbjct: 2342 ---LKEGESEADEVAGCTQLTFFPALHESLHSEDFLELCQERQVILQELLDHEKVTQKYS 2398
Query: 388 CARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQ 567
VQG EGLLLFG++H Y+ + FT++ ++ N+ +P I + S
Sbjct: 2399 VVIVQGHLVCEGLLLFGQQHLYICENFTLSPVGDVYCTRHCLSNISDPFIFNMCSKDRSS 2458
Query: 568 LKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPS 747
+C +Y D++E+ + R+LLQ IA+EVF +G + L F R+KV++ F + PS
Sbjct: 2459 DHYSCQRHSYGDLRELRQARFLLQDIALEVFFQNGYSKFLVFHNSDRSKVFKSFCSFQPS 2518
Query: 748 LTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYN 927
L + E L ++++ Q+W++ +ISNF+YLM+LNTLAGR+YN
Sbjct: 2519 LKGKGFT----------EDTLNLRRYPSSDRTMLQKWQKRDISNFEYLMYLNTLAGRTYN 2568
Query: 928 DLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGET 1107
D MQYPVFPW+LADY S+ ++L NPKTFR+L+KPMGAQT ER ++ +R+K+ E G+
Sbjct: 2569 DYMQYPVFPWVLADYTSQTLNLMNPKTFRDLSKPMGAQTKERKLKFIQRFKEVEKTEGDV 2628
Query: 1108 PAY-HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
A HY THYSSA+IVASYLVRM PFTQ F LQGG FD+ADRMFHSV+ AW SAS+ NM
Sbjct: 2629 TARCHYCTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKNAWESASRENM 2688
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALEC 1464
+DV+EL PEFFYLPEFL N N + GC Q+GT LGDV LPPWA GDPR+FI +HR+ALE
Sbjct: 2689 SDVRELTPEFFYLPEFLTNCNALEFGCMQDGTALGDVQLPPWADGDPRKFISLHRQALES 2748
Query: 1465 DYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINN 1644
D+VSA+LH WIDLIFGYKQQG AAVEAVN FH FY +VD+ +I+DPL + +GF++N
Sbjct: 2749 DFVSANLHHWIDLIFGYKQQGSAAVEAVNTFHPYFYGDKVDLSSISDPLIRSTILGFVSN 2808
Query: 1645 FGQIPKQLFKKPHPPKRVRSRLNGDNAGISVP---PGCTSDKIFFHHLDNLRPSLTPVKE 1815
FGQ+PKQLF KPHP + + +S P PG + F + L +LRPS VK+
Sbjct: 2809 FGQVPKQLFTKPHPARTAAGK-PSPGKDVSTPASLPG--HPQPFLYSLQSLRPSQVTVKD 2865
Query: 1816 L----------KEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESD 1965
+ K +G IV T+K ILAVE NK+L+PP W++TF+WG+ D SC LG+Y SD
Sbjct: 2866 MYLFSLGSESPKGAIGHIVPTEKTILAVETNKMLLPPHWSRTFSWGFDDFSCCLGSYGSD 2925
Query: 1966 KAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHT 2145
K + +E L+ WG+ LCA CP+P +IT GTS VVCVWE+ +K +A L LKQAL GHT
Sbjct: 2926 KILVTFENLAAWGRCLCAACPSPTTIITSGTSAVVCVWELSMTKGRATGLRLKQALYGHT 2985
Query: 2146 DTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSC 2325
VTC AS+ + ++VSGS+DRTCI+WDL+ L+ + +L HR VSA+ I++++G IVSC
Sbjct: 2986 QAVTCLAASVTFSLLVSGSQDRTCILWDLDHLTHVARLPAHRDGVSAVAISDVSGTIVSC 3045
Query: 2326 AGTHIHVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRME 2505
AG H+ +W +NG P+ S+ T G I CC V E WDT +VI+TG DG+VR W+ E
Sbjct: 3046 AGAHLSLWDVNGQPLASITTAWGPEGAITCCYVVEGPAWDTSHVIITGSRDGMVRIWKTE 3105
>ref|XP_002699004.1| PREDICTED: hCG1745555-like [Bos taurus].
Length = 3188
Score = 737 bits (1903), Expect = 0.0
Identities = 392/840 (46%), Positives = 527/840 (62%), Gaps = 18/840 (2%)
Frame = +1
Query: 40 PARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSE--GEATQQEPEHGEDTIAKVKGLV 213
PAR R+ I R S A Q+ + ES + G +Q EH ++
Sbjct: 2298 PARMRKRI---------RRLSPLEAPNQERLKESQDRNGNVSQINTEHQDELT------- 2341
Query: 214 KPPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEE--EEKTDNATLLRLLEDGEKIQHMYR 387
LK S D TQ + E E+ E + +L+ L D EK+ Y
Sbjct: 2342 ---LKEGESEADEVAGCTQLTFFPALHESLHSEDFLELCQERQVILQELLDHEKVTQKYS 2398
Query: 388 CARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQ 567
VQG EGLLLFG++H Y+ + FT++ ++ N+ +P I + S
Sbjct: 2399 VVIVQGHLVCEGLLLFGQQHLYICENFTLSPVGDVYCTRHCLSNISDPFIFNMCSKDRSS 2458
Query: 568 LKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPS 747
+C +Y D++E+ + R+LLQ IA+EVF +G + L F R+KV++ F + PS
Sbjct: 2459 DHYSCQRHSYGDLRELRQARFLLQDIALEVFFQNGYSKFLVFHNSDRSKVFKSFCSFQPS 2518
Query: 748 LTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYN 927
L + E L ++++ Q+W++ +ISNF+YLM+LNTLAGR+YN
Sbjct: 2519 LKGKGFT----------EDTLNLRRYPSSDRTMLQKWQKRDISNFEYLMYLNTLAGRTYN 2568
Query: 928 DLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGET 1107
D MQYPVFPW+LADY S+ ++L NPKTFR+L+KPMGAQT ER ++ +R+K+ E G+
Sbjct: 2569 DYMQYPVFPWVLADYTSQTLNLMNPKTFRDLSKPMGAQTKERKLKFIQRFKEVEKTEGDV 2628
Query: 1108 PAY-HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
A HY THYSSA+IVASYLVRM PFTQ F LQGG FD+ADRMFHSV+ AW SAS+ NM
Sbjct: 2629 TARCHYCTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKNAWESASRENM 2688
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALEC 1464
+DV+EL PEFFYLPEFL N N + GC Q+GT LGDV LPPWA GDPR+FI +HR+ALE
Sbjct: 2689 SDVRELTPEFFYLPEFLTNCNALEFGCMQDGTALGDVQLPPWADGDPRKFISLHRQALES 2748
Query: 1465 DYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINN 1644
D+VSA+LH WIDLIFGYKQQG AAVEAVN FH FY +VD+ +I+DPL + +GF++N
Sbjct: 2749 DFVSANLHHWIDLIFGYKQQGSAAVEAVNTFHPYFYGDKVDLSSISDPLIRSTILGFVSN 2808
Query: 1645 FGQIPKQLFKKPHPPKRVRSRLNGDNAGISVP---PGCTSDKIFFHHLDNLRPSLTPVKE 1815
FGQ+PKQLF KPHP + + +S P PG + F + L +LRPS VK+
Sbjct: 2809 FGQVPKQLFTKPHPARTAAGK-PSPGKDVSTPASLPG--HPQPFLYSLQSLRPSQVTVKD 2865
Query: 1816 L----------KEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESD 1965
+ K +G IV T+K ILAVE NK+L+PP W++TF+WG+ D SC LG+Y SD
Sbjct: 2866 MYLFSLGSESPKGAIGHIVPTEKTILAVETNKMLLPPHWSRTFSWGFDDFSCCLGSYGSD 2925
Query: 1966 KAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHT 2145
K + +E L+ WG+ LCA CP+P +IT GTS VVCVWE+ +K +A L LKQAL GHT
Sbjct: 2926 KILVTFENLAAWGRCLCAACPSPTTIITSGTSAVVCVWELSMTKGRATGLRLKQALYGHT 2985
Query: 2146 DTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSC 2325
VTC AS+ + ++VSGS+DRTCI+WDL+ L+ + +L HR +SA+ I++++G IVSC
Sbjct: 2986 QAVTCLAASVTFSLLVSGSQDRTCILWDLDHLTHVARLPAHRDGISAVAISDVSGTIVSC 3045
Query: 2326 AGTHIHVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRME 2505
AG H+ +W +NG P+ S+ T G I CC V E WDT +VI+TG DG+VR W+ E
Sbjct: 3046 AGAHLSLWDVNGQPLASITTAWGPEGAITCCYVVEGPAWDTSHVIITGSRDGMVRIWKTE 3105
>ref|NP_776445.1| lysosomal-trafficking regulator [Bos taurus].
Length = 3796
Score = 422 bits (1085), Expect = e-117
Identities = 282/807 (34%), Positives = 415/807 (51%), Gaps = 64/807 (7%)
Frame = +1
Query: 268 QEQLQDQVAEGSSMEEEEKTDNA--TLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGK 441
+++ +D V S E+KT ++ + ++ E I+ RC V + G LL GK
Sbjct: 2973 RQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGK 3032
Query: 442 EHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHK 621
Y ++ + T E +++ +L+ + YE+IKEVHK
Sbjct: 3033 CGMYFVED-NASDTVECSNLQ-------------------GELEPASFSWTYEEIKEVHK 3072
Query: 622 RRYLLQPIAVEVFSGDGRNYLLAFQKG-IRNKVYQRFLAVVPSLTDSSESVSGQRPNTSV 798
R + L+ AVE+F +GR LLAF +RN VY L + PN +
Sbjct: 3073 RWWQLRDNAVEIFLTNGRTLLLAFDNTKVRNDVYHSIL-------------TNNLPNL-L 3118
Query: 799 EQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDS 978
E G+ ++T W G+I+NF+YL HLN AGRS+NDLMQYPVFP+ILADY S
Sbjct: 3119 EYGN--------ITALTHLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVS 3170
Query: 979 EEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWE----------DPNGETPAYHYGT 1128
E +DL++P +RNL+KP+ Q E+ +Y YK E DP YHYG+
Sbjct: 3171 ETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGS 3230
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS++ V +LVRM PFT++FL Q FD+ DR FHS W +S +M DVKELIP
Sbjct: 3231 HYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIP 3290
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EFFYLPEFL N FD G +QNG ++ V LPPWA+ DPR FI +HR+ALE DYVS ++
Sbjct: 3291 EFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNIC 3350
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDL+FGYKQ+G A+V+A+NVFH Y G +D+ + DP++ A I +GQ P+QL
Sbjct: 3351 QWIDLVFGYKQKGKASVQAINVFHPATYFG-MDVSAVEDPVQRRALRTMIKTYGQTPRQL 3409
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR----PS-LTPVKELK--EP 1827
F+ H R S+LN + + G F + ++ PS L+ +K LK E
Sbjct: 3410 FQSAH-ASRPGSKLNIEGE-LPAAVGLLVQFAFRETREQVKEITYPSPLSWIKGLKWGEY 3467
Query: 1828 VGQ------IVC---------------TDKGILAVEQNKVLIPP---------------T 1899
VG +VC + I + +N L+
Sbjct: 3468 VGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNSTDIQ 3527
Query: 1900 WNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVW 2079
W+ +WGYAD RL + +S+ + + ++ CA P+ + TG V+ +
Sbjct: 3528 WSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAY 3587
Query: 2080 EMGTSKEKARTLTLKQA--LLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLT 2253
+ + ++ L GHT+ ++ Y I++S SRD TCIIWDLN+L ++
Sbjct: 3588 SNRFTSGTPSEIEMESQIHLYGHTEEISSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQ 3647
Query: 2254 QLRGHRAPVSALCINELTGDIVSC-----AGTHIHVWSINGNPVVSVNTFTGRSQQIVC- 2415
L GH++PV+A+ +E TGDI + G+ + +W++NG+ V V+ ++I+C
Sbjct: 3648 SLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVH-----CREIICS 3702
Query: 2416 CCVSEMNEWDTQNVIVTGHSDGVVRFW 2496
S E + NVI G +G+VR W
Sbjct: 3703 VAFSNQPEGISINVIAGGLENGIVRLW 3729
>ref|NP_001096643.1| neurobeachin-like protein 1 [Bos taurus].
Length = 2592
Score = 377 bits (969), Expect = e-104
Identities = 254/713 (35%), Positives = 357/713 (50%), Gaps = 11/713 (1%)
Frame = +1
Query: 256 DEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLF 435
+E+ + ++++ +++E+E+ + L L ED C + +D G L
Sbjct: 1848 EEDKLDLPEEEITSRVNIDEKEEQNQKEKLVLSED---------CELITIIDVIPGRLEI 1898
Query: 436 GKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEV 615
+H Y DG D + + + ++E+
Sbjct: 1899 TTQHIYFYDGSIEKEDGVGFDFK----------------------------WPHSQVREI 1930
Query: 616 HKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTS 795
H RRY L+ A+E+F D NY L F+K +RNKVY R L++ S + G R
Sbjct: 1931 HLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKVYSRLLSL------HSPNSYGTRSPQE 1984
Query: 796 VEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYD 975
+ + SGL TQ+W EISNF YL+ LNT+AGR+YNDL QYPVFPWIL DY
Sbjct: 1985 LFKASGL----------TQKWVNREISNFDYLIQLNTMAGRTYNDLAQYPVFPWILQDYT 2034
Query: 976 SEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVA 1155
SEE+DL NP FR+L+KP+G D+ +++Y+++EDP G +HYGTHYS++ V
Sbjct: 2035 SEELDLNNPSVFRDLSKPIGVVNDKNAKATREKYENFEDPMGTIDKFHYGTHYSNSAGVM 2094
Query: 1156 SYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFL 1335
YL+R EPFT + ++LQ G FD ADR FHS+ W A N DVKELIPEFFY PEFL
Sbjct: 2095 HYLIRTEPFTTLHIQLQSGRFDCADRQFHSIPATW-QALMDNPYDVKELIPEFFYFPEFL 2153
Query: 1336 FNSNNFDLGCKQNGTKL-GDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFG 1512
N N F+LG Q +L DV+LP WAK +FI HR+ALE +YVSAHLHEWIDLIFG
Sbjct: 2154 ENQNQFNLGRLQVSKELVNDVVLPKWAK-SAEDFICKHRKALESEYVSAHLHEWIDLIFG 2212
Query: 1513 YKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 1692
YKQ+GPAAVEA+NVF++ YEG VD+ + D + A G INNFGQ P QL K
Sbjct: 2213 YKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLK----IT 2268
Query: 1693 RVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSLTPVKELKEPVGQ-IVCTDKGILAV 1869
+ + G + + ++ F P + + P + T K +
Sbjct: 2269 LSMNHIIGTHGWLPYDRNISNYFTFIRDQTVTNPKTQ--RSMNGPFAPGLEITSKLFIVS 2326
Query: 1870 EQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVT-------VYECLSEWGQILCAICP 2028
K+L F+ G+ D S ++ + K ++ + CL+ C I
Sbjct: 2327 HDAKLL--------FSAGHWDNSIQVMSLTKGKLISHNIRHMDIVTCLA---TDYCGI-- 2373
Query: 2029 NPKLVITGGTSTVVCVWEMGTSKEKARTLTLK--QALLGHTDTVTCATASLAYHIIVSGS 2202
+I+G T +W++ L K Q L GHTD V S + VSGS
Sbjct: 2374 ---HLISGSRDTTCMIWQITQQGGVPMGLASKPFQILYGHTDEVLSVAISTELDMAVSGS 2430
Query: 2203 RDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTHIHVWSING 2361
RD T II + L+ GH S++ + D +H++S+NG
Sbjct: 2431 RDGTVIIHTIPNLAI--SWEGHIVMYSSIEESTSLKD-----KNALHLFSVNG 2476
>ref|XP_002694372.1| PREDICTED: LPS-responsive vesicle trafficking, beach and anchor
containing [Bos taurus].
Length = 2797
Score = 362 bits (928), Expect = 2e-99
Identities = 216/566 (38%), Positives = 308/566 (54%), Gaps = 19/566 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + + F K +L V T +
Sbjct: 2069 FSEIRSIFSRRYLLQNTALEIFMANRVAIMFNFPDPATVKKVVNYLPRVGIGTSFGLPQT 2128
Query: 775 GQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFP 954
+ S Q L ++TQRW+ EISNF+YLM LNT+AGR+YNDL QYPVFP
Sbjct: 2129 RRISLASPRQ-------LFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFP 2181
Query: 955 WILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHY 1134
W++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED + P +HYGTHY
Sbjct: 2182 WVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHY 2239
Query: 1135 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEF 1314
S+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + S+ + +D+KELIPEF
Sbjct: 2240 STASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEF 2298
Query: 1315 FYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEW 1494
+YL E N NN++LG +GT + DV LPPWAK EF+R++R ALE ++VS LH+W
Sbjct: 2299 YYLSEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALESEFVSCQLHQW 2357
Query: 1495 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK 1674
IDLIFGYKQQGP AV A+NVF++L YEG V++ +I DP+ A I +FGQ P QL
Sbjct: 2358 IDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVKAQIRSFGQTPSQLLI 2417
Query: 1675 KPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVCTD 1851
+PHPP+ + + P +D+ + L+ PS +PV + + T
Sbjct: 2418 EPHPPR---------GSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAT- 2467
Query: 1852 KGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYESDKAVTVYEC 1989
++ V N++ W+ A A ++ G + + +
Sbjct: 2468 PAVITVTANRLFAMNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQS 2527
Query: 1990 LSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATA 2169
+ Q N +++ G W+ T L Q + GH D VTC T
Sbjct: 2528 IQVHSQCFVITSDNRYILLCG-------FWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTR 2580
Query: 2170 SLAY----HIIVSGSRDRTCIIWDLN 2235
S +Y I+SGSRD T ++W N
Sbjct: 2581 SESYIGGNCYILSGSRDATLLLWYWN 2606
>ref|XP_002701684.1| PREDICTED: LPS-responsive vesicle trafficking, beach and anchor
containing, partial [Bos taurus].
Length = 2815
Score = 362 bits (928), Expect = 2e-99
Identities = 216/566 (38%), Positives = 308/566 (54%), Gaps = 19/566 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + + F K +L V T +
Sbjct: 2087 FSEIRSIFSRRYLLQNTALEIFMANRVAIMFNFPDPATVKKVVNYLPRVGIGTSFGLPQT 2146
Query: 775 GQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFP 954
+ S Q L ++TQRW+ EISNF+YLM LNT+AGR+YNDL QYPVFP
Sbjct: 2147 RRISLASPRQ-------LFKASNMTQRWQHREISNFEYLMFLNTIAGRTYNDLNQYPVFP 2199
Query: 955 WILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHY 1134
W++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED + P +HYGTHY
Sbjct: 2200 WVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHY 2257
Query: 1135 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEF 1314
S+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + S+ + +D+KELIPEF
Sbjct: 2258 STASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRN-SQRDTSDIKELIPEF 2316
Query: 1315 FYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEW 1494
+YL E N NN++LG +GT + DV LPPWAK EF+R++R ALE ++VS LH+W
Sbjct: 2317 YYLSEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALESEFVSCQLHQW 2375
Query: 1495 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK 1674
IDLIFGYKQQGP AV A+NVF++L YEG V++ +I DP+ A I +FGQ P QL
Sbjct: 2376 IDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLI 2435
Query: 1675 KPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVCTD 1851
+PHPP+ + + P +D+ + L+ PS +PV + + T
Sbjct: 2436 EPHPPR---------GSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAT- 2485
Query: 1852 KGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYESDKAVTVYEC 1989
++ V N++ W+ A A ++ G + + +
Sbjct: 2486 PAVITVTANRLFAMNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQS 2545
Query: 1990 LSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATA 2169
+ Q N +++ G W+ T L Q + GH D VTC T
Sbjct: 2546 IQVHSQCFVITSDNRYILLCG-------FWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTR 2598
Query: 2170 SLAY----HIIVSGSRDRTCIIWDLN 2235
S +Y I+SGSRD T ++W N
Sbjct: 2599 SESYIGGNCYILSGSRDATLLLWYWN 2624
>ref|XP_002691798.1| PREDICTED: neurobeachin [Bos taurus].
Length = 2856
Score = 357 bits (916), Expect = 4e-98
Identities = 220/562 (39%), Positives = 315/562 (56%), Gaps = 18/562 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF--QKGIRNKVYQRFLAVVPSLTDSSES 768
+ +I+ V RRYLLQ A+EVF + + + F Q ++ VY +P + +
Sbjct: 2119 FSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYS-----LPRVGVGTSY 2173
Query: 769 VSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPV 948
Q S+ L + ++TQRW+R EISNF+YLM LNT+AGR+YNDL QYPV
Sbjct: 2174 GLPQARRISLATPRQLYKS----SNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPV 2229
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGT 1128
FPW+L +Y+SEE+DLT P FR+L+KP+GA +R Y +RY+ WED ++P YHY T
Sbjct: 2230 FPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWED--DQSPPYHYNT 2287
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS+A S+LVR+EPFT FL G FD +R F SV +W S+ + +DVKELIP
Sbjct: 2288 HYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPNRTFSSVARSW-RTSQRDTSDVKELIP 2346
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EF+YLPE NSN ++LG +++ + DV LPPWAK P +F+R++R ALE ++VS LH
Sbjct: 2347 EFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAK-KPEDFVRINRMALESEFVSCQLH 2405
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDL+FGYKQ+GP AV A+NVFH+L YEG V++ +I DP+ A I NFGQ P QL
Sbjct: 2406 QWIDLVFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQL 2465
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVC 1845
+PHPP+ L + P D++ + L+ PS +PV + +
Sbjct: 2466 LIEPHPPRSSAMHL----CFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL- 2520
Query: 1846 TDKGILAVEQNKVLIPPTWNKTF----AWGYADLSCRLGTYESDKAVTVYECLSEWGQIL 2013
T ++ V +++ W+ T A GY+ E D + +++ QI
Sbjct: 2521 TIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNK-RQIT 2579
Query: 2014 CAICPNPKL-----VITGGTSTV-VC-VWEMGTSKEKARTLTLKQALLGHTDTVTCATAS 2172
+ + ++ V+T + +C W+ T L Q + GH D VTC S
Sbjct: 2580 DLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARS 2639
Query: 2173 LAY----HIIVSGSRDRTCIIW 2226
+Y IVSGSRD T ++W
Sbjct: 2640 ESYIGGDCYIVSGSRDATLLLW 2661
>ref|XP_002697156.1| PREDICTED: neurobeachin-like 2 [Bos taurus].
Length = 2717
Score = 320 bits (819), Expect = 7e-87
Identities = 244/731 (33%), Positives = 334/731 (45%), Gaps = 54/731 (7%)
Frame = +1
Query: 268 QEQLQDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGKEH 447
+E +DQ+ E E + A L E E + C V + GLL +H
Sbjct: 1880 EELQEDQLGEDELAALETPLEAA---ELDEQHENLVLSAECQLVTVVAVVPGLLEVTTQH 1936
Query: 448 FYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHKRR 627
Y DG + + E + + P+ ++EVH RR
Sbjct: 1937 VYFYDG----SAERVETEEGIGHDFRRPLA---------------------QLREVHLRR 1971
Query: 628 YLLQPIAVEVFSGDGRNYLLAFQ---KGIRNKVYQRFLAVVPSLTDSSESVSGQ------ 780
+ L+ A+E+F D NY L F G PSL V Q
Sbjct: 1972 FNLRRSALELFFIDQANYFLNFPCKTGGAAASSPSPVPRPQPSLIPPHTQVRNQVYSWLL 2031
Query: 781 --RPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFP 954
RP T S ++ +TQ+W + EISNF+YLM LNT+AGR+YNDL QYPVFP
Sbjct: 2032 RLRPPTQGYLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFP 2091
Query: 955 WILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHY 1134
W+L DY S +DL+NP FR+L+KP+G + K++Y+ +EDP G +HYGTHY
Sbjct: 2092 WVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVKEKYESFEDPAGTIDKFHYGTHY 2151
Query: 1135 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEF 1314
S+A V YL+R+EPFT + ++LQ G A R + +
Sbjct: 2152 SNAAGVMHYLIRVEPFTSLHVQLQSGRCGGAGRWSRQLTQP------------------- 2192
Query: 1315 FYLPEFLFNSNNFDLGCKQ-NGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHE 1491
+ FDLGC Q K+GDV+LPPWA P +FI+ HR ALE +YVSAHLHE
Sbjct: 2193 --------SVPGFDLGCLQLTNEKVGDVVLPPWA-SSPEDFIQQHRRALESEYVSAHLHE 2243
Query: 1492 WIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLF 1671
WIDLIFGYKQ+GPAA EA+NVF++ YEG VD+ + D + A G I+NFGQ P QL
Sbjct: 2244 WIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDQVADERERKALEGIISNFGQTPCQLL 2303
Query: 1672 KKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSLTPVKELKEPVGQIVCTD 1851
K+PHP +RL+ + A + T+ F HL L+ V P+
Sbjct: 2304 KEPHP-----ARLSVEEAAQRLARLDTNSPSIFQHLGQLKAFFAEVISDGVPL------- 2351
Query: 1852 KGILAVEQNKVLIPPTWNKTF-AWGYADL------SCRLGTYE---SDKAVTVYECLSE- 1998
+LA L+P +F G ADL S LGT+ D+ ++ Y S+
Sbjct: 2352 --VLA------LVPHRQPHSFITQGSADLLVTVSASGLLGTHSWLPYDRNISNYFSFSKD 2403
Query: 1999 ---------------W-------GQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKART 2112
W GQ L A+ P+ KL+ +GG W+
Sbjct: 2404 PTMGNPKMQRLLSGPWVPGSGVSGQAL-AVSPDGKLLFSGGH------WDGSLRVTALPR 2456
Query: 2113 LTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQ---------LRG 2265
L L H D VTC ++SGSRD TC++W L + + L+ L G
Sbjct: 2457 GRLLSQLRCHLDVVTCLALDTCGIYLISGSRDTTCMVWRLMQQNGLSMGLASKPVQILYG 2516
Query: 2266 HRAPVSALCIN 2298
H A VS + I+
Sbjct: 2517 HEAAVSCVAIS 2527
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 122,405,858
Number of extensions: 3322506
Number of successful extensions: 15842
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 15319
Number of HSP's successfully gapped: 62
Length of query: 1106
Length of database: 17,681,374
Length adjustment: 113
Effective length of query: 993
Effective length of database: 13,942,430
Effective search space: 13844832990
Effective search space used: 13844832990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000728
(3320 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544963.2| PREDICTED: similar to WD repeat and FYVE domain... 2126 0.0
Alignment gi|XP_859566.1| PREDICTED: similar to WD repeat and FYVE domain... 2100 0.0
Alignment gi|XP_543897.2| PREDICTED: similar to WD repeat and FYVE domain... 740 0.0
Alignment gi|XP_536337.2| PREDICTED: similar to lysosomal trafficking reg... 424 e-118
Alignment gi|XP_541900.2| PREDICTED: similar to CG1332-PA [Canis familiar... 377 e-104
Alignment gi|XP_853523.1| PREDICTED: similar to LPS-responsive vesicle tr... 365 e-100
Alignment gi|XP_867504.1| PREDICTED: similar to LPS-responsive vesicle tr... 365 e-100
Alignment gi|XP_532687.2| PREDICTED: similar to LPS-responsive vesicle tr... 365 e-100
Alignment gi|XP_858318.1| PREDICTED: similar to neurobeachin isoform 4 [C... 359 1e-98
Alignment gi|XP_534497.2| PREDICTED: similar to neurobeachin isoform 1 [C... 359 1e-98
>ref|XP_544963.2| PREDICTED: similar to WD repeat and FYVE domain containing 3 isoform
1 isoform 1 [Canis familiaris].
Length = 3527
Score = 2126 bits (5508), Expect = 0.0
Identities = 1031/1106 (93%), Positives = 1045/1106 (94%)
Frame = +1
Query: 1 QPETPDDIIPQKKPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEATQQEPEHG 180
QPETPDDIIPQKKPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEA QQEPEHG
Sbjct: 2414 QPETPDDIIPQKKPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEAAQQEPEHG 2473
Query: 181 EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLED 360
EDTIAKVKGLVKPPLKRSRSAPDGGDEE+QEQLQDQ+AEGSS+EEEEKTDNATLLRLLE+
Sbjct: 2474 EDTIAKVKGLVKPPLKRSRSAPDGGDEESQEQLQDQIAEGSSIEEEEKTDNATLLRLLEE 2533
Query: 361 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 540
GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP
Sbjct: 2534 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 2593
Query: 541 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 720
RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY
Sbjct: 2594 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 2653
Query: 721 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 900
QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL
Sbjct: 2654 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 2713
Query: 901 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 1080
NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK
Sbjct: 2714 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 2773
Query: 1081 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 1260
DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW
Sbjct: 2774 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 2833
Query: 1261 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 1440
YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR
Sbjct: 2834 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 2893
Query: 1441 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 1620
VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET
Sbjct: 2894 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 2953
Query: 1621 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSL 1800
ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGD+ G S PPG +SDKIFFHHLDNLRPSL
Sbjct: 2954 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDSMGASAPPGSSSDKIFFHHLDNLRPSL 3013
Query: 1801 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV 1980
TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDK VT+
Sbjct: 3014 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKVVTI 3073
Query: 1981 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTC 2160
YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKA+TLTLKQALLGHTDTVTC
Sbjct: 3074 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKAKTLTLKQALLGHTDTVTC 3133
Query: 2161 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTHI 2340
ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGT+I
Sbjct: 3134 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYI 3193
Query: 2341 HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQXX 2520
HVWSINGNP+VSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQ
Sbjct: 3194 HVWSINGNPIVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVP 3253
Query: 2521 XXXXXXXXXXXXMQEDCPEAQIGXXXXXXXXXXXXXXXXXXXXXPKDTPSQPSSTSHRPR 2700
MQEDCPEAQIG PKD PSQPSSTSHRPR
Sbjct: 3254 ETPAPEPVEVLEMQEDCPEAQIGQEAQDEDSSDSEADEQSTSQDPKDVPSQPSSTSHRPR 3313
Query: 2701 AASCRATATWCNXXXXXXXXXXXXQLSLDERDGFILVNYSEGRARAHLQPPLNHPHPSPV 2880
AASCRA A WC QLSLDE+DGFI VNYSEG+ RAHLQ PLNHPHPSP+
Sbjct: 3314 AASCRAAAVWCTDSGSDDSRRWSDQLSLDEKDGFIFVNYSEGQTRAHLQGPLNHPHPSPI 3373
Query: 2881 EVRNYNRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG 3060
EVRNY+RLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG
Sbjct: 3374 EVRNYSRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG 3433
Query: 3061 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQS 3240
RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRH CRNCGQLFCQKCSRFQS
Sbjct: 3434 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQS 3493
Query: 3241 EIKRLKISSPVRVCQNCYYNLQHERG 3318
EIKRLKISSPVRVCQNCYYNLQHERG
Sbjct: 3494 EIKRLKISSPVRVCQNCYYNLQHERG 3519
>ref|XP_859566.1| PREDICTED: similar to WD repeat and FYVE domain containing 3 isoform
1 isoform 3 [Canis familiaris].
Length = 3509
Score = 2100 bits (5442), Expect = 0.0
Identities = 1019/1094 (93%), Positives = 1033/1094 (94%)
Frame = +1
Query: 37 KPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEATQQEPEHGEDTIAKVKGLVK 216
KPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEA QQEPEHGEDTIAKVKGLVK
Sbjct: 2408 KPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEAAQQEPEHGEDTIAKVKGLVK 2467
Query: 217 PPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCAR 396
PPLKRSRSAPDGGDEE+QEQLQDQ+AEGSS+EEEEKTDNATLLRLLE+GEKIQHMYRCAR
Sbjct: 2468 PPLKRSRSAPDGGDEESQEQLQDQIAEGSSIEEEEKTDNATLLRLLEEGEKIQHMYRCAR 2527
Query: 397 VQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKR 576
VQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKR
Sbjct: 2528 VQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKR 2587
Query: 577 TCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTD 756
TCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTD
Sbjct: 2588 TCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTD 2647
Query: 757 SSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLM 936
SSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLM
Sbjct: 2648 SSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLM 2707
Query: 937 QYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAY 1116
QYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAY
Sbjct: 2708 QYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAY 2767
Query: 1117 HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK 1296
HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK
Sbjct: 2768 HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK 2827
Query: 1297 ELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVS 1476
ELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVS
Sbjct: 2828 ELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVS 2887
Query: 1477 AHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQI 1656
AHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQI
Sbjct: 2888 AHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQI 2947
Query: 1657 PKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSLTPVKELKEPVGQ 1836
PKQLFKKPHPPKRVRSRLNGD+ G S PPG +SDKIFFHHLDNLRPSLTPVKELKEPVGQ
Sbjct: 2948 PKQLFKKPHPPKRVRSRLNGDSMGASAPPGSSSDKIFFHHLDNLRPSLTPVKELKEPVGQ 3007
Query: 1837 IVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQILC 2016
IVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDK VT+YECLSEWGQILC
Sbjct: 3008 IVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKVVTIYECLSEWGQILC 3067
Query: 2017 AICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATASLAYHIIVS 2196
AICPNPKLVITGGTSTVVCVWEMGTSKEKA+TLTLKQALLGHTDTVTCATASLAYHIIVS
Sbjct: 3068 AICPNPKLVITGGTSTVVCVWEMGTSKEKAKTLTLKQALLGHTDTVTCATASLAYHIIVS 3127
Query: 2197 GSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTHIHVWSINGNPVVS 2376
GSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGT+IHVWSINGNP+VS
Sbjct: 3128 GSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYIHVWSINGNPIVS 3187
Query: 2377 VNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQXXXXXXXXXXXXXX 2556
VNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQ
Sbjct: 3188 VNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVPETPAPEPVEVLE 3247
Query: 2557 MQEDCPEAQIGXXXXXXXXXXXXXXXXXXXXXPKDTPSQPSSTSHRPRAASCRATATWCN 2736
MQEDCPEAQIG PKD PSQPSSTSHRPRAASCRA A WC
Sbjct: 3248 MQEDCPEAQIGQEAQDEDSSDSEADEQSTSQDPKDVPSQPSSTSHRPRAASCRAAAVWCT 3307
Query: 2737 XXXXXXXXXXXXQLSLDERDGFILVNYSEGRARAHLQPPLNHPHPSPVEVRNYNRLKPGY 2916
QLSLDE+DGFI VNYSEG+ RAHLQ PLNHPHPSP+EVRNY+RLKPGY
Sbjct: 3308 DSGSDDSRRWSDQLSLDEKDGFIFVNYSEGQTRAHLQGPLNHPHPSPIEVRNYSRLKPGY 3367
Query: 2917 RWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRGRVFSWSVSDQPG 3096
RWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRGRVFSWSVSDQPG
Sbjct: 3368 RWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRGRVFSWSVSDQPG 3427
Query: 3097 RSAADHWVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQSEIKRLKISSPVR 3276
RSAADHWVKDEGGDSCSGCSVRFSLTERRH CRNCGQLFCQKCSRFQSEIKRLKISSPVR
Sbjct: 3428 RSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVR 3487
Query: 3277 VCQNCYYNLQHERG 3318
VCQNCYYNLQHERG
Sbjct: 3488 VCQNCYYNLQHERG 3501
>ref|XP_543897.2| PREDICTED: similar to WD repeat and FYVE domain containing 3 [Canis
familiaris].
Length = 3176
Score = 740 bits (1911), Expect = 0.0
Identities = 366/738 (49%), Positives = 499/738 (67%), Gaps = 12/738 (1%)
Frame = +1
Query: 328 DNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIET 507
+ +L+ L D EK+ Y VQG SEG+LLFG +HFY+ + FT++ ++
Sbjct: 2389 ERQVILQELLDHEKVTQKYSLVIVQGHLVSEGVLLFGHQHFYICENFTLSPVGDVYCTRH 2448
Query: 508 LPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLL 687
N+ +P I + S + +C +Y + E+ + R+LLQ IA+E+F +G + L
Sbjct: 2449 CLSNISDPFIFNMCSKDRSSDQYSCQSHSYGQLSELRQARFLLQDIALELFFQNGYSKFL 2508
Query: 688 AFQKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERG 867
F R+KV++ F + PSL + ++ N GS ++++ QRW++
Sbjct: 2509 VFHNNDRSKVFKSFCSFQPSL--KGKGITEDPLNLRRYPGS--------DRTMLQRWQKR 2558
Query: 868 EISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTD 1047
+ISNF+YLM+LNT+AGR+YND MQYPVFPW+LADY S+ ++L NPKTFR+L+KPMGAQT
Sbjct: 2559 DISNFEYLMYLNTVAGRTYNDYMQYPVFPWVLADYTSQTLNLMNPKTFRDLSKPMGAQTK 2618
Query: 1048 ERLAQYKKRYKDWEDPNGE-TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDL 1224
ER ++ +R+K+ E G+ T HY THYSSA+IVASYLVRM P+TQ F LQGG FD+
Sbjct: 2619 ERKLKFIQRFKEVEKTEGDMTVQCHYYTHYSSAIIVASYLVRMPPYTQAFCSLQGGSFDV 2678
Query: 1225 ADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILP 1404
ADRMFHSV+ W SAS+ NM+DV+EL PEFFYLPEFL N N + GC Q+GT LGDV LP
Sbjct: 2679 ADRMFHSVKNTWESASRDNMSDVRELTPEFFYLPEFLINCNGVEFGCMQDGTALGDVQLP 2738
Query: 1405 PWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQV 1584
PWA GDPR+FI +HR+ALE D+VSA+LH WIDLIFGYKQQG AAVEAVN FH FY ++
Sbjct: 2739 PWADGDPRKFISLHRQALESDFVSANLHHWIDLIFGYKQQGSAAVEAVNTFHPYFYGDKM 2798
Query: 1585 DIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTS-DK 1761
D+ +I+DPL + +GF++NFGQ+PKQLF KPHP + V + + + VP S +
Sbjct: 2799 DLSSISDPLIRSTILGFVSNFGQVPKQLFTKPHPARTVAGKPSPGKDAV-VPASLPSHPQ 2857
Query: 1762 IFFHHLDNLRPSLTPVKEL----------KEPVGQIVCTDKGILAVEQNKVLIPPTWNKT 1911
FF++L L+PS VK++ K +G IV T+K ILAVE+NKVL+PP WN+T
Sbjct: 2858 PFFYNLQALKPSQVTVKDMYLFSLGSESPKGAIGHIVPTEKTILAVEKNKVLLPPLWNRT 2917
Query: 1912 FAWGYADLSCRLGTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGT 2091
F+WG+ D SC LG Y SDK + +E L+ WG+ LC +CP P ++IT G STVVCVWE+
Sbjct: 2918 FSWGFDDFSCCLGNYGSDKIIMTFENLAAWGRCLCTVCPTPTMIITSGASTVVCVWELSI 2977
Query: 2092 SKEKARTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHR 2271
+K + R+L LKQAL GHT VTC AS+ + ++VSGS+D TCI+WDL+ L+ + +L H+
Sbjct: 2978 AKGRPRSLHLKQALYGHTQAVTCLAASVIFSLLVSGSQDCTCILWDLDHLTHVARLPTHQ 3037
Query: 2272 APVSALCINELTGDIVSCAGTHIHVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQ 2451
+SAL I++++G IVSCAG H+ +W++NG P+ S+ T G I CC V E WDT
Sbjct: 3038 EGISALAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGAITCCYVMEGPAWDTN 3097
Query: 2452 NVIVTGHSDGVVRFWRME 2505
+VI+TG DG+VR WR E
Sbjct: 3098 HVIITGSQDGMVRIWRTE 3115
>ref|XP_536337.2| PREDICTED: similar to lysosomal trafficking regulator isoform 1
[Canis familiaris].
Length = 3800
Score = 424 bits (1090), Expect = e-118
Identities = 283/807 (35%), Positives = 414/807 (51%), Gaps = 64/807 (7%)
Frame = +1
Query: 268 QEQLQDQVAEGSSMEEEEKTDNA--TLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGK 441
+++ +D V S E+KT ++ + ++ E I+ RC V + G LL GK
Sbjct: 2977 RQKSEDVVKPPLSFLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGK 3036
Query: 442 EHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHK 621
Y ++ + + + QG +L+ + YE+IKEVHK
Sbjct: 3037 CGMYFVE------------------DNASDTVESSSLQG--ELEPASFSWTYEEIKEVHK 3076
Query: 622 RRYLLQPIAVEVFSGDGRNYLLAFQKG-IRNKVYQRFLAVVPSLTDSSESVSGQRPNTSV 798
R + L+ AVE+F +GR LLAF +R+ VY L + PN +
Sbjct: 3077 RWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSIL-------------TNNLPNL-L 3122
Query: 799 EQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDS 978
E G+ ++T W G+I+NF+YL HLN AGRS+NDLMQYPVFP+ILADY S
Sbjct: 3123 EYGN--------INALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVS 3174
Query: 979 EEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWE----------DPNGETPAYHYGT 1128
E +DL++P +RNL+KP+ Q E+ +Y YK E DP YHYG+
Sbjct: 3175 ETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGS 3234
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS++ V +LVRM PFT++FL Q FD+ DR FHS W +S +M DVKELIP
Sbjct: 3235 HYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIP 3294
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EFFYLPEFL N FD G +QNG ++ V LPPWA+ DPR FI +HR+ALE DYVS ++
Sbjct: 3295 EFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNIC 3354
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDL+FGYKQ+G A+V+A+NVFH Y G +D+ + DP++ A I +GQ P+QL
Sbjct: 3355 QWIDLVFGYKQKGKASVQAINVFHPATYFG-MDVSAVEDPVQRRALETMIKTYGQTPRQL 3413
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR----PS-LTPVKELK--EP 1827
F+ H R S+LN + + G F + ++ PS L+ +K LK E
Sbjct: 3414 FQSAH-ASRPGSKLNLEGE-LPAAVGLLVQFAFRETREQVKEITYPSPLSWIKGLKWGEY 3471
Query: 1828 VGQ------IVC---------------TDKGILAVEQNKVLIPP---------------T 1899
VG +VC + I + QN L+
Sbjct: 3472 VGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSQNFCLLMTYSKEQGVRSMNSTDIQ 3531
Query: 1900 WNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVW 2079
W+ +WGYAD RL + +S+ + + ++ CA P+ + TG V+ +
Sbjct: 3532 WSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAY 3591
Query: 2080 EMGTSKEKARTLTLKQA--LLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLT 2253
+ + ++ L GHT+ +T Y I++S SRD TCIIWDLN+L ++
Sbjct: 3592 ANRFTSSTPSEIEMESQIHLYGHTEEITSLFVCKPYSIMISVSRDGTCIIWDLNRLCYVQ 3651
Query: 2254 QLRGHRAPVSALCINELTGDIVSC-----AGTHIHVWSINGNPVVSVNTFTGRSQQIVC- 2415
L GH++PV+A+ +E TGDI + G+ + +W++NG+ V V+ ++I+C
Sbjct: 3652 SLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWTVNGDLVGHVH-----CREIICS 3706
Query: 2416 CCVSEMNEWDTQNVIVTGHSDGVVRFW 2496
S E + NVI G +G+VR W
Sbjct: 3707 VAFSNQPEGVSINVIAGGLENGIVRLW 3733
>ref|XP_541900.2| PREDICTED: similar to CG1332-PA [Canis familiaris].
Length = 2305
Score = 377 bits (967), Expect = e-104
Identities = 239/575 (41%), Positives = 318/575 (55%), Gaps = 38/575 (6%)
Frame = +1
Query: 688 AFQKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERG 867
AFQ +RN++Y L + P S S Q + + SGL TQ+W +
Sbjct: 1557 AFQ--VRNQMYSLLLRLRPPAQGYLSSRSPQE----MLRASGL----------TQKWVQR 1600
Query: 868 EISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTD 1047
EISNF+YLM LNT+AGR+YNDL QYPVFPW+L DY S +DL+NP FR+L+KP+G
Sbjct: 1601 EISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNP 1660
Query: 1048 ERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLA 1227
+ +++Y+ +EDP G +HYGTHYS+A V YL+R+EPFT + ++LQ G FD +
Sbjct: 1661 KHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCS 1720
Query: 1228 DRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQ-NGTKLGDVILP 1404
DR FHSV AW A + ADVKELIPEFFY P+FL N N FDLGC Q K+GDV+LP
Sbjct: 1721 DRQFHSVAAAW-QARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLP 1779
Query: 1405 PWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQV 1584
PWA P +FI+ HR+ALE +YVSAHLHEWIDLIFGYKQ+GPAA EA+NVF++ YEG V
Sbjct: 1780 PWA-SSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAV 1838
Query: 1585 DIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKI 1764
D+ ++ D + A G I+NFGQ P QL K+PHP +RL+ + A + T+
Sbjct: 1839 DLDHVVDERERKALEGIISNFGQTPCQLLKEPHP-----ARLSAEEAAQRLARLDTNSPS 1893
Query: 1765 FFHHLDNLRPSLTPVKELKEPVGQIVCTDKG------------ILAVEQNKVLIPPTW-- 1902
F HLD L+ V P+ V + ++ V + +L W
Sbjct: 1894 IFQHLDQLKAFFAEVISEGVPLVLAVVPHRQSHSFTIQGSSDLLVTVSASGLLGIHNWLP 1953
Query: 1903 -----------NKTFAWGYADLSCRL-GTYESDKAVTVYECLSEWGQILCAICPNPKLVI 2046
NK G + L G + + V+ GQ L A+ P+ KL+
Sbjct: 1954 YDRNINNYFSFNKDPTIGNPKMQRLLSGPWVPESGVS--------GQAL-AVAPDAKLLF 2004
Query: 2047 TGGTSTVVCVWEMGTSKEKA--RTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCI 2220
+GG W+ G+ + A R LKQ L H D VTC ++SGSRD TC+
Sbjct: 2005 SGGH------WD-GSLRVTALPRGKLLKQ-LNRHLDVVTCLALDTCGIYLISGSRDTTCM 2056
Query: 2221 IWDLNKLSFLT---------QLRGHRAPVSALCIN 2298
+W L + L+ L GH A VS + IN
Sbjct: 2057 VWRLLQEGGLSVGLASKPVQVLYGHEAAVSCVAIN 2091
>ref|XP_853523.1| PREDICTED: similar to LPS-responsive vesicle trafficking, beach and
anchor containing isoform 2 [Canis familiaris].
Length = 2863
Score = 365 bits (937), Expect = e-100
Identities = 218/566 (38%), Positives = 309/566 (54%), Gaps = 19/566 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + + F K +L V T +
Sbjct: 2135 FTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGIGTSFGLPQT 2194
Query: 775 GQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFP 954
+ S Q L ++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFP
Sbjct: 2195 RRISLASPRQ-------LFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFP 2247
Query: 955 WILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHY 1134
W++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED + P +HYGTHY
Sbjct: 2248 WVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHY 2305
Query: 1135 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEF 1314
S+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + + + +D+KELIPEF
Sbjct: 2306 STASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNCQR-DTSDIKELIPEF 2364
Query: 1315 FYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEW 1494
+YLPE N NN++LG +GT + DV LPPWAK EF+R++R ALE ++VS LH+W
Sbjct: 2365 YYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALESEFVSCQLHQW 2423
Query: 1495 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK 1674
IDLIFGYKQQGP AV ++NVF++L YEG V++ +I DP+ A I +FGQ P QL
Sbjct: 2424 IDLIFGYKQQGPEAVRSLNVFYYLTYEGAVNLNSIADPILREAVEAQIRSFGQTPSQLLI 2483
Query: 1675 KPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVCTD 1851
+PHPP+ + + V P +D+ + L+ PS +PV + + T
Sbjct: 2484 EPHPPR---------GSAMQVSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAT- 2533
Query: 1852 KGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYESDKAVTVYEC 1989
++ V N++ W+ A A ++ G + + +
Sbjct: 2534 PAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQS 2593
Query: 1990 LSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATA 2169
+ Q N ++I G W+ T L Q + GH D VTC T
Sbjct: 2594 IQVHSQCFVITSDNRYILICG-------FWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTR 2646
Query: 2170 SLAY----HIIVSGSRDRTCIIWDLN 2235
S +Y I+SGSRD T ++W N
Sbjct: 2647 SESYIGGNCYILSGSRDATLLLWYWN 2672
>ref|XP_867504.1| PREDICTED: similar to LPS-responsive vesicle trafficking, beach and
anchor containing isoform 5 [Canis familiaris].
Length = 743
Score = 365 bits (937), Expect = e-100
Identities = 218/566 (38%), Positives = 309/566 (54%), Gaps = 19/566 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + + F K +L V T +
Sbjct: 15 FTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGIGTSFGLPQT 74
Query: 775 GQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFP 954
+ S Q L ++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFP
Sbjct: 75 RRISLASPRQ-------LFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFP 127
Query: 955 WILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHY 1134
W++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED + P +HYGTHY
Sbjct: 128 WVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHY 185
Query: 1135 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEF 1314
S+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + + + +D+KELIPEF
Sbjct: 186 STASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNCQR-DTSDIKELIPEF 244
Query: 1315 FYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEW 1494
+YLPE N NN++LG +GT + DV LPPWAK EF+R++R ALE ++VS LH+W
Sbjct: 245 YYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALESEFVSCQLHQW 303
Query: 1495 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK 1674
IDLIFGYKQQGP AV ++NVF++L YEG V++ +I DP+ A I +FGQ P QL
Sbjct: 304 IDLIFGYKQQGPEAVRSLNVFYYLTYEGAVNLNSIADPILREAVEAQIRSFGQTPSQLLI 363
Query: 1675 KPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVCTD 1851
+PHPP+ + + V P +D+ + L+ PS +PV + + T
Sbjct: 364 EPHPPR---------GSAMQVSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAT- 413
Query: 1852 KGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYESDKAVTVYEC 1989
++ V N++ W+ A A ++ G + + +
Sbjct: 414 PAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQS 473
Query: 1990 LSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATA 2169
+ Q N ++I G W+ T L Q + GH D VTC T
Sbjct: 474 IQVHSQCFVITSDNRYILICG-------FWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTR 526
Query: 2170 SLAY----HIIVSGSRDRTCIIWDLN 2235
S +Y I+SGSRD T ++W N
Sbjct: 527 SESYIGGNCYILSGSRDATLLLWYWN 552
>ref|XP_532687.2| PREDICTED: similar to LPS-responsive vesicle trafficking, beach and
anchor containing isoform 1 [Canis familiaris].
Length = 2852
Score = 365 bits (937), Expect = e-100
Identities = 218/566 (38%), Positives = 309/566 (54%), Gaps = 19/566 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + + F K +L V T +
Sbjct: 2124 FTEIRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNYLPRVGIGTSFGLPQT 2183
Query: 775 GQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFP 954
+ S Q L ++TQRW+ EISNF+YLM LNT+AGRSYNDL QYPVFP
Sbjct: 2184 RRISLASPRQ-------LFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFP 2236
Query: 955 WILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHY 1134
W++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED + P +HYGTHY
Sbjct: 2237 WVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWED--DQVPKFHYGTHY 2294
Query: 1135 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEF 1314
S+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + + + +D+KELIPEF
Sbjct: 2295 STASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNCQR-DTSDIKELIPEF 2353
Query: 1315 FYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEW 1494
+YLPE N NN++LG +GT + DV LPPWAK EF+R++R ALE ++VS LH+W
Sbjct: 2354 YYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALESEFVSCQLHQW 2412
Query: 1495 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK 1674
IDLIFGYKQQGP AV ++NVF++L YEG V++ +I DP+ A I +FGQ P QL
Sbjct: 2413 IDLIFGYKQQGPEAVRSLNVFYYLTYEGAVNLNSIADPILREAVEAQIRSFGQTPSQLLI 2472
Query: 1675 KPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVCTD 1851
+PHPP+ + + V P +D+ + L+ PS +PV + + T
Sbjct: 2473 EPHPPR---------GSAMQVSPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAT- 2522
Query: 1852 KGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYESDKAVTVYEC 1989
++ V N++ W+ A A ++ G + + +
Sbjct: 2523 PAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHRRQITDLLDQS 2582
Query: 1990 LSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATA 2169
+ Q N ++I G W+ T L Q + GH D VTC T
Sbjct: 2583 IQVHSQCFVITSDNRYILICG-------FWDKSFRVYSTDTGKLIQVVFGHWDVVTCLTR 2635
Query: 2170 SLAY----HIIVSGSRDRTCIIWDLN 2235
S +Y I+SGSRD T ++W N
Sbjct: 2636 SESYIGGNCYILSGSRDATLLLWYWN 2661
>ref|XP_858318.1| PREDICTED: similar to neurobeachin isoform 4 [Canis familiaris].
Length = 2920
Score = 359 bits (921), Expect = 1e-98
Identities = 222/562 (39%), Positives = 315/562 (56%), Gaps = 18/562 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF--QKGIRNKVYQRFLAVVPSLTDSSES 768
+ +I+ V RRYLLQ A+EVF + + + F Q ++ VY +P + +
Sbjct: 2183 FSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYS-----LPRVGVGTSY 2237
Query: 769 VSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPV 948
Q S+ L + ++TQRW+R EISNF+YLM LNT+AGR+YNDL QYPV
Sbjct: 2238 GLPQARRISLATPRQLYKS----SNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPV 2293
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGT 1128
FPW+L +Y+SEE+DLT P FR+L+KP+GA +R Y +RY+ WED ++P YHY T
Sbjct: 2294 FPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWED--DQSPPYHYNT 2351
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS+A S+LVR+EPFT FL G FD DR F SV +W S+ + +DVKELIP
Sbjct: 2352 HYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSW-RTSQRDTSDVKELIP 2410
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EF+YLPE NSN ++LG +++ + DV LPPWAK P +F+R++R ALE ++VS LH
Sbjct: 2411 EFYYLPEMFVNSNGYNLGVREDEVVVNDVGLPPWAK-KPEDFVRINRMALESEFVSCQLH 2469
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDLIFGYKQ+GP AV A+NVFH+L YEG V++ +I DP+ A I NFGQ P QL
Sbjct: 2470 QWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQL 2529
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVC 1845
+PHPP+ L + P D++ + L+ PS +PV + +
Sbjct: 2530 LIEPHPPRSSAMHL----CFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL- 2584
Query: 1846 TDKGILAVEQNKVLIPPTWNKTF----AWGYADLSCRLGTYESDKAVTVYECLSEWGQIL 2013
T ++ V +++ W+ T A GY+ E D + +++ QI
Sbjct: 2585 TIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNK-RQIT 2643
Query: 2014 CAICPNPKL-----VITGGTSTV-VC-VWEMGTSKEKARTLTLKQALLGHTDTVTCATAS 2172
+ + ++ V+T + +C W+ T L Q + GH D VTC S
Sbjct: 2644 DLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARS 2703
Query: 2173 LAY----HIIVSGSRDRTCIIW 2226
+Y IVSGSRD T ++W
Sbjct: 2704 ESYIGGDCYIVSGSRDATLLLW 2725
>ref|XP_534497.2| PREDICTED: similar to neurobeachin isoform 1 [Canis familiaris].
Length = 2949
Score = 359 bits (921), Expect = 1e-98
Identities = 222/562 (39%), Positives = 315/562 (56%), Gaps = 18/562 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF--QKGIRNKVYQRFLAVVPSLTDSSES 768
+ +I+ V RRYLLQ A+EVF + + + F Q ++ VY +P + +
Sbjct: 2212 FSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYS-----LPRVGVGTSY 2266
Query: 769 VSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPV 948
Q S+ L + ++TQRW+R EISNF+YLM LNT+AGR+YNDL QYPV
Sbjct: 2267 GLPQARRISLATPRQLYKS----SNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPV 2322
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGT 1128
FPW+L +Y+SEE+DLT P FR+L+KP+GA +R Y +RY+ WED ++P YHY T
Sbjct: 2323 FPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWED--DQSPPYHYNT 2380
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS+A S+LVR+EPFT FL G FD DR F SV +W S+ + +DVKELIP
Sbjct: 2381 HYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSW-RTSQRDTSDVKELIP 2439
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EF+YLPE NSN ++LG +++ + DV LPPWAK P +F+R++R ALE ++VS LH
Sbjct: 2440 EFYYLPEMFVNSNGYNLGVREDEVVVNDVGLPPWAK-KPEDFVRINRMALESEFVSCQLH 2498
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDLIFGYKQ+GP AV A+NVFH+L YEG V++ +I DP+ A I NFGQ P QL
Sbjct: 2499 QWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQL 2558
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVC 1845
+PHPP+ L + P D++ + L+ PS +PV + +
Sbjct: 2559 LIEPHPPRSSAMHL----CFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL- 2613
Query: 1846 TDKGILAVEQNKVLIPPTWNKTF----AWGYADLSCRLGTYESDKAVTVYECLSEWGQIL 2013
T ++ V +++ W+ T A GY+ E D + +++ QI
Sbjct: 2614 TIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNK-RQIT 2672
Query: 2014 CAICPNPKL-----VITGGTSTV-VC-VWEMGTSKEKARTLTLKQALLGHTDTVTCATAS 2172
+ + ++ V+T + +C W+ T L Q + GH D VTC S
Sbjct: 2673 DLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARS 2732
Query: 2173 LAY----HIIVSGSRDRTCIIW 2226
+Y IVSGSRD T ++W
Sbjct: 2733 ESYIGGDCYIVSGSRDATLLLW 2754
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 127,628,736
Number of extensions: 3424784
Number of successful extensions: 17142
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 16404
Number of HSP's successfully gapped: 91
Length of query: 1106
Length of database: 18,874,504
Length adjustment: 113
Effective length of query: 993
Effective length of database: 15,107,536
Effective search space: 15001783248
Effective search space used: 15001783248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000728
(3320 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055806.2| WD repeat and FYVE domain-containing protein 3 ... 2122 0.0
Alignment gi|NP_065996.1| WD repeat- and FYVE domain-containing protein 4... 744 0.0
Alignment gi|NP_000072.2| lysosomal-trafficking regulator [Homo sapiens]. 413 e-115
Alignment gi|NP_001107604.1| neurobeachin-like protein 1 [Homo sapiens]. 395 e-109
Alignment gi|NP_055990.1| neurobeachin-like protein 2 [Homo sapiens]. 391 e-108
Alignment gi|NP_001186211.2| lipopolysaccharide-responsive and beige-like... 365 e-100
Alignment gi|NP_006717.2| lipopolysaccharide-responsive and beige-like an... 365 e-100
Alignment gi|NP_001191126.1| neurobeachin isoform 2 [Homo sapiens]. 359 8e-99
Alignment gi|NP_056493.3| neurobeachin isoform 1 [Homo sapiens]. 359 8e-99
Alignment gi|NP_003571.2| protein FAN isoform 1 [Homo sapiens]. 294 4e-79
>ref|NP_055806.2| WD repeat and FYVE domain-containing protein 3 [Homo sapiens].
Length = 3526
Score = 2122 bits (5498), Expect = 0.0
Identities = 1029/1106 (93%), Positives = 1048/1106 (94%)
Frame = +1
Query: 1 QPETPDDIIPQKKPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEATQQEPEHG 180
QPETPDDI PQKKPARYRRA+SYDSKEYYMRLASGNPAIVQDAIVESSEGEA QQEPEHG
Sbjct: 2414 QPETPDDI-PQKKPARYRRAVSYDSKEYYMRLASGNPAIVQDAIVESSEGEAAQQEPEHG 2472
Query: 181 EDTIAKVKGLVKPPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLED 360
EDTIAKVKGLVKPPLKRSRSAPDGGDEE QEQLQDQ+AEGSS+EEEEKTDNATLLRLLE+
Sbjct: 2473 EDTIAKVKGLVKPPLKRSRSAPDGGDEENQEQLQDQIAEGSSIEEEEKTDNATLLRLLEE 2532
Query: 361 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 540
GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP
Sbjct: 2533 GEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIP 2592
Query: 541 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 720
RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY
Sbjct: 2593 RGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVY 2652
Query: 721 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 900
QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL
Sbjct: 2653 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 2712
Query: 901 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 1080
NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK
Sbjct: 2713 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 2772
Query: 1081 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 1260
DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW
Sbjct: 2773 DWEDPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAW 2832
Query: 1261 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 1440
YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR
Sbjct: 2833 YSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIR 2892
Query: 1441 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 1620
VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET
Sbjct: 2893 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 2952
Query: 1621 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSL 1800
ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISV PG TSDKIFFHHLDNLRPSL
Sbjct: 2953 ATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVLPGSTSDKIFFHHLDNLRPSL 3012
Query: 1801 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTV 1980
TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKA+TV
Sbjct: 3013 TPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAMTV 3072
Query: 1981 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTC 2160
YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKA+T+TLKQALLGHTDTVTC
Sbjct: 3073 YECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKAKTVTLKQALLGHTDTVTC 3132
Query: 2161 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTHI 2340
ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGT+I
Sbjct: 3133 ATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYI 3192
Query: 2341 HVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQXX 2520
HVWSINGNP+VSVNTFTGRSQQI+CCC+SEMNEWDTQNVIVTGHSDGVVRFWRMEFLQ
Sbjct: 3193 HVWSINGNPIVSVNTFTGRSQQIICCCMSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVP 3252
Query: 2521 XXXXXXXXXXXXMQEDCPEAQIGXXXXXXXXXXXXXXXXXXXXXPKDTPSQPSSTSHRPR 2700
MQEDCPEAQIG PKDTPSQPSSTSHRPR
Sbjct: 3253 ETPAPEPAEVLEMQEDCPEAQIGQEAQDEDSSDSEADEQSISQDPKDTPSQPSSTSHRPR 3312
Query: 2701 AASCRATATWCNXXXXXXXXXXXXQLSLDERDGFILVNYSEGRARAHLQPPLNHPHPSPV 2880
AASCRATA WC QLSLDE+DGFI VNYSEG+ RAHLQ PL+HPHP+P+
Sbjct: 3313 AASCRATAAWCTDSGSDDSRRWSDQLSLDEKDGFIFVNYSEGQTRAHLQGPLSHPHPNPI 3372
Query: 2881 EVRNYNRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRG 3060
EVRNY+RLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAE+TALG+SKDHSRILVGDSRG
Sbjct: 3373 EVRNYSRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEVTALGISKDHSRILVGDSRG 3432
Query: 3061 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQS 3240
RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRH CRNCGQLFCQKCSRFQS
Sbjct: 3433 RVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQS 3492
Query: 3241 EIKRLKISSPVRVCQNCYYNLQHERG 3318
EIKRLKISSPVRVCQNCYYNLQHERG
Sbjct: 3493 EIKRLKISSPVRVCQNCYYNLQHERG 3518
>ref|NP_065996.1| WD repeat- and FYVE domain-containing protein 4 [Homo sapiens].
Length = 3184
Score = 744 bits (1922), Expect = 0.0
Identities = 391/851 (45%), Positives = 542/851 (63%), Gaps = 16/851 (1%)
Frame = +1
Query: 1 QPETPDDIIPQKKPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEATQQEPEHG 180
+P +P ++ ++ PAR R+ I S L+SG QD S+ A Q+
Sbjct: 2281 KPCSPWELDWREGPARMRKRIKRLSP--LEALSSGRHKESQDKNDHISQTNAENQD---- 2334
Query: 181 EDTIAKVKGLVKPPLKRSRSAPDG-GDEETQEQLQDQVAEGSSMEE--EEKTDNATLLRL 351
+ L+ + PD G + TQ + E E+ E + +L+
Sbjct: 2335 -----------ELTLREAEGEPDEVGVDCTQLTFFPALHESLHSEDFLELCRERQVILQE 2383
Query: 352 LEDGEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEP 531
L D EK+ + VQG SEG+LLFG +HFY+ + FT++ T ++ N+ +P
Sbjct: 2384 LLDKEKVTQKFSLVIVQGHLVSEGVLLFGHQHFYICENFTLSPTGDVYCTRHCLSNISDP 2443
Query: 532 IIPRGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRN 711
I + S +C +Y D++E+ + R+LLQ IA+E+F +G + L F R+
Sbjct: 2444 FIFNLCSKDRSTDHYSCQCHSYADMRELRQARFLLQDIALEIFFHNGYSKFLVFYNNDRS 2503
Query: 712 KVYQRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYL 891
K ++ F + PSL + S S+ + G ++ + Q+W++ +ISNF+YL
Sbjct: 2504 KAFKSFCSFQPSLKGKATS----EDTLSLRRYPG------SDRIMLQKWQKRDISNFEYL 2553
Query: 892 MHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKK 1071
M+LNT AGR+ ND MQYPVFPW+LADY SE ++L NPK FR+L+KPMGAQT ER ++ +
Sbjct: 2554 MYLNTAAGRTCNDYMQYPVFPWVLADYTSETLNLANPKIFRDLSKPMGAQTKERKLKFIQ 2613
Query: 1072 RYKDWEDPNGE-TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSV 1248
R+K+ E G+ T HY THYSSA+IVASYLVRM PFTQ F LQGG FD+ADRMFHSV
Sbjct: 2614 RFKEVEKTEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHSV 2673
Query: 1249 REAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPR 1428
+ W SAS+ NM+DV+EL PEFFYLPEFL N N + GC Q+GT LGDV LPPWA GDPR
Sbjct: 2674 KSTWESASRENMSDVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADGDPR 2733
Query: 1429 EFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDP 1608
+FI +HR+ALE D+VSA+LH WIDLIFGYKQQGPAAV+AVN+FH FY ++D+ +I DP
Sbjct: 2734 KFISLHRKALESDFVSANLHHWIDLIFGYKQQGPAAVDAVNIFHPYFYGDRMDLSSITDP 2793
Query: 1609 LKETATIGFINNFGQIPKQLFKKPHPPKRVRSR-LNGDNAGISVP-PGCTSDKIFFHHLD 1782
L ++ +GF++NFGQ+PKQLF KPHP + + L G + V PG + FF+ L
Sbjct: 2794 LIKSTILGFVSNFGQVPKQLFTKPHPARTAAGKPLPGKDVSTPVSLPG--HPQPFFYSLQ 2851
Query: 1783 NLRPSLTPVKEL----------KEPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYAD 1932
+LRPS VK++ K +G IV T+K ILAVE+NKVL+PP WN+TF+WG+ D
Sbjct: 2852 SLRPSQVTVKDMYLFSLGSESPKGAIGHIVSTEKTILAVERNKVLLPPLWNRTFSWGFDD 2911
Query: 1933 LSCRLGTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKART 2112
SC LG+Y SDK + +E L+ WG+ LCA+CP+P ++T GTSTVVCVWE+ +K + R
Sbjct: 2912 FSCCLGSYGSDKVLMTFENLAAWGRCLCAVCPSPTTIVTSGTSTVVCVWELSMTKGRPRG 2971
Query: 2113 LTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALC 2292
L L+QAL GHT VTC AS+ + ++VSGS+D TCI+WDL+ L+ +T+L HR +SA+
Sbjct: 2972 LRLRQALYGHTQAVTCLAASVTFSLLVSGSQDCTCILWDLDHLTHVTRLPAHREGISAIT 3031
Query: 2293 INELTGDIVSCAGTHIHVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGH 2472
I++++G IVSCAG H+ +W++NG P+ S+ T G I CCC+ E WDT +I+TG
Sbjct: 3032 ISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGAITCCCLMEGPAWDTSQIIITGS 3091
Query: 2473 SDGVVRFWRME 2505
DG+VR W+ E
Sbjct: 3092 QDGMVRVWKTE 3102
Score = 56.2 bits (134), Expect = 2e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +1
Query: 2845 QPPLNHPHPSPVEVRNYNRLKPGYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSK 3024
+PP P P G++WE+ L +L + A K + +TAL VS+
Sbjct: 3116 EPPAQPPSPR------------GHKWEKNLALSRELDVSIALTGKPSKTSPAVTALAVSR 3163
Query: 3025 DHSRILVGDSRGRVFSWS 3078
+H+++LVGD RGR+F WS
Sbjct: 3164 NHTKLLVGDERGRIFCWS 3181
>ref|NP_000072.2| lysosomal-trafficking regulator [Homo sapiens].
Length = 3801
Score = 413 bits (1061), Expect = e-115
Identities = 281/807 (34%), Positives = 411/807 (50%), Gaps = 64/807 (7%)
Frame = +1
Query: 268 QEQLQDQVAEGSSMEEEEKTDNA--TLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGK 441
+++ +D V S E+KT ++ + ++ E I+ RC V + G LL GK
Sbjct: 2978 RQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGK 3037
Query: 442 EHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHK 621
Y ++ + + + QG +L+ + YE+IKEVHK
Sbjct: 3038 CGMYFVE------------------DNASDTVESSSLQG--ELEPASFSWTYEEIKEVHK 3077
Query: 622 RRYLLQPIAVEVFSGDGRNYLLAFQKG-IRNKVYQRFLAVVPSLTDSSESVSGQRPNTSV 798
R + L+ AVE+F +GR LLAF +R+ VY L + PN +
Sbjct: 3078 RWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHNIL-------------TNNLPNL-L 3123
Query: 799 EQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDS 978
E G+ ++T W G+I+NF+YL HLN AGRS+NDLMQYPVFP+ILADY S
Sbjct: 3124 EYGN--------ITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVS 3175
Query: 979 EEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWE----------DPNGETPAYHYGT 1128
E +DL + +RNL+KP+ Q E+ +Y YK E DP YHYG+
Sbjct: 3176 ETLDLNDLLIYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGS 3235
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS++ V +LVRM PFT++FL Q FD+ DR FHS W +S +M DVKELIP
Sbjct: 3236 HYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIP 3295
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EFFYLPEFL N FD G +QNG ++ V LPPWA+ DPR FI +HR+ALE DYVS ++
Sbjct: 3296 EFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNIC 3355
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDL+FGYKQ+G A+V+A+NVFH Y G +D+ + DP++ A I +GQ P+QL
Sbjct: 3356 QWIDLVFGYKQKGKASVQAINVFHPATYFG-MDVSAVEDPVQRRALETMIKTYGQTPRQL 3414
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR----PS-LTPVKELK--EP 1827
F H R ++LN + + G F + ++ PS L+ +K LK E
Sbjct: 3415 FHMAH-VSRPGAKLNIEGE-LPAAVGLLVQFAFRETREQVKEITYPSPLSWIKGLKWGEY 3472
Query: 1828 VGQ------IVC---------------TDKGILAVEQNKVLIPP---------------T 1899
VG +VC + I + +N L+
Sbjct: 3473 VGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNSTDIQ 3532
Query: 1900 WNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVW 2079
W+ +WGYAD RL + +S+ V + ++ CA P+ + TG V+ +
Sbjct: 3533 WSAILSWGYADNILRLKSKQSEPPVNFIQSSQQYQVTSCAWVPDSCQLFTGSKCGVITAY 3592
Query: 2080 --EMGTSKEKARTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLT 2253
+S + + L GHT+ +T Y I++S SRD TCIIWDLN+L ++
Sbjct: 3593 TNRFTSSTPSEIEMETQIHLYGHTEEITSLFVCKPYSILISVSRDGTCIIWDLNRLCYVQ 3652
Query: 2254 QLRGHRAPVSALCINELTGDIVSC-----AGTHIHVWSINGNPVVSVNTFTGRSQQIVC- 2415
L GH++PV+A+ +E +GDI + G+ + +W++NG+ V V+ ++I+C
Sbjct: 3653 SLAGHKSPVTAVSASETSGDIATVCDSAGGGSDLRLWTVNGDLVGHVH-----CREIICS 3707
Query: 2416 CCVSEMNEWDTQNVIVTGHSDGVVRFW 2496
S E + NVI G +G+VR W
Sbjct: 3708 VAFSNQPEGVSINVIAGGLENGIVRLW 3734
>ref|NP_001107604.1| neurobeachin-like protein 1 [Homo sapiens].
Length = 2694
Score = 395 bits (1014), Expect = e-109
Identities = 252/682 (36%), Positives = 347/682 (50%), Gaps = 22/682 (3%)
Frame = +1
Query: 259 EETQEQLQDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFG 438
E+ + ++ + +++E+E+ D L L+ED C + +D G L
Sbjct: 1860 EDKLDLPEEDITARVNVDEKEEQDQKEKLVLMED---------CELITIIDVIPGRLEIT 1910
Query: 439 KEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVH 618
+H Y DG D + + + I+E+H
Sbjct: 1911 TQHIYFYDGSIEKEDGVGFDFK----------------------------WPHSQIREIH 1942
Query: 619 KRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTSV 798
RRY L+ A+E+F D NY L F+K +RNK+Y R L++ S S G R +
Sbjct: 1943 LRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKIYSRLLSL-----HSPNSYYGSRSPQEL 1997
Query: 799 EQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDS 978
+ SGL TQ+W EISNF YL+ +NT+AGR+YNDL QYPVFPWIL DY S
Sbjct: 1998 FKASGL----------TQKWVNREISNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTS 2047
Query: 979 EEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVAS 1158
EE+DL NP FR+L+KP+G ++ +++Y+++EDP G +HYGTHYS++ V
Sbjct: 2048 EELDLNNPAVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMH 2107
Query: 1159 YLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLF 1338
YL+R+EPFT + ++LQ G FD ADR FHS+ W A N DVKELIPEFFY PEFL
Sbjct: 2108 YLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATW-QALMDNPYDVKELIPEFFYFPEFLE 2166
Query: 1339 NSNNFDLGCKQNGTKL-GDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGY 1515
N N F+LG Q +L DVILP WAK +FI HR+ALE +YVSAHLHEWIDLIFGY
Sbjct: 2167 NQNQFNLGRLQISKELVNDVILPKWAK-SAEDFIYKHRKALESEYVSAHLHEWIDLIFGY 2225
Query: 1516 KQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPKR 1695
KQ+GPAAVEA+NVF++ YEG VD+ + D + A G INNFGQ P QL K+PHPP
Sbjct: 2226 KQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPP-- 2283
Query: 1696 VRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSL-------TPVKELKEPVGQIVCTDK 1854
RL+ + A TS F HL L+ P+ + P Q +
Sbjct: 2284 ---RLSAEEAVQKPTKIDTSTLNLFQHLPELKSFFIEGISDGIPLLKATIPKNQY----R 2336
Query: 1855 GILAVEQNKVLIPPTWN---KTFAW-GYADLSCRLGTYESDKAVT----------VYECL 1992
++ ++LI + N T W Y T+ D+ VT +
Sbjct: 2337 SFMSQGSPELLITISMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKTQRSINGSFAPG 2396
Query: 1993 SEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATAS 2172
E L + + KL+ + G W+ + ++ H D VTC
Sbjct: 2397 LEITSKLFVVSHDAKLLFSAG------YWDNSIQVMSLTKGKIISHIIRHMDIVTCLATD 2450
Query: 2173 LAYHIIVSGSRDRTCIIWDLNK 2238
++SGSRD TC+IW + +
Sbjct: 2451 YCGIHLISGSRDTTCMIWQITQ 2472
>ref|NP_055990.1| neurobeachin-like protein 2 [Homo sapiens].
Length = 2754
Score = 391 bits (1005), Expect = e-108
Identities = 265/732 (36%), Positives = 370/732 (50%), Gaps = 59/732 (8%)
Frame = +1
Query: 280 QDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVI 459
+DQ+ E E E + A L E EK+ C V + GLL ++ Y
Sbjct: 1893 EDQLGEDELAELETPMEAA---ELDEQREKLVLSAECQLVTVVAVVPGLLEVTTQNVYFY 1949
Query: 460 DGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQ 639
DG +T + E + + P+ ++EVH RR+ L+
Sbjct: 1950 DG----STERVETEEGIGYDFRRPLA---------------------QLREVHLRRFNLR 1984
Query: 640 PIAVEVFSGDGRNYLLAF------------------QKG-------IRNKVYQRFLAVVP 744
A+E+F D NY L F Q G +RN+VY L + P
Sbjct: 1985 RSALELFFIDQANYFLNFPCKVGTTPVSSPSQTPRPQPGPIPPHTQVRNQVYSWLLRLRP 2044
Query: 745 SLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSY 924
S+ R + + SGL TQ+W + EISNF+YLM LNT+AGR+Y
Sbjct: 2045 P----SQGYLSSRSPQEMLRASGL----------TQKWVQREISNFEYLMQLNTIAGRTY 2090
Query: 925 NDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGE 1104
NDL QYPVFPW+L DY S +DL+NP FR+L+KP+G + +++Y+ +EDP G
Sbjct: 2091 NDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGT 2150
Query: 1105 TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
+HYGTHYS+A V YL+R+EPFT + ++LQ G FD +DR FHSV AW A +
Sbjct: 2151 IDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAW-QARLESP 2209
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQ-NGTKLGDVILPPWAKGDPREFIRVHREALE 1461
ADVKELIPEFFY P+FL N N FDLGC Q K+GDV+LPPWA P +FI+ HR+ALE
Sbjct: 2210 ADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWA-SSPEDFIQQHRQALE 2268
Query: 1462 CDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFIN 1641
+YVSAHLHEWIDLIFGYKQ+GPAA EA+NVF++ YEG VD+ ++ D + A G I+
Sbjct: 2269 SEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGIIS 2328
Query: 1642 NFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR---------- 1791
NFGQ P QL K+PHP +RL+ + A + T+ F HLD L+
Sbjct: 2329 NFGQTPCQLLKEPHP-----TRLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDG 2383
Query: 1792 -PSLTPVKELKEPVGQIVCTDKGIL-AVEQNKVLIPPTW-----NKTFAWGYADLSCRLG 1950
P + + ++P I +L V + +L +W N + + ++ +G
Sbjct: 2384 VPLVLALVPHRQPHSFITQGSPDLLVTVSASGLLGTHSWLPYDRNISNYFSFSK-DPTMG 2442
Query: 1951 TYESDKAVTVYECLSEW-------GQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKAR 2109
++++ + ++ W GQ L A+ P+ KL+ +GG W+
Sbjct: 2443 SHKTQRLLS-----GPWVPGSGVSGQAL-AVAPDGKLLFSGGH------WDGSLRVTALP 2490
Query: 2110 TLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLT---------QLR 2262
L L H D VTC ++SGSRD TC++W L L+ L
Sbjct: 2491 RGKLLSQLSCHLDVVTCLALDTCGIYLISGSRDTTCMVWRLLHQGGLSVGLAPKPVQVLY 2550
Query: 2263 GHRAPVSALCIN 2298
GH A VS + I+
Sbjct: 2551 GHGAAVSCVAIS 2562
>ref|NP_001186211.2| lipopolysaccharide-responsive and beige-like anchor protein isoform 1
[Homo sapiens].
Length = 2851
Score = 365 bits (937), Expect = e-100
Identities = 221/576 (38%), Positives = 310/576 (53%), Gaps = 29/576 (5%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + N+V F P+ + V
Sbjct: 2124 FTEIRSIFSRRYLLQNTALEIF--------------MANRVAVMFNFPDPATV---KKVV 2166
Query: 775 GQRPNTSVEQGSGLLST----------LVGEKSVTQRWERGEISNFQYLMHLNTLAGRSY 924
P V GL T L ++TQRW+ EISNF+YLM LNT+AGRSY
Sbjct: 2167 NYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSY 2226
Query: 925 NDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGE 1104
NDL QYPVFPW++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED +
Sbjct: 2227 NDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWED--DQ 2284
Query: 1105 TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
P +HYGTHYS+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + S+ +
Sbjct: 2285 VPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRN-SQRDT 2343
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALEC 1464
+D+KELIPEF+YLPE N NN++LG +GT + DV LPPWAK EF+ ++R ALE
Sbjct: 2344 SDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVHINRLALES 2402
Query: 1465 DYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINN 1644
++VS LH+WIDLIFGYKQQGP AV A+NVF++L YEG V++ +I DP+ A I +
Sbjct: 2403 EFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRS 2462
Query: 1645 FGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELK 1821
FGQ P QL +PHPP+ + + V P +DK + L+ PS +PV +
Sbjct: 2463 FGQTPSQLLIEPHPPR---------GSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTHVA 2513
Query: 1822 EPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYE 1959
+ T ++ V N++ W+ A A ++ G +
Sbjct: 2514 ANTQPGLAT-PAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHR 2572
Query: 1960 SDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLG 2139
+ + + Q N +++ G W+ T L Q + G
Sbjct: 2573 RQITDLLDQSIQVHSQCFVITSDNRYILVCG-------FWDKSFRVYSTDTGRLIQVVFG 2625
Query: 2140 HTDTVTCATASLAY----HIIVSGSRDRTCIIWDLN 2235
H D VTC S +Y I+SGSRD T ++W N
Sbjct: 2626 HWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWN 2661
>ref|NP_006717.2| lipopolysaccharide-responsive and beige-like anchor protein isoform 2
[Homo sapiens].
Length = 2863
Score = 365 bits (937), Expect = e-100
Identities = 221/576 (38%), Positives = 310/576 (53%), Gaps = 29/576 (5%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + N+V F P+ + V
Sbjct: 2135 FTEIRSIFSRRYLLQNTALEIF--------------MANRVAVMFNFPDPATV---KKVV 2177
Query: 775 GQRPNTSVEQGSGLLST----------LVGEKSVTQRWERGEISNFQYLMHLNTLAGRSY 924
P V GL T L ++TQRW+ EISNF+YLM LNT+AGRSY
Sbjct: 2178 NYLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSY 2237
Query: 925 NDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGE 1104
NDL QYPVFPW++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED +
Sbjct: 2238 NDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWED--DQ 2295
Query: 1105 TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
P +HYGTHYS+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + S+ +
Sbjct: 2296 VPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRN-SQRDT 2354
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALEC 1464
+D+KELIPEF+YLPE N NN++LG +GT + DV LPPWAK EF+ ++R ALE
Sbjct: 2355 SDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVHINRLALES 2413
Query: 1465 DYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINN 1644
++VS LH+WIDLIFGYKQQGP AV A+NVF++L YEG V++ +I DP+ A I +
Sbjct: 2414 EFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRS 2473
Query: 1645 FGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELK 1821
FGQ P QL +PHPP+ + + V P +DK + L+ PS +PV +
Sbjct: 2474 FGQTPSQLLIEPHPPR---------GSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTHVA 2524
Query: 1822 EPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYE 1959
+ T ++ V N++ W+ A A ++ G +
Sbjct: 2525 ANTQPGLAT-PAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIASNTGMHR 2583
Query: 1960 SDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLG 2139
+ + + Q N +++ G W+ T L Q + G
Sbjct: 2584 RQITDLLDQSIQVHSQCFVITSDNRYILVCG-------FWDKSFRVYSTDTGRLIQVVFG 2636
Query: 2140 HTDTVTCATASLAY----HIIVSGSRDRTCIIWDLN 2235
H D VTC S +Y I+SGSRD T ++W N
Sbjct: 2637 HWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWN 2672
>ref|NP_001191126.1| neurobeachin isoform 2 [Homo sapiens].
Length = 739
Score = 359 bits (922), Expect = 8e-99
Identities = 222/562 (39%), Positives = 315/562 (56%), Gaps = 18/562 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF--QKGIRNKVYQRFLAVVPSLTDSSES 768
+ +I+ V RRYLLQ A+EVF + + + F Q ++ VY +P + +
Sbjct: 2 FSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYS-----LPRVGVGTSY 56
Query: 769 VSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPV 948
Q S+ L + ++TQRW+R EISNF+YLM LNT+AGR+YNDL QYPV
Sbjct: 57 GLPQARRISLATPRQLYKS----SNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPV 112
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGT 1128
FPW+L +Y+SEE+DLT P FR+L+KP+GA +R Y +RY+ WED ++P YHY T
Sbjct: 113 FPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWED--DQSPPYHYNT 170
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS+A S+LVR+EPFT FL G FD DR F SV +W S+ + +DVKELIP
Sbjct: 171 HYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSW-RTSQRDTSDVKELIP 229
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EF+YLPE NSN ++LG +++ + DV LPPWAK P +F+R++R ALE ++VS LH
Sbjct: 230 EFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAK-KPEDFVRINRMALESEFVSCQLH 288
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDLIFGYKQ+GP AV A+NVFH+L YEG V++ +I DP+ A I NFGQ P QL
Sbjct: 289 QWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQL 348
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVC 1845
+PHPP+ L + P D++ + L+ PS +PV + +
Sbjct: 349 LIEPHPPRSSAMHL----CFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL- 403
Query: 1846 TDKGILAVEQNKVLIPPTWNKTF----AWGYADLSCRLGTYESDKAVTVYECLSEWGQIL 2013
T ++ V +++ W+ T A GY+ E D + +++ QI
Sbjct: 404 TIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNK-RQIT 462
Query: 2014 CAICPNPKL-----VITGGTSTV-VC-VWEMGTSKEKARTLTLKQALLGHTDTVTCATAS 2172
+ + ++ V+T + +C W+ T L Q + GH D VTC S
Sbjct: 463 DLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARS 522
Query: 2173 LAY----HIIVSGSRDRTCIIW 2226
+Y IVSGSRD T ++W
Sbjct: 523 ESYIGGDCYIVSGSRDATLLLW 544
>ref|NP_056493.3| neurobeachin isoform 1 [Homo sapiens].
Length = 2946
Score = 359 bits (922), Expect = 8e-99
Identities = 222/562 (39%), Positives = 315/562 (56%), Gaps = 18/562 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF--QKGIRNKVYQRFLAVVPSLTDSSES 768
+ +I+ V RRYLLQ A+EVF + + + F Q ++ VY +P + +
Sbjct: 2209 FSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYS-----LPRVGVGTSY 2263
Query: 769 VSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPV 948
Q S+ L + ++TQRW+R EISNF+YLM LNT+AGR+YNDL QYPV
Sbjct: 2264 GLPQARRISLATPRQLYKS----SNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPV 2319
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGT 1128
FPW+L +Y+SEE+DLT P FR+L+KP+GA +R Y +RY+ WED ++P YHY T
Sbjct: 2320 FPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWED--DQSPPYHYNT 2377
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS+A S+LVR+EPFT FL G FD DR F SV +W S+ + +DVKELIP
Sbjct: 2378 HYSTATSTLSWLVRIEPFTTFFLNANDGKFDHPDRTFSSVARSW-RTSQRDTSDVKELIP 2436
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EF+YLPE NSN ++LG +++ + DV LPPWAK P +F+R++R ALE ++VS LH
Sbjct: 2437 EFYYLPEMFVNSNGYNLGVREDEVVVNDVDLPPWAK-KPEDFVRINRMALESEFVSCQLH 2495
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDLIFGYKQ+GP AV A+NVFH+L YEG V++ +I DP+ A I NFGQ P QL
Sbjct: 2496 QWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQL 2555
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVC 1845
+PHPP+ L + P D++ + L+ PS +PV + +
Sbjct: 2556 LIEPHPPRSSAMHL----CFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL- 2610
Query: 1846 TDKGILAVEQNKVLIPPTWNKTF----AWGYADLSCRLGTYESDKAVTVYECLSEWGQIL 2013
T ++ V +++ W+ T A GY+ E D + +++ QI
Sbjct: 2611 TIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNK-RQIT 2669
Query: 2014 CAICPNPKL-----VITGGTSTV-VC-VWEMGTSKEKARTLTLKQALLGHTDTVTCATAS 2172
+ + ++ V+T + +C W+ T L Q + GH D VTC S
Sbjct: 2670 DLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARS 2729
Query: 2173 LAY----HIIVSGSRDRTCIIW 2226
+Y IVSGSRD T ++W
Sbjct: 2730 ESYIGGDCYIVSGSRDATLLLW 2751
>ref|NP_003571.2| protein FAN isoform 1 [Homo sapiens].
Length = 917
Score = 294 bits (752), Expect = 4e-79
Identities = 236/719 (32%), Positives = 342/719 (47%), Gaps = 82/719 (11%)
Frame = +1
Query: 598 EDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVSG 777
+D++ ++KRR+ L P+ +EVF + + + +Y +F P D
Sbjct: 238 QDVRRIYKRRHGLMPLGLEVF---------CTEDDLCSDIYLKFYE--PQDRDDLYFYIA 286
Query: 778 QRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPW 957
V + + +S +W+RG +SN+QYL+HLN LA RS NDL QYPVFPW
Sbjct: 287 TYLEHHVAEHTA--------ESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYPVFPW 338
Query: 958 ILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYS 1137
I+ DY S E+DL+NP TFR+L+KP+GA ERL + RY++ +P + YG+HYS
Sbjct: 339 IIHDYSSSELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPK-----FMYGSHYS 393
Query: 1138 SAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFF 1317
S V YLVR+ P + L LQ G FD ADRMF+S+ E W + D KELIPEF+
Sbjct: 394 SPGYVLFYLVRIAP--EYMLCLQNGRFDNADRMFNSIAETWKNCLD-GATDFKELIPEFY 450
Query: 1318 YLP-EFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLHEW 1494
FL NS DLG +Q G + DV LPPWA P +F++ ++ALE +YVS HLHEW
Sbjct: 451 GDDVSFLVNSLKLDLGKRQGGQMVDDVELPPWASS-PEDFLQKSKDALESNYVSEHLHEW 509
Query: 1495 IDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFK 1674
IDLIFGYKQ+G AV A NVFH L YEG VD+ +I DP ++ A + I FGQ PKQLF
Sbjct: 510 IDLIFGYKQKGSDAVGAHNVFHPLTYEGGVDLNSIQDPDEKVAMLTQILEFGQTPKQLFV 569
Query: 1675 KPHP----PK-RVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPV------KEL 1818
PHP PK + S+ + NA ++ PG S + L ++T + K
Sbjct: 570 TPHPRRITPKFKSLSQTSSYNASMADSPGEESFEDLTEESKTLAWNNITKLQLHEHYKIH 629
Query: 1819 KEPVGQIVCTDKG--ILAVEQNKVL-----IPPTWNKTFAWGYADLS--------CRLGT 1953
KE V I + G + Q+ L ++ ++ LS + T
Sbjct: 630 KEAVTGITVSRNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLPGDATVIT 689
Query: 1954 YESDKAVTVY--------ECLSEWGQILCAICPNPKLVITGGTSTVVCVW-----EM-GT 2091
D V Y + L + IC + + + + V VW EM GT
Sbjct: 690 SSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHDNRLYSASWDSTVKVWSGVPAEMPGT 749
Query: 2092 SKEKARTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHR 2271
+ L A L H +V + + A ++VSG+++ T IWDL + + Q+ H
Sbjct: 750 KRHHFDLL----AELEHDVSVDTISLNAASTLLVSGTKEGTVNIWDLTTATLMHQIPCHS 805
Query: 2272 APVSAL----------------CINEL---TGDIVSCAGT----HIHVWSINGNPVVS-- 2376
V C+N + TG ++S + VW +GN V+S
Sbjct: 806 GIVCDTAFSPDSRHVLSTGTDGCLNVIDVQTGMLISSMTSDEPQRCFVW--DGNSVLSGS 863
Query: 2377 ---------------VNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEF 2508
G + + C ++E + I+TG D + FW++++
Sbjct: 864 QSGELLVWDLLGAKISERIQGHTGAVTCIWMNEQ-----CSSIITGGEDRQIIFWKLQY 917
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 125,420,856
Number of extensions: 3376950
Number of successful extensions: 16579
Number of sequences better than 1.0e-05: 62
Number of HSP's gapped: 16034
Number of HSP's successfully gapped: 70
Length of query: 1106
Length of database: 18,297,164
Length adjustment: 113
Effective length of query: 993
Effective length of database: 14,572,232
Effective search space: 14470226376
Effective search space used: 14470226376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000728
(3320 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766470.2| WD repeat and FYVE domain-containing protein 3 ... 2090 0.0
Alignment gi|NP_001139494.1| WD repeat and FYVE domain containing 4 [Mus ... 757 0.0
Alignment gi|NP_034878.2| lysosomal-trafficking regulator [Mus musculus]. 414 e-115
Alignment gi|NP_899099.2| neurobeachin-like protein 2 [Mus musculus]. 396 e-110
Alignment gi|NP_775620.2| neurobeachin like 1 [Mus musculus]. 387 e-107
Alignment gi|NP_109620.2| lipopolysaccharide-responsive and beige-like an... 367 e-101
Alignment gi|NP_001071156.1| lipopolysaccharide-responsive and beige-like... 367 e-101
Alignment gi|NP_085098.1| neurobeachin [Mus musculus]. 355 1e-97
Alignment gi|NP_001071155.1| lipopolysaccharide-responsive and beige-like... 350 3e-96
Alignment gi|NP_035075.2| protein FAN [Mus musculus]. 295 2e-79
>ref|NP_766470.2| WD repeat and FYVE domain-containing protein 3 [Mus musculus].
Length = 3508
Score = 2090 bits (5414), Expect = 0.0
Identities = 1013/1094 (92%), Positives = 1031/1094 (94%)
Frame = +1
Query: 37 KPARYRRAISYDSKEYYMRLASGNPAIVQDAIVESSEGEATQQEPEHGEDTIAKVKGLVK 216
KPARYRRAISYDSKEYY+RLASGNPAIVQDAIVESSEGEATQQEPEHGEDTIAKVKGLVK
Sbjct: 2407 KPARYRRAISYDSKEYYLRLASGNPAIVQDAIVESSEGEATQQEPEHGEDTIAKVKGLVK 2466
Query: 217 PPLKRSRSAPDGGDEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCAR 396
PPLKRSRSAPDGGDEETQEQLQDQ+AE S+EEEEKTDNATLLRLLE+GEKIQHMYRCAR
Sbjct: 2467 PPLKRSRSAPDGGDEETQEQLQDQIAESGSIEEEEKTDNATLLRLLEEGEKIQHMYRCAR 2526
Query: 397 VQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKR 576
VQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKR
Sbjct: 2527 VQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKR 2586
Query: 577 TCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTD 756
TCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTD
Sbjct: 2587 TCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTD 2646
Query: 757 SSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLM 936
SSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLM
Sbjct: 2647 SSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLM 2706
Query: 937 QYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAY 1116
QYPVFPWIL+DYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAY
Sbjct: 2707 QYPVFPWILSDYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAY 2766
Query: 1117 HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK 1296
HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK
Sbjct: 2767 HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK 2826
Query: 1297 ELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVS 1476
ELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVS
Sbjct: 2827 ELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVS 2886
Query: 1477 AHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQI 1656
AHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQI
Sbjct: 2887 AHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQI 2946
Query: 1657 PKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSLTPVKELKEPVGQ 1836
PKQLFKKPHPPKRVRSRLNGDN GISVPPG TSDKIFFHHLDNLRPSLTPVKELKEPVGQ
Sbjct: 2947 PKQLFKKPHPPKRVRSRLNGDNIGISVPPGATSDKIFFHHLDNLRPSLTPVKELKEPVGQ 3006
Query: 1837 IVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQILC 2016
IVCTDKGILAVEQNKVLIPP WNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQILC
Sbjct: 3007 IVCTDKGILAVEQNKVLIPPAWNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQILC 3066
Query: 2017 AICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATASLAYHIIVS 2196
A+CPNPKLVITGGTSTVVCVWEMGTSKEKA+ LTLKQALLGHTDTVTCATASLAYHIIVS
Sbjct: 3067 AVCPNPKLVITGGTSTVVCVWEMGTSKEKAKPLTLKQALLGHTDTVTCATASLAYHIIVS 3126
Query: 2197 GSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTHIHVWSINGNPVVS 2376
GSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGT+IHVWSINGNP+VS
Sbjct: 3127 GSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSCAGTYIHVWSINGNPIVS 3186
Query: 2377 VNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQXXXXXXXXXXXXXX 2556
VNTFTGRSQQIVCCC+SEMNEWDTQNVIVTGHSDGVVRFWRMEFLQ
Sbjct: 3187 VNTFTGRSQQIVCCCMSEMNEWDTQNVIVTGHSDGVVRFWRMEFLQVPETPAPEPVEDLE 3246
Query: 2557 MQEDCPEAQIGXXXXXXXXXXXXXXXXXXXXXPKDTPSQPSSTSHRPRAASCRATATWCN 2736
MQE CPEAQIG PKDT SQPSSTSHRPRAASCRATATWC
Sbjct: 3247 MQEGCPEAQIGQQAQDDDSSDSETEEPSVSQDPKDTSSQPSSTSHRPRAASCRATATWCT 3306
Query: 2737 XXXXXXXXXXXXQLSLDERDGFILVNYSEGRARAHLQPPLNHPHPSPVEVRNYNRLKPGY 2916
QLSLDE+DGFI VNYSEG+ RAHLQ PL HPHP+P+E R+Y+RLKPGY
Sbjct: 3307 DSGSDDSRRWSDQLSLDEKDGFIFVNYSEGQTRAHLQGPLAHPHPNPIEARSYSRLKPGY 3366
Query: 2917 RWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRGRVFSWSVSDQPG 3096
RWERQLVFRSKLTMHTAFDRKDN HPAE+TALGVSKDHSRILVGDSRGRVFSWSVSDQPG
Sbjct: 3367 RWERQLVFRSKLTMHTAFDRKDNTHPAEVTALGVSKDHSRILVGDSRGRVFSWSVSDQPG 3426
Query: 3097 RSAADHWVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQSEIKRLKISSPVR 3276
RSAADHWVKDEGGDSCSGCSVRFSLTERRH CRNCGQLFCQKCSRFQSEIKRLKISSPVR
Sbjct: 3427 RSAADHWVKDEGGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSPVR 3486
Query: 3277 VCQNCYYNLQHERG 3318
VCQNCYY+LQHERG
Sbjct: 3487 VCQNCYYSLQHERG 3500
>ref|NP_001139494.1| WD repeat and FYVE domain containing 4 [Mus musculus].
Length = 3024
Score = 757 bits (1955), Expect = 0.0
Identities = 373/738 (50%), Positives = 494/738 (66%), Gaps = 12/738 (1%)
Frame = +1
Query: 328 DNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIET 507
+ +L+ L DGEK+ VQG SEG+LLFG+ HFY+ + FT++ T ++
Sbjct: 2215 ERQVILQELLDGEKVSQKVPMVIVQGHLVSEGILLFGQHHFYICENFTLSPTGDVYCTHH 2274
Query: 508 LPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLL 687
N+ +P I + S +C AY D++E+ + R+LLQ IA+E+F +G + LL
Sbjct: 2275 CLSNISDPFIFNMCSKDRSSDHYSCQRHAYSDLRELRQARFLLQDIALEIFFQNGYSKLL 2334
Query: 688 AFQKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERG 867
F R+K + F PSL + E L ++++ QRW++
Sbjct: 2335 VFYNSDRSKALKSFSTFQPSLKGKG----------TTEDPFNLRKHPGFDRTMLQRWQKR 2384
Query: 868 EISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTD 1047
EISNF+YLM+LNTLAGR+YND MQYPVFPW+LADY SE ++LTNPKTFR+L+KPMGAQT
Sbjct: 2385 EISNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLSKPMGAQTK 2444
Query: 1048 ERLAQYKKRYKDWEDPNGE-TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDL 1224
ER ++ +R+KD E G+ T HY THYSSA+IVASYLVRM PFTQ F LQGG FD+
Sbjct: 2445 ERKLKFTQRFKDVEKIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDV 2504
Query: 1225 ADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILP 1404
ADRMFHSV+ W SASK NM+DV+EL PEFFYLPEFL N N + GC Q+GT LGDV LP
Sbjct: 2505 ADRMFHSVKSTWESASKENMSDVRELTPEFFYLPEFLTNCNAVEFGCMQDGTTLGDVQLP 2564
Query: 1405 PWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQV 1584
PWA GDPR+FI +HR+ALE D+VS++LH WIDLIFGYKQQGPAAVEAVN FH FY ++
Sbjct: 2565 PWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFHPYFYGDRI 2624
Query: 1585 DIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTS-DK 1761
D+ +I DPL ++ +GFI+NFGQ+PKQ+F KPHP + + G S P G +
Sbjct: 2625 DLGSITDPLIKSTILGFISNFGQVPKQIFTKPHPSRNTTGKNPGPGKDASTPVGLPGHSQ 2684
Query: 1762 IFFHHLDNLRPSLTPVKEL----------KEPVGQIVCTDKGILAVEQNKVLIPPTWNKT 1911
F H L LRPS VK++ K +G IV T+K ILAVE+NK+L+PP WN+T
Sbjct: 2685 SFLHSLPALRPSQVTVKDMYLFSLGSESPKGAIGHIVPTEKSILAVEKNKLLMPPLWNRT 2744
Query: 1912 FAWGYADLSCRLGTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGT 2091
F+WG+ D SC LG+Y SDK + +E L+ WG LCA+CP+P +++T G S VVC+WE+
Sbjct: 2745 FSWGFDDFSCCLGSYGSDKILMTFENLAAWGPCLCAVCPSPTMIVTSGASAVVCIWELSL 2804
Query: 2092 SKEKARTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHR 2271
K + R L L+QAL GHT VTC TAS+ + ++VSGS+DRTCI+WDL+ LS + L HR
Sbjct: 2805 VKGRPRGLKLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCILWDLDHLSRVACLPVHR 2864
Query: 2272 APVSALCINELTGDIVSCAGTHIHVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQ 2451
+SA+ I++++G IVSCAG H+ +W++NG P+ S+ T G I CCC+ E WD
Sbjct: 2865 EGISAIAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDAS 2924
Query: 2452 NVIVTGHSDGVVRFWRME 2505
+VI+TG DG+VR W+ E
Sbjct: 2925 HVIITGSKDGMVRIWKTE 2942
Score = 50.4 bits (119), Expect = 9e-06
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 2863 PHPSPVEVRNYNRLKP-GYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRI 3039
P + +E + L P G++W + L +L + A K + +TAL ++++ S++
Sbjct: 2949 PRQAVMEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQSKL 3008
Query: 3040 LVGDSRGRVFSWS 3078
LVGD +GR+F WS
Sbjct: 3009 LVGDEKGRIFCWS 3021
>ref|NP_034878.2| lysosomal-trafficking regulator [Mus musculus].
Length = 3787
Score = 414 bits (1063), Expect = e-115
Identities = 271/780 (34%), Positives = 392/780 (50%), Gaps = 69/780 (8%)
Frame = +1
Query: 364 EKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPR 543
E I+ RC V + G LL GK Y ++ A +
Sbjct: 2998 ESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDA------------------VES 3039
Query: 544 GARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKG-IRNKVY 720
+ QG +L+ + YE+IKEVH+R + L+ AVE+F +GR LLAF +R+ VY
Sbjct: 3040 SSLQG--ELEPASFSWTYEEIKEVHRRWWQLRDNAVEIFLTNGRTLLLAFDNNKVRDDVY 3097
Query: 721 QRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHL 900
Q L + PN +E G+ ++T W G+I+NF+YL HL
Sbjct: 3098 QSIL-------------TNNLPNL-LEYGN--------ITALTNLWYSGQITNFEYLTHL 3135
Query: 901 NTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYK 1080
N AGRS+NDLMQYPVFP+IL+DY SE +DL +P +RNL+KP+ Q E+ +Y YK
Sbjct: 3136 NKHAGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRNLSKPIAVQYKEKEDRYVDTYK 3195
Query: 1081 DWE----------DPNGETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLAD 1230
E DP YHYG+HYS++ V +LVRM PFT++FL Q FD+ D
Sbjct: 3196 YLEEEYRKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPD 3255
Query: 1231 RMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPW 1410
R FHS W +S +M DVKELIPEFFYLPEFL N FD G +QNG ++ V LPPW
Sbjct: 3256 RTFHSTNTTWRLSSFESMTDVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPW 3315
Query: 1411 AKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDI 1590
A+ DPR FI +HR+ALE D+VS ++ WIDL+FGYKQ+G A+V+A+NVFH Y G +D+
Sbjct: 3316 ARNDPRLFILIHRQALESDHVSQNICHWIDLVFGYKQKGKASVQAINVFHPATYFG-MDV 3374
Query: 1591 YNINDPLKETATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFF 1770
+ DP++ A I +GQ P+QLF H R ++LN + P + F
Sbjct: 3375 SAVEDPVQRRALETMIKTYGQTPRQLFHTAH-ASRPGAKLNIEGE----LPAAVGLLVQF 3429
Query: 1771 HHLDNLRPSLTPVKELKEP--------------VGQ------IVC--------------- 1845
R + PVKE+ P VG +VC
Sbjct: 3430 ----AFRETREPVKEVTHPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQAL 3485
Query: 1846 TDKGILAVEQNKVLIPP---------------TWNKTFAWGYADLSCRLGTYESDKAVTV 1980
+ I + +N L+ W+ +WGYAD RL + +S+ +
Sbjct: 3486 PTRAICGLSRNFCLLMTYNKEQGVRSMNNTNIQWSAILSWGYADNILRLKSKQSEPPINF 3545
Query: 1981 YECLSEWGQILCAICPNPKLVITGGTSTVVCVW--EMGTSKEKARTLTLKQALLGHTDTV 2154
+ + CA P+ + TG V+ + + +S + + L GHT+ +
Sbjct: 3546 IQSSQQHQVTSCAWVPDSCQLFTGSKCGVITAYTNRLTSSTPSEIEMESQMHLYGHTEEI 3605
Query: 2155 TCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSC--- 2325
T Y +++S SRD TCI+WDLN+L ++ L GH++PV+A+ +E +GDI +
Sbjct: 3606 TGLCVCKPYSVMISVSRDGTCIVWDLNRLCYVQSLAGHKSPVTAVSASETSGDIATVCDS 3665
Query: 2326 --AGTHIHVWSINGNPVVSVNTFTGRSQQIVC-CCVSEMNEWDTQNVIVTGHSDGVVRFW 2496
G+ + +W++NG+ V V+ ++I+C S E + NVI G +G+VR W
Sbjct: 3666 AGGGSDLRLWTVNGDLVGHVH-----CREIICSVAFSNQPEGVSINVIAGGLENGIVRLW 3720
>ref|NP_899099.2| neurobeachin-like protein 2 [Mus musculus].
Length = 2750
Score = 396 bits (1018), Expect = e-110
Identities = 270/738 (36%), Positives = 371/738 (50%), Gaps = 51/738 (6%)
Frame = +1
Query: 238 SAPDGGDEETQEQL--QDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCARVQGLD 411
SAP +E +EQL +D A S MEE + D E EK+ C V +
Sbjct: 1880 SAPP--EELPEEQLGEEDLAALESLMEEAAELD--------EKREKLVLSAECQLVTVVA 1929
Query: 412 TSEGLLLFGKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIF 591
GLL +H Y DG +T + E + + P+
Sbjct: 1930 VVPGLLEITTQHVYFYDG----STERVETEEGIGHDFRRPLA------------------ 1967
Query: 592 AYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRN-------KVYQRFLAVVPSL 750
++EVH RR+ L+ A+E+F D NY L F + + + L +PS
Sbjct: 1968 ---QLREVHLRRFNLRRSALELFFIDQSNYFLNFPHKVAASSASSPCQAPRPQLYPIPSH 2024
Query: 751 TDSSESVSGQ----RPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGR 918
T V RP T S ++ +TQ+W + EISNF+YLM LNT+AGR
Sbjct: 2025 TQLRNQVYSLLLRLRPPTQGYLSSRSPLEMLRASGLTQKWVQREISNFEYLMQLNTIAGR 2084
Query: 919 SYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPN 1098
+YNDL QYPVFPW+L DY S +DL+NP FR+L+KP+G + +++Y+ +EDP
Sbjct: 2085 TYNDLSQYPVFPWVLQDYVSPVLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPA 2144
Query: 1099 GETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKH 1278
G +HYGTHYS+A V YL+R+EPFT + ++LQ G FD +DR FHSV AW A
Sbjct: 2145 GTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAW-QARLE 2203
Query: 1279 NMADVKELIPEFFYLPEFLFNSNNFDLGCKQ-NGTKLGDVILPPWAKGDPREFIRVHREA 1455
+ ADVKELIPEFFY P+FL N N FDLGC Q K+GDV+LPPWA G P +FI+ HR+A
Sbjct: 2204 SPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWA-GSPEDFIQKHRQA 2262
Query: 1456 LECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGF 1635
LE +YVS HLHEWIDLIFGYKQ+GPAA EA+NVF++ YEG VD+ ++ D + A G
Sbjct: 2263 LESEYVSTHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVADERERKALEGI 2322
Query: 1636 INNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRP------- 1794
I+NFGQ P QL K+PHPP RL+ + A + T+ F +L+ L+
Sbjct: 2323 ISNFGQTPCQLLKEPHPP-----RLSAEEAANRLARLDTNSPSIFQNLNQLKAFFAEVVS 2377
Query: 1795 -------SLTPVKELKEPVGQIVCTDKGILAVEQNKVLIPPTW-------------NKTF 1914
+L P ++ + Q + ++ V + +L TW +K
Sbjct: 2378 EAVPLVLALVPHRQSHSFITQ--SSSDMLVTVSASGLLGTHTWLPYDRNINNYFTFSKDP 2435
Query: 1915 AWGYADLSCRL-GTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGT 2091
G + L G + SD V+ A+ P+ KL+ +GG W+
Sbjct: 2436 TMGSPKVQKLLSGPWVSDSGVSAQ---------ALAVAPDGKLLFSGGH------WDGSL 2480
Query: 2092 SKEKARTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQ----- 2256
L L H D VTC ++SGSRD TC++W L + S L+
Sbjct: 2481 RVTSLPRGRLLNQLSRHLDIVTCLALDTCGIYLISGSRDTTCMVWRLLQQSGLSAGLAPK 2540
Query: 2257 ----LRGHRAPVSALCIN 2298
L GH A VS + I+
Sbjct: 2541 PVQVLYGHVAAVSCVAIS 2558
>ref|NP_775620.2| neurobeachin like 1 [Mus musculus].
Length = 2688
Score = 387 bits (994), Expect = e-107
Identities = 252/683 (36%), Positives = 349/683 (51%), Gaps = 22/683 (3%)
Frame = +1
Query: 256 DEETQEQLQDQVAEGSSMEEEEKTDNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLF 435
+E+ E L++ +A +++E+E+ + L L ED C + +D G L
Sbjct: 1854 EEDKLELLEEDMAARVNIDEKEEQNQKEKLVLTED---------CELITVIDIIPGRLEV 1904
Query: 436 GKEHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEV 615
+H Y D + + L + P + I+E+
Sbjct: 1905 TTQHIYFHDN-------SVEKEDGLGFDFKWP---------------------HSQIREI 1936
Query: 616 HKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTS 795
H RRY L+ A+E+F D NY L F+K +RNK+Y R L++ S + G R
Sbjct: 1937 HLRRYNLRRSALEIFHVDQSNYFLNFKKEVRNKIYSRLLSL------HSPTGYGTRSPQE 1990
Query: 796 VEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYD 975
+ + SGL TQ+W EI+NF YL+ +NT+AGR+YNDL QYPVFPWIL DY
Sbjct: 1991 LFKASGL----------TQKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYT 2040
Query: 976 SEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGTHYSSAMIVA 1155
SEE+DL NP FR+L+KP+G ++ +++Y+++EDP G +HYGTHYS++ V
Sbjct: 2041 SEELDLNNPTVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVM 2100
Query: 1156 SYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFL 1335
YL+R+EPFT + ++LQ G FD ADR FHS+ W A N DVKELIPEFFY PEFL
Sbjct: 2101 HYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATW-QALMDNTYDVKELIPEFFYFPEFL 2159
Query: 1336 FNSNNFDLGCKQNGTKL-GDVILPPWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFG 1512
N N F+LG Q +L DVILP WAK +FI HR+ALE +YVSAHLHEWIDLIFG
Sbjct: 2160 ENQNEFNLGHLQVSKELVNDVILPRWAK-SAEDFIYKHRKALESEYVSAHLHEWIDLIFG 2218
Query: 1513 YKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 1692
YKQ+GPAAVEA+NVF++ YEG VD+ + D + A G INNFGQ P QL K+PHPP
Sbjct: 2219 YKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPP- 2277
Query: 1693 RVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRPSL-------TPVKELKEPVGQIVCTD 1851
RL+ + A S F HL L+ P+ + P Q
Sbjct: 2278 ----RLSAEEAIQKQTKTEISTLNLFQHLTELKSFFIEGISDGIPLLKAIIPKNQ----S 2329
Query: 1852 KGILAVEQNKVLIPPTWN---KTFAW-GYADLSCRLGTYESDKAVT---VYECLS----- 1995
+ ++ ++LI + N T W Y T+ D+ VT +S
Sbjct: 2330 RSFMSQGSPELLITVSMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTISGPFAP 2389
Query: 1996 --EWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLGHTDTVTCATA 2169
E L + + KL+ + G W+ + + H D VTC
Sbjct: 2390 GLEITSKLFVVSHDAKLLFSAGH------WDNSIQVMSLTKGKIVSHNIRHIDIVTCLAT 2443
Query: 2170 SLAYHIIVSGSRDRTCIIWDLNK 2238
++SGSRD TC+IW + +
Sbjct: 2444 DYCGIHLISGSRDTTCMIWQITQ 2466
>ref|NP_109620.2| lipopolysaccharide-responsive and beige-like anchor protein isoform
alpha [Mus musculus].
Length = 2854
Score = 367 bits (943), Expect = e-101
Identities = 222/576 (38%), Positives = 311/576 (53%), Gaps = 29/576 (5%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + N+V F P+ + V
Sbjct: 2126 FTEIRSIFSRRYLLQNTALEIF--------------MANRVAVMFNFPDPATV---KKVV 2168
Query: 775 GQRPNTSVEQGSGLLST----------LVGEKSVTQRWERGEISNFQYLMHLNTLAGRSY 924
P V GL T L ++TQRW+ EISNF+YLM LNT+AGRSY
Sbjct: 2169 NYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSY 2228
Query: 925 NDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGE 1104
NDL QYPVFPW++ +Y+SEE+DLT P FR+L+KP+GA +R A + +R++ WED +
Sbjct: 2229 NDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWED--DQ 2286
Query: 1105 TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
P +HYGTHYS+A V ++L+R+EPFT FL LQGG FD ADR F SV AW + S+ +
Sbjct: 2287 VPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRN-SQRDT 2345
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALEC 1464
+D+KELIPEF+YLPE N NN++LG +GT + DV LPPWAK EF+R++R ALE
Sbjct: 2346 SDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALES 2404
Query: 1465 DYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINN 1644
++VS LH+WIDLIFGYKQQGP AV A+NVF++L YEG V++ +I DP+ A I +
Sbjct: 2405 EFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRS 2464
Query: 1645 FGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELK 1821
FGQ P QL +PHPP+ + + P +D+ + L+ PS +PV +
Sbjct: 2465 FGQTPSQLLIEPHPPR---------GSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVA 2515
Query: 1822 EPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYE 1959
Q ++ V N++ W+ A A ++C GT+
Sbjct: 2516 ANT-QPGLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIACGTGTHR 2574
Query: 1960 SDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLG 2139
+ + + Q N +++ G W+ T L Q + G
Sbjct: 2575 RQVTDLLDQSIQVHSQCFVITSDNRYILVCG-------FWDKSFRVYSTDTGKLIQVVFG 2627
Query: 2140 HTDTVTCATASLAY----HIIVSGSRDRTCIIWDLN 2235
H D VTC S +Y I+SGSRD T ++W N
Sbjct: 2628 HWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWN 2663
>ref|NP_001071156.1| lipopolysaccharide-responsive and beige-like anchor protein isoform
beta [Mus musculus].
Length = 2790
Score = 367 bits (943), Expect = e-101
Identities = 222/576 (38%), Positives = 311/576 (53%), Gaps = 29/576 (5%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + N+V F P+ + V
Sbjct: 2126 FTEIRSIFSRRYLLQNTALEIF--------------MANRVAVMFNFPDPATV---KKVV 2168
Query: 775 GQRPNTSVEQGSGLLST----------LVGEKSVTQRWERGEISNFQYLMHLNTLAGRSY 924
P V GL T L ++TQRW+ EISNF+YLM LNT+AGRSY
Sbjct: 2169 NYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSY 2228
Query: 925 NDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGE 1104
NDL QYPVFPW++ +Y+SEE+DLT P FR+L+KP+GA +R A + +R++ WED +
Sbjct: 2229 NDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWED--DQ 2286
Query: 1105 TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
P +HYGTHYS+A V ++L+R+EPFT FL LQGG FD ADR F SV AW + S+ +
Sbjct: 2287 VPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRN-SQRDT 2345
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALEC 1464
+D+KELIPEF+YLPE N NN++LG +GT + DV LPPWAK EF+R++R ALE
Sbjct: 2346 SDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALES 2404
Query: 1465 DYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINN 1644
++VS LH+WIDLIFGYKQQGP AV A+NVF++L YEG V++ +I DP+ A I +
Sbjct: 2405 EFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRS 2464
Query: 1645 FGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELK 1821
FGQ P QL +PHPP+ + + P +D+ + L+ PS +PV +
Sbjct: 2465 FGQTPSQLLIEPHPPR---------GSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVA 2515
Query: 1822 EPVGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYAD--------------LSCRLGTYE 1959
Q ++ V N++ W+ A A ++C GT+
Sbjct: 2516 ANT-QPGLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIACGTGTHR 2574
Query: 1960 SDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQALLG 2139
+ + + Q N +++ G W+ T L Q + G
Sbjct: 2575 RQVTDLLDQSIQVHSQCFVITSDNRYILVCG-------FWDKSFRVYSTDTGKLIQVVFG 2627
Query: 2140 HTDTVTCATASLAY----HIIVSGSRDRTCIIWDLN 2235
H D VTC S +Y I+SGSRD T ++W N
Sbjct: 2628 HWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWN 2663
>ref|NP_085098.1| neurobeachin [Mus musculus].
Length = 2936
Score = 355 bits (911), Expect = 1e-97
Identities = 219/562 (38%), Positives = 314/562 (55%), Gaps = 18/562 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF--QKGIRNKVYQRFLAVVPSLTDSSES 768
+ +I+ V RRYLLQ A+EVF + + + F Q ++ VY +P + +
Sbjct: 2199 FSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYS-----LPRVGVGTSY 2253
Query: 769 VSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPV 948
Q S+ L + ++TQRW+R EISNF+YLM LNT+AGR+YNDL QYPV
Sbjct: 2254 GLPQARRISLATPRQLYKS----SNMTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPV 2309
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGT 1128
FPW+L +Y+SEE+DLT P FR+L+KP+GA +R Y +RY+ WE+ ++P +HY T
Sbjct: 2310 FPWVLTNYESEELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEE--DQSPPFHYNT 2367
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS+A S+LVR+EPFT FL G FD DR F S+ +W S+ + +DVKELIP
Sbjct: 2368 HYSTATSALSWLVRIEPFTTFFLNANDGKFDHPDRTFSSIARSW-RTSQRDTSDVKELIP 2426
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EF+YLPE NSN + LG +++ + DV LPPWAK P +F+R++R ALE ++VS LH
Sbjct: 2427 EFYYLPEMFVNSNGYHLGVREDEVVVNDVDLPPWAK-KPEDFVRINRMALESEFVSCQLH 2485
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPKQL 1668
+WIDLIFGYKQ+GP AV A+NVFH+L YEG V++ +I DP+ A I NFGQ P QL
Sbjct: 2486 QWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAMEAQIQNFGQTPSQL 2545
Query: 1669 FKKPHPPKRVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLR-PSLTPVKELKEPVGQIVC 1845
+PHPP+ L + P D++ + L+ PS +PV + +
Sbjct: 2546 LIEPHPPRSSAMHL----CFLPQSPLMFKDQMQQDVIMVLKFPSNSPVTHVAANTLPHL- 2600
Query: 1846 TDKGILAVEQNKVLIPPTWNKTF----AWGYADLSCRLGTYESDKAVTVYECLSEWGQIL 2013
T ++ V +++ W+ T A GY+ E D + +++ QI
Sbjct: 2601 TIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLDQAHHLPIEMDPLIANNSGVNK-RQIT 2659
Query: 2014 CAICPNPKL-----VITGGTSTV-VC-VWEMGTSKEKARTLTLKQALLGHTDTVTCATAS 2172
+ + ++ V+T + +C W+ T L Q + GH D VTC S
Sbjct: 2660 DLVDQSIQINAHCFVVTADNRYILICGFWDKSFRVYSTETGKLTQIVFGHWDVVTCLARS 2719
Query: 2173 LAY----HIIVSGSRDRTCIIW 2226
+Y IVSGSRD T ++W
Sbjct: 2720 ESYIGGDCYIVSGSRDATLLLW 2741
>ref|NP_001071155.1| lipopolysaccharide-responsive and beige-like anchor protein isoform
gamma [Mus musculus].
Length = 2577
Score = 350 bits (899), Expect = 3e-96
Identities = 182/376 (48%), Positives = 243/376 (64%), Gaps = 10/376 (2%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSESVS 774
+ +I+ + RRYLLQ A+E+F + N+V F P+ + V
Sbjct: 2126 FTEIRSIFSRRYLLQNTALEIF--------------MANRVAVMFNFPDPATV---KKVV 2168
Query: 775 GQRPNTSVEQGSGLLST----------LVGEKSVTQRWERGEISNFQYLMHLNTLAGRSY 924
P V GL T L ++TQRW+ EISNF+YLM LNT+AGRSY
Sbjct: 2169 NYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSY 2228
Query: 925 NDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGE 1104
NDL QYPVFPW++ +Y+SEE+DLT P FR+L+KP+GA +R A + +R++ WED +
Sbjct: 2229 NDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWED--DQ 2286
Query: 1105 TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 1284
P +HYGTHYS+A V ++L+R+EPFT FL LQGG FD ADR F SV AW + S+ +
Sbjct: 2287 VPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRN-SQRDT 2345
Query: 1285 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALEC 1464
+D+KELIPEF+YLPE N NN++LG +GT + DV LPPWAK EF+R++R ALE
Sbjct: 2346 SDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAK-TSEEFVRINRLALES 2404
Query: 1465 DYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINN 1644
++VS LH+WIDLIFGYKQQGP AV A+NVF++L YEG V++ +I DP+ A I +
Sbjct: 2405 EFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRS 2464
Query: 1645 FGQIPKQLFKKPHPPK 1692
FGQ P QL +PHPP+
Sbjct: 2465 FGQTPSQLLIEPHPPR 2480
>ref|NP_035075.2| protein FAN [Mus musculus].
Length = 920
Score = 295 bits (755), Expect = 2e-79
Identities = 235/726 (32%), Positives = 345/726 (47%), Gaps = 89/726 (12%)
Frame = +1
Query: 598 EDIKEVHKRRYLLQPIAVEVFSGD----GRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSE 765
+D++ ++KRR+ L P+ +EVF D YL ++ R+ +Y F ++E
Sbjct: 238 QDVRRIYKRRHGLMPLGLEVFCTDDDLCSDIYLKFYEPQDRDDLY--FYIATYLEHHAAE 295
Query: 766 SVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYP 945
+ +S +W+RG +SN+QYL+HLN LA RS NDL QYP
Sbjct: 296 HTA---------------------ESYMLQWQRGHLSNYQYLLHLNNLADRSCNDLSQYP 334
Query: 946 VFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYG 1125
VFPWI++DY S E+DL+NP TFR+L+KP+GA ERL + RY++ +P + YG
Sbjct: 335 VFPWIISDYSSPELDLSNPATFRDLSKPVGALNAERLERLLTRYQEMPEPR-----FMYG 389
Query: 1126 THYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELI 1305
+HYSS V YLVR+ P + L LQ G FD ADRMF+S+ E W + D KELI
Sbjct: 390 SHYSSPGYVLFYLVRIAP--EYMLCLQNGRFDNADRMFNSIAETWKNCLD-GATDFKELI 446
Query: 1306 PEFFYLP-EFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAH 1482
PEF+ FL NS DLG +Q G + DV LP WA P++F++ +++ALE YVS H
Sbjct: 447 PEFYDEDVSFLVNSLKLDLGKRQGGQMVDDVDLPAWASS-PQDFLQKNKDALESGYVSEH 505
Query: 1483 LHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQIPK 1662
LHEWIDLIFGYKQ+G A+ A NVFH L YEG VD+ +I DP ++ A + I FGQ PK
Sbjct: 506 LHEWIDLIFGYKQKGSEAIGAHNVFHPLTYEGGVDLNSIEDPDEKVAMLTQILEFGQTPK 565
Query: 1663 QLFKKPHP----PK-RVRSRLNGDNAGISVPPGCTSDKIFFHHLDNLRP-SLTPVKEL-- 1818
QLF PHP PK + S+ + NA ++ P ++ F + R + + + +L
Sbjct: 566 QLFVTPHPRRITPKFKSLSQASSYNASLTDSPVSPGEESFEDLTEESRTLAWSNIAKLQL 625
Query: 1819 -------KEPVGQIV--CTDKGILAVEQNKVL-----IPPTWNKTFAWGYADL-SCRLGT 1953
KE V I C + Q+ L ++ ++ L SC L
Sbjct: 626 HEQYKIHKEAVTGIAVSCNGSSVFTTSQDSTLKMFSKESKMLQRSISFSNMALSSCLLLP 685
Query: 1954 YES-------DKAVTVY--------ECLSEWGQILCAICPNPKLVITGGTSTVVCVW--- 2079
++ D V Y + L + IC + + +G + V VW
Sbjct: 686 GDTTVISSSWDNNVYFYSIAFGRRQDTLMGHDDAVSKICWHNDRLYSGSWDSTVKVWSGV 745
Query: 2080 --EM-GTSKEKARTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFL 2250
EM GT + + L A L H +V + ++VSG+++ IWDL + L
Sbjct: 746 PAEMPGTKRHQFDLL----AELEHDVSVNTINLNAVSTLLVSGTKEGMVNIWDLTTATLL 801
Query: 2251 TQLRGHRAPVSAL----------------CINEL---TGDIVSCAGT----HIHVWSING 2361
Q H V C+N + TG ++S + VW +G
Sbjct: 802 HQTSCHSGTVCDAAFSPDSRHILSTGVDGCLNVIDVQTGMLISSMASEEPQRCFVW--DG 859
Query: 2362 NPVVS-----------------VNTFTGRSQQIVCCCVSEMNEWDTQNVIVTGHSDGVVR 2490
N V+S G + + C ++E + I+TG D +
Sbjct: 860 NSVLSGSRSGELLVWDLLGAKVSERIQGHTGAVTCMWMNEQ-----CSSIITGGEDRQIM 914
Query: 2491 FWRMEF 2508
FW++++
Sbjct: 915 FWKLQY 920
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 106,525,666
Number of extensions: 2844912
Number of successful extensions: 13570
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 12963
Number of HSP's successfully gapped: 51
Length of query: 1106
Length of database: 15,617,559
Length adjustment: 112
Effective length of query: 994
Effective length of database: 12,253,527
Effective search space: 12180005838
Effective search space used: 12180005838
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000728
(3320 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926773.3| PREDICTED: WD repeat- and FYVE domain-contai... 748 0.0
Alignment gi|XP_003357047.1| PREDICTED: lipopolysaccharide-responsive and... 328 2e-89
Alignment gi|XP_001925835.3| PREDICTED: LOW QUALITY PROTEIN: lysosomal-tr... 311 1e-84
Alignment gi|XP_001927410.2| PREDICTED: protein FAN [Sus scrofa]. 294 2e-79
Alignment gi|XP_003361477.1| PREDICTED: neurobeachin-like protein 1-like,... 223 7e-58
Alignment gi|XP_003361610.1| PREDICTED: neurobeachin-like, partial [Sus s... 110 4e-24
Alignment gi|XP_003130974.2| PREDICTED: neurobeachin [Sus scrofa]. 107 3e-23
Alignment gi|XP_003131704.2| PREDICTED: myotubularin-related protein 4-li... 70 6e-12
Alignment gi|XP_003128863.2| PREDICTED: lateral signaling target protein ... 67 8e-11
Alignment gi|XP_003126762.2| PREDICTED: FYVE, RhoGEF and PH domain-contai... 65 2e-10
>ref|XP_001926773.3| PREDICTED: WD repeat- and FYVE domain-containing protein 4 [Sus
scrofa].
Length = 3185
Score = 748 bits (1931), Expect = 0.0
Identities = 368/738 (49%), Positives = 501/738 (67%), Gaps = 12/738 (1%)
Frame = +1
Query: 328 DNATLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGKEHFYVIDGFTMTATREIRDIET 507
+ +L+ L D EK+ Y VQG EGLLLFG++HFY+ + FT++ ++
Sbjct: 2377 ERQVILQELLDHEKVTQKYSLVIVQGHLVCEGLLLFGQQHFYICENFTLSPMGDVYCTRH 2436
Query: 508 LPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHKRRYLLQPIAVEVFSGDGRNYLL 687
N+ +P I + S +C +Y D++E+ + R+LLQ IA+E+F +G + L
Sbjct: 2437 CLSNISDPFIFNMCSKDRSSDNYSCQRHSYGDLRELRQARFLLQDIALEIFFQNGYSKFL 2496
Query: 688 AFQKGIRNKVYQRFLAVVPSLTDSSESVSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERG 867
F R+KV++ F + PSL +S + N GS ++++ Q+W++
Sbjct: 2497 VFYNRDRSKVFKSFCSFQPSL--KGKSFTEDPLNLRRYPGS--------DRTMLQKWQKR 2546
Query: 868 EISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTD 1047
+ISNF+YLMHLNT+AGR+YND MQYPVFPW+LADY S+ ++LTNPKTFR+L+KPMGAQT
Sbjct: 2547 DISNFEYLMHLNTMAGRTYNDYMQYPVFPWVLADYSSQTLNLTNPKTFRDLSKPMGAQTK 2606
Query: 1048 ERLAQYKKRYKDWEDPNGE-TPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDL 1224
ER ++ +R+K+ E G+ T HY THYSSA+IVASYLVRM PFTQ F LQGG FD+
Sbjct: 2607 ERRLKFIQRFKEVEKTEGDMTVQCHYCTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDV 2666
Query: 1225 ADRMFHSVREAWYSASKHNMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILP 1404
ADRMFHS++ AW SAS+ NM+DV+EL PEFFYLPEFL N N + GC Q+GT LGDV LP
Sbjct: 2667 ADRMFHSMKNAWESASRENMSDVRELTPEFFYLPEFLTNCNALEFGCMQDGTALGDVQLP 2726
Query: 1405 PWAKGDPREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQV 1584
PWA GDPR+FI +HR+ALE D+VSA+LH WIDLIFGYKQQG AAVEAVN FH FY ++
Sbjct: 2727 PWADGDPRKFISLHRQALESDFVSANLHHWIDLIFGYKQQGSAAVEAVNTFHPYFYGDKM 2786
Query: 1585 DIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPKRVRSRLNGDNAGISVPPGCTS-DK 1761
D+ +I DPL + +GF++NFGQ+P+QLF KPHP + + +S P +
Sbjct: 2787 DLSSIRDPLIRSTILGFVSNFGQVPRQLFTKPHPARTAAGK-PSPGKDVSTPASLHGHPQ 2845
Query: 1762 IFFHHLDNLRPSLTPVKEL----------KEPVGQIVCTDKGILAVEQNKVLIPPTWNKT 1911
FF+ L +LRPS VK++ K +G IV TDK ILAVE NK+L+PP W++T
Sbjct: 2846 PFFYSLQSLRPSQVTVKDMYLFSLGSESPKGAIGHIVPTDKTILAVETNKMLLPPHWSRT 2905
Query: 1912 FAWGYADLSCRLGTYESDKAVTVYECLSEWGQILCAICPNPKLVITGGTSTVVCVWEMGT 2091
F+WG+ D SC LG Y SDK + +E L+ WG+ LCA+CP+P ++IT G S VVCVWE+
Sbjct: 2906 FSWGFDDFSCCLGNYGSDKILMTFENLAPWGRCLCAVCPSPTVIITSGASAVVCVWELSI 2965
Query: 2092 SKEKARTLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLTQLRGHR 2271
+K + L LKQAL GHT VTC AS+ ++++VSGS+DRTCI+WDL++L+ +++L HR
Sbjct: 2966 AKGRPTGLRLKQALYGHTQAVTCLAASVPFNLLVSGSQDRTCILWDLDRLTHVSRLPAHR 3025
Query: 2272 APVSALCINELTGDIVSCAGTHIHVWSINGNPVVSVNTFTGRSQQIVCCCVSEMNEWDTQ 2451
+SA+ I++++G IVSCAG H+ +W++NG P+ S+ T G I CCCV E WDT
Sbjct: 3026 EGISAIAISDISGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGAITCCCVMEGPAWDTN 3085
Query: 2452 NVIVTGHSDGVVRFWRME 2505
+VIVTG DG+VR W+ E
Sbjct: 3086 HVIVTGSQDGMVRIWKTE 3103
Score = 54.3 bits (129), Expect = 4e-07
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +1
Query: 2911 GYRWERQLVFRSKLTMHTAFDRKDNAHPAEITALGVSKDHSRILVGDSRGRVFSWS 3078
G+RWE+ L +L + A K N + +TAL VS++ +++LVGD +GR+F WS
Sbjct: 3127 GHRWEKNLALCRELDVSVALTGKPNKTNSAVTALAVSRNQTKLLVGDEKGRIFCWS 3182
>ref|XP_003357047.1| PREDICTED: lipopolysaccharide-responsive and beige-like anchor
protein, partial [Sus scrofa].
Length = 2047
Score = 328 bits (840), Expect = 2e-89
Identities = 173/364 (47%), Positives = 239/364 (65%), Gaps = 13/364 (3%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAFQKGIRNKVYQRFLAVVPSLTDSS--ES 768
+ +I+ V RRYLLQ A+E+F + N+V AV+ + DS+ +
Sbjct: 1666 FTEIRSVFSRRYLLQNTALEIF--------------MANRV-----AVMFNFPDSATVKK 1706
Query: 769 VSGQRPNTSVEQGSGLLST----------LVGEKSVTQRWERGEISNFQYLMHLNTLAGR 918
V P + GL T L ++TQRW+ EISNF+YLM LNT+AGR
Sbjct: 1707 VVNYLPRVGIGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGR 1766
Query: 919 SYNDLMQYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPN 1098
SYNDL QYPVFPW++ +Y+SEE+DLT P FR+L+KP+GA +R A + +RY+ WED
Sbjct: 1767 SYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERYESWED-- 1824
Query: 1099 GETPAYHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKH 1278
+ P +HYGTHYS+A V ++L+R+EPFT FL LQGG FD ADR F S+ AW + S+
Sbjct: 1825 DQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRN-SQR 1883
Query: 1279 NMADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREAL 1458
+ +D+KELIPEF+YLPE N N+++LG +GT + DV LPPWA+ EF+R++R AL
Sbjct: 1884 DTSDIKELIPEFYYLPEMFVNFNDYNLGVMDDGTVVSDVELPPWAR-TSEEFVRINRLAL 1942
Query: 1459 ECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDP-LKETATIGF 1635
E ++VS LH+WIDLIFGYKQQGP AV A+NVF++L YEG V++ +I+DP L+E +
Sbjct: 1943 ESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSISDPILRENVSQRS 2002
Query: 1636 INNF 1647
+N +
Sbjct: 2003 LNKY 2006
>ref|XP_001925835.3| PREDICTED: LOW QUALITY PROTEIN: lysosomal-trafficking regulator [Sus
scrofa].
Length = 3443
Score = 311 bits (797), Expect = 1e-84
Identities = 184/444 (41%), Positives = 252/444 (56%), Gaps = 13/444 (2%)
Frame = +1
Query: 268 QEQLQDQVAEGSSMEEEEKTDNA--TLLRLLEDGEKIQHMYRCARVQGLDTSEGLLLFGK 441
+++ +D V S E+KT ++ + ++ E I+ RC V + G LL GK
Sbjct: 2806 RQKSEDVVKPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGK 2865
Query: 442 EHFYVIDGFTMTATREIRDIETLPPNMHEPIIPRGARQGPSQLKRTCSIFAYEDIKEVHK 621
Y ++ + + + QG +L+ + YE+IKEVHK
Sbjct: 2866 CGMYFVE------------------DNASDTVESSSLQG--ELEPASFSWTYEEIKEVHK 2905
Query: 622 RRYLLQPIAVEVFSGDGRNYLLAFQKG-IRNKVYQRFLAVVPSLTDSSESVSGQRPNTSV 798
R + L+ AVE+F +GR LLAF +R+ VY L + PN +
Sbjct: 2906 RWWQLRDNAVEIFLTNGRTLLLAFDNTKVRDDVYHSIL-------------TNNLPNL-L 2951
Query: 799 EQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDS 978
E G+ ++T W G+I+NF+YL HLN AGRS+NDLMQYPVFP+ILADY S
Sbjct: 2952 EYGN--------ITALTNLWYTGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILADYVS 3003
Query: 979 EEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWE----------DPNGETPAYHYGT 1128
E +DL++P +RNL+KP+ Q E+ +Y YK E DP YHYG+
Sbjct: 3004 ETLDLSDPSVYRNLSKPIAVQYKEKEDRYVDTYKYLEEEYRKGAREDDPMPPVQPYHYGS 3063
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS++ V +LVRM PFT++FL Q FD+ DR FHS W +S +M DVKELIP
Sbjct: 3064 HYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIP 3123
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYVSAHLH 1488
EFFYLPEFL N FD G +QNG ++ V LPPWA+ DPR FI +HR+ALE DYVS ++
Sbjct: 3124 EFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDYVSQNIC 3183
Query: 1489 EWIDLIFGYKQQGPAAVEAVNVFH 1560
+WIDL+FGYKQ+G A+V+A+NVFH
Sbjct: 3184 QWIDLVFGYKQKGKASVQAINVFH 3207
Score = 93.2 bits (230), Expect = 8e-19
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 8/169 (4%)
Frame = +1
Query: 2014 CAICPNPKLVITGGTSTVVCVWEMGTSKEKARTLTLKQA--LLGHTDTVTCATASLAYHI 2187
CA P+ + TG V+ + + + ++ L GHT+ +T Y I
Sbjct: 3213 CAWVPDSCQLFTGSKCGVITAYTNRFTSGTPSEIEMESQIHLYGHTEEITSLFVCKPYSI 3272
Query: 2188 IVSGSRDRTCIIWDLNKLSFLTQLRGHRAPVSALCINELTGDIVSC-----AGTHIHVWS 2352
++S SRD TCIIWDLN+L ++ L GH++PV+A+ +E TGDI + G+ + +W+
Sbjct: 3273 MISVSRDGTCIIWDLNRLCYVQSLAGHKSPVTAVSASETTGDIATVCDSAGGGSDLRLWT 3332
Query: 2353 INGNPVVSVNTFTGRSQQIVC-CCVSEMNEWDTQNVIVTGHSDGVVRFW 2496
+NG+ V V+ ++I+C S E + NVI G +G+VR W
Sbjct: 3333 VNGDLVGHVH-----CREIICSVAFSNQPEGVSINVIAGGLENGIVRLW 3376
>ref|XP_001927410.2| PREDICTED: protein FAN [Sus scrofa].
Length = 912
Score = 294 bits (752), Expect = 2e-79
Identities = 170/371 (45%), Positives = 225/371 (60%), Gaps = 8/371 (2%)
Frame = +1
Query: 598 EDIKEVHKRRYLLQPIAVEVFSGD----GRNYLLAFQKGIRNKVYQRFLAVVPSLTDSSE 765
+D++ V++RR+ L P+ +EVF + YL ++ R+ +Y F+A
Sbjct: 233 QDVRRVYRRRHGLMPLGLEVFCTEDDLCSDIYLKFYEPQDRDDLYF-FIATY-------- 283
Query: 766 SVSGQRPNTSVEQGSGLLSTLVGEKSVTQ---RWERGEISNFQYLMHLNTLAGRSYNDLM 936
L V E++ +W+RG +SN+QYL+HLNTLA RS NDL
Sbjct: 284 -----------------LEHHVAERTAESYMLQWQRGHLSNYQYLLHLNTLADRSCNDLS 326
Query: 937 QYPVFPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAY 1116
QYPVFPW+++DY S E+DL+NP TFR+L+KP+GA ERL + RY++ +P +
Sbjct: 327 QYPVFPWVISDYCSAELDLSNPGTFRDLSKPVGALNKERLERLLTRYQEMPEPK-----F 381
Query: 1117 HYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVK 1296
YG+HYSS V YLVR+ P + L LQ G FD ADRMF+S+ E W + D K
Sbjct: 382 MYGSHYSSPGYVLFYLVRIAP--EYMLCLQNGRFDHADRMFNSIAETWRNCLD-GATDFK 438
Query: 1297 ELIPEFFYLP-EFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYV 1473
ELIPEF+ FL NS DLG KQ G + DV LPPWA+ P +F++ R+ALE D+V
Sbjct: 439 ELIPEFYGEDVSFLVNSLRLDLGKKQGGQLVEDVELPPWAQS-PEDFLQKSRDALESDHV 497
Query: 1474 SAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQ 1653
S HLHEWIDL+FGYKQ+G AVEA NVFH L YEG VD+ +I DP ++ A + I FGQ
Sbjct: 498 SEHLHEWIDLVFGYKQKGRDAVEAHNVFHPLTYEGGVDLNSIEDPDEKVALLTQILEFGQ 557
Query: 1654 IPKQLFKKPHP 1686
PKQLF PHP
Sbjct: 558 TPKQLFVTPHP 568
>ref|XP_003361477.1| PREDICTED: neurobeachin-like protein 1-like, partial [Sus scrofa].
Length = 667
Score = 223 bits (567), Expect = 7e-58
Identities = 121/261 (46%), Positives = 150/261 (57%), Gaps = 52/261 (19%)
Frame = +1
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPNGETPAYHYGT 1128
FPWIL DY SEE+DL NP FR+L+KP+G D+ +++Y+++EDP G +HYGT
Sbjct: 202 FPWILQDYTSEELDLNNPSVFRDLSKPIGVVNDKNAKAMREKYENFEDPMGTIDKFHYGT 261
Query: 1129 HYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADVKELIP 1308
HYS++ V YL+R EPFT + ++LQ G FD ADR FHS+ W A N DVKELIP
Sbjct: 262 HYSNSAGVMHYLIRTEPFTTLHIQLQSGRFDCADRQFHSIPATW-QALMDNPYDVKELIP 320
Query: 1309 EFFYLPEFLFNSNNFDLGCKQNGTK-LGDVILPPWAKGDPREFIRVHREA---------- 1455
EFFY PEFL N N F+LG Q + + DVILP WAK +FI HR+A
Sbjct: 321 EFFYFPEFLENQNKFNLGRLQVSKEVVNDVILPKWAK-SAEDFIYKHRKALSQKISFSRG 379
Query: 1456 -----------------------------------------LECDYVSAHLHEWIDLIFG 1512
LE +YVSAHLHEWIDLIFG
Sbjct: 380 ISSRVARLLTWQPRTPLGCKSGSFYTFLRLKAANCRCHFCRLESEYVSAHLHEWIDLIFG 439
Query: 1513 YKQQGPAAVEAVNVFHHLFYE 1575
YKQ+GPAAVEA+NVF++ YE
Sbjct: 440 YKQRGPAAVEALNVFYYCSYE 460
>ref|XP_003361610.1| PREDICTED: neurobeachin-like, partial [Sus scrofa].
Length = 260
Score = 110 bits (276), Expect = 4e-24
Identities = 62/146 (42%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Frame = +1
Query: 595 YEDIKEVHKRRYLLQPIAVEVFSGDGRNYLLAF--QKGIRNKVYQRFLAVVPSLTDSSES 768
+ +I+ V RRYLLQ A+EVF + + + F Q ++ VY +P + +
Sbjct: 124 FSEIRAVFSRRYLLQNTALEVFMANRTSVMFNFPDQATVKKVVYS-----LPRVGVGTSY 178
Query: 769 VSGQRPNTSVEQGSGLLSTLVGEKSVTQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPV 948
Q S+ L + ++TQRW+R EISNF+Y M LNT+AGR+YNDL QYPV
Sbjct: 179 GLPQARRISLATPRQLYKS----SNMTQRWQRREISNFEYFMFLNTIAGRTYNDLNQYPV 234
Query: 949 FPWILADYDSEEVDLTNPKTFRNLAK 1026
FPW+L +Y+SEE+DLT P FR+L+K
Sbjct: 235 FPWVLTNYESEELDLTLPGNFRDLSK 260
>ref|XP_003130974.2| PREDICTED: neurobeachin [Sus scrofa].
Length = 3207
Score = 107 bits (268), Expect = 3e-23
Identities = 64/155 (41%), Positives = 83/155 (53%), Gaps = 15/155 (9%)
Frame = +1
Query: 1441 VHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKET 1620
+ + ALE ++VS LH+WIDLIFGYKQ+GP AV A+NVFH+L YEG V++ +I DP+
Sbjct: 3037 LRQPALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTYEGSVNLDSITDPVLRE 3096
Query: 1621 ATIGFINNFGQIPKQLFKKPHPPKRVRSRL--------------NGDNAGISVPPGCTSD 1758
A I NFGQ P QL +PHPP+ L A +SVP
Sbjct: 3097 AMEAQIQNFGQTPSQLLIEPHPPRSSAMHLMLLFCEERERRPDCRDHVAELSVP------ 3150
Query: 1759 KIFFHHLDNLRPSLTPVKE-LKEPVGQIVCTDKGI 1860
HLDN+ P L KE + E +V +K I
Sbjct: 3151 -----HLDNVNPLLLEYKEQIAEAWAIVVLEEKAI 3180
>ref|XP_003131704.2| PREDICTED: myotubularin-related protein 4-like [Sus scrofa].
Length = 1319
Score = 70.5 bits (171), Expect = 6e-12
Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Frame = +1
Query: 2863 PHPSPVEVRNYNRLKPGYRWERQLVFRSKLTMHTAFD-RKDNAHPAE--------ITALG 3015
P P+ V +++ GY+ E + + R + D R A PAE T L
Sbjct: 1139 PFPTDVIQHRLRQIEAGYKQEVEQLRRQVRELQMRLDIRHCCAPPAEPPMDYEDDFTCLK 1198
Query: 3016 VS---------KDHSRILVGDSRGRVFSWSVSDQPGRSAADHWVKDEGGDSCSGCSVRFS 3168
S DHS + ++ SW D+ + WV D C C F
Sbjct: 1199 ESDGSDTEDFGSDHSEDCLSEA-----SWEPVDKK-ETEVTRWVPDHMASHCYNCDCEFW 1252
Query: 3169 LTERRHRCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNCYYNLQHER 3315
L +RRH CRNCG +FC C + I ++ PV VC +CY ++Q R
Sbjct: 1253 LAKRRHHCRNCGNVFCAGCCHLKLPIPDQQLYDPVLVCNSCYEHIQVSR 1301
>ref|XP_003128863.2| PREDICTED: lateral signaling target protein 2 homolog [Sus scrofa].
Length = 862
Score = 66.6 bits (161), Expect = 8e-11
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +1
Query: 3115 WVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQSEIKRLKISSPVRVCQNCY 3294
WV DE C+ C F++ R+H CR+CG++FC +CS + + R PVRVC +CY
Sbjct: 789 WVPDEACGFCTACKAPFTVIRRKHHCRSCGKIFCSRCSPHSAPLPRYGQVKPVRVCTHCY 848
>ref|XP_003126762.2| PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like [Sus
scrofa].
Length = 432
Score = 65.5 bits (158), Expect = 2e-10
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +1
Query: 3091 PGRSAADHWVKDEGGDSCSGCSVRFSLTERRHRCRNCGQLFCQKCSRFQSEIKRLKISSP 3270
P S A W+ D C C+ F+LT RRH CR CG++ CQ CS + + LK + P
Sbjct: 213 PLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLK-NQP 271
Query: 3271 VRVCQNCYYNLQ 3306
RVC++CY LQ
Sbjct: 272 ARVCEHCYQELQ 283
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 78,788,438
Number of extensions: 2128551
Number of successful extensions: 9959
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 9655
Number of HSP's successfully gapped: 45
Length of query: 1106
Length of database: 11,343,932
Length adjustment: 110
Effective length of query: 996
Effective length of database: 8,605,262
Effective search space: 8570840952
Effective search space used: 8570840952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000728
(3320 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 519 e-144
>Sscrofa_Chr08
|| Length = 148491826
Score = 519 bits (262), Expect = e-144
Identities = 262/262 (100%)
Strand = Plus / Plus
Query: 2586 agggcaagaagcccaggacgaggacagcagcgattccgaggcggaggagcagagcatcag 2645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143409307 agggcaagaagcccaggacgaggacagcagcgattccgaggcggaggagcagagcatcag 143409366
Query: 2646 ccaggaccccaaggacacgcccagccagcccagcagcaccagccacaggccccgggcggc 2705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143409367 ccaggaccccaaggacacgcccagccagcccagcagcaccagccacaggccccgggcggc 143409426
Query: 2706 ctcttgccgagccacggccacctggtgcaatgacagcggctccgacgactccaggcgctg 2765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143409427 ctcttgccgagccacggccacctggtgcaatgacagcggctccgacgactccaggcgctg 143409486
Query: 2766 gtccgaccagctgagcctcgatgagagggacggcttcatacttgtgaactattcggaggg 2825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143409487 gtccgaccagctgagcctcgatgagagggacggcttcatacttgtgaactattcggaggg 143409546
Query: 2826 ccgggcccgggctcatctgcag 2847
||||||||||||||||||||||
Sbjct: 143409547 ccgggcccgggctcatctgcag 143409568
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Plus
Query: 1451 aggctttggaatgtgattatgtgagtgcccatctgcatgagtggattgacctcatcttcg 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143394261 aggctttggaatgtgattatgtgagtgcccatctgcatgagtggattgacctcatcttcg 143394320
Query: 1511 gctataagcagcaaggccccgctgccgtggaagctgtcaacgtcttccaccatcttttct 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143394321 gctataagcagcaaggccccgctgccgtggaagctgtcaacgtcttccaccatcttttct 143394380
Query: 1571 acgaggggcaggtggacatctacaacataaatgacccgctgaaggagacggccaccatag 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143394381 acgaggggcaggtggacatctacaacataaatgacccgctgaaggagacggccaccatag 143394440
Query: 1631 gcttcatcaacaactttggccagatccctaaacag 1665
|||||||||||||||||||||||||||||||||||
Sbjct: 143394441 gcttcatcaacaactttggccagatccctaaacag 143394475
Score = 381 bits (192), Expect = e-102
Identities = 198/200 (99%)
Strand = Plus / Plus
Query: 3024 ggaccacagtcggatcctcgtgggtgacagtcgaggccgggtcttcagctggtctgtgag 3083
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 143410648 ggaccacagtcggatcctcgtgggtgacagccgaggccgggtcttcagctggtctgtgag 143410707
Query: 3084 tgaccagccgggccgctctgccgccgaccattgggtgaaggacgaaggaggggacagctg 3143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143410708 tgaccagccgggccgctctgccgccgaccattgggtgaaggacgaaggaggggacagctg 143410767
Query: 3144 ctcgggctgctcagtgcggttctctctcacagagaggcggcaccgttgcaggaactgcgg 3203
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 143410768 ctcgggctgctcagtgcggttctctctcacagagaggcggcaccattgcaggaactgcgg 143410827
Query: 3204 tcagctcttctgccagaagt 3223
||||||||||||||||||||
Sbjct: 143410828 tcagctcttctgccagaagt 143410847
Score = 355 bits (179), Expect = 1e-94
Identities = 182/183 (99%)
Strand = Plus / Plus
Query: 2308 ggggacatcgtgtcctgcgccggcacgcacatccacgtgtggagcatcaacgggaacccc 2367
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143405314 ggggacatcgtgtcctgtgccggcacgcacatccacgtgtggagcatcaacgggaacccc 143405373
Query: 2368 gtcgtgagcgtgaacacgttcacgggccggagccagcagatcgtgtgctgctgcgtgtcg 2427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143405374 gtcgtgagcgtgaacacgttcacgggccggagccagcagatcgtgtgctgctgcgtgtcg 143405433
Query: 2428 gagatgaacgagtgggacacacagaacgtcatcgtcacggggcactcggacggagtggtc 2487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143405434 gagatgaacgagtgggacacacagaacgtcatcgtcacggggcactcggacggagtggtc 143405493
Query: 2488 cgg 2490
|||
Sbjct: 143405494 cgg 143405496
Score = 341 bits (172), Expect = 2e-90
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 35 agaaacctgctcggtacagaagggccataagttatgacagtaaagaatactacatgcgac 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143369635 agaaacctgctcggtacagaagggccataagttatgacagtaaagaatactacatgcgac 143369694
Query: 95 tagcctccggcaacccagccattgtccaagatgccattgtagagagttccgaaggtgaag 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143369695 tagcctccggcaacccagccattgtccaagatgccattgtagagagttccgaaggtgaag 143369754
Query: 155 ctacccagcaagaaccagagcatggcgaagatacgattgccaaagtcaaagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143369755 ctacccagcaagaaccagagcatggcgaagatacgattgccaaagtcaaagg 143369806
Score = 335 bits (169), Expect = 9e-89
Identities = 176/177 (99%), Gaps = 1/177 (0%)
Strand = Plus / Plus
Query: 2132 tgcttggccacacggatactgtcacctgtgccaccgcgtcattagcctatcacataatcg 2191
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 143401716 tgcttggccacacggatactgtcacctgtgccac-gcgtcattagcctatcacataatcg 143401774
Query: 2192 tcagtggatcccgcgaccgaacctgcatcatttgggatctgaacaaactgtcgttcctga 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143401775 tcagtggatcccgcgaccgaacctgcatcatttgggatctgaacaaactgtcgttcctga 143401834
Query: 2252 cccagctccgaggccaccgggctcccgtttctgctctttgtatcaatgaattaacag 2308
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143401835 cccagctccgaggccaccgggctcccgtttctgctctttgtatcaatgaattaacag 143401891
Score = 329 bits (166), Expect = 6e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 204 aggactggtgaagccgcctctcaaacggtctcgctctgcgcctgacgggggcgacgagga 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143372245 aggactggtgaagccgcctctcaaacggtctcgctctgcgcctgacgggggcgacgagga 143372304
Query: 264 gacgcaggagcagctccaggaccaggtggccgagggcagctccatggaggaggaggagaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143372305 gacgcaggagcagctccaggaccaggtggccgagggcagctccatggaggaggaggagaa 143372364
Query: 324 gacggacaacgccacgctgctgcgcctgctcgaggacggcgagaag 369
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143372365 gacggacaacgccacgctgctgcgcctgctcgaggacggcgagaag 143372410
Score = 313 bits (158), Expect = 3e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1812 agaactcaaagagcccgtgggacagatagtgtgtacggataaaggcatccttgccgtgga 1871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143397935 agaactcaaagagcccgtgggacagatagtgtgtacggataaaggcatccttgccgtgga 143397994
Query: 1872 acagaataaggttctcatcccaccaacttggaacaagacttttgcctggggctacgcaga 1931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143397995 acagaataaggttctcatcccaccaacttggaacaagacttttgcctggggctacgcaga 143398054
Query: 1932 cctcagctgcaggctgggaacctacgagtcagacaagg 1969
||||||||||||||||||||||||||||||||||||||
Sbjct: 143398055 cctcagctgcaggctgggaacctacgagtcagacaagg 143398092
Score = 313 bits (158), Expect = 3e-82
Identities = 161/162 (99%)
Strand = Plus / Plus
Query: 1967 aggcagtgaccgtgtatgagtgtttgtccgagtggggccagatcctctgtgccatctgcc 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143399200 aggcagtgaccgtgtatgagtgtttgtccgagtggggccagatcctctgtgccatctgcc 143399259
Query: 2027 ccaaccccaagctggtcatcacgggcggaacaagcaccgtcgtgtgtgtgtgggagatgg 2086
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 143399260 ccaaccccaagctggtcatcacgggcggaacaagcactgtcgtgtgtgtgtgggagatgg 143399319
Query: 2087 gcacctccaaggaaaaggccaggacgctcaccctcaagcagg 2128
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143399320 gcacctccaaggaaaaggccaggacgctcaccctcaagcagg 143399361
Score = 299 bits (151), Expect = 5e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 368 agatccaacacatgtaccgctgtgctcgagtccagggcctggataccagtgaggggctgc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143375359 agatccaacacatgtaccgctgtgctcgagtccagggcctggataccagtgaggggctgc 143375418
Query: 428 ttctgtttggtaaagagcatttttatgtgatcgatggatttacaatgacagcaaccaggg 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143375419 ttctgtttggtaaagagcatttttatgtgatcgatggatttacaatgacagcaaccaggg 143375478
Query: 488 aaataagagatattgaaaccttacctccaaa 518
|||||||||||||||||||||||||||||||
Sbjct: 143375479 aaataagagatattgaaaccttacctccaaa 143375509
Score = 299 bits (151), Expect = 5e-78
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1663 cagctgtttaaaaaacctcatccgcccaagcgcgtgaggagtcgactcaacggagacaac 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143396806 cagctgtttaaaaaacctcatccgcccaagcgcgtgaggagtcgactcaacggagacaac 143396865
Query: 1723 gcgggcatctcggtcccaccaggatgtacgagtgacaagatcttttttcatcatctagac 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143396866 gcgggcatctcggtcccaccaggatgtacgagtgacaagatcttttttcatcatctagac 143396925
Query: 1783 aacttgaggccttctctcacacctgtaaaag 1813
|||||||||||||||||||||||||||||||
Sbjct: 143396926 aacttgaggccttctctcacacctgtaaaag 143396956
Score = 272 bits (137), Expect = 1e-69
Identities = 151/158 (95%)
Strand = Plus / Plus
Query: 1204 cagggaggccactttgacctggctgaccggatgtttcacagtgtccgcgaggcctggtac 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143387728 cagggaggccactttgacctggctgaccggatgtttcacagtgtccgcgaggcctggtac 143387787
Query: 1264 tcagcatccaagcacaacatggcagacgtgaaggaactgatcccagaannnnnnnactta 1323
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 143387788 tcagcatccaagcacaacatggcagacgtgaaggaactgatcccagaatttttttactta 143387847
Query: 1324 ccagaattcctgttcaattccaacaactttgatctagg 1361
||||||||||||||||||||||||||||||||||||||
Sbjct: 143387848 ccagaattcctgttcaattccaacaactttgatctagg 143387885
Score = 240 bits (121), Expect = 4e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 980 aggaggtagatcttactaatcccaagacatttagaaacctggcaaagccaatgggcgcac 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143385179 aggaggtagatcttactaatcccaagacatttagaaacctggcaaagccaatgggcgcac 143385238
Query: 1040 agacagatgaacgactcgctcagtataagaagcgatataaagactgggaagatcctaatg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143385239 agacagatgaacgactcgctcagtataagaagcgatataaagactgggaagatcctaatg 143385298
Query: 1100 g 1100
|
Sbjct: 143385299 g 143385299
Score = 236 bits (119), Expect = 6e-59
Identities = 122/123 (99%)
Strand = Plus / Plus
Query: 860 agagaggcgaaatcagcaactttcagtatttgatgcacttgaacactttggccggcagat 919
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143383167 agagaggtgaaatcagcaactttcagtatttgatgcacttgaacactttggccggcagat 143383226
Query: 920 cctataatgatctcatgcagtaccctgtcttcccctggatccttgcagattatgactcag 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143383227 cctataatgatctcatgcagtaccctgtcttcccctggatccttgcagattatgactcag 143383286
Query: 980 agg 982
|||
Sbjct: 143383287 agg 143383289
Score = 232 bits (117), Expect = 1e-57
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 519 tatgcatgagccgatcatccccagaggagccaggcagggccccagtcagctcaagagaac 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143377380 tatgcatgagccgatcatccccagaggagccaggcagggccccagtcagctcaagagaac 143377439
Query: 579 gtgcagcatttttgcatatgaagacatcaaagaagttcataagcggcgttatctgctgca 638
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 143377440 gtgcagcatttttgcatatgaagacatcaaagaagtgcataagcggcgttatctgctgca 143377499
Query: 639 g 639
|
Sbjct: 143377500 g 143377500
Score = 226 bits (114), Expect = 6e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 2911 gggtaccggtgggaacggcagctggtgttcaggagcaagctgaccatgcacacggccttt 2970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143410206 gggtaccggtgggaacggcagctggtgttcaggagcaagctgaccatgcacacggccttt 143410265
Query: 2971 gaccggaaggacaatgcacacccggccgagatcaccgccctgggcgtctccaag 3024
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143410266 gaccggaaggacaatgcacacccggccgagatcaccgccctgggcgtctccaag 143410319
Score = 216 bits (109), Expect = 6e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1099 ggagaaactccagcctaccactacgggacccactattcgtctgccatgattgtggcttcg 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143386193 ggagaaactccagcctaccactacgggacccactattcgtctgccatgattgtggcttcg 143386252
Query: 1159 tacctggtacggatggagcccttcacacagatattcctcaggctccagg 1207
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143386253 tacctggtacggatggagcccttcacacagatattcctcaggctccagg 143386301
Score = 196 bits (99), Expect = 5e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 3222 gtgcagccgatttcagtccgaaatcaaacgcttgaaaatctcatccccggtccgcgtttg 3281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143414580 gtgcagccgatttcagtccgaaatcaaacgcttgaaaatctcatccccggtccgcgtttg 143414639
Query: 3282 tcagaactgctactacaatttgcagcacgagaggggttc 3320
|||||||||||||||||||||||||||||||||||||||
Sbjct: 143414640 tcagaactgctactacaatttgcagcacgagaggggttc 143414678
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1359 aggctgtaaacagaatggcaccaagcttggagatgtcatccttccaccctgggcaaaagg 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143393948 aggctgtaaacagaatggcaccaagcttggagatgtcatccttccaccctgggcaaaagg 143394007
Query: 1419 ggacccacgagagttcatccgagtgcaccgagagg 1453
|||||||||||||||||||||||||||||||||||
Sbjct: 143394008 ggacccacgagagttcatccgagtgcaccgagagg 143394042
Score = 188 bits (95), Expect = 1e-44
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 2490 gttttggagaatggaatttttgcaagttcctgaaacaccagctcctgagcctgttgaagt 2549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143406623 gttttggagaatggaatttttgcaagttcctgaaacaccagctcctgagcctgttgaagt 143406682
Query: 2550 gctagaaatgcaggaagactgtccagaggcacaaatagg 2588
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 143406683 gctagaaatgcaggaagactgtccagagacacaaatagg 143406721
Score = 180 bits (91), Expect = 3e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 637 cagcccattgctgtggaagtcttctctggagatggacggaattacctccttgcatttcag 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143378265 cagcccattgctgtggaagtcttctctggagatggacggaattacctccttgcatttcag 143378324
Query: 697 aaaggaattagaaacaaagtctatcaaaggt 727
|||||||||||||||||||||||||||||||
Sbjct: 143378325 aaaggaattagaaacaaagtctatcaaaggt 143378355
Score = 165 bits (83), Expect = 2e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 724 aggtttttggctgtagtgccatctctaactgacagttcagagtctgtatctgggcaacga 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143380053 aggtttttggctgtagtgccatctctaactgacagttcagagtctgtatctgggcaacga 143380112
Query: 784 ccaaacacaagcgtggagcaggg 806
|||||||||||||||||||||||
Sbjct: 143380113 ccaaacacaagcgtggagcaggg 143380135
Score = 111 bits (56), Expect = 3e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 806 gatctggattgcttagcactctggttggagagaaatctgtgactcagagatgggag 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143382844 gatctggattgcttagcactctggttggagagaaatctgtgactcagagatgggag 143382899
Score = 71.9 bits (36), Expect = 2e-09
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 cagcctgagacacccgatgatatcattcctcaaaag 36
||||||||||||||||||||||||||||||||||||
Sbjct: 143367343 cagcctgagacacccgatgatatcattcctcaaaag 143367378
Score = 71.9 bits (36), Expect = 2e-09
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 2877 tgtcgaagtgcggaactacaacagattgaagcctgg 2912
||||||||||||||||||||||||||||||||||||
Sbjct: 143409598 tgtcgaagtgcggaactacaacagattgaagcctgg 143409633
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 86,354,979
Number of extensions: 165
Number of successful extensions: 165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 25
Length of query: 3320
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 3298
Effective length of database: 2,808,408,574
Effective search space: 9262131477052
Effective search space used: 9262131477052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 19 (38.2 bits)
S2: 30 (60.0 bits)