Animal-Genome cDNA 20110601C-000770


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000770
         (1083 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru...   463   e-130
Alignment   gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru...   455   e-128
Alignment   gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru...   452   e-128
Alignment   gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ...   451   e-127
Alignment   gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].                   450   e-127
Alignment   gi|NP_001108327.1| major histocompatibility complex, class I, A...   443   e-125
Alignment   gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].      444   e-125
Alignment   gi|NP_001035644.1| major histocompatibility complex, class I, A...   444   e-125
Alignment   gi|NP_001099086.1| non-classical MHC class I antigen [Bos tauru...   443   e-124
Alignment   gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp...   442   e-124

>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
          Length = 363

 Score =  463 bits (1191), Expect = e-130
 Identities = 221/302 (73%), Positives = 244/302 (80%)
 Frame = +3

Query: 24  LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
           +R+MGP                    HSL YFYTAVSRP  G+ RF  VGYVDDTQFVRF
Sbjct: 1   MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
           DSDAPN +MEPRA+W++QEGPEYWDRET+ SK+TAQ +RV LN LRGYYNQSEAGSHTLQ
Sbjct: 61  DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120

Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
            MYGCY+GPDG L RG+ Q  YDG DYLALNEDLRSWTA +  AQISKRK EAA VAE +
Sbjct: 121 LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180

Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
           R+YL+GRCVE LRRYLE GKDTL RA+PPK HVTRHP S   VTLRCWALGFYP+EISLT
Sbjct: 181 RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240

Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300

Query: 924 AQ 929
            Q
Sbjct: 301 PQ 302


>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
          Length = 361

 Score =  455 bits (1170), Expect(2) = e-128
 Identities = 214/276 (77%), Positives = 235/276 (85%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YFYT VSRP  G+ RF  VGYVDDTQFVRFDSDA + + EPR  W++QEGPEYWDR
Sbjct: 27  HSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYWDR 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+  K+ AQT+RV+LN L GYYNQSEAGSHTLQ MYGC + PDG  LRGY QDAYDG D
Sbjct: 87  ETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDGRD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALN+DLRSWTAAD AAQI+KRKWEAA  AE  R+YL+GRCVE LRRYLE GKDTL RA
Sbjct: 147 YIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLLRA 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVTRHPSSD  VTLRCWALGFYP+EISLTWQ  G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           KWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P Q
Sbjct: 267 KWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEPPQ 302



 Score = 23.9 bits (50), Expect(2) = e-128
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KG  YTQAA SDS Q
Sbjct: 335  EKGRIYTQAASSDSAQ 350


>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
          Length = 358

 Score =  452 bits (1163), Expect(2) = e-128
 Identities = 214/276 (77%), Positives = 235/276 (85%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF TAVSRP  G+ RF  VGYVDDTQF RFDSDAPN + EPR  W++QEG EYWDR
Sbjct: 24  HSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYWDR 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
            T+I K+TAQT+RV LN LRGYYNQSEAGSHTLQ M GC +GPDG LLRG+ Q  YDG +
Sbjct: 84  NTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDGRN 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAAD AAQI+KRKWEAA  AEGER+Y++GRCVE LRRYLE GKD L RA
Sbjct: 144 YIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALLRA 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S+  VTLRCWALGFYP+EISLTWQREG+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           KWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q
Sbjct: 264 KWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQ 299



 Score = 24.3 bits (51), Expect(2) = e-128
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KG  YTQAA SDS Q
Sbjct: 332  EKGRIYTQAASSDSTQ 347


>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
          Length = 398

 Score =  451 bits (1159), Expect(2) = e-127
 Identities = 213/276 (77%), Positives = 235/276 (85%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YFYTAVSRP  G+ RF IVGYVDDT+FVRFDSDAP+ +MEPRA+W++QEGPEYWD+
Sbjct: 52  HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+ +K+ AQT+R +LN+LRGYYNQSEAGSHTLQ MYGC +GPDG LLRGY Q  YDG D
Sbjct: 112 ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAAD AAQISKRK EAA  A   R YL GRCVESLRRYLE GK+TL RA
Sbjct: 172 YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP+EI LTWQ  G+DQ+QDMELVETRP GDG FQ
Sbjct: 232 DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P Q
Sbjct: 292 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ 327



 Score = 23.9 bits (50), Expect(2) = e-127
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KG +YTQA+ SDS Q
Sbjct: 360  EKGRTYTQASSSDSAQ 375


>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
          Length = 359

 Score =  450 bits (1158), Expect(2) = e-127
 Identities = 212/276 (76%), Positives = 238/276 (86%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YFYTAVSRP  G+ RF IVGYVDDTQFVRFDSDA + ++EPRA+W++QEGPEYWD+
Sbjct: 24  HSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYWDQ 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+ +K+ AQ +R+ LN LRGYYNQSEAGSHTLQ MYGC +GPDG LLRG+ Q  Y+G D
Sbjct: 84  ETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAAD AAQISKRKWEAA+VAE +R+YL+G CVE L RYLE GKDTL RA
Sbjct: 144 YIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLLRA 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           KW ALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q
Sbjct: 264 KWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ 299



 Score = 24.3 bits (51), Expect(2) = e-127
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 1010 LEERSAQVKKGGSYTQAAGSDSDQ 1081
            +++RS +  KGG+Y QA+ SDS Q
Sbjct: 327  MKKRSGE--KGGNYIQASRSDSAQ 348


>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 363

 Score =  443 bits (1140), Expect(2) = e-125
 Identities = 211/276 (76%), Positives = 235/276 (85%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YFYTAVSRP  G+ RF  VGYVDDTQFVRFDSDAP+ ++EP A+W++QEGPEYW +
Sbjct: 28  HSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQEGPEYWHQ 87

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQ +K+TAQ +RV LN LRGYYNQSEAGSHT+Q MYGC +GPDGLL RGY Q AYDG D
Sbjct: 88  ETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGLL-RGYDQFAYDGRD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAAD AAQ++K   EAA  A   R YL+G+CVE LRRYL  GKDTL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTGKDTLLRA 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPKTHV  HP SD  VTLRCWALGFYP+EISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P Q
Sbjct: 267 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ 302



 Score = 24.3 bits (51), Expect(2) = e-125
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KG  Y+QA+ SDSDQ
Sbjct: 337  EKGRIYSQASSSDSDQ 352


>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
          Length = 361

 Score =  444 bits (1141), Expect = e-125
 Identities = 214/302 (70%), Positives = 235/302 (77%)
 Frame = +3

Query: 24  LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
           +R+MGP                    HS+ YF TAVSRP  G+ ++  VGYVDDTQFVRF
Sbjct: 1   MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60

Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
           DSDAPN +MEPRA+W++QEGPEYWD ETQ +K   Q +RV+LN LRGYYNQSEAGSHTLQ
Sbjct: 61  DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120

Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
            M GC +GPDG L RG+ Q  YDG DYLALNEDLRSWTAAD  AQISKRK EAA  AE  
Sbjct: 121 WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180

Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
           R Y++G CVE LRRYLE GKDTL RA+PPK HVT HP SD  VTLRCWALGFYPKEISLT
Sbjct: 181 RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240

Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300

Query: 924 AQ 929
            Q
Sbjct: 301 PQ 302


>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
          Length = 362

 Score =  444 bits (1141), Expect = e-125
 Identities = 214/302 (70%), Positives = 240/302 (79%)
 Frame = +3

Query: 24  LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
           +R++GP                    HSL YFYTAVSRP  G+ RF  VGYVDDTQFVRF
Sbjct: 1   MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60

Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
           DSDAP+ ++EP A+W++QEGPEYW +ETQ +K+TAQ +RV LN LRGYYNQSEAGSHT+Q
Sbjct: 61  DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120

Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
            MYGC +GPDGLL RGY Q AYDG DY+ALNEDLRSWTAAD AAQ++K   EAA  A   
Sbjct: 121 EMYGCDVGPDGLL-RGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179

Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
           R YL+G+CVE LRRYL  GKDTL RA+PPKTHV  HP SD  VTLRCWALGFYP EISLT
Sbjct: 180 RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239

Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240 WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299

Query: 924 AQ 929
            Q
Sbjct: 300 PQ 301


>ref|NP_001099086.1| non-classical MHC class I antigen [Bos taurus].
          Length = 342

 Score =  443 bits (1140), Expect = e-124
 Identities = 206/274 (75%), Positives = 232/274 (84%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHS+ YF TAVSRP  G+ RF  VGYVDDTQFVRFDSD P+ +MEPRA+W++ EGPEYWD
Sbjct: 23  PHSMRYFLTAVSRPGLGEPRFITVGYVDDTQFVRFDSDRPDPRMEPRARWVEDEGPEYWD 82

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
           +ET+I KE  QT+R +LN L GYYNQSEAGSHT+Q M+GC +G DG LLRGY+Q AYDG 
Sbjct: 83  QETRIQKENTQTFRANLNTLLGYYNQSEAGSHTIQWMHGCGVGSDGRLLRGYNQHAYDGK 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DYLALNEDLRSWTAAD AAQI+KRKWEA   AE  R+YL+G+CV+ LRR+LE GKDTL R
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWEATGAAERFRNYLEGKCVKLLRRHLENGKDTLLR 202

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           A+PP  HVT HP S+  VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGTF
Sbjct: 203 ADPPMAHVTHHPISEREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTF 262

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
           QKWAAL VP GEEQ YTC VQHEGLQEPLTLRWD
Sbjct: 263 QKWAALAVPSGEEQRYTCRVQHEGLQEPLTLRWD 296


>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6
           precursor [Bos taurus].
          Length = 360

 Score =  442 bits (1136), Expect = e-124
 Identities = 207/276 (75%), Positives = 232/276 (84%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HS+ YF TAVSRP  G+ R+  VGYVDDTQFVRFDSDA N +MEPR +W++QEGPEYWDR
Sbjct: 24  HSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQEGPEYWDR 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
            T+ +K  AQ++RV LN LRGYYNQSEAGSHTLQ M GCY+GPDG LLRG+ Q  YDG D
Sbjct: 84  NTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQYGYDGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           YLALNEDLRSWTAAD  AQI+KRKWEA   AE +R+YL+G CVE LRR++E GKDTL RA
Sbjct: 144 YLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENGKDTLLRA 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP SD  VTLRCWALGFYP+EISLTWQ  G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           KWAALVVP GEEQ YTC VQHEGLQEPLTL+W+P Q
Sbjct: 264 KWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQ 299


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,748,291
Number of extensions: 901602
Number of successful extensions: 5366
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 5279
Number of HSP's successfully gapped: 80
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000770
         (1083 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].      453   e-127
Alignment   gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].      436   e-122
Alignment   gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].      411   e-115
Alignment   gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].          358   6e-99
Alignment   gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris].            358   6e-99
Alignment   gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein...   199   3e-51
Alignment   gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s...   133   3e-31
Alignment   gi|NP_001124302.1| CD1b molecule [Canis lupus familiaris].            69   1e-11
Alignment   gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati...    69   1e-11
Alignment   gi|XP_545727.2| PREDICTED: similar to T-cell surface glycoprote...    68   2e-11

>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
          Length = 361

 Score =  453 bits (1165), Expect = e-127
 Identities = 211/275 (76%), Positives = 236/275 (85%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YFYT+VSRP RGD RF  VGYVDDTQFVRFDSDA   +MEPRA W++QEGPEYWDR
Sbjct: 27  HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDR 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+  KETAQ YRV L+ LRGYYNQSEAGSHT Q MYGC LGP G LLRGY QDAYDGAD
Sbjct: 87  ETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGAD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAAD AAQI++RKWEAA  AE +R+YL+  CVE LRRYLEMGK+TL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRA 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           EPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 EPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
           KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS 301


>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
          Length = 358

 Score =  436 bits (1121), Expect = e-122
 Identities = 205/275 (74%), Positives = 233/275 (84%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YFYT+VSRP RGD RF  VGYVDDTQFVRFDSDA   +MEPRA W++QEGPEYWD 
Sbjct: 24  HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYWDP 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           +T+  KETA+T+RV L+ LRGYYNQSEAGSHT Q M+GC LGP G LLRGY QDAYDGAD
Sbjct: 84  QTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDGAD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAAD AAQI++RK EAA  A   R+YL+  CVE LRRYLEMGK+TL RA
Sbjct: 144 YIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLLRA 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           EPP T VTRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 204 EPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
           KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+
Sbjct: 264 KWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEPS 298


>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
          Length = 361

 Score =  411 bits (1057), Expect = e-115
 Identities = 190/275 (69%), Positives = 229/275 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL +F+TAVSRP RGD  +  VGYVDDTQF+RF+SDA + K+EPRA+W++QEGPE+W+ 
Sbjct: 27  HSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEE 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           +T+I+K  AQT R +L    GYYNQSEAGSHT Q   GC +GPDG LLRGY Q AYDGAD
Sbjct: 87  QTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGAD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           YLAL+EDLRSWTAAD AAQI++RKWEAA  A+  R YLQG CV+SL +YLE GK+TLQ  
Sbjct: 147 YLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLT 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK ++TRHP SD  VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 DPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
           KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS 301


>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
          Length = 381

 Score =  358 bits (918), Expect = 6e-99
 Identities = 164/275 (59%), Positives = 207/275 (75%), Gaps = 1/275 (0%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL +  T VSRP  G+ R + V YVDDT F RF+S+    + EP  +W++QEGPEYW+ 
Sbjct: 32  HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91

Query: 282 ETQISKETAQTYRVSLNNL-RGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
            T  S+   Q  R +LN + + Y NQS  GSHT Q + GC +GPDG  LRGY + AYDG 
Sbjct: 92  RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY+ L+EDLRSW   D  AQI++RKW+AA VAE  +++L+GRC+E LRR+LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           A+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+P
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEP 306


>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
          Length = 381

 Score =  358 bits (918), Expect = 6e-99
 Identities = 164/275 (59%), Positives = 207/275 (75%), Gaps = 1/275 (0%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL +  T VSRP  G+ R + V YVDDT F RF+S+    + EP  +W++QEGPEYW+ 
Sbjct: 32  HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91

Query: 282 ETQISKETAQTYRVSLNNL-RGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
            T  S+   Q  R +LN + + Y NQS  GSHT Q + GC +GPDG  LRGY + AYDG 
Sbjct: 92  RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY+ L+EDLRSW   D  AQI++RKW+AA VAE  +++L+GRC+E LRR+LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           A+PPKT VTR P S+  VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+P
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEP 306


>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
           (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
           familiaris].
          Length = 315

 Score =  199 bits (507), Expect = 3e-51
 Identities = 106/280 (37%), Positives = 155/280 (55%), Gaps = 3/280 (1%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           P+SLS+FYT +SRP  G   F    Y++D  F  +DS+    K  PR  W Q EG E W+
Sbjct: 27  PYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSET--GKAIPRYPWSQMEGIEDWE 84

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
           +E+++ K     + V+L ++  YY   E GSHT Q M+GC L  +      + + AYDG 
Sbjct: 85  KESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRYAYDGR 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANV-AEGERSYLQGRCVESLRRYLEMGKDTLQ 635
           +++  N+++ +W   D AA  +K+KWEA  V  +  ++YL+  C   L+RYLE GK  L 
Sbjct: 143 NFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYLD 202

Query: 636 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 815
           R EPP   +T H + +   TL+CW  GFYP+EI L W  +  D  +        PSG+ T
Sbjct: 203 RQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSGNNT 261

Query: 816 FQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPAQ 929
           +Q W  +   P +    SY+C V+H  L +PLT+ WD  Q
Sbjct: 262 YQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301


>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
           (FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
           transporter, alpha chain) [Canis familiaris].
          Length = 354

 Score =  133 bits (334), Expect = 3e-31
 Identities = 85/271 (31%), Positives = 132/271 (48%), Gaps = 2/271 (0%)
 Frame = +3

Query: 105 SLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWI-QQEGPEYWDR 281
           SL Y  TAVS P  G   F+  G++   Q++ +++    A+ EP   W+ + +   YW++
Sbjct: 28  SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVSWYWEK 85

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET   +     +  +L  L       + G +TLQ + GC LGPD   +    + A +G D
Sbjct: 86  ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138

Query: 462 YLALNEDLRSWTAADMAAQ-ISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           ++  +  L +W       + +SKR  + A     ER++L   C + L  +LE G+  L+ 
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
            EPP   +   P S     L C A  FYP E+ L + R G          +  P+GDG+F
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 911
             W++L V  G+E  Y C VQH GL +PLT+
Sbjct: 257 HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTV 287


>ref|NP_001124302.1| CD1b molecule [Canis lupus familiaris].
          Length = 337

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 74/267 (27%), Positives = 111/267 (41%), Gaps = 18/267 (6%)
 Frame = +3

Query: 171 GYVDDTQFVRFDSDAPNAK-MEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGY 347
           G++ D Q   +D+DA  A  ++P ++        + D E    +E  Q Y      L G+
Sbjct: 52  GWLGDVQIHGWDADAGRAVFLKPWSKG------NFSDEEMVELEEIIQVY------LTGF 99

Query: 348 YNQSEAGSHTLQRMY--------GCYLGPDG---LLLRGYHQDAYDGADYLALNEDLRSW 494
             + +  +   Q  Y        GC L PD      LRG    A  G D+L+L     S 
Sbjct: 100 ILEVQDHAPEFQMQYPFEIQGVAGCQLHPDSGTESFLRG----ALGGLDFLSLKN--HSC 153

Query: 495 TAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYL----EMGKDTLQRAEPPKTHV 662
             A      ++R  E     EG R   +    E+  R+L    + GK  L+R   P+  +
Sbjct: 154 VPAPEGGSRAQRICELILQYEGIRDIAEKLLFETCPRFLLGLLDAGKAELRRPVRPEAWL 213

Query: 663 TRHPSSDLG-VTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALV 839
           +  PS   G + L C   GFYPK + +TW R G+ + Q     +  P  DGT+   A L 
Sbjct: 214 SAGPSPGPGRLQLVCHVSGFYPKPVWVTWMR-GEQEQQGTRRGDVLPHADGTWYLRATLD 272

Query: 840 VPPGEEQSYTCHVQHEGL-QEPLTLRW 917
           V   E    +C V+H  L  + + L W
Sbjct: 273 VAAQEAAGLSCRVKHSSLGGQDMVLHW 299


>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
           beta chain precursor (MHC class II antigen DMB) [Canis
           familiaris].
          Length = 263

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
 Frame = +3

Query: 636 RAEPPKTHVTRHP--SSDLGVTLRCWALGFYPKEISLTWQREGQD-QSQDMELVETRPSG 806
           R  PP   V +    ++   V L C+  GFYP +++++W++ GQ   S    L   +P+G
Sbjct: 111 RTRPPTVQVAKSTPFNTKESVMLACYVWGFYPADVTISWRKNGQPVPSHSSALNMAQPNG 170

Query: 807 DGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           D T+Q  + L   P  E +YTC V+H G  EP+   W P
Sbjct: 171 DWTYQTVSHLATTPSYEDTYTCVVEHIGAPEPVCEDWTP 209


>ref|XP_545727.2| PREDICTED: similar to T-cell surface glycoprotein CD1e precursor
           (CD1e antigen) (R2G1) [Canis familiaris].
          Length = 300

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
 Frame = +3

Query: 378 LQRMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAAN--- 548
           LQ   GC L   G     +   AY G+D+L+   +  SW  +  A   +++  E  N   
Sbjct: 109 LQMSAGCRLHT-GKASESFLNGAYQGSDFLSFQGN--SWYPSPGAGSRARKVCEMLNRYQ 165

Query: 549 -VAEGERSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 722
            + E  +S +   C + L   LE GK  L R   P+  ++  PS   G + L C   GF+
Sbjct: 166 DIKEIVKSLIGYICPQFLAGILEAGKAELGRQVRPEAWLSADPSPGPGRLRLVCHVSGFH 225

Query: 723 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 899
           PK + +TW R G+ + +     +  P  DGT+   A L V   E    +C V+H  L  +
Sbjct: 226 PKPVRVTWMR-GEQEQRGTRRGDFLPHADGTWYLRATLDVAAREAAGLSCRVKHSSLGGQ 284

Query: 900 PLTLRWD 920
            + L W+
Sbjct: 285 DMVLHWE 291


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,233,642
Number of extensions: 930859
Number of successful extensions: 5286
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5210
Number of HSP's successfully gapped: 26
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000770
         (1083 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ...   443   e-127
Alignment   gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp...   440   e-126
Alignment   gi|NP_005505.2| major histocompatibility complex, class I, B pr...   444   e-126
Alignment   gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1...   445   e-125
Alignment   gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al...   442   e-124
Alignment   gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c...   422   e-118
Alignment   gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c...   415   e-116
Alignment   gi|NP_001091949.1| HLA class I histocompatibility antigen, alph...   407   e-113
Alignment   gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c...   407   e-113
Alignment   gi|NP_001091948.1| HLA class I histocompatibility antigen, alph...   248   7e-66

>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
           [Homo sapiens].
          Length = 365

 Score =  443 bits (1139), Expect(2) = e-127
 Identities = 204/273 (74%), Positives = 232/273 (84%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HS+ YF+T+VSRP RG+ RF  VGYVDDTQFVRFDSDA + KMEPRA WI+QEGPEYWD+
Sbjct: 27  HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQ 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+  K  +QT R +L  LRGYYNQSE GSHT+Q MYGC +GPDG  LRGY QDAYDG D
Sbjct: 87  ETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAADMAAQI+KRKWEA + AE  R YL+GRCV+ LRRYLE GK+TLQR 
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRT 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPKTH+T HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
           KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE 299



 Score = 30.8 bits (68), Expect(2) = e-127
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 1019 RSAQVKKGGSYTQAAGSDSDQ 1081
            R +  +KGGSYTQAA SDS Q
Sbjct: 334  RKSSDRKGGSYTQAASSDSAQ 354


>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
           [Homo sapiens].
          Length = 365

 Score =  440 bits (1131), Expect(2) = e-126
 Identities = 205/273 (75%), Positives = 232/273 (84%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HS+ YF+T+VSRP RG+ RF  VGYVDDTQFVRFDSDA + +MEPRA WI+QEGPEYWD+
Sbjct: 27  HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQ 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+  K  +QT RV L  LRGYYNQSEAGSHT+Q MYGC +G DG  LRGY QDAYDG D
Sbjct: 87  ETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAADMAAQI+KRKWEAA+ AE  R+YL G CVE LRRYLE GK+TLQR 
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRT 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPKTH+T HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
           KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE 299



 Score = 30.8 bits (68), Expect(2) = e-126
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 1019 RSAQVKKGGSYTQAAGSDSDQ 1081
            R +  +KGGSYTQAA SDS Q
Sbjct: 334  RKSSDRKGGSYTQAASSDSAQ 354


>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
           sapiens].
          Length = 362

 Score =  444 bits (1142), Expect(2) = e-126
 Identities = 209/275 (76%), Positives = 233/275 (84%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HS+ YFYT+VSRP RG+ RF  VGYVDDTQFVRFDSDA + + EPRA WI+QEGPEYWDR
Sbjct: 27  HSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDR 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
            TQI K  AQT R SL NLRGYYNQSEAGSHTLQ MYGC +GPDG LLRG+ Q AYDG D
Sbjct: 87  NTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDLRSWTAAD AAQI++RKWEAA  AE  R+YL+G CVE LRRYLE GKD L+RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERA 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPKTHVT HP SD   TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GD TFQ
Sbjct: 207 DPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
           KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPS 301



 Score = 26.6 bits (57), Expect(2) = e-126
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 1019 RSAQVKKGGSYTQAAGSDSDQ 1081
            R +   KGGSY+QAA SDS Q
Sbjct: 334  RKSSGGKGGSYSQAACSDSAQ 354


>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
           [Homo sapiens].
          Length = 366

 Score =  445 bits (1145), Expect = e-125
 Identities = 214/301 (71%), Positives = 238/301 (79%)
 Frame = +3

Query: 24  LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
           +R+M P                    HS+ YF TAVSRP RG+ RF  VGYVDDTQFVRF
Sbjct: 1   MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60

Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
           DSDA + + EPRA W++QEGPEYWDRETQ  K  AQ  RVSL NLRGYYNQSE GSHTLQ
Sbjct: 61  DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120

Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
           RMYGC LGPDG LLRGY Q AYDG DY+ALNEDLRSWTAAD AAQI++RK EAA  AE  
Sbjct: 121 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180

Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
           R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD   TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240

Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300

Query: 924 A 926
           +
Sbjct: 301 S 301


>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
           [Homo sapiens].
          Length = 366

 Score =  442 bits (1136), Expect = e-124
 Identities = 213/301 (70%), Positives = 237/301 (78%)
 Frame = +3

Query: 24  LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
           +R+M P                    HS+ YF TAVSRP RG+ RF  VGYVDDTQFVRF
Sbjct: 1   MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60

Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
           DSDA + + EPRA W++QEGPEYWDRETQ  K  AQ  RVSL NLRGYYNQSE GSHTLQ
Sbjct: 61  DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120

Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
           RM GC LGPDG LLRGY Q AYDG DY+ALNEDLRSWTAAD AAQI++RK EAA  AE  
Sbjct: 121 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180

Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
           R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD   TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240

Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300

Query: 924 A 926
           +
Sbjct: 301 S 301


>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
           [Homo sapiens].
          Length = 338

 Score =  422 bits (1086), Expect = e-118
 Identities = 202/272 (74%), Positives = 224/272 (82%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HS+ YF  AVSRP RG+ RF  +GYVDDTQFVRFDSD+   +MEPRA W++QEGPEYW+ 
Sbjct: 27  HSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYWEE 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+ +K  AQT R++L  LRGYYNQSEA SHTLQ M GC LG DG LLRGY Q AYDG D
Sbjct: 87  ETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDGKD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           YLALNEDLRSWTAAD AAQISKRK EAANVAE  R+YL+G CVE L RYLE GK+ LQRA
Sbjct: 147 YLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRA 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPKTHVT HP  D   TLRCWALGFYP EI LTWQR+G+DQ+QD+ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298


>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor
           [Homo sapiens].
          Length = 358

 Score =  415 bits (1066), Expect(2) = e-116
 Identities = 194/275 (70%), Positives = 225/275 (81%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+T+VSRP RG+ RF  VGYVDDTQFVRFD+DA + +M PRA W++QEG EYWDR
Sbjct: 24  HSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDR 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+ +++TAQ +RV+L  LRGYYNQSEAGSHTLQ M+GC LGPDG  LRGY Q AYDG D
Sbjct: 84  ETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           YL LNEDLRSWTA D AAQIS++K   A+ AE +R+YL+  CVE L +YLE GK+TL   
Sbjct: 144 YLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHL 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           EPPKTHVT HP SD   TLRCWALGFYP EI+LTWQ++G+  +QD ELVETRP+GDGTFQ
Sbjct: 204 EPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
           KWAA+VVP GEEQ YTCHVQHEGL EP+TLRW PA
Sbjct: 264 KWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPA 298



 Score = 23.1 bits (48), Expect(2) = e-116
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 1037 KGGSYTQAAGSDSDQ 1081
            KGGSY++A  SDS Q
Sbjct: 337  KGGSYSKAEWSDSAQ 351


>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
           precursor [Homo sapiens].
          Length = 442

 Score =  407 bits (1045), Expect = e-113
 Identities = 191/273 (69%), Positives = 221/273 (80%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF TAVSRP RG+ R+  V YVDDTQF+RFDSDA   +MEPR  W++QEGP+YW+ 
Sbjct: 24  HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
            T  +K  AQT RV+L NL   YNQSEAGSHTLQ M GC +GPDG LLRGYHQ AYDG D
Sbjct: 84  TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y++LNEDLRSWTAAD  AQI++R +EA   AE  R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
           KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWE 296


>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
           precursor [Homo sapiens].
          Length = 346

 Score =  407 bits (1045), Expect = e-113
 Identities = 191/273 (69%), Positives = 221/273 (80%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF TAVSRP RG+ R+  V YVDDTQF+RFDSDA   +MEPR  W++QEGP+YW+ 
Sbjct: 24  HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
            T  +K  AQT RV+L NL   YNQSEAGSHTLQ M GC +GPDG LLRGYHQ AYDG D
Sbjct: 84  TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y++LNEDLRSWTAAD  AQI++R +EA   AE  R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HV  HP SD   TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
           KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWE 296


>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
           precursor [Homo sapiens].
          Length = 254

 Score =  248 bits (633), Expect = 7e-66
 Identities = 121/181 (66%), Positives = 141/181 (77%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF TAVSRP RG+ R+  V YVDDTQF+RFDSDA   +MEPR  W++QEGP+YW+ 
Sbjct: 24  HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
            T  +K  AQT RV+L NL   YNQSEAGSHTLQ M GC +GPDG LLRGYHQ AYDG D
Sbjct: 84  TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y++LNEDLRSWTAAD  AQI++R +EA   AE  R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203

Query: 642 E 644
           E
Sbjct: 204 E 204


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,381,882
Number of extensions: 900994
Number of successful extensions: 5058
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 4968
Number of HSP's successfully gapped: 79
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000770
         (1083 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al...   412   e-115
Alignment   gi|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 a...   411   e-115
Alignment   gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp...   410   e-114
Alignment   gi|NP_001185489.1| H-2 class I histocompatibility antigen, Q7 a...   410   e-114
Alignment   gi|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alph...   410   e-114
Alignment   gi|XP_003085233.1| PREDICTED: h-2 class I histocompatibility an...   410   e-114
Alignment   gi|XP_003085234.1| PREDICTED: h-2 class I histocompatibility an...   410   e-114
Alignment   gi|XP_003085228.1| PREDICTED: h-2 class I histocompatibility an...   410   e-114
Alignment   gi|XP_003085229.1| PREDICTED: h-2 class I histocompatibility an...   410   e-114
Alignment   gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].    409   e-114

>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
           [Mus musculus].
          Length = 357

 Score =  412 bits (1058), Expect = e-115
 Identities = 192/275 (69%), Positives = 226/275 (82%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHSL YF TAVSRP  G+ RF IVGYVDDTQFVRFDSDA N +MEPRA+WI+QEGPEYW+
Sbjct: 22  PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
           RET  +++  + +RV+L  L GYYNQS   SHTLQ MYGC +GPDG LLRGY Q+AYDG 
Sbjct: 82  RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY++LNEDLRSWTA D+A+QISK K EA + A  +R+YLQG CVE L RYL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           ++PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+P
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEP 296


>ref|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 alpha chain [Mus
           musculus].
          Length = 334

 Score =  411 bits (1056), Expect = e-115
 Identities = 188/272 (69%), Positives = 227/272 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+TAVSRP  G+  F  VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24  HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQI+K   Q++R SL   + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84  ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYLE+GK+TL R 
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLELGKETLLRT 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295


>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
           [Mus musculus].
          Length = 325

 Score =  410 bits (1053), Expect = e-114
 Identities = 189/274 (68%), Positives = 225/274 (82%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HS+ YF T+VSRP  G+ RF IVGYVDDTQFVRFDSDA   +MEPRA W++QEGPEYW+R
Sbjct: 27  HSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYWER 86

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQ +K   Q++ VSL  L GYYNQSE+GSHT+Q MYGC +G DG  LRGY Q AYDG D
Sbjct: 87  ETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRD 146

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTAAD+AA I++RKWE A  AE  R+YL+  CVE L RYLE+GK+TL R 
Sbjct: 147 YIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRT 206

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPKTHVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 266

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 267 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 300


>ref|NP_001185489.1| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 2
           precursor [Mus musculus].
          Length = 310

 Score =  410 bits (1053), Expect = e-114
 Identities = 187/272 (68%), Positives = 227/272 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+TAVSRP  G+  F  VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24  HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQI+K   Q++R SL   + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84  ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R 
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295


>ref|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1
           precursor [Mus musculus].
          Length = 334

 Score =  410 bits (1053), Expect = e-114
 Identities = 187/272 (68%), Positives = 227/272 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+TAVSRP  G+  F  VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24  HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQI+K   Q++R SL   + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84  ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R 
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295


>ref|XP_003085233.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
           chain-like isoform 1 [Mus musculus].
          Length = 334

 Score =  410 bits (1053), Expect = e-114
 Identities = 187/272 (68%), Positives = 227/272 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+TAVSRP  G+  F  VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24  HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQI+K   Q++R SL   + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84  ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R 
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295


>ref|XP_003085234.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
           chain-like isoform 2 [Mus musculus].
          Length = 310

 Score =  410 bits (1053), Expect = e-114
 Identities = 187/272 (68%), Positives = 227/272 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+TAVSRP  G+  F  VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24  HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQI+K   Q++R SL   + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84  ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R 
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295


>ref|XP_003085228.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
           chain-like isoform 1 [Mus musculus].
          Length = 330

 Score =  410 bits (1053), Expect = e-114
 Identities = 187/272 (68%), Positives = 227/272 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+TAVSRP  G+  F  VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 20  HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 79

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQI+K   Q++R SL   + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 80  ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 139

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R 
Sbjct: 140 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 199

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 200 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 259

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 260 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 291


>ref|XP_003085229.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
           chain-like isoform 2 [Mus musculus].
          Length = 310

 Score =  410 bits (1053), Expect = e-114
 Identities = 187/272 (68%), Positives = 227/272 (83%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL YF+TAVSRP  G+  F  VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24  HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQI+K   Q++R SL   + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84  ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R 
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK HVT HP S   VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
           KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295


>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
          Length = 368

 Score =  409 bits (1051), Expect = e-114
 Identities = 189/275 (68%), Positives = 225/275 (81%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHS+ YF TAVSRP  G+  F  VGYVDDTQFVRFD DA N +MEPRA W++QEGPEYW+
Sbjct: 27  PHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYWE 86

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
           RETQI+K   Q ++ SL NL  YYNQS  GSHT QRMYGC LG DG LLRGY Q AYDG+
Sbjct: 87  RETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDGS 146

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY+ALN+DL++WTAAD+AAQI++R+WE   VAE  R+YL+  C+E LRRYLE+GK+TL R
Sbjct: 147 DYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLLR 206

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
            +PPK HVT HP S+  VTLRCWALGFYP +I+LTWQ  G++ +QDMELVETRP+GDGTF
Sbjct: 207 TDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 266

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 267 QKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 301


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,531,725
Number of extensions: 737265
Number of successful extensions: 4058
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 3978
Number of HSP's successfully gapped: 136
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000770
         (1083 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a...   558   e-163
Alignment   gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a...   523   e-152
Alignment   gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].               511   e-149
Alignment   gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].               514   e-148
Alignment   gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].               496   e-143
Alignment   gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].               489   e-141
Alignment   gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa].                  450   e-127
Alignment   gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].               412   e-115
Alignment   gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].               386   e-107
Alignment   gi|XP_003361021.1| PREDICTED: class I histocompatibility antige...   256   2e-68

>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
           chain-like [Sus scrofa].
          Length = 361

 Score =  558 bits (1439), Expect(2) = e-163
 Identities = 265/277 (95%), Positives = 269/277 (97%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWI+QEGPEYWD
Sbjct: 23  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYWD 82

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
           RETQISKETAQTYRV L  LRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGY QDAYDGA
Sbjct: 83  RETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDGA 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DYLALNEDLRSWTAAD AAQI+KRKWEAA+ AEGERSYLQG CVESLR+YLEMGKDTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQR 202

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 299



 Score = 34.7 bits (78), Expect(2) = e-163
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KGGSYTQAAGSDSDQ
Sbjct: 334  EKGGSYTQAAGSDSDQ 349


>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
           chain-like [Sus scrofa].
          Length = 361

 Score =  523 bits (1346), Expect(2) = e-152
 Identities = 248/277 (89%), Positives = 256/277 (92%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHSLSYFYTAVSRPDRGDSRF  VGYVDDTQFVRFD+ APN +MEPR  WIQQEG +YWD
Sbjct: 23  PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 82

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
            ET+  K+ AQTY V LN LRGYYNQSEAGSHTLQ M+GCYLGPDGLLL GY QDAYDGA
Sbjct: 83  EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY+ALNEDLRSWTAADMAAQISKRKWEAA+ AE  RSYLQG CVESLRRYLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 202

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 299



 Score = 34.7 bits (78), Expect(2) = e-152
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KGGSYTQAAGSDSDQ
Sbjct: 334  EKGGSYTQAAGSDSDQ 349


>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
          Length = 361

 Score =  511 bits (1316), Expect(2) = e-149
 Identities = 244/277 (88%), Positives = 254/277 (91%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHSLSYFYTAVSRPD GDSRF  VGYVDDTQFVRFDSDA N +MEPRA WI++EG +YWD
Sbjct: 23  PHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYWD 82

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
            ET+  KETAQ  RV L  LRGYYNQSEAGSHTLQ M+GCYLGPDGLLLRGY QDAYDGA
Sbjct: 83  EETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDGA 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY+ALNEDLRSWTAAD AAQI+KRKWEAA+ AE  RSYLQG CVESLR YLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQR 202

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           A+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 ADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 299



 Score = 34.7 bits (78), Expect(2) = e-149
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KGGSYTQAAGSDSDQ
Sbjct: 334  EKGGSYTQAAGSDSDQ 349


>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
          Length = 364

 Score =  514 bits (1323), Expect(2) = e-148
 Identities = 246/302 (81%), Positives = 260/302 (86%)
 Frame = +3

Query: 24  LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
           +R+ GP                   PHSLSYFYTAVSRPDRGDSRF  VGYVDDTQFVRF
Sbjct: 1   MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60

Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
           DSDAPN +MEPRA WIQQEG +YWDRET+    +AQT RV+L  LRGYYNQSEAGSHT+Q
Sbjct: 61  DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120

Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
            MYGC +GPDGLLLRGY QDAYDGADY+ALNEDLRSWTAAD AAQI+KRKWEAA+ AEGE
Sbjct: 121 VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180

Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
           RSYLQG CVE L++YLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181 RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240

Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300

Query: 924 AQ 929
            Q
Sbjct: 301 PQ 302



 Score = 31.6 bits (70), Expect(2) = e-148
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KGGSYTQAAGSDS Q
Sbjct: 337  EKGGSYTQAAGSDSAQ 352


>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
          Length = 361

 Score =  496 bits (1277), Expect(2) = e-143
 Identities = 235/277 (84%), Positives = 251/277 (90%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHSL YF TAVSRPDRG  RF  VGYVDDTQFVRFDSDAPN +MEPRA WI+QEG EYWD
Sbjct: 23  PHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYWD 82

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
            ET+ +  +AQT+RV+LNNLRGYYNQSEAGSHTLQ MYGC +GPD L LRGY QDAYDGA
Sbjct: 83  EETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDGA 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY+ALNEDLRSWTAAD AAQI+KRKWEAA+ AE  RSYL+G CVE L++YL+MG +TLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQR 202

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 299



 Score = 31.6 bits (70), Expect(2) = e-143
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KGGSYTQAAGSDS Q
Sbjct: 334  EKGGSYTQAAGSDSAQ 349


>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
          Length = 361

 Score =  489 bits (1258), Expect(2) = e-141
 Identities = 232/277 (83%), Positives = 248/277 (89%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHSLSY +T+VSRP RG+ RF  VG VDDT  VRFDSDA   + EPRA WI+QEGPEYWD
Sbjct: 23  PHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYWD 82

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
            ET+ISK+ AQT R +LN LRGYYNQSEA SHT+Q ++GC +GPD LLLR Y QDAYDGA
Sbjct: 83  EETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDGA 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DYLALNEDLRSWTAAD AAQI+KRKWE ANVAE ERSYLQG CVE L++YLEMG+DTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQR 202

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 299



 Score = 31.6 bits (70), Expect(2) = e-141
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 1034 KKGGSYTQAAGSDSDQ 1081
            +KGGSYTQAAGSDS Q
Sbjct: 334  EKGGSYTQAAGSDSAQ 349


>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
          Length = 401

 Score =  450 bits (1157), Expect = e-127
 Identities = 212/277 (76%), Positives = 237/277 (85%)
 Frame = +3

Query: 99  PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
           PHSL YFYTAVSRP R D RF +VGYVDDTQFVRFDS+APN + EPR  W++ EGPE  D
Sbjct: 23  PHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCD 82

Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
           R T+I K+T+Q ++VSLN LRGYYNQSEAGSHT Q + GCY+  DG LLRGY Q AYDGA
Sbjct: 83  RNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGA 142

Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           DY+ LNEDLRSWTA  MAAQI++RKWE   VAE  R+YL+  CV+SL RYL  GK+TLQR
Sbjct: 143 DYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQR 202

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
           ++PPKTHVTRHPSSD  VTLRCWALGFYPKEISLTWQ+EGQDQSQD+E+VETRPSGDGTF
Sbjct: 203 SDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTF 262

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           +KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 RKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 299


>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
          Length = 355

 Score =  412 bits (1058), Expect = e-115
 Identities = 193/276 (69%), Positives = 225/276 (81%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HS+ YF+T VSRP  G+ R+  VGYVDDTQFVRFDS+A N +MEPRA W++QEG EYWD 
Sbjct: 22  HSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDE 81

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ETQ  K+  Q +R +L  LRGYYNQSE GSHT Q  YGC  G  G  L  + Q AYDG D
Sbjct: 82  ETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDGED 141

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ LNEDL SWTAADMAA++++RKW+ +   E  +SYL+G CVE LRRYLE G++ LQRA
Sbjct: 142 YITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRA 201

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
           +PPK +VT HPSSD  VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGTFQ
Sbjct: 202 DPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQ 261

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
           KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++
Sbjct: 262 KWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR 297


>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
          Length = 369

 Score =  386 bits (991), Expect = e-107
 Identities = 183/274 (66%), Positives = 215/274 (78%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL Y +  VSRP  G   +  VG++DDTQFVRF SDA N ++EPRA W++QEG EYWDR
Sbjct: 52  HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 111

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           +T I+KE ++  R +L  + G +N S++ SH+   + GC +G +G +LRGY Q +YDG D
Sbjct: 112 QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDD 171

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
           Y+ LNEDLRSWTA    AQI +RKWEA  VAE  R+YL+  CVE LR+YLE GKD LQRA
Sbjct: 172 YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 231

Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
            PPKTHVTRHP  D  VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 232 VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 291

Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
           KWAALVVP GEEQSYTC VQHEGLQEPLTLRW+P
Sbjct: 292 KWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEP 325


>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
           alpha chain-like [Sus scrofa].
          Length = 374

 Score =  256 bits (653), Expect = 2e-68
 Identities = 127/274 (46%), Positives = 174/274 (63%), Gaps = 1/274 (0%)
 Frame = +3

Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
           HSL Y Y A+S P  G  +F  VGYVDD  F+R+DS     K EP+A W+     +YW++
Sbjct: 42  HSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYWEK 99

Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
           ET+  +  A+  +V +  + GYYNQS +G H+ QRM+GC +  DG    G+ Q  +DG D
Sbjct: 100 ETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDGHST-GFWQFGFDGQD 157

Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANV-AEGERSYLQGRCVESLRRYLEMGKDTLQR 638
           +L+L+ +  SW +A+  A  +KR WE     AE +++Y++G C+ SLR+YLE+G     R
Sbjct: 158 HLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSR 217

Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
            EPP   VT+H + D G TLRCWALGFYP++ISL+W    ++ +   E VETRPSGDGT+
Sbjct: 218 REPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDGTY 277

Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
           Q W A  VP GEE  YTCHVQH  L   LT+ W+
Sbjct: 278 QTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWE 311


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,122,788
Number of extensions: 585889
Number of successful extensions: 3235
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3181
Number of HSP's successfully gapped: 41
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000770
         (1083 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         553   e-155
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22   147   1e-32

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  553 bits (279), Expect = e-155
 Identities = 279/279 (100%)
 Strand = Plus / Minus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055



 Score =  537 bits (271), Expect = e-150
 Identities = 277/279 (99%)
 Strand = Plus / Minus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908



 Score =  529 bits (267), Expect = e-147
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570



 Score =  529 bits (267), Expect = e-147
 Identities = 276/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600



 Score =  521 bits (263), Expect = e-145
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219



 Score =  513 bits (259), Expect = e-143
 Identities = 275/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996



 Score =  513 bits (259), Expect = e-143
 Identities = 274/279 (98%)
 Strand = Plus / Minus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123



 Score =  450 bits (227), Expect = e-124
 Identities = 266/279 (95%)
 Strand = Plus / Plus

                                                                            
Query: 640      cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
                |||| |||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121

                                                                            
Query: 700      ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181

                                                                            
Query: 760      aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
                ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241

                                                                            
Query: 820      agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301

                                                       
Query: 880      agcacgagggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340



 Score =  438 bits (221), Expect = e-120
 Identities = 263/277 (94%)
 Strand = Plus / Minus

                                                                            
Query: 366      gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
                |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672

                                                                            
Query: 426      cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
                ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612

                                                                            
Query: 486      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
                ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552

                                                                            
Query: 546      aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
                 ||||||||||| |   |||||||||||||||||||  |||||||||||||||||||| |
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492

                                                     
Query: 606      tacctggagatggggaaggacacgctgcagcgcgcag 642
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455



 Score =  414 bits (209), Expect = e-113
 Identities = 260/277 (93%)
 Strand = Plus / Minus

                                                                            
Query: 366      gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
                |||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158

                                                                            
Query: 426      cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
                | |||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098

                                                                            
Query: 486      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038

                                                                            
Query: 546      aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
                 ||| |||||||     |||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978

                                                     
Query: 606      tacctggagatggggaaggacacgctgcagcgcgcag 642
                |||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941



 Score =  394 bits (199), Expect = e-107
 Identities = 253/271 (93%)
 Strand = Plus / Minus

                                                                            
Query: 648      ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 707
                |||||| || |||||||| |||||||||||||||||      |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541

                                                                            
Query: 708      gccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggaccag 767
                |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481

                                                                            
Query: 768      agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 827
                ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421

                                                                            
Query: 828      gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 887
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361

                                               
Query: 888      ggcctgcaggagcccctcaccctgagatggg 918
                |||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330



 Score =  377 bits (190), Expect = e-102
 Identities = 253/274 (92%)
 Strand = Plus / Plus

                                                                            
Query: 645      cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 704
                ||||||||||| ||||||||||||||||||  || ||||      |||||  | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630

                                                                            
Query: 705      tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 764
                |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690

                                                                            
Query: 765      cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 824
                |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750

                                                                            
Query: 825      tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 884
                ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810

                                                  
Query: 885      gagggcctgcaggagcccctcaccctgagatggg 918
                ||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844



 Score =  343 bits (173), Expect = 1e-91
 Identities = 251/277 (90%)
 Strand = Plus / Minus

                                                                            
Query: 366      gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
                |||||||||||||||||||  | ||| |||||| || |||||||||||||||||||||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030

                                                                            
Query: 426      cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
                | | |||||   ||||||||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970

                                                                            
Query: 486      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
                |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910

                                                                            
Query: 546      aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
                |||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850

                                                     
Query: 606      tacctggagatggggaaggacacgctgcagcgcgcag 642
                ||| |||||||||  |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813



 Score =  327 bits (165), Expect = 7e-87
 Identities = 249/277 (89%)
 Strand = Plus / Minus

                                                                            
Query: 366      gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
                ||||||||||||||||||||  |||  |||||| || ||||||||||| |||||||||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102

                                                                            
Query: 426      cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
                ||| ||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042

                                                                            
Query: 486      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
                |||||||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982

                                                                            
Query: 546      aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
                ||||||||||||   |||||||||||||||||||||  ||||||||||| ||| |  | |
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922

                                                     
Query: 606      tacctggagatggggaaggacacgctgcagcgcgcag 642
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885



 Score =  325 bits (164), Expect = 3e-86
 Identities = 245/272 (90%)
 Strand = Plus / Minus

                                                                            
Query: 96       ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168

                                                                            
Query: 156      cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
                |||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108

                                                                            
Query: 216      ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
                || ||| |   ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048

                                                                            
Query: 276      gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
                |||  |||||| | || |  || ||| | |||||||| | ||||||||| |||||| | |
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988

                                                
Query: 336      ctgcgcggctactacaaccagagcgaggccgg 367
                ||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956



 Score =  319 bits (161), Expect = 2e-84
 Identities = 248/277 (89%)
 Strand = Plus / Minus

                                                                            
Query: 366      gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
                ||||||||||||||||||||  |||  |||||| || ||||||||||| |||||||||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231

                                                                            
Query: 426      cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
                ||| ||||||  | ||||| ||||||||||||||||||  ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171

                                                                            
Query: 486      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
                ||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111

                                                                            
Query: 546      aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
                ||||||||||||   |||||||||||||||||||||  ||||||||||| |||||  | |
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051

                                                     
Query: 606      tacctggagatggggaaggacacgctgcagcgcgcag 642
                ||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014



 Score =  317 bits (160), Expect = 7e-84
 Identities = 244/272 (89%)
 Strand = Plus / Minus

                                                                            
Query: 96       ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069

                                                                            
Query: 156      cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
                |||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009

                                                                            
Query: 216      ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
                || ||| |   ||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949

                                                                            
Query: 276      gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
                ||||||||||| | || |  || ||  | |||||||||| ||||||||| |||||| | |
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889

                                                
Query: 336      ctgcgcggctactacaaccagagcgaggccgg 367
                ||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857



 Score =  301 bits (152), Expect = 4e-79
 Identities = 242/272 (88%)
 Strand = Plus / Minus

                                                                            
Query: 96       ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653

                                                                            
Query: 156      cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
                |||||| ||   |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593

                                                                            
Query: 216      ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
                || ||| |   ||||||||| |||| || |||||||||||||||||||| ||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533

                                                                            
Query: 276      gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
                |||  |||||| | ||    |||||| | ||||||||||||| ||||| ||||||||| |
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473

                                                
Query: 336      ctgcgcggctactacaaccagagcgaggccgg 367
                ||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441



 Score =  295 bits (149), Expect = 3e-77
 Identities = 245/277 (88%)
 Strand = Plus / Minus

                                                                            
Query: 366      gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
                |||||||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306

                                                                            
Query: 426      cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
                |||||||||  ||||   | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246

                                                                            
Query: 486      cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
                |||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186

                                                                            
Query: 546      aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
                 ||| |||||||  |  ||| ||||||||| |||||  |||||||| || |||||  | |
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126

                                                     
Query: 606      tacctggagatggggaaggacacgctgcagcgcgcag 642
                |||||||||||||||||  ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089



 Score =  283 bits (143), Expect = 1e-73
 Identities = 240/271 (88%), Gaps = 1/271 (0%)
 Strand = Plus / Minus

                                                                            
Query: 97       gtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactccc 156
                |||||||||||||||| |||||| ||||||||||||||||||||||||||||| |  |||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799

                                                                            
Query: 157      gcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 216
                | ||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644798 g-ttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740

                                                                            
Query: 217      caaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattggg 276
                | ||| |   ||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680

                                                                            
Query: 277      atcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaacc 336
                ||  |||||| | || |  || ||  | ||||||||||| |||||||| |||||||||||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620

                                               
Query: 337      tgcgcggctactacaaccagagcgaggccgg 367
                |||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589



 Score =  210 bits (106), Expect = 1e-51
 Identities = 229/270 (84%)
 Strand = Plus / Minus

                                                                            
Query: 96       ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
                ||||||||||||||||||||| ||| |||| | ||||||||||| | |||||||||  ||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722

                                                                            
Query: 156      cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
                |||||| ||   ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662

                                                                            
Query: 216      ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
                || ||    | || |||||||||||||  |  |||| |||||||||||||||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602

                                                                            
Query: 276      gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
                ||   |||||| | |||||||||||| | ||||||||||  | ||| ||  ||||||| |
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542

                                              
Query: 336      ctgcgcggctactacaaccagagcgaggcc 365
                ||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512



 Score =  202 bits (102), Expect = 3e-49
 Identities = 229/270 (84%), Gaps = 1/270 (0%)
 Strand = Plus / Minus

                                                                            
Query: 96       ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
                ||||||||||||||||||||| ||| |||| | ||||||||||| | |||||||||  ||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592

                                                                            
Query: 156      cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
                |||||| ||   ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532

                                                                            
Query: 216      ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
                || ||    | || |||||||||||||  |  |||| ||||||||||||||||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473

                                                                            
Query: 276      gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
                ||   |||||| | |||||||||||| | ||||||||||  ||||| ||  ||||||| |
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413

                                              
Query: 336      ctgcgcggctactacaaccagagcgaggcc 365
                ||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383



 Score =  190 bits (96), Expect = 1e-45
 Identities = 162/184 (88%)
 Strand = Plus / Minus

                                                                            
Query: 96       ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
                |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||  ||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490

                                                                            
Query: 156      cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
                || ||| ||   |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430

                                                                            
Query: 216      ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
                || ||| |   ||||||||||||||||| ||||||  |||||||||||| ||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370

                    
Query: 276      gatc 279
                ||||
Sbjct: 24707369 gatc 24707366



 Score =  172 bits (87), Expect = 3e-40
 Identities = 109/115 (94%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| ||||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctgg-aggaagacgcgctcaggt 24684824



 Score =  172 bits (87), Expect = 3e-40
 Identities = 109/115 (94%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                |||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctgg-aggaagaagcgctcaggt 24749338



 Score =  172 bits (87), Expect = 3e-40
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                            
Query: 12       cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751626 cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 24751567

                                           
Query: 72       ctggccctgaccgggacccaggcgggt 98
                |||||||||||||||||||||||||||
Sbjct: 24751566 ctggccctgaccgggacccaggcgggt 24751540



 Score =  167 bits (84), Expect = 2e-38
 Identities = 225/272 (82%)
 Strand = Plus / Plus

                                                                            
Query: 96       ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
                ||||||||||||||||| ||||||||||| ||||||||||| ||    ||  ||||  ||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508

                                                                            
Query: 156      cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
                ||||||| | | |||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568

                                                                            
Query: 216      ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
                || ||| | | |  |||||||||| | | |||| |  ||| |||||| ||||||||||| 
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628

                                                                            
Query: 276      gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
                |||||| | ||||  |||  |||||| ||| |||||| || || ||||||||||||   |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688

                                                
Query: 336      ctgcgcggctactacaaccagagcgaggccgg 367
                ||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720



 Score =  165 bits (83), Expect = 6e-38
 Identities = 86/87 (98%)
 Strand = Plus / Minus

                                                                            
Query: 12       cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24687112 cagactccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 24687053

                                           
Query: 72       ctggccctgaccgggacccaggcgggt 98
                |||||||||||||||||||||||||||
Sbjct: 24687052 ctggccctgaccgggacccaggcgggt 24687026



 Score =  165 bits (83), Expect = 6e-38
 Identities = 108/115 (93%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| |||||||| |||||||||||| |||||||||| || |||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctgg-aggaagaagcgctcaggt 24721892



 Score =  157 bits (79), Expect = 2e-35
 Identities = 107/115 (93%), Gaps = 1/115 (0%)
 Strand = Plus / Plus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                |||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| |||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctgg-aggaagaagcgctcaggt 24603860



 Score =  157 bits (79), Expect = 2e-35
 Identities = 107/115 (93%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                |||||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||  |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctgg-aggaagaagcgctcaggt 24642988



 Score =  157 bits (79), Expect = 2e-35
 Identities = 107/115 (93%), Gaps = 1/115 (0%)
 Strand = Plus / Plus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                |||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| |||||||||||||| ||||||||||||||||| || |||||| ||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctgg-aggaagaagtgctcaggt 27616571



 Score =  149 bits (75), Expect = 4e-33
 Identities = 106/115 (92%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                |||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| |||||||| ||||||||||||||||||||||| || |||||| ||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctgg-aggaagaagtgctcaggt 24705676



 Score =  147 bits (74), Expect = 1e-32
 Identities = 99/106 (93%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                            
Query: 927      cagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctggtccctgga 986
                ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||
Sbjct: 26675472 cagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtcgctgga 26675413

                                                              
Query: 987      gccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 26675412 gccatggtggctggagttgtgatctgg-aggaagaagcgctcaggt 26675368



 Score =  141 bits (71), Expect = 9e-31
 Identities = 105/115 (91%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                            
Query: 918      gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
                ||||||||||||||||| |||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819

                                                                       
Query: 978      gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
                ||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctgg-aggaagaagcgctcaggt 24656765



 Score =  133 bits (67), Expect = 2e-28
 Identities = 100/111 (90%)
 Strand = Plus / Plus

                                                                            
Query: 411      gacgggctcctcctccgcgggtaccatcaggacgcctacgacggcgccgattacctcgcc 470
                ||||||| ||||||||||||||||  ||||  |||||| |||||||| |||||| ||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997

                                                                   
Query: 471      ctgaacgaggacctgcgctcctggaccgcggcggacatggcggctcagatc 521
                ||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatc 27615048



 Score =  129 bits (65), Expect = 3e-27
 Identities = 158/189 (83%)
 Strand = Plus / Minus

                                                                            
Query: 102      cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgcttc 161
                |||||| |||| |||||| |||| | |||||||||||||| || ||||||  |||| | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407

                                                                            
Query: 162      ttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaat 221
                 |    |||||||| ||||||||||||||||||||||||||||||||||| || |  |||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347

                                                                            
Query: 222      gcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgggatcgg 281
                 | | ||||||||||||||||| |||| |  |||||||||||| |||||||||||||  |
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287

                         
Query: 282      gagacacag 290
                |||||||||
Sbjct: 27210286 gagacacag 27210278



 Score =  129 bits (65), Expect = 3e-27
 Identities = 158/189 (83%)
 Strand = Plus / Minus

                                                                            
Query: 102      cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgcttc 161
                |||||| |||| |||||| |||| | |||||||||||||| || ||||||  |||| | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933

                                                                            
Query: 162      ttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaat 221
                 |    |||||||| ||||||||||||||||||||||||||||||||||| || |  |||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873

                                                                            
Query: 222      gcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgggatcgg 281
                 | | ||||||||||||||||| |||| |  |||||||||||| |||||||||||||  |
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813

                         
Query: 282      gagacacag 290
                |||||||||
Sbjct: 27629812 gagacacag 27629804



 Score =  125 bits (63), Expect = 5e-26
 Identities = 150/179 (83%)
 Strand = Plus / Plus

                                                                            
Query: 101      ccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgctt 160
                ||||||||||||  || |||||||||||||||||||||||| |||| ||||  |||||| 
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356

                                                                            
Query: 161      cttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaa 220
                | |    |||||||||||||||||||||||  || || ||||||||||||||||||| ||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416

                                                                           
Query: 221      tgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgggatc 279
                | | ||| |||||| |||| ||  ||||||  ||||| ||||||| |||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggatc 24620475



 Score =  113 bits (57), Expect = 2e-22
 Identities = 72/77 (93%)
 Strand = Plus / Minus

                                                                            
Query: 12       cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
                ||||| ||| |||||||||||||||||||  |||||||||||||||||||||||||| ||
Sbjct: 24659060 cagactccgcggctgaggatcatggggccccgagccctcttcctgctgctgtcgggggcc 24659001

                                 
Query: 72       ctggccctgaccgggac 88
                |||||||||||||||||
Sbjct: 24659000 ctggccctgaccgggac 24658984



 Score =  111 bits (56), Expect = 8e-22
 Identities = 75/80 (93%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                            
Query: 4        gcttctctc-agaccccgaggctgaggatcatggggcctggagccctcttcctgctgctg 62
                ||||||||| |||| |||||||||||||||||||||||  ||||||||||| ||||||||
Sbjct: 24645270 gcttctctccagactccgaggctgaggatcatggggccccgagccctcttcttgctgctg 24645211

                                    
Query: 63       tcggggaccctggccctgac 82
                ||||||||||||||||||||
Sbjct: 24645210 tcggggaccctggccctgac 24645191



 Score =  101 bits (51), Expect = 8e-19
 Identities = 72/79 (91%)
 Strand = Plus / Minus

                                                                            
Query: 20       gaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggaccctggccct 79
                |||||| |||||||||||||||||||||||  ||||||||||||| ||| ||||||||||
Sbjct: 24707953 gaggctaaggatcatggggcctggagcccttgtcctgctgctgtccggggccctggccct 24707894

                                   
Query: 80       gaccgggacccaggcgggt 98
                ||||||||||  |||||||
Sbjct: 24707893 gaccgggacctgggcgggt 24707875



 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                            
Query: 12       cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
                ||||| ||| |||||||||||||||||||  ||| ||||||||||||||| |||||| ||
Sbjct: 24724186 cagactccgcggctgaggatcatggggccccgaggcctcttcctgctgctctcgggggcc 24724127

                                 
Query: 72       ctggccctgaccgggac 88
                |||||||||||||||||
Sbjct: 24724126 ctggccctgaccgggac 24724110



 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 88/103 (85%)
 Strand = Plus / Plus

                                                                            
Query: 178      tggacgacacgcagttcgtgcggttcgacagcgacgccccaaatgcaaagatggagccgc 237
                ||||||||||||||||||| ||||||  |||||| ||| | ||| ||| | ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343

                                                           
Query: 238      gggcgcagtggatacagcaggaggggccggagtattgggatcg 280
                |||||| ||||||  |||||||||||| ||| |||||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggatcg 27603386



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                            
Query: 442      acgcctacgacggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcgg 501
                |||||||||||||||  |||||| || |  |||||||||||||| | |||||||| || |
Sbjct: 27209855 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27209796

                                                     
Query: 502      cggacatggcggctcagatctccaagcgcaagtggga 538
                ||||||||||||||| | || |  |||||||||||||
Sbjct: 27209795 cggacatggcggctcgggtcacacagcgcaagtggga 27209759



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 91/109 (83%)
 Strand = Plus / Plus

                                                                            
Query: 392      cggctgctacttgggaccagacgggctcctcctccgcgggtaccatcaggacgcctacga 451
                ||||||| || ||||| | ||||||| | |||| || |||||| | |||  | |||||||
Sbjct: 27603744 cggctgcgacgtgggatccgacgggcgcatccttcgagggtacgagcagttctcctacga 27603803

                                                                 
Query: 452      cggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcg 500
                ||||| ||||||| ||| |||||| || |||||||||||||||||||||
Sbjct: 27603804 cggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                            
Query: 442      acgcctacgacggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcgg 501
                |||||||||||||||  |||||| || |  |||||||||||||| | |||||||| || |
Sbjct: 27629381 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27629322

                                                     
Query: 502      cggacatggcggctcagatctccaagcgcaagtggga 538
                ||||||||||||||| | || |  |||||||||||||
Sbjct: 27629321 cggacatggcggctcgggtcacacagcgcaagtggga 27629285



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 39/40 (97%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                        
Query: 1026     ctcaggtgaaaaaaggagggagctacactcaggctgcagg 1065
                |||||||||||| |||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaa-aggagggagctacactcaggctgcagg 24604307



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                               
Query: 1035     aaaaaggagggagctacactcaggctgcagg 1065
                |||||||||||||||||||||||||||||||
Sbjct: 24642555 aaaaaggagggagctacactcaggctgcagg 24642525



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                               
Query: 1035     aaaaaggagggagctacactcaggctgcagg 1065
                |||||||||||||||||||||||||||||||
Sbjct: 24684388 aaaaaggagggagctacactcaggctgcagg 24684358



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                               
Query: 1035     aaaaaggagggagctacactcaggctgcagg 1065
                |||||||||||||||||||||||||||||||
Sbjct: 24748887 aaaaaggagggagctacactcaggctgcagg 24748857



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                               
Query: 1035     aaaaaggagggagctacactcaggctgcagg 1065
                |||||||||||||||||||||||||||||||
Sbjct: 26674928 aaaaaggagggagctacactcaggctgcagg 26674898



 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 584      gtgtgtggagtcgctccgcagatacctggagatggggaaggacacgctgcagcgcgcag 642
                ||||||||||| ||||||||  ||||| |||| ||||||||||  ||||||||||||||
Sbjct: 27603936 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 57       ctgctgtcggggaccctggccctgaccgggacccaggcgggt 98
                |||||||||||| ||||||||||||||||||||  |||||||
Sbjct: 24627347 ctgctgtcgggggccctggccctgaccgggacctgggcgggt 24627306


>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
          Length = 107

 Score =  147 bits (74), Expect = 1e-32
 Identities = 98/106 (92%)
 Strand = Plus / Plus

                                                                       
Query: 96  ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||
Sbjct: 2   ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61

                                                         
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggt 201
           |||||| ||   ||||||||||||||||||||||||||||||||||
Sbjct: 62  cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 107


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,868,370
Number of extensions: 275
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 63
Length of query: 1083
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1062
Effective length of database: 2,808,413,156
Effective search space: 2982534771672
Effective search space used: 2982534771672
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)