Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000770
(1083 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru... 463 e-130
Alignment gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru... 455 e-128
Alignment gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru... 452 e-128
Alignment gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ... 451 e-127
Alignment gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]. 450 e-127
Alignment gi|NP_001108327.1| major histocompatibility complex, class I, A... 443 e-125
Alignment gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus]. 444 e-125
Alignment gi|NP_001035644.1| major histocompatibility complex, class I, A... 444 e-125
Alignment gi|NP_001099086.1| non-classical MHC class I antigen [Bos tauru... 443 e-124
Alignment gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp... 442 e-124
>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
Length = 363
Score = 463 bits (1191), Expect = e-130
Identities = 221/302 (73%), Positives = 244/302 (80%)
Frame = +3
Query: 24 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
+R+MGP HSL YFYTAVSRP G+ RF VGYVDDTQFVRF
Sbjct: 1 MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
DSDAPN +MEPRA+W++QEGPEYWDRET+ SK+TAQ +RV LN LRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120
Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
MYGCY+GPDG L RG+ Q YDG DYLALNEDLRSWTA + AQISKRK EAA VAE +
Sbjct: 121 LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180
Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
R+YL+GRCVE LRRYLE GKDTL RA+PPK HVTRHP S VTLRCWALGFYP+EISLT
Sbjct: 181 RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240
Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300
Query: 924 AQ 929
Q
Sbjct: 301 PQ 302
>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
Length = 361
Score = 455 bits (1170), Expect(2) = e-128
Identities = 214/276 (77%), Positives = 235/276 (85%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YFYT VSRP G+ RF VGYVDDTQFVRFDSDA + + EPR W++QEGPEYWDR
Sbjct: 27 HSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYWDR 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ K+ AQT+RV+LN L GYYNQSEAGSHTLQ MYGC + PDG LRGY QDAYDG D
Sbjct: 87 ETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDGRD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALN+DLRSWTAAD AAQI+KRKWEAA AE R+YL+GRCVE LRRYLE GKDTL RA
Sbjct: 147 YIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLLRA 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVTRHPSSD VTLRCWALGFYP+EISLTWQ G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
KWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P Q
Sbjct: 267 KWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEPPQ 302
Score = 23.9 bits (50), Expect(2) = e-128
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KG YTQAA SDS Q
Sbjct: 335 EKGRIYTQAASSDSAQ 350
>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
Length = 358
Score = 452 bits (1163), Expect(2) = e-128
Identities = 214/276 (77%), Positives = 235/276 (85%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF TAVSRP G+ RF VGYVDDTQF RFDSDAPN + EPR W++QEG EYWDR
Sbjct: 24 HSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYWDR 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
T+I K+TAQT+RV LN LRGYYNQSEAGSHTLQ M GC +GPDG LLRG+ Q YDG +
Sbjct: 84 NTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDGRN 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAAD AAQI+KRKWEAA AEGER+Y++GRCVE LRRYLE GKD L RA
Sbjct: 144 YIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALLRA 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S+ VTLRCWALGFYP+EISLTWQREG+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
KWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q
Sbjct: 264 KWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQ 299
Score = 24.3 bits (51), Expect(2) = e-128
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KG YTQAA SDS Q
Sbjct: 332 EKGRIYTQAASSDSTQ 347
>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
Length = 398
Score = 451 bits (1159), Expect(2) = e-127
Identities = 213/276 (77%), Positives = 235/276 (85%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YFYTAVSRP G+ RF IVGYVDDT+FVRFDSDAP+ +MEPRA+W++QEGPEYWD+
Sbjct: 52 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ +K+ AQT+R +LN+LRGYYNQSEAGSHTLQ MYGC +GPDG LLRGY Q YDG D
Sbjct: 112 ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAAD AAQISKRK EAA A R YL GRCVESLRRYLE GK+TL RA
Sbjct: 172 YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP+EI LTWQ G+DQ+QDMELVETRP GDG FQ
Sbjct: 232 DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P Q
Sbjct: 292 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ 327
Score = 23.9 bits (50), Expect(2) = e-127
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KG +YTQA+ SDS Q
Sbjct: 360 EKGRTYTQASSSDSAQ 375
>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
Length = 359
Score = 450 bits (1158), Expect(2) = e-127
Identities = 212/276 (76%), Positives = 238/276 (86%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YFYTAVSRP G+ RF IVGYVDDTQFVRFDSDA + ++EPRA+W++QEGPEYWD+
Sbjct: 24 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYWDQ 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ +K+ AQ +R+ LN LRGYYNQSEAGSHTLQ MYGC +GPDG LLRG+ Q Y+G D
Sbjct: 84 ETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAAD AAQISKRKWEAA+VAE +R+YL+G CVE L RYLE GKDTL RA
Sbjct: 144 YIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLLRA 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
KW ALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q
Sbjct: 264 KWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ 299
Score = 24.3 bits (51), Expect(2) = e-127
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 1010 LEERSAQVKKGGSYTQAAGSDSDQ 1081
+++RS + KGG+Y QA+ SDS Q
Sbjct: 327 MKKRSGE--KGGNYIQASRSDSAQ 348
>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 363
Score = 443 bits (1140), Expect(2) = e-125
Identities = 211/276 (76%), Positives = 235/276 (85%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YFYTAVSRP G+ RF VGYVDDTQFVRFDSDAP+ ++EP A+W++QEGPEYW +
Sbjct: 28 HSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQEGPEYWHQ 87
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQ +K+TAQ +RV LN LRGYYNQSEAGSHT+Q MYGC +GPDGLL RGY Q AYDG D
Sbjct: 88 ETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGLL-RGYDQFAYDGRD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAAD AAQ++K EAA A R YL+G+CVE LRRYL GKDTL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTGKDTLLRA 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPKTHV HP SD VTLRCWALGFYP+EISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P Q
Sbjct: 267 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ 302
Score = 24.3 bits (51), Expect(2) = e-125
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KG Y+QA+ SDSDQ
Sbjct: 337 EKGRIYSQASSSDSDQ 352
>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
Length = 361
Score = 444 bits (1141), Expect = e-125
Identities = 214/302 (70%), Positives = 235/302 (77%)
Frame = +3
Query: 24 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
+R+MGP HS+ YF TAVSRP G+ ++ VGYVDDTQFVRF
Sbjct: 1 MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60
Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
DSDAPN +MEPRA+W++QEGPEYWD ETQ +K Q +RV+LN LRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120
Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
M GC +GPDG L RG+ Q YDG DYLALNEDLRSWTAAD AQISKRK EAA AE
Sbjct: 121 WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180
Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
R Y++G CVE LRRYLE GKDTL RA+PPK HVT HP SD VTLRCWALGFYPKEISLT
Sbjct: 181 RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240
Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300
Query: 924 AQ 929
Q
Sbjct: 301 PQ 302
>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 362
Score = 444 bits (1141), Expect = e-125
Identities = 214/302 (70%), Positives = 240/302 (79%)
Frame = +3
Query: 24 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
+R++GP HSL YFYTAVSRP G+ RF VGYVDDTQFVRF
Sbjct: 1 MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
DSDAP+ ++EP A+W++QEGPEYW +ETQ +K+TAQ +RV LN LRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120
Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
MYGC +GPDGLL RGY Q AYDG DY+ALNEDLRSWTAAD AAQ++K EAA A
Sbjct: 121 EMYGCDVGPDGLL-RGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179
Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
R YL+G+CVE LRRYL GKDTL RA+PPKTHV HP SD VTLRCWALGFYP EISLT
Sbjct: 180 RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239
Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240 WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299
Query: 924 AQ 929
Q
Sbjct: 300 PQ 301
>ref|NP_001099086.1| non-classical MHC class I antigen [Bos taurus].
Length = 342
Score = 443 bits (1140), Expect = e-124
Identities = 206/274 (75%), Positives = 232/274 (84%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHS+ YF TAVSRP G+ RF VGYVDDTQFVRFDSD P+ +MEPRA+W++ EGPEYWD
Sbjct: 23 PHSMRYFLTAVSRPGLGEPRFITVGYVDDTQFVRFDSDRPDPRMEPRARWVEDEGPEYWD 82
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
+ET+I KE QT+R +LN L GYYNQSEAGSHT+Q M+GC +G DG LLRGY+Q AYDG
Sbjct: 83 QETRIQKENTQTFRANLNTLLGYYNQSEAGSHTIQWMHGCGVGSDGRLLRGYNQHAYDGK 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DYLALNEDLRSWTAAD AAQI+KRKWEA AE R+YL+G+CV+ LRR+LE GKDTL R
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWEATGAAERFRNYLEGKCVKLLRRHLENGKDTLLR 202
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
A+PP HVT HP S+ VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGTF
Sbjct: 203 ADPPMAHVTHHPISEREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTF 262
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
QKWAAL VP GEEQ YTC VQHEGLQEPLTLRWD
Sbjct: 263 QKWAALAVPSGEEQRYTCRVQHEGLQEPLTLRWD 296
>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6
precursor [Bos taurus].
Length = 360
Score = 442 bits (1136), Expect = e-124
Identities = 207/276 (75%), Positives = 232/276 (84%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HS+ YF TAVSRP G+ R+ VGYVDDTQFVRFDSDA N +MEPR +W++QEGPEYWDR
Sbjct: 24 HSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQEGPEYWDR 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
T+ +K AQ++RV LN LRGYYNQSEAGSHTLQ M GCY+GPDG LLRG+ Q YDG D
Sbjct: 84 NTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQYGYDGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
YLALNEDLRSWTAAD AQI+KRKWEA AE +R+YL+G CVE LRR++E GKDTL RA
Sbjct: 144 YLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENGKDTLLRA 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP SD VTLRCWALGFYP+EISLTWQ G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
KWAALVVP GEEQ YTC VQHEGLQEPLTL+W+P Q
Sbjct: 264 KWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQ 299
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,748,291
Number of extensions: 901602
Number of successful extensions: 5366
Number of sequences better than 1.0e-05: 70
Number of HSP's gapped: 5279
Number of HSP's successfully gapped: 80
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000770
(1083 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]. 453 e-127
Alignment gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris]. 436 e-122
Alignment gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris]. 411 e-115
Alignment gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]. 358 6e-99
Alignment gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris]. 358 6e-99
Alignment gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein... 199 3e-51
Alignment gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s... 133 3e-31
Alignment gi|NP_001124302.1| CD1b molecule [Canis lupus familiaris]. 69 1e-11
Alignment gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati... 69 1e-11
Alignment gi|XP_545727.2| PREDICTED: similar to T-cell surface glycoprote... 68 2e-11
>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
Length = 361
Score = 453 bits (1165), Expect = e-127
Identities = 211/275 (76%), Positives = 236/275 (85%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YFYT+VSRP RGD RF VGYVDDTQFVRFDSDA +MEPRA W++QEGPEYWDR
Sbjct: 27 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDR 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ KETAQ YRV L+ LRGYYNQSEAGSHT Q MYGC LGP G LLRGY QDAYDGAD
Sbjct: 87 ETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGAD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAAD AAQI++RKWEAA AE +R+YL+ CVE LRRYLEMGK+TL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRA 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 EPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS 301
>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
Length = 358
Score = 436 bits (1121), Expect = e-122
Identities = 205/275 (74%), Positives = 233/275 (84%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YFYT+VSRP RGD RF VGYVDDTQFVRFDSDA +MEPRA W++QEGPEYWD
Sbjct: 24 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYWDP 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
+T+ KETA+T+RV L+ LRGYYNQSEAGSHT Q M+GC LGP G LLRGY QDAYDGAD
Sbjct: 84 QTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDGAD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAAD AAQI++RK EAA A R+YL+ CVE LRRYLEMGK+TL RA
Sbjct: 144 YIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLLRA 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 204 EPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+
Sbjct: 264 KWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEPS 298
>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
Length = 361
Score = 411 bits (1057), Expect = e-115
Identities = 190/275 (69%), Positives = 229/275 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL +F+TAVSRP RGD + VGYVDDTQF+RF+SDA + K+EPRA+W++QEGPE+W+
Sbjct: 27 HSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEE 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
+T+I+K AQT R +L GYYNQSEAGSHT Q GC +GPDG LLRGY Q AYDGAD
Sbjct: 87 QTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGAD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
YLAL+EDLRSWTAAD AAQI++RKWEAA A+ R YLQG CV+SL +YLE GK+TLQ
Sbjct: 147 YLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLT 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK ++TRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 DPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS 301
>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
Length = 381
Score = 358 bits (918), Expect = 6e-99
Identities = 164/275 (59%), Positives = 207/275 (75%), Gaps = 1/275 (0%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL + T VSRP G+ R + V YVDDT F RF+S+ + EP +W++QEGPEYW+
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 282 ETQISKETAQTYRVSLNNL-RGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
T S+ Q R +LN + + Y NQS GSHT Q + GC +GPDG LRGY + AYDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY+ L+EDLRSW D AQI++RKW+AA VAE +++L+GRC+E LRR+LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+P
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEP 306
>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
Length = 381
Score = 358 bits (918), Expect = 6e-99
Identities = 164/275 (59%), Positives = 207/275 (75%), Gaps = 1/275 (0%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL + T VSRP G+ R + V YVDDT F RF+S+ + EP +W++QEGPEYW+
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 282 ETQISKETAQTYRVSLNNL-RGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
T S+ Q R +LN + + Y NQS GSHT Q + GC +GPDG LRGY + AYDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY+ L+EDLRSW D AQI++RKW+AA VAE +++L+GRC+E LRR+LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+P
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEP 306
>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
(Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
familiaris].
Length = 315
Score = 199 bits (507), Expect = 3e-51
Identities = 106/280 (37%), Positives = 155/280 (55%), Gaps = 3/280 (1%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
P+SLS+FYT +SRP G F Y++D F +DS+ K PR W Q EG E W+
Sbjct: 27 PYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSET--GKAIPRYPWSQMEGIEDWE 84
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
+E+++ K + V+L ++ YY E GSHT Q M+GC L + + + AYDG
Sbjct: 85 KESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRYAYDGR 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANV-AEGERSYLQGRCVESLRRYLEMGKDTLQ 635
+++ N+++ +W D AA +K+KWEA V + ++YL+ C L+RYLE GK L
Sbjct: 143 NFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYLD 202
Query: 636 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 815
R EPP +T H + + TL+CW GFYP+EI L W + D + PSG+ T
Sbjct: 203 RQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSGNNT 261
Query: 816 FQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPAQ 929
+Q W + P + SY+C V+H L +PLT+ WD Q
Sbjct: 262 YQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301
>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
(FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
transporter, alpha chain) [Canis familiaris].
Length = 354
Score = 133 bits (334), Expect = 3e-31
Identities = 85/271 (31%), Positives = 132/271 (48%), Gaps = 2/271 (0%)
Frame = +3
Query: 105 SLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWI-QQEGPEYWDR 281
SL Y TAVS P G F+ G++ Q++ +++ A+ EP W+ + + YW++
Sbjct: 28 SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVSWYWEK 85
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET + + +L L + G +TLQ + GC LGPD + + A +G D
Sbjct: 86 ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138
Query: 462 YLALNEDLRSWTAADMAAQ-ISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
++ + L +W + +SKR + A ER++L C + L +LE G+ L+
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
EPP + P S L C A FYP E+ L + R G + P+GDG+F
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTL 911
W++L V G+E Y C VQH GL +PLT+
Sbjct: 257 HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTV 287
>ref|NP_001124302.1| CD1b molecule [Canis lupus familiaris].
Length = 337
Score = 68.6 bits (166), Expect = 1e-11
Identities = 74/267 (27%), Positives = 111/267 (41%), Gaps = 18/267 (6%)
Frame = +3
Query: 171 GYVDDTQFVRFDSDAPNAK-MEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGY 347
G++ D Q +D+DA A ++P ++ + D E +E Q Y L G+
Sbjct: 52 GWLGDVQIHGWDADAGRAVFLKPWSKG------NFSDEEMVELEEIIQVY------LTGF 99
Query: 348 YNQSEAGSHTLQRMY--------GCYLGPDG---LLLRGYHQDAYDGADYLALNEDLRSW 494
+ + + Q Y GC L PD LRG A G D+L+L S
Sbjct: 100 ILEVQDHAPEFQMQYPFEIQGVAGCQLHPDSGTESFLRG----ALGGLDFLSLKN--HSC 153
Query: 495 TAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYL----EMGKDTLQRAEPPKTHV 662
A ++R E EG R + E+ R+L + GK L+R P+ +
Sbjct: 154 VPAPEGGSRAQRICELILQYEGIRDIAEKLLFETCPRFLLGLLDAGKAELRRPVRPEAWL 213
Query: 663 TRHPSSDLG-VTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALV 839
+ PS G + L C GFYPK + +TW R G+ + Q + P DGT+ A L
Sbjct: 214 SAGPSPGPGRLQLVCHVSGFYPKPVWVTWMR-GEQEQQGTRRGDVLPHADGTWYLRATLD 272
Query: 840 VPPGEEQSYTCHVQHEGL-QEPLTLRW 917
V E +C V+H L + + L W
Sbjct: 273 VAAQEAAGLSCRVKHSSLGGQDMVLHW 299
>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
beta chain precursor (MHC class II antigen DMB) [Canis
familiaris].
Length = 263
Score = 68.6 bits (166), Expect = 1e-11
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Frame = +3
Query: 636 RAEPPKTHVTRHP--SSDLGVTLRCWALGFYPKEISLTWQREGQD-QSQDMELVETRPSG 806
R PP V + ++ V L C+ GFYP +++++W++ GQ S L +P+G
Sbjct: 111 RTRPPTVQVAKSTPFNTKESVMLACYVWGFYPADVTISWRKNGQPVPSHSSALNMAQPNG 170
Query: 807 DGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
D T+Q + L P E +YTC V+H G EP+ W P
Sbjct: 171 DWTYQTVSHLATTPSYEDTYTCVVEHIGAPEPVCEDWTP 209
>ref|XP_545727.2| PREDICTED: similar to T-cell surface glycoprotein CD1e precursor
(CD1e antigen) (R2G1) [Canis familiaris].
Length = 300
Score = 67.8 bits (164), Expect = 2e-11
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
Frame = +3
Query: 378 LQRMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAAN--- 548
LQ GC L G + AY G+D+L+ + SW + A +++ E N
Sbjct: 109 LQMSAGCRLHT-GKASESFLNGAYQGSDFLSFQGN--SWYPSPGAGSRARKVCEMLNRYQ 165
Query: 549 -VAEGERSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 722
+ E +S + C + L LE GK L R P+ ++ PS G + L C GF+
Sbjct: 166 DIKEIVKSLIGYICPQFLAGILEAGKAELGRQVRPEAWLSADPSPGPGRLRLVCHVSGFH 225
Query: 723 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 899
PK + +TW R G+ + + + P DGT+ A L V E +C V+H L +
Sbjct: 226 PKPVRVTWMR-GEQEQRGTRRGDFLPHADGTWYLRATLDVAAREAAGLSCRVKHSSLGGQ 284
Query: 900 PLTLRWD 920
+ L W+
Sbjct: 285 DMVLHWE 291
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,233,642
Number of extensions: 930859
Number of successful extensions: 5286
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5210
Number of HSP's successfully gapped: 26
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000770
(1083 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 443 e-127
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 440 e-126
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 444 e-126
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 445 e-125
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 442 e-124
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 422 e-118
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 415 e-116
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 407 e-113
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 407 e-113
Alignment gi|NP_001091948.1| HLA class I histocompatibility antigen, alph... 248 7e-66
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 443 bits (1139), Expect(2) = e-127
Identities = 204/273 (74%), Positives = 232/273 (84%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HS+ YF+T+VSRP RG+ RF VGYVDDTQFVRFDSDA + KMEPRA WI+QEGPEYWD+
Sbjct: 27 HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQ 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ K +QT R +L LRGYYNQSE GSHT+Q MYGC +GPDG LRGY QDAYDG D
Sbjct: 87 ETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAADMAAQI+KRKWEA + AE R YL+GRCV+ LRRYLE GK+TLQR
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRT 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPKTH+T HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE 299
Score = 30.8 bits (68), Expect(2) = e-127
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 1019 RSAQVKKGGSYTQAAGSDSDQ 1081
R + +KGGSYTQAA SDS Q
Sbjct: 334 RKSSDRKGGSYTQAASSDSAQ 354
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 440 bits (1131), Expect(2) = e-126
Identities = 205/273 (75%), Positives = 232/273 (84%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HS+ YF+T+VSRP RG+ RF VGYVDDTQFVRFDSDA + +MEPRA WI+QEGPEYWD+
Sbjct: 27 HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQ 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ K +QT RV L LRGYYNQSEAGSHT+Q MYGC +G DG LRGY QDAYDG D
Sbjct: 87 ETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAADMAAQI+KRKWEAA+ AE R+YL G CVE LRRYLE GK+TLQR
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRT 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPKTH+T HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE 299
Score = 30.8 bits (68), Expect(2) = e-126
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 1019 RSAQVKKGGSYTQAAGSDSDQ 1081
R + +KGGSYTQAA SDS Q
Sbjct: 334 RKSSDRKGGSYTQAASSDSAQ 354
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 444 bits (1142), Expect(2) = e-126
Identities = 209/275 (76%), Positives = 233/275 (84%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HS+ YFYT+VSRP RG+ RF VGYVDDTQFVRFDSDA + + EPRA WI+QEGPEYWDR
Sbjct: 27 HSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDR 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
TQI K AQT R SL NLRGYYNQSEAGSHTLQ MYGC +GPDG LLRG+ Q AYDG D
Sbjct: 87 NTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDLRSWTAAD AAQI++RKWEAA AE R+YL+G CVE LRRYLE GKD L+RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERA 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPKTHVT HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GD TFQ
Sbjct: 207 DPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPS 301
Score = 26.6 bits (57), Expect(2) = e-126
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 1019 RSAQVKKGGSYTQAAGSDSDQ 1081
R + KGGSY+QAA SDS Q
Sbjct: 334 RKSSGGKGGSYSQAACSDSAQ 354
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 445 bits (1145), Expect = e-125
Identities = 214/301 (71%), Positives = 238/301 (79%)
Frame = +3
Query: 24 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
+R+M P HS+ YF TAVSRP RG+ RF VGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
DSDA + + EPRA W++QEGPEYWDRETQ K AQ RVSL NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
RMYGC LGPDG LLRGY Q AYDG DY+ALNEDLRSWTAAD AAQI++RK EAA AE
Sbjct: 121 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 924 A 926
+
Sbjct: 301 S 301
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 442 bits (1136), Expect = e-124
Identities = 213/301 (70%), Positives = 237/301 (78%)
Frame = +3
Query: 24 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
+R+M P HS+ YF TAVSRP RG+ RF VGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
DSDA + + EPRA W++QEGPEYWDRETQ K AQ RVSL NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
RM GC LGPDG LLRGY Q AYDG DY+ALNEDLRSWTAAD AAQI++RK EAA AE
Sbjct: 121 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
R+YL+G CVE LRRYLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 924 A 926
+
Sbjct: 301 S 301
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
[Homo sapiens].
Length = 338
Score = 422 bits (1086), Expect = e-118
Identities = 202/272 (74%), Positives = 224/272 (82%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HS+ YF AVSRP RG+ RF +GYVDDTQFVRFDSD+ +MEPRA W++QEGPEYW+
Sbjct: 27 HSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYWEE 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ +K AQT R++L LRGYYNQSEA SHTLQ M GC LG DG LLRGY Q AYDG D
Sbjct: 87 ETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDGKD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
YLALNEDLRSWTAAD AAQISKRK EAANVAE R+YL+G CVE L RYLE GK+ LQRA
Sbjct: 147 YLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRA 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPKTHVT HP D TLRCWALGFYP EI LTWQR+G+DQ+QD+ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor
[Homo sapiens].
Length = 358
Score = 415 bits (1066), Expect(2) = e-116
Identities = 194/275 (70%), Positives = 225/275 (81%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+T+VSRP RG+ RF VGYVDDTQFVRFD+DA + +M PRA W++QEG EYWDR
Sbjct: 24 HSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDR 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ +++TAQ +RV+L LRGYYNQSEAGSHTLQ M+GC LGPDG LRGY Q AYDG D
Sbjct: 84 ETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
YL LNEDLRSWTA D AAQIS++K A+ AE +R+YL+ CVE L +YLE GK+TL
Sbjct: 144 YLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHL 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
EPPKTHVT HP SD TLRCWALGFYP EI+LTWQ++G+ +QD ELVETRP+GDGTFQ
Sbjct: 204 EPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA 926
KWAA+VVP GEEQ YTCHVQHEGL EP+TLRW PA
Sbjct: 264 KWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPA 298
Score = 23.1 bits (48), Expect(2) = e-116
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 1037 KGGSYTQAAGSDSDQ 1081
KGGSY++A SDS Q
Sbjct: 337 KGGSYSKAEWSDSAQ 351
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 407 bits (1045), Expect = e-113
Identities = 191/273 (69%), Positives = 221/273 (80%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF TAVSRP RG+ R+ V YVDDTQF+RFDSDA +MEPR W++QEGP+YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
T +K AQT RV+L NL YNQSEAGSHTLQ M GC +GPDG LLRGYHQ AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y++LNEDLRSWTAAD AQI++R +EA AE R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWE 296
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 407 bits (1045), Expect = e-113
Identities = 191/273 (69%), Positives = 221/273 (80%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF TAVSRP RG+ R+ V YVDDTQF+RFDSDA +MEPR W++QEGP+YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
T +K AQT RV+L NL YNQSEAGSHTLQ M GC +GPDG LLRGYHQ AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y++LNEDLRSWTAAD AQI++R +EA AE R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWE 296
>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
precursor [Homo sapiens].
Length = 254
Score = 248 bits (633), Expect = 7e-66
Identities = 121/181 (66%), Positives = 141/181 (77%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF TAVSRP RG+ R+ V YVDDTQF+RFDSDA +MEPR W++QEGP+YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
T +K AQT RV+L NL YNQSEAGSHTLQ M GC +GPDG LLRGYHQ AYDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y++LNEDLRSWTAAD AQI++R +EA AE R+YL+G C+E LRRYLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 642 E 644
E
Sbjct: 204 E 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,381,882
Number of extensions: 900994
Number of successful extensions: 5058
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 4968
Number of HSP's successfully gapped: 79
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000770
(1083 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al... 412 e-115
Alignment gi|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 a... 411 e-115
Alignment gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp... 410 e-114
Alignment gi|NP_001185489.1| H-2 class I histocompatibility antigen, Q7 a... 410 e-114
Alignment gi|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alph... 410 e-114
Alignment gi|XP_003085233.1| PREDICTED: h-2 class I histocompatibility an... 410 e-114
Alignment gi|XP_003085234.1| PREDICTED: h-2 class I histocompatibility an... 410 e-114
Alignment gi|XP_003085228.1| PREDICTED: h-2 class I histocompatibility an... 410 e-114
Alignment gi|XP_003085229.1| PREDICTED: h-2 class I histocompatibility an... 410 e-114
Alignment gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus]. 409 e-114
>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
[Mus musculus].
Length = 357
Score = 412 bits (1058), Expect = e-115
Identities = 192/275 (69%), Positives = 226/275 (82%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHSL YF TAVSRP G+ RF IVGYVDDTQFVRFDSDA N +MEPRA+WI+QEGPEYW+
Sbjct: 22 PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
RET +++ + +RV+L L GYYNQS SHTLQ MYGC +GPDG LLRGY Q+AYDG
Sbjct: 82 RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY++LNEDLRSWTA D+A+QISK K EA + A +R+YLQG CVE L RYL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
++PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+P
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEP 296
>ref|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 alpha chain [Mus
musculus].
Length = 334
Score = 411 bits (1056), Expect = e-115
Identities = 188/272 (69%), Positives = 227/272 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQI+K Q++R SL + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYLE+GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLELGKETLLRT 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295
>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
[Mus musculus].
Length = 325
Score = 410 bits (1053), Expect = e-114
Identities = 189/274 (68%), Positives = 225/274 (82%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HS+ YF T+VSRP G+ RF IVGYVDDTQFVRFDSDA +MEPRA W++QEGPEYW+R
Sbjct: 27 HSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYWER 86
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQ +K Q++ VSL L GYYNQSE+GSHT+Q MYGC +G DG LRGY Q AYDG D
Sbjct: 87 ETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRD 146
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTAAD+AA I++RKWE A AE R+YL+ CVE L RYLE+GK+TL R
Sbjct: 147 YIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRT 206
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPKTHVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 266
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 267 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 300
>ref|NP_001185489.1| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 2
precursor [Mus musculus].
Length = 310
Score = 410 bits (1053), Expect = e-114
Identities = 187/272 (68%), Positives = 227/272 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQI+K Q++R SL + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295
>ref|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1
precursor [Mus musculus].
Length = 334
Score = 410 bits (1053), Expect = e-114
Identities = 187/272 (68%), Positives = 227/272 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQI+K Q++R SL + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295
>ref|XP_003085233.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 1 [Mus musculus].
Length = 334
Score = 410 bits (1053), Expect = e-114
Identities = 187/272 (68%), Positives = 227/272 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQI+K Q++R SL + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295
>ref|XP_003085234.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 2 [Mus musculus].
Length = 310
Score = 410 bits (1053), Expect = e-114
Identities = 187/272 (68%), Positives = 227/272 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQI+K Q++R SL + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295
>ref|XP_003085228.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 1 [Mus musculus].
Length = 330
Score = 410 bits (1053), Expect = e-114
Identities = 187/272 (68%), Positives = 227/272 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 20 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 79
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQI+K Q++R SL + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 80 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 139
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R
Sbjct: 140 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 199
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 200 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 259
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 260 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 291
>ref|XP_003085229.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 2 [Mus musculus].
Length = 310
Score = 410 bits (1053), Expect = e-114
Identities = 187/272 (68%), Positives = 227/272 (83%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEGPEYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQI+K Q++R SL + YYNQS+ GSHTLQ MYGC +G DG LLRGY Q AY+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ALNEDL++WTA DMAAQI++RKWE A +AE +++YL+G C++SLRRYL++GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 917
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRW 295
>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
Length = 368
Score = 409 bits (1051), Expect = e-114
Identities = 189/275 (68%), Positives = 225/275 (81%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHS+ YF TAVSRP G+ F VGYVDDTQFVRFD DA N +MEPRA W++QEGPEYW+
Sbjct: 27 PHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYWE 86
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
RETQI+K Q ++ SL NL YYNQS GSHT QRMYGC LG DG LLRGY Q AYDG+
Sbjct: 87 RETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDGS 146
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY+ALN+DL++WTAAD+AAQI++R+WE VAE R+YL+ C+E LRRYLE+GK+TL R
Sbjct: 147 DYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLLR 206
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTF
Sbjct: 207 TDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 266
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P
Sbjct: 267 QKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,531,725
Number of extensions: 737265
Number of successful extensions: 4058
Number of sequences better than 1.0e-05: 130
Number of HSP's gapped: 3978
Number of HSP's successfully gapped: 136
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000770
(1083 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a... 558 e-163
Alignment gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a... 523 e-152
Alignment gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa]. 511 e-149
Alignment gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa]. 514 e-148
Alignment gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa]. 496 e-143
Alignment gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa]. 489 e-141
Alignment gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa]. 450 e-127
Alignment gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa]. 412 e-115
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 386 e-107
Alignment gi|XP_003361021.1| PREDICTED: class I histocompatibility antige... 256 2e-68
>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 558 bits (1439), Expect(2) = e-163
Identities = 265/277 (95%), Positives = 269/277 (97%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWI+QEGPEYWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYWD 82
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
RETQISKETAQTYRV L LRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGY QDAYDGA
Sbjct: 83 RETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDGA 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DYLALNEDLRSWTAAD AAQI+KRKWEAA+ AEGERSYLQG CVESLR+YLEMGKDTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQR 202
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 299
Score = 34.7 bits (78), Expect(2) = e-163
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KGGSYTQAAGSDSDQ
Sbjct: 334 EKGGSYTQAAGSDSDQ 349
>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 523 bits (1346), Expect(2) = e-152
Identities = 248/277 (89%), Positives = 256/277 (92%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHSLSYFYTAVSRPDRGDSRF VGYVDDTQFVRFD+ APN +MEPR WIQQEG +YWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 82
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
ET+ K+ AQTY V LN LRGYYNQSEAGSHTLQ M+GCYLGPDGLLL GY QDAYDGA
Sbjct: 83 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY+ALNEDLRSWTAADMAAQISKRKWEAA+ AE RSYLQG CVESLRRYLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 202
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 299
Score = 34.7 bits (78), Expect(2) = e-152
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KGGSYTQAAGSDSDQ
Sbjct: 334 EKGGSYTQAAGSDSDQ 349
>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
Length = 361
Score = 511 bits (1316), Expect(2) = e-149
Identities = 244/277 (88%), Positives = 254/277 (91%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHSLSYFYTAVSRPD GDSRF VGYVDDTQFVRFDSDA N +MEPRA WI++EG +YWD
Sbjct: 23 PHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYWD 82
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
ET+ KETAQ RV L LRGYYNQSEAGSHTLQ M+GCYLGPDGLLLRGY QDAYDGA
Sbjct: 83 EETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDGA 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY+ALNEDLRSWTAAD AAQI+KRKWEAA+ AE RSYLQG CVESLR YLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQR 202
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
A+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 ADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 299
Score = 34.7 bits (78), Expect(2) = e-149
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KGGSYTQAAGSDSDQ
Sbjct: 334 EKGGSYTQAAGSDSDQ 349
>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
Length = 364
Score = 514 bits (1323), Expect(2) = e-148
Identities = 246/302 (81%), Positives = 260/302 (86%)
Frame = +3
Query: 24 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 203
+R+ GP PHSLSYFYTAVSRPDRGDSRF VGYVDDTQFVRF
Sbjct: 1 MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60
Query: 204 DSDAPNAKMEPRAQWIQQEGPEYWDRETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQ 383
DSDAPN +MEPRA WIQQEG +YWDRET+ +AQT RV+L LRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120
Query: 384 RMYGCYLGPDGLLLRGYHQDAYDGADYLALNEDLRSWTAADMAAQISKRKWEAANVAEGE 563
MYGC +GPDGLLLRGY QDAYDGADY+ALNEDLRSWTAAD AAQI+KRKWEAA+ AEGE
Sbjct: 121 VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180
Query: 564 RSYLQGRCVESLRRYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 743
RSYLQG CVE L++YLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181 RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240
Query: 744 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300
Query: 924 AQ 929
Q
Sbjct: 301 PQ 302
Score = 31.6 bits (70), Expect(2) = e-148
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KGGSYTQAAGSDS Q
Sbjct: 337 EKGGSYTQAAGSDSAQ 352
>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
Length = 361
Score = 496 bits (1277), Expect(2) = e-143
Identities = 235/277 (84%), Positives = 251/277 (90%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHSL YF TAVSRPDRG RF VGYVDDTQFVRFDSDAPN +MEPRA WI+QEG EYWD
Sbjct: 23 PHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYWD 82
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
ET+ + +AQT+RV+LNNLRGYYNQSEAGSHTLQ MYGC +GPD L LRGY QDAYDGA
Sbjct: 83 EETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDGA 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY+ALNEDLRSWTAAD AAQI+KRKWEAA+ AE RSYL+G CVE L++YL+MG +TLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQR 202
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 299
Score = 31.6 bits (70), Expect(2) = e-143
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KGGSYTQAAGSDS Q
Sbjct: 334 EKGGSYTQAAGSDSAQ 349
>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
Length = 361
Score = 489 bits (1258), Expect(2) = e-141
Identities = 232/277 (83%), Positives = 248/277 (89%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHSLSY +T+VSRP RG+ RF VG VDDT VRFDSDA + EPRA WI+QEGPEYWD
Sbjct: 23 PHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYWD 82
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
ET+ISK+ AQT R +LN LRGYYNQSEA SHT+Q ++GC +GPD LLLR Y QDAYDGA
Sbjct: 83 EETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDGA 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DYLALNEDLRSWTAAD AAQI+KRKWE ANVAE ERSYLQG CVE L++YLEMG+DTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQR 202
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 299
Score = 31.6 bits (70), Expect(2) = e-141
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2
Query: 1034 KKGGSYTQAAGSDSDQ 1081
+KGGSYTQAAGSDS Q
Sbjct: 334 EKGGSYTQAAGSDSAQ 349
>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
Length = 401
Score = 450 bits (1157), Expect = e-127
Identities = 212/277 (76%), Positives = 237/277 (85%)
Frame = +3
Query: 99 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWD 278
PHSL YFYTAVSRP R D RF +VGYVDDTQFVRFDS+APN + EPR W++ EGPE D
Sbjct: 23 PHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCD 82
Query: 279 RETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGA 458
R T+I K+T+Q ++VSLN LRGYYNQSEAGSHT Q + GCY+ DG LLRGY Q AYDGA
Sbjct: 83 RNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGA 142
Query: 459 DYLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQR 638
DY+ LNEDLRSWTA MAAQI++RKWE VAE R+YL+ CV+SL RYL GK+TLQR
Sbjct: 143 DYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQR 202
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
++PPKTHVTRHPSSD VTLRCWALGFYPKEISLTWQ+EGQDQSQD+E+VETRPSGDGTF
Sbjct: 203 SDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTF 262
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
+KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 RKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ 299
>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
Length = 355
Score = 412 bits (1058), Expect = e-115
Identities = 193/276 (69%), Positives = 225/276 (81%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HS+ YF+T VSRP G+ R+ VGYVDDTQFVRFDS+A N +MEPRA W++QEG EYWD
Sbjct: 22 HSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDE 81
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ETQ K+ Q +R +L LRGYYNQSE GSHT Q YGC G G L + Q AYDG D
Sbjct: 82 ETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDGED 141
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ LNEDL SWTAADMAA++++RKW+ + E +SYL+G CVE LRRYLE G++ LQRA
Sbjct: 142 YITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRA 201
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
+PPK +VT HPSSD VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGTFQ
Sbjct: 202 DPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQ 261
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ 929
KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++
Sbjct: 262 KWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR 297
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 386 bits (991), Expect = e-107
Identities = 183/274 (66%), Positives = 215/274 (78%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL Y + VSRP G + VG++DDTQFVRF SDA N ++EPRA W++QEG EYWDR
Sbjct: 52 HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 111
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
+T I+KE ++ R +L + G +N S++ SH+ + GC +G +G +LRGY Q +YDG D
Sbjct: 112 QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDD 171
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANVAEGERSYLQGRCVESLRRYLEMGKDTLQRA 641
Y+ LNEDLRSWTA AQI +RKWEA VAE R+YL+ CVE LR+YLE GKD LQRA
Sbjct: 172 YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 231
Query: 642 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 821
PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 232 VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 291
Query: 822 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 923
KWAALVVP GEEQSYTC VQHEGLQEPLTLRW+P
Sbjct: 292 KWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEP 325
>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
alpha chain-like [Sus scrofa].
Length = 374
Score = 256 bits (653), Expect = 2e-68
Identities = 127/274 (46%), Positives = 174/274 (63%), Gaps = 1/274 (0%)
Frame = +3
Query: 102 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGPEYWDR 281
HSL Y Y A+S P G +F VGYVDD F+R+DS K EP+A W+ +YW++
Sbjct: 42 HSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYWEK 99
Query: 282 ETQISKETAQTYRVSLNNLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYHQDAYDGAD 461
ET+ + A+ +V + + GYYNQS +G H+ QRM+GC + DG G+ Q +DG D
Sbjct: 100 ETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDGHST-GFWQFGFDGQD 157
Query: 462 YLALNEDLRSWTAADMAAQISKRKWEAANV-AEGERSYLQGRCVESLRRYLEMGKDTLQR 638
+L+L+ + SW +A+ A +KR WE AE +++Y++G C+ SLR+YLE+G R
Sbjct: 158 HLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSR 217
Query: 639 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 818
EPP VT+H + D G TLRCWALGFYP++ISL+W ++ + E VETRPSGDGT+
Sbjct: 218 REPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDGTY 277
Query: 819 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 920
Q W A VP GEE YTCHVQH L LT+ W+
Sbjct: 278 QTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWE 311
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,122,788
Number of extensions: 585889
Number of successful extensions: 3235
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3181
Number of HSP's successfully gapped: 41
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000770
(1083 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 553 e-155
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22 147 1e-32
>Sscrofa_Chr07
|| Length = 134764511
Score = 553 bits (279), Expect = e-155
Identities = 279/279 (100%)
Strand = Plus / Minus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055
Score = 537 bits (271), Expect = e-150
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600
Score = 521 bits (263), Expect = e-145
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219
Score = 513 bits (259), Expect = e-143
Identities = 275/279 (98%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996
Score = 513 bits (259), Expect = e-143
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123
Score = 450 bits (227), Expect = e-124
Identities = 266/279 (95%)
Strand = Plus / Plus
Query: 640 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 699
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121
Query: 700 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 759
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181
Query: 760 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 819
||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241
Query: 820 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301
Query: 880 agcacgagggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340
Score = 438 bits (221), Expect = e-120
Identities = 263/277 (94%)
Strand = Plus / Minus
Query: 366 gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672
Query: 426 cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612
Query: 486 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552
Query: 546 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492
Query: 606 tacctggagatggggaaggacacgctgcagcgcgcag 642
|||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455
Score = 414 bits (209), Expect = e-113
Identities = 260/277 (93%)
Strand = Plus / Minus
Query: 366 gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158
Query: 426 cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098
Query: 486 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038
Query: 546 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
||| ||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978
Query: 606 tacctggagatggggaaggacacgctgcagcgcgcag 642
|||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941
Score = 394 bits (199), Expect = e-107
Identities = 253/271 (93%)
Strand = Plus / Minus
Query: 648 ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 707
|||||| || |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541
Query: 708 gccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggaccag 767
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481
Query: 768 agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 827
||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421
Query: 828 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 887
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361
Query: 888 ggcctgcaggagcccctcaccctgagatggg 918
|||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330
Score = 377 bits (190), Expect = e-102
Identities = 253/274 (92%)
Strand = Plus / Plus
Query: 645 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 704
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630
Query: 705 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggccaggac 764
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690
Query: 765 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 824
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750
Query: 825 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 884
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810
Query: 885 gagggcctgcaggagcccctcaccctgagatggg 918
||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844
Score = 343 bits (173), Expect = 1e-91
Identities = 251/277 (90%)
Strand = Plus / Minus
Query: 366 gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
||||||||||||||||||| | ||| |||||| || |||||||||||||||||||||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030
Query: 426 cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
| | ||||| ||||||||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970
Query: 486 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910
Query: 546 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
|||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850
Query: 606 tacctggagatggggaaggacacgctgcagcgcgcag 642
||| ||||||||| |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813
Score = 327 bits (165), Expect = 7e-87
Identities = 249/277 (89%)
Strand = Plus / Minus
Query: 366 gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
|||||||||||||||||||| ||| |||||| || ||||||||||| |||||||||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102
Query: 426 cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
||| |||||| | |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042
Query: 486 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
|||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982
Query: 546 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
|||||||||||| ||||||||||||||||||||| ||||||||||| ||| | | |
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922
Query: 606 tacctggagatggggaaggacacgctgcagcgcgcag 642
||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885
Score = 325 bits (164), Expect = 3e-86
Identities = 245/272 (90%)
Strand = Plus / Minus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108
Query: 216 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
|| ||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048
Query: 276 gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
||| |||||| | || | || ||| | |||||||| | ||||||||| |||||| | |
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988
Query: 336 ctgcgcggctactacaaccagagcgaggccgg 367
||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956
Score = 319 bits (161), Expect = 2e-84
Identities = 248/277 (89%)
Strand = Plus / Minus
Query: 366 gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
|||||||||||||||||||| ||| |||||| || ||||||||||| |||||||||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231
Query: 426 cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
||| |||||| | ||||| |||||||||||||||||| ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171
Query: 486 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111
Query: 546 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
|||||||||||| ||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051
Query: 606 tacctggagatggggaaggacacgctgcagcgcgcag 642
||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014
Score = 317 bits (160), Expect = 7e-84
Identities = 244/272 (89%)
Strand = Plus / Minus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009
Query: 216 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
|| ||| | ||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949
Query: 276 gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
||||||||||| | || | || || | |||||||||| ||||||||| |||||| | |
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889
Query: 336 ctgcgcggctactacaaccagagcgaggccgg 367
||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857
Score = 301 bits (152), Expect = 4e-79
Identities = 242/272 (88%)
Strand = Plus / Minus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
|||||| || |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593
Query: 216 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
|| ||| | ||||||||| |||| || |||||||||||||||||||| ||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533
Query: 276 gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
||| |||||| | || |||||| | ||||||||||||| ||||| ||||||||| |
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473
Query: 336 ctgcgcggctactacaaccagagcgaggccgg 367
||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441
Score = 295 bits (149), Expect = 3e-77
Identities = 245/277 (88%)
Strand = Plus / Minus
Query: 366 gggtctcacaccctccagagaatgtacggctgctacttgggaccagacgggctcctcctc 425
|||||||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306
Query: 426 cgcgggtaccatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 485
||||||||| |||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246
Query: 486 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 545
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186
Query: 546 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtcgctccgcaga 605
||| ||||||| | ||| ||||||||| ||||| |||||||| || ||||| | |
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126
Query: 606 tacctggagatggggaaggacacgctgcagcgcgcag 642
||||||||||||||||| ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089
Score = 283 bits (143), Expect = 1e-73
Identities = 240/271 (88%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 97 gtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactccc 156
|||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799
Query: 157 gcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 216
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644798 g-ttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740
Query: 217 caaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattggg 276
| ||| | ||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680
Query: 277 atcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaacc 336
|| |||||| | || | || || | ||||||||||| |||||||| |||||||||||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620
Query: 337 tgcgcggctactacaaccagagcgaggccgg 367
|||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589
Score = 210 bits (106), Expect = 1e-51
Identities = 229/270 (84%)
Strand = Plus / Minus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
||||||||||||||||||||| ||| |||| | ||||||||||| | ||||||||| ||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
|||||| || ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662
Query: 216 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
|| || | || ||||||||||||| | |||| |||||||||||||||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602
Query: 276 gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
|| |||||| | |||||||||||| | |||||||||| | ||| || ||||||| |
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542
Query: 336 ctgcgcggctactacaaccagagcgaggcc 365
||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512
Score = 202 bits (102), Expect = 3e-49
Identities = 229/270 (84%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
||||||||||||||||||||| ||| |||| | ||||||||||| | ||||||||| ||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
|||||| || ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532
Query: 216 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
|| || | || ||||||||||||| | |||| ||||||||||||||||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473
Query: 276 gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
|| |||||| | |||||||||||| | |||||||||| ||||| || ||||||| |
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413
Query: 336 ctgcgcggctactacaaccagagcgaggcc 365
||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383
Score = 190 bits (96), Expect = 1e-45
Identities = 162/184 (88%)
Strand = Plus / Minus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
|| ||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430
Query: 216 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
|| ||| | ||||||||||||||||| |||||| |||||||||||| ||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370
Query: 276 gatc 279
||||
Sbjct: 24707369 gatc 24707366
Score = 172 bits (87), Expect = 3e-40
Identities = 109/115 (94%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| ||||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctgg-aggaagacgcgctcaggt 24684824
Score = 172 bits (87), Expect = 3e-40
Identities = 109/115 (94%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
|||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctgg-aggaagaagcgctcaggt 24749338
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 12 cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751626 cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 24751567
Query: 72 ctggccctgaccgggacccaggcgggt 98
|||||||||||||||||||||||||||
Sbjct: 24751566 ctggccctgaccgggacccaggcgggt 24751540
Score = 167 bits (84), Expect = 2e-38
Identities = 225/272 (82%)
Strand = Plus / Plus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
||||||||||||||||| ||||||||||| ||||||||||| || || |||| ||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 215
||||||| | | |||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568
Query: 216 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgg 275
|| ||| | | | |||||||||| | | |||| | ||| |||||| |||||||||||
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628
Query: 276 gatcgggagacacagatcagcaaggaaaccgcacagacttaccgagtgagcctgaacaac 335
|||||| | |||| ||| |||||| ||| |||||| || || |||||||||||| |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688
Query: 336 ctgcgcggctactacaaccagagcgaggccgg 367
||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720
Score = 165 bits (83), Expect = 6e-38
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 12 cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24687112 cagactccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 24687053
Query: 72 ctggccctgaccgggacccaggcgggt 98
|||||||||||||||||||||||||||
Sbjct: 24687052 ctggccctgaccgggacccaggcgggt 24687026
Score = 165 bits (83), Expect = 6e-38
Identities = 108/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| |||||||| |||||||||||| |||||||||| || |||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctgg-aggaagaagcgctcaggt 24721892
Score = 157 bits (79), Expect = 2e-35
Identities = 107/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
|||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| |||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctgg-aggaagaagcgctcaggt 24603860
Score = 157 bits (79), Expect = 2e-35
Identities = 107/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
|||||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
|| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctgg-aggaagaagcgctcaggt 24642988
Score = 157 bits (79), Expect = 2e-35
Identities = 107/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
|||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| |||||||||||||| ||||||||||||||||| || |||||| ||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctgg-aggaagaagtgctcaggt 27616571
Score = 149 bits (75), Expect = 4e-33
Identities = 106/115 (92%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
|||||||||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| |||||||| ||||||||||||||||||||||| || |||||| ||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctgg-aggaagaagtgctcaggt 24705676
Score = 147 bits (74), Expect = 1e-32
Identities = 99/106 (93%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 927 cagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctggtccctgga 986
||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||
Sbjct: 26675472 cagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtcgctgga 26675413
Query: 987 gccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 26675412 gccatggtggctggagttgtgatctgg-aggaagaagcgctcaggt 26675368
Score = 141 bits (71), Expect = 9e-31
Identities = 105/115 (91%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 918 gaccctgctcagccccccgtccccatcgtgggcatcattgttgtcctggttctggtcctg 977
||||||||||||||||| |||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819
Query: 978 gtccctggagccgtggtggctggagttgtgatctggaagaaagaagcgctcaggt 1032
||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctgg-aggaagaagcgctcaggt 24656765
Score = 133 bits (67), Expect = 2e-28
Identities = 100/111 (90%)
Strand = Plus / Plus
Query: 411 gacgggctcctcctccgcgggtaccatcaggacgcctacgacggcgccgattacctcgcc 470
||||||| |||||||||||||||| |||| |||||| |||||||| |||||| ||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997
Query: 471 ctgaacgaggacctgcgctcctggaccgcggcggacatggcggctcagatc 521
||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatc 27615048
Score = 129 bits (65), Expect = 3e-27
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 102 cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgcttc 161
|||||| |||| |||||| |||| | |||||||||||||| || |||||| |||| | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407
Query: 162 ttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaat 221
| |||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347
Query: 222 gcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgggatcgg 281
| | ||||||||||||||||| |||| | |||||||||||| ||||||||||||| |
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287
Query: 282 gagacacag 290
|||||||||
Sbjct: 27210286 gagacacag 27210278
Score = 129 bits (65), Expect = 3e-27
Identities = 158/189 (83%)
Strand = Plus / Minus
Query: 102 cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgcttc 161
|||||| |||| |||||| |||| | |||||||||||||| || |||||| |||| | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933
Query: 162 ttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaat 221
| |||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873
Query: 222 gcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgggatcgg 281
| | ||||||||||||||||| |||| | |||||||||||| ||||||||||||| |
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813
Query: 282 gagacacag 290
|||||||||
Sbjct: 27629812 gagacacag 27629804
Score = 125 bits (63), Expect = 5e-26
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 101 ccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgctt 160
|||||||||||| || |||||||||||||||||||||||| |||| |||| ||||||
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356
Query: 161 cttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaa 220
| | ||||||||||||||||||||||| || || ||||||||||||||||||| ||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416
Query: 221 tgcaaagatggagccgcgggcgcagtggatacagcaggaggggccggagtattgggatc 279
| | ||| |||||| |||| || |||||| ||||| ||||||| |||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggatc 24620475
Score = 113 bits (57), Expect = 2e-22
Identities = 72/77 (93%)
Strand = Plus / Minus
Query: 12 cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 24659060 cagactccgcggctgaggatcatggggccccgagccctcttcctgctgctgtcgggggcc 24659001
Query: 72 ctggccctgaccgggac 88
|||||||||||||||||
Sbjct: 24659000 ctggccctgaccgggac 24658984
Score = 111 bits (56), Expect = 8e-22
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 4 gcttctctc-agaccccgaggctgaggatcatggggcctggagccctcttcctgctgctg 62
||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 24645270 gcttctctccagactccgaggctgaggatcatggggccccgagccctcttcttgctgctg 24645211
Query: 63 tcggggaccctggccctgac 82
||||||||||||||||||||
Sbjct: 24645210 tcggggaccctggccctgac 24645191
Score = 101 bits (51), Expect = 8e-19
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 20 gaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggaccctggccct 79
|||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 24707953 gaggctaaggatcatggggcctggagcccttgtcctgctgctgtccggggccctggccct 24707894
Query: 80 gaccgggacccaggcgggt 98
|||||||||| |||||||
Sbjct: 24707893 gaccgggacctgggcgggt 24707875
Score = 97.6 bits (49), Expect = 1e-17
Identities = 70/77 (90%)
Strand = Plus / Minus
Query: 12 cagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggacc 71
||||| ||| ||||||||||||||||||| ||| ||||||||||||||| |||||| ||
Sbjct: 24724186 cagactccgcggctgaggatcatggggccccgaggcctcttcctgctgctctcgggggcc 24724127
Query: 72 ctggccctgaccgggac 88
|||||||||||||||||
Sbjct: 24724126 ctggccctgaccgggac 24724110
Score = 85.7 bits (43), Expect = 5e-14
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 178 tggacgacacgcagttcgtgcggttcgacagcgacgccccaaatgcaaagatggagccgc 237
||||||||||||||||||| |||||| |||||| ||| | ||| ||| | ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343
Query: 238 gggcgcagtggatacagcaggaggggccggagtattgggatcg 280
|||||| |||||| |||||||||||| ||| |||||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggatcg 27603386
Score = 73.8 bits (37), Expect = 2e-10
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 442 acgcctacgacggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcgg 501
||||||||||||||| |||||| || | |||||||||||||| | |||||||| || |
Sbjct: 27209855 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27209796
Query: 502 cggacatggcggctcagatctccaagcgcaagtggga 538
||||||||||||||| | || | |||||||||||||
Sbjct: 27209795 cggacatggcggctcgggtcacacagcgcaagtggga 27209759
Score = 73.8 bits (37), Expect = 2e-10
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 392 cggctgctacttgggaccagacgggctcctcctccgcgggtaccatcaggacgcctacga 451
||||||| || ||||| | ||||||| | |||| || |||||| | ||| | |||||||
Sbjct: 27603744 cggctgcgacgtgggatccgacgggcgcatccttcgagggtacgagcagttctcctacga 27603803
Query: 452 cggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcg 500
||||| ||||||| ||| |||||| || |||||||||||||||||||||
Sbjct: 27603804 cggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852
Score = 73.8 bits (37), Expect = 2e-10
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 442 acgcctacgacggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcgg 501
||||||||||||||| |||||| || | |||||||||||||| | |||||||| || |
Sbjct: 27629381 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27629322
Query: 502 cggacatggcggctcagatctccaagcgcaagtggga 538
||||||||||||||| | || | |||||||||||||
Sbjct: 27629321 cggacatggcggctcgggtcacacagcgcaagtggga 27629285
Score = 63.9 bits (32), Expect = 2e-07
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 1026 ctcaggtgaaaaaaggagggagctacactcaggctgcagg 1065
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaa-aggagggagctacactcaggctgcagg 24604307
Score = 61.9 bits (31), Expect = 7e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1035 aaaaaggagggagctacactcaggctgcagg 1065
|||||||||||||||||||||||||||||||
Sbjct: 24642555 aaaaaggagggagctacactcaggctgcagg 24642525
Score = 61.9 bits (31), Expect = 7e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1035 aaaaaggagggagctacactcaggctgcagg 1065
|||||||||||||||||||||||||||||||
Sbjct: 24684388 aaaaaggagggagctacactcaggctgcagg 24684358
Score = 61.9 bits (31), Expect = 7e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1035 aaaaaggagggagctacactcaggctgcagg 1065
|||||||||||||||||||||||||||||||
Sbjct: 24748887 aaaaaggagggagctacactcaggctgcagg 24748857
Score = 61.9 bits (31), Expect = 7e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1035 aaaaaggagggagctacactcaggctgcagg 1065
|||||||||||||||||||||||||||||||
Sbjct: 26674928 aaaaaggagggagctacactcaggctgcagg 26674898
Score = 61.9 bits (31), Expect = 7e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 584 gtgtgtggagtcgctccgcagatacctggagatggggaaggacacgctgcagcgcgcag 642
||||||||||| |||||||| ||||| |||| |||||||||| ||||||||||||||
Sbjct: 27603936 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 57 ctgctgtcggggaccctggccctgaccgggacccaggcgggt 98
|||||||||||| |||||||||||||||||||| |||||||
Sbjct: 24627347 ctgctgtcgggggccctggccctgaccgggacctgggcgggt 24627306
>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
Length = 107
Score = 147 bits (74), Expect = 1e-32
Identities = 98/106 (92%)
Strand = Plus / Plus
Query: 96 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 155
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 2 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61
Query: 156 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggt 201
|||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 62 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,868,370
Number of extensions: 275
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 63
Length of query: 1083
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1062
Effective length of database: 2,808,413,156
Effective search space: 2982534771672
Effective search space used: 2982534771672
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)