Animal-Genome cDNA 20110601C-000861


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000861
         (1736 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776523.2| cytosol aminopeptidase [Bos taurus].                 917   0.0  
Alignment   gi|NP_001029469.1| probable aminopeptidase NPEPL1 [Bos taurus].      138   2e-32

>ref|NP_776523.2| cytosol aminopeptidase [Bos taurus].
          Length = 519

 Score =  917 bits (2370), Expect = 0.0
 Identities = 453/502 (90%), Positives = 473/502 (94%)
 Frame = +2

Query: 158  SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 337
            SV+R W PGP AA+MTKGLVLGIYSKEKE+D PQFTSAGENF+KLVSGKLREILNISGPP
Sbjct: 18   SVKRLWAPGPAAADMTKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPP 77

Query: 338  LKAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEI 517
            LKAGKTRTFYGLHEDF S             D+QENWHEGKENIRAAVAAGCRQIQDLEI
Sbjct: 78   LKAGKTRTFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEI 137

Query: 518  PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 697
            PSVEVDPCGDAQAAAEGAVLGLYEYD+LKQK+KVVVSAKLHGS DQEAWQRGVLFASGQN
Sbjct: 138  PSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRGVLFASGQN 197

Query: 698  LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEE 877
            LAR LMETPANEMTPT+FAE++E+NLKSAS KTDV IRPKSWIEEQEMGSFLSVAKGSEE
Sbjct: 198  LARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEE 257

Query: 878  PPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIV 1057
            PPVFLEIHYKGSP+AS+PPLVFVGKGITFDSGGISIKA+ANMDLMRADMGGAATICS IV
Sbjct: 258  PPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIV 317

Query: 1058 SAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY 1237
            SAAKLDLPIN+VGLAPLCENMPSGKANKPGDVVRA+NGKTIQVDNTDAEGRLILADALCY
Sbjct: 318  SAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCY 377

Query: 1238 AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 1417
            AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH
Sbjct: 378  AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 437

Query: 1418 YTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQ 1597
            YT+Q++DCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPY  +
Sbjct: 438  YTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK 497

Query: 1598 GMAGRPTRTLIEFLLXVSXDSA 1663
            GMAGRPTRTLIEFL   S DSA
Sbjct: 498  GMAGRPTRTLIEFLFRFSQDSA 519


>ref|NP_001029469.1| probable aminopeptidase NPEPL1 [Bos taurus].
          Length = 523

 Score =  138 bits (347), Expect = 2e-32
 Identities = 95/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
 Frame = +2

Query: 689  GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
            G  LA  +++TP NEM    F E I+K  K       V IR +  ++ +  G    V K 
Sbjct: 177  GVRLAARIVDTPCNEMNTDTFLEEIKKVGKELGIVPTV-IRDEE-LKARGFGGIYGVGKA 234

Query: 869  SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
            +  PP    + +  +PD +   + +VGKGI +D+GG+S+K    M  M+ D GGAA +  
Sbjct: 235  AIHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLG 292

Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
               +A K      L  +  L EN     A +P D+    +GKT++++NTDAEGRL+LAD 
Sbjct: 293  AFRAAVKQGFKDTLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352

Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
            + YA       +I++ ATLTGA  IA G     V TNS+       +A  + GD V  + 
Sbjct: 353  VSYACKDLGADIILDVATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRQCGDLVHPLV 412

Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
                  F  +T  + D +    N++    ++ +  A  F+   +       W HLDIA
Sbjct: 413  YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,811,359
Number of extensions: 2076261
Number of successful extensions: 7760
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7740
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 470
Effective length of database: 14,107,870
Effective search space: 6630698900
Effective search space used: 6630698900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000861
         (1736 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536228.2| PREDICTED: similar to leucine aminopeptidase [C...   894   0.0  
Alignment   gi|XP_543071.2| PREDICTED: similar to aminopeptidase-like 1 [Ca...   125   2e-28

>ref|XP_536228.2| PREDICTED: similar to leucine aminopeptidase [Canis familiaris].
          Length = 519

 Score =  894 bits (2311), Expect = 0.0
 Identities = 438/501 (87%), Positives = 469/501 (93%)
 Frame = +2

Query: 161  VRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPPL 340
            V+R W  G  AA+MTKGLVLGIY+K+KEDD PQFTSAGENF+KLVSGKLREILNISGPPL
Sbjct: 19   VKRLWVRGLSAADMTKGLVLGIYTKDKEDDVPQFTSAGENFNKLVSGKLREILNISGPPL 78

Query: 341  KAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEIP 520
            KAGKTRTFYGLHEDF S             DDQENWHEGKENIR AVAAGCRQ+QDLE+ 
Sbjct: 79   KAGKTRTFYGLHEDFPSVVVVGLGKKAAGVDDQENWHEGKENIRVAVAAGCRQVQDLELS 138

Query: 521  SVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQNL 700
            SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKK VVSA+LHG GDQEAWQ+GVLFASGQNL
Sbjct: 139  SVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKPVVSAQLHGGGDQEAWQKGVLFASGQNL 198

Query: 701  ARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEP 880
            ARHLMETPANEMTPTRFA++IEKNL+SA+SKT+V+IRPKSWIEEQEMGSFLSVAKGS+EP
Sbjct: 199  ARHLMETPANEMTPTRFAKIIEKNLRSANSKTEVYIRPKSWIEEQEMGSFLSVAKGSDEP 258

Query: 881  PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIVS 1060
            PVFLEIHY+GSP+AS+ PLVFVGKGITFDSGGISIKA+ANMDLMRADMGGAATICS IVS
Sbjct: 259  PVFLEIHYRGSPNASEAPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVS 318

Query: 1061 AAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA 1240
            AAKL+LPIN+VGLAPLCENMPSGKANKPGDVV+AKNGKTIQVDNTDAEGRLILADALCYA
Sbjct: 319  AAKLNLPINIVGLAPLCENMPSGKANKPGDVVKAKNGKTIQVDNTDAEGRLILADALCYA 378

Query: 1241 HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY 1420
            HTFNPK+IINAATLTGAMD+ALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY
Sbjct: 379  HTFNPKIIINAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY 438

Query: 1421 TKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQG 1600
            T+Q+VDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPY  +G
Sbjct: 439  TRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKG 498

Query: 1601 MAGRPTRTLIEFLLXVSXDSA 1663
            M GRPTRTLIEFLL  S ++A
Sbjct: 499  MTGRPTRTLIEFLLQFSENNA 519


>ref|XP_543071.2| PREDICTED: similar to aminopeptidase-like 1 [Canis familiaris].
          Length = 397

 Score =  125 bits (313), Expect = 2e-28
 Identities = 76/208 (36%), Positives = 111/208 (53%), Gaps = 1/208 (0%)
 Frame = +2

Query: 689  GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
            G  LA  +++TP NEM    F E I+K  K     T   IR +  ++ +  G    V K 
Sbjct: 177  GVRLAARIVDTPCNEMNTDTFLEEIKKVGKDLGI-TPTIIRDEE-LKTRGFGGIYGVGKA 234

Query: 869  SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
            +  PP    + +  +P+ +   + +VGKGI +D+GG+SIK    M  M+ D GGAA +  
Sbjct: 235  ALHPPALAVLSH--TPEGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292

Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
               +A K     NL  +  L EN     A +P D+    +GKT++++NTDAEGRL+LAD 
Sbjct: 293  AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352

Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALG 1309
            + YA       +I++ ATLTGA  IA G
Sbjct: 353  VSYACKDLGADIILDMATLTGAQGIATG 380


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 73,989,333
Number of extensions: 2132381
Number of successful extensions: 7665
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7646
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 470
Effective length of database: 15,274,216
Effective search space: 7178881520
Effective search space used: 7178881520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000861
         (1736 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_056991.2| cytosol aminopeptidase [Homo sapiens].               897   0.0  
Alignment   gi|NP_001191802.1| probable aminopeptidase NPEPL1 isoform 3 [Ho...   139   8e-33
Alignment   gi|NP_001191801.1| probable aminopeptidase NPEPL1 isoform 2 [Ho...   139   8e-33
Alignment   gi|NP_078939.3| probable aminopeptidase NPEPL1 isoform 1 [Homo ...   139   8e-33

>ref|NP_056991.2| cytosol aminopeptidase [Homo sapiens].
          Length = 519

 Score =  897 bits (2319), Expect = 0.0
 Identities = 442/502 (88%), Positives = 468/502 (93%)
 Frame = +2

Query: 158  SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 337
            +VRRF       A+MTKGLVLGIYSKEKEDD PQFTSAGENFDKL++GKLRE LNISGPP
Sbjct: 18   AVRRFGSRSLSTADMTKGLVLGIYSKEKEDDVPQFTSAGENFDKLLAGKLRETLNISGPP 77

Query: 338  LKAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEI 517
            LKAGKTRTFYGLH+DF S             D+QENWHEGKENIRAAVAAGCRQIQDLE+
Sbjct: 78   LKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLEL 137

Query: 518  PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 697
             SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKK+ VSAKL+GSGDQEAWQ+GVLFASGQN
Sbjct: 138  SSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASGQN 197

Query: 698  LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEE 877
            LAR LMETPANEMTPTRFAE+IEKNLKSASSKT+VHIRPKSWIEEQ MGSFLSVAKGS+E
Sbjct: 198  LARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDE 257

Query: 878  PPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIV 1057
            PPVFLEIHYKGSP+A++PPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS IV
Sbjct: 258  PPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIV 317

Query: 1058 SAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY 1237
            SAAKL+LPIN++GLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY
Sbjct: 318  SAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY 377

Query: 1238 AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 1417
            AHTFNPKVI+NAATLTGAMD+ALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH
Sbjct: 378  AHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 437

Query: 1418 YTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQ 1597
            YT+Q+VDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPY  +
Sbjct: 438  YTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK 497

Query: 1598 GMAGRPTRTLIEFLLXVSXDSA 1663
            GM GRPTRTLIEFLL  S D+A
Sbjct: 498  GMTGRPTRTLIEFLLRFSQDNA 519


>ref|NP_001191802.1| probable aminopeptidase NPEPL1 isoform 3 [Homo sapiens].
          Length = 475

 Score =  139 bits (350), Expect = 8e-33
 Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
 Frame = +2

Query: 689  GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
            G  LA  +++TP NEM    F E I K  K       + IR +  ++ +  G    V K 
Sbjct: 129  GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 186

Query: 869  SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
            +  PP    + +  +PD +   + +VGKGI +D+GG+SIK    M  M+ D GGAA +  
Sbjct: 187  ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 244

Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
               +A K     NL  +  L EN     A +P D+    +GKT++++NTDAEGRL+LAD 
Sbjct: 245  AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 304

Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
            + YA       +I++ ATLTGA  IA G     V TNS+       +A  + GD V  + 
Sbjct: 305  VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 364

Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
                  F  +T  + D +    N++    ++ +  A  F+   +       W HLDIA
Sbjct: 365  YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 418


>ref|NP_001191801.1| probable aminopeptidase NPEPL1 isoform 2 [Homo sapiens].
          Length = 495

 Score =  139 bits (350), Expect = 8e-33
 Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
 Frame = +2

Query: 689  GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
            G  LA  +++TP NEM    F E I K  K       + IR +  ++ +  G    V K 
Sbjct: 149  GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 206

Query: 869  SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
            +  PP    + +  +PD +   + +VGKGI +D+GG+SIK    M  M+ D GGAA +  
Sbjct: 207  ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 264

Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
               +A K     NL  +  L EN     A +P D+    +GKT++++NTDAEGRL+LAD 
Sbjct: 265  AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 324

Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
            + YA       +I++ ATLTGA  IA G     V TNS+       +A  + GD V  + 
Sbjct: 325  VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 384

Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
                  F  +T  + D +    N++    ++ +  A  F+   +       W HLDIA
Sbjct: 385  YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 438


>ref|NP_078939.3| probable aminopeptidase NPEPL1 isoform 1 [Homo sapiens].
          Length = 523

 Score =  139 bits (350), Expect = 8e-33
 Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
 Frame = +2

Query: 689  GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
            G  LA  +++TP NEM    F E I K  K       + IR +  ++ +  G    V K 
Sbjct: 177  GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 234

Query: 869  SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
            +  PP    + +  +PD +   + +VGKGI +D+GG+SIK    M  M+ D GGAA +  
Sbjct: 235  ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292

Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
               +A K     NL  +  L EN     A +P D+    +GKT++++NTDAEGRL+LAD 
Sbjct: 293  AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352

Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
            + YA       +I++ ATLTGA  IA G     V TNS+       +A  + GD V  + 
Sbjct: 353  VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 412

Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
                  F  +T  + D +    N++    ++ +  A  F+   +       W HLDIA
Sbjct: 413  YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,317,266
Number of extensions: 2078963
Number of successful extensions: 7359
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7332
Number of HSP's successfully gapped: 4
Length of query: 578
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 470
Effective length of database: 14,737,052
Effective search space: 6926414440
Effective search space used: 6926414440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000861
         (1736 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_077754.3| cytosol aminopeptidase [Mus musculus].               890   0.0  
Alignment   gi|NP_998898.1| probable aminopeptidase NPEPL1 [Mus musculus].       137   3e-32

>ref|NP_077754.3| cytosol aminopeptidase [Mus musculus].
          Length = 519

 Score =  890 bits (2301), Expect = 0.0
 Identities = 434/501 (86%), Positives = 467/501 (93%)
 Frame = +2

Query: 161  VRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPPL 340
            VR  W  G   A+MTKGLVLGIY+K+K+DD PQFTSAGE+F+KLVSGKLRE+LNISGPPL
Sbjct: 19   VRGLWDRGLSTADMTKGLVLGIYAKDKDDDLPQFTSAGESFNKLVSGKLREMLNISGPPL 78

Query: 341  KAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEIP 520
            KAGKTRTFYGLH+DF S             DDQENWHEGKENIRAAVAAGCRQ+QDLE+P
Sbjct: 79   KAGKTRTFYGLHQDFPSVVVVGLGKRSAGVDDQENWHEGKENIRAAVAAGCRQVQDLELP 138

Query: 521  SVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQNL 700
            SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKKV VSAKLHGSGD EAW++GVLFASGQNL
Sbjct: 139  SVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKVAVSAKLHGSGDLEAWEKGVLFASGQNL 198

Query: 701  ARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEP 880
            ARHLME+PANEMTPTRFAE+IEKNLKSASSKT VHIRPKSWIEEQEMGSFLSVAKGSEEP
Sbjct: 199  ARHLMESPANEMTPTRFAEIIEKNLKSASSKTKVHIRPKSWIEEQEMGSFLSVAKGSEEP 258

Query: 881  PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIVS 1060
            PVFLEIHY GSP+A++ PLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS IVS
Sbjct: 259  PVFLEIHYMGSPNATEAPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIVS 318

Query: 1061 AAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA 1240
            AAKL+LPIN++GLAPLCENMPSGKANKPGDVVRA+NGKTIQVDNTDAEGRLILADALCYA
Sbjct: 319  AAKLNLPINIIGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA 378

Query: 1241 HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY 1420
            HTFNPKVIINAATLTGAMD+ALGSGATGVFTNSSWLWNKLFEAS+ETGDRVWRMPLFEHY
Sbjct: 379  HTFNPKVIINAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASVETGDRVWRMPLFEHY 438

Query: 1421 TKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQG 1600
            T+Q++DCQLADVNN+GKYRSAGACTAAAFL+EFVTH KWAHLDIAGVMTNKDE+PY  +G
Sbjct: 439  TRQVIDCQLADVNNLGKYRSAGACTAAAFLREFVTHTKWAHLDIAGVMTNKDEIPYLRKG 498

Query: 1601 MAGRPTRTLIEFLLXVSXDSA 1663
            M+GRPTRTLIEFLL  S DS+
Sbjct: 499  MSGRPTRTLIEFLLRFSKDSS 519


>ref|NP_998898.1| probable aminopeptidase NPEPL1 [Mus musculus].
          Length = 524

 Score =  137 bits (344), Expect = 3e-32
 Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
 Frame = +2

Query: 689  GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
            G  LA  +++TP NEM    F E I +  K     T   IR +  ++ +  G    V K 
Sbjct: 177  GVRLAARIVDTPCNEMNTDIFLEEIIQVGKELGI-TPTIIRDEQ-LKTKGFGGIYGVGKA 234

Query: 869  SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
            +  PP    + +  +PD +   + +VGKGI +D+GG+SIK    M  M+ D GGAA +  
Sbjct: 235  ALHPPALAILSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292

Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
               +A K     NL  +  L EN     A +P D+    +GKT++++NTDAEGRL+LAD 
Sbjct: 293  AFRAAIKQGFKDNLHAVFCLAENAVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352

Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
            + YA       +I++ ATLTGA  IA G     V TNS+       +A  + GD V  + 
Sbjct: 353  VSYACKDLGADIIVDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 412

Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
                  F  +T  + D +    N++    ++ +  A  F+   +       W HLDIA
Sbjct: 413  YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,029,124
Number of extensions: 1734534
Number of successful extensions: 6185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6165
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 471
Effective length of database: 12,403,707
Effective search space: 5842145997
Effective search space used: 5842145997
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000861
         (1736 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003356918.1| PREDICTED: cytosol aminopeptidase-like [Sus ...   473   e-133
Alignment   gi|XP_003128918.2| PREDICTED: condensin complex subunit 3 [Sus ...   322   5e-88
Alignment   gi|NP_001116620.1| probable aminopeptidase NPEPL1 [Sus scrofa].      139   4e-33
Alignment   gi|XP_003356917.1| PREDICTED: protein FAM184B-like [Sus scrofa].     114   1e-25

>ref|XP_003356918.1| PREDICTED: cytosol aminopeptidase-like [Sus scrofa].
          Length = 407

 Score =  473 bits (1218), Expect = e-133
 Identities = 265/390 (67%), Positives = 285/390 (73%), Gaps = 14/390 (3%)
 Frame = +2

Query: 158  SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 337
            SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP
Sbjct: 18   SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 77

Query: 338  LKAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEI 517
            LKAGKTRTFYGLHEDFSS             DDQENWHEGKENIRAAVAAGCRQIQDLEI
Sbjct: 78   LKAGKTRTFYGLHEDFSSVVVVGLGKKGAGVDDQENWHEGKENIRAAVAAGCRQIQDLEI 137

Query: 518  PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 697
            PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN
Sbjct: 138  PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 197

Query: 698  LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEE 877
            LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHI P    +E+   +  + +   +E
Sbjct: 198  LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHISPHDTRDERPSPTPPTPSTREKE 257

Query: 878  P----PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADM------- 1024
            P       +++  K SPD          K  T    G  +++ A  D  R+         
Sbjct: 258  PYPAAQEQVQVLVKASPDPERQEHEKTDKTQTKTEPGGWMESQAYGDEQRSTKQLEVRAQ 317

Query: 1025 ---GGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNT 1195
               G  A  C          LPI   G     ++  S      G +V+AK GK+++VD T
Sbjct: 318  EGEGQRAETCPM--------LPIRYGG-----QHSGSRSTTHTGSLVKAK-GKSLKVDTT 363

Query: 1196 DAEGRLILADALCYAHTFNPKVIINAATLT 1285
            DAEGRLILADALCYAHTFNPKVIINAATLT
Sbjct: 364  DAEGRLILADALCYAHTFNPKVIINAATLT 393


>ref|XP_003128918.2| PREDICTED: condensin complex subunit 3 [Sus scrofa].
          Length = 817

 Score =  322 bits (824), Expect = 5e-88
 Identities = 160/163 (98%), Positives = 162/163 (99%)
 Frame = +2

Query: 797  DVHIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG 976
            DV ++PKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG
Sbjct: 563  DVTLKPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG 622

Query: 977  ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV 1156
            ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV
Sbjct: 623  ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV 682

Query: 1157 RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT 1285
            RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT
Sbjct: 683  RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT 725


>ref|NP_001116620.1| probable aminopeptidase NPEPL1 [Sus scrofa].
          Length = 523

 Score =  139 bits (351), Expect = 4e-33
 Identities = 106/330 (32%), Positives = 160/330 (48%), Gaps = 13/330 (3%)
 Frame = +2

Query: 605  QKKKVVVSAKLHG--SGDQEAWQRGVLFAS--GQNLARHLMETPANEMTPTRFAEVIEKN 772
            +KK VVV   L G  +G  E      L ++  G  LA  +++TP NEM    F E I+K 
Sbjct: 145  EKKTVVVEFFLVGQDNGPVEVSTLQCLTSATEGVRLAARIVDTPCNEMNTDAFLEEIKKV 204

Query: 773  LKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGK 952
             +       V IR +  ++ +  G    V K +  PP    + +  +PD +   + +VGK
Sbjct: 205  GQDLGIAPTV-IRDEE-LKTRGFGGIYGVGKAAVHPPALAVLSH--TPDGATQTIAWVGK 260

Query: 953  GITFDSGGISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGK 1132
            GI +D+GG+S+K    M  M+ D GGAA +     +A +     NL  +  L EN    K
Sbjct: 261  GIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLGAFRAAVRQGFKDNLHAVFCLAENSVGPK 320

Query: 1133 ANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA-HTFNPKVIINAATLTGAMDIALG 1309
            A +P D+    +GKT++++NTDAEGRL+LAD + YA       +I++ ATLTGA  IA G
Sbjct: 321  ATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDIATLTGAQGIATG 380

Query: 1310 SGATGVFTNSSWLWNKLFEASIETGDRVWRMPL-----FEHYTKQIVDCQLADVNNIGKY 1474
                 V TNS+       +A  + GD V  +       F  +T  + D +    N++   
Sbjct: 381  KYHAAVLTNSAEWEAACVKAGRQCGDLVHPLVFCPELHFCEFTSAVADMK----NSVADR 436

Query: 1475 RSAGACTAAAFLKE---FVTHPKWAHLDIA 1555
             ++ +  A  F+     F     W HLDIA
Sbjct: 437  DNSPSSCAGLFIASHLGFDWPGVWVHLDIA 466


>ref|XP_003356917.1| PREDICTED: protein FAM184B-like [Sus scrofa].
          Length = 285

 Score =  114 bits (286), Expect = 1e-25
 Identities = 56/64 (87%), Positives = 56/64 (87%)
 Frame = -2

Query: 808 DVDVCFTAGTFEILLNNFSKSGWRHLIGRRLHQVACQVLPRSKEDAPLPGLLIPTSMELG 629
           DVDVCFTAGTFEILLNNFSKSGWRHLIG RLHQVACQVLPRSKED PLPGLLIPT    G
Sbjct: 11  DVDVCFTAGTFEILLNNFSKSGWRHLIGGRLHQVACQVLPRSKEDTPLPGLLIPT----G 66

Query: 628 RHDH 617
           R  H
Sbjct: 67  RRKH 70


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,879,214
Number of extensions: 1359083
Number of successful extensions: 5015
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4999
Number of HSP's successfully gapped: 4
Length of query: 578
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 474
Effective length of database: 8,754,644
Effective search space: 4149701256
Effective search space used: 4149701256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000861
         (1736 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         416   e-113

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  416 bits (210), Expect = e-113
 Identities = 252/264 (95%), Gaps = 2/264 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1474     cagatctgcaggagcatgtaccgctgcagcgttcctgaaagaatttgtgactcatcctaa 1533
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416927 cagatctgcaggagcatgtaccgctgcagcgttcctgaaagaatttgtgactcatcctaa 12416986

                                                                            
Query: 1534     gtgggcgcacttggacatagcgggtgtgatgaccaacaaagacgaggttccgtaccctgc 1593
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12416987 gtgggcgcacttggacatagcgggtgtgatgaccaacaaagacgaggttccgta-cctgc 12417045

                                                                            
Query: 1594     gc-aaggcatggcggggaggcccacaaggaccctcatcgagttcctgcttncggtcagtc 1652
                || |||||||||||||||||||||| ||||||||||||||||||||||||  | ||||||
Sbjct: 12417046 gcaaaggcatggcggggaggcccacgaggaccctcatcgagttcctgcttcggttcagtc 12417105

                                                                            
Query: 1653     angacagtgcttagatcagatggtctaaaattcccgtcatctgtctgaaatgggcagtag 1712
                | |||||||||||| ||||| ||||||||||||||  | |||||||||||||||||||||
Sbjct: 12417106 aggacagtgcttagttcagagggtctaaaattccctccttctgtctgaaatgggcagtag 12417165

                                        
Query: 1713     agctccagaatacttttgaatgat 1736
                ||||||||||||||||||||||||
Sbjct: 12417166 agctccagaatacttttgaatgat 12417189



 Score =  367 bits (185), Expect = 1e-98
 Identities = 185/185 (100%)
 Strand = Plus / Minus

                                                                            
Query: 25       aaagcggggctcctaggagcgcgcccgctctccatgcgccacgtgctcgttggagggcgg 84
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387845 aaagcggggctcctaggagcgcgcccgctctccatgcgccacgtgctcgttggagggcgg 12387786

                                                                            
Query: 85       tgcggggggccgagccgaaaagatgttcttgctgcctcttccggctgctgcgcgagtcgc 144
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387785 tgcggggggccgagccgaaaagatgttcttgctgcctcttccggctgctgcgcgagtcgc 12387726

                                                                            
Query: 145      cgtccgacagctgagcgtgaggcgtttctggggacccggtccagacgctgcaaacatgac 204
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387725 cgtccgacagctgagcgtgaggcgtttctggggacccggtccagacgctgcaaacatgac 12387666

                     
Query: 205      gaagg 209
                |||||
Sbjct: 12387665 gaagg 12387661



 Score =  319 bits (161), Expect = 3e-84
 Identities = 161/161 (100%)
 Strand = Plus / Minus

                                                                            
Query: 809      agacccaagtcttggattgaggaacaggaaatgggatcattcctgagtgtggccaaaggg 868
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409264 agacccaagtcttggattgaggaacaggaaatgggatcattcctgagtgtggccaaaggg 12409205

                                                                            
Query: 869      tccgaagagcctccagtcttcctggaaattcactacaaaggcagcccagacgcaagtgac 928
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409204 tccgaagagcctccagtcttcctggaaattcactacaaaggcagcccagacgcaagtgac 12409145

                                                         
Query: 929      ccacccctggtgtttgtcgggaagggaattacctttgacag 969
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409144 ccacccctggtgtttgtcgggaagggaattacctttgacag 12409104



 Score =  317 bits (160), Expect = 1e-83
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                            
Query: 482      gcagccgggtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgc 541
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381219 gcagccgggtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgc 12381160

                                                                            
Query: 542      ggagacgcccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctg 601
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381159 ggagacgcccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctg 12381100

                                                            
Query: 602      aagcagaaaaagaaggtggtcgtgtcggccaagctccatggaag 645
                |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12381099 aagcagaaaaagaaggtggtcgtgtcggccaagctccacggaag 12381056



 Score =  315 bits (159), Expect = 4e-83
 Identities = 165/167 (98%)
 Strand = Plus / Minus

                                                                            
Query: 644      agtggggatcaggaggcctggcagaggggcgtcctctttgcttctgggcagaacctggca 703
                ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12379875 agtggggatcaggaggcctggcagaggggtgtcctctttgcttctgggcagaacctggca 12379816

                                                                            
Query: 704      cgccacctgatggagacgcctgccaatgagatgacgccaaccagatttgctgaagttatt 763
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12379815 cgccacctgatggagacgcccgccaatgagatgacgccaaccagatttgctgaagttatt 12379756

                                                               
Query: 764      gagaagaatctcaaaagtgccagcagtaaaacagacgtccacatcag 810
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379755 gagaagaatctcaaaagtgccagcagtaaaacagacgtccacatcag 12379709



 Score =  250 bits (126), Expect = 2e-63
 Identities = 129/130 (99%)
 Strand = Plus / Minus

                                                                            
Query: 967      cagtggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatggg 1026
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12403729 cagtggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatggg 12403670

                                                                            
Query: 1027     cggagctgccaccatctgttccaccatcgtgtctgctgccaagctcgacctgcccatcaa 1086
                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12403669 cggagctgccactatctgttccaccatcgtgtctgctgccaagctcgacctgcccatcaa 12403610

                          
Query: 1087     cctcgtcggt 1096
                ||||||||||
Sbjct: 12403609 cctcgtcggt 12403600



 Score =  222 bits (112), Expect = 5e-55
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1365     aggccagcattgaaacgggagaccgggtctggaggatgcccctctttgaacactacacta 1424
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416357 aggccagcattgaaacgggagaccgggtctggaggatgcccctctttgaacactacacta 12416416

                                                                    
Query: 1425     aacagattgtagattgccagcttgctgatgttaataacattgggaaatacag 1476
                ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416417 aacagattgtagattgccagcttgctgatgttaataacattgggaaatacag 12416468



 Score =  218 bits (110), Expect = 8e-54
 Identities = 116/118 (98%)
 Strand = Plus / Minus

                                                                            
Query: 207      agggccttgttttaggaatctacagcaaagaaaaagaagatgatgcaccccagtttacaa 266
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384567 agggccttgttttaggaatctacagcaaagaaaaagaagatgatgcaccccagtttacaa 12384508

                                                                          
Query: 267      gtgcaggagagaattttgataaattggtgtctggaaagctgagagaaattttgaacat 324
                |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12384507 gtgcgggagagaattttgataaattggtgtctggaaagctgagagaaatcttgaacat 12384450



 Score =  214 bits (108), Expect = 1e-52
 Identities = 108/108 (100%)
 Strand = Plus / Minus

                                                                            
Query: 378      aggacttctccagcgtggtggtggttggcctcggcaaaaagggagccggagttgatgacc 437
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12382421 aggacttctccagcgtggtggtggttggcctcggcaaaaagggagccggagttgatgacc 12382362

                                                                
Query: 438      aggagaactggcacgaaggcaaagaaaacatcagagccgctgtcgcag 485
                ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12382361 aggagaactggcacgaaggcaaagaaaacatcagagccgctgtcgcag 12382314



 Score =  206 bits (104), Expect = 3e-50
 Identities = 107/108 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1181     caggtggacaacaccgacgccgagggcagactcatcctggccgacgcgctctgctacgcg 1240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12400889 caggtggacaacaccgacgccgagggcagactcatcctggccgacgcgctctgctacgcg 12400830

                                                                
Query: 1241     cacacttttaacccaaaggtcatcatcaatgccgccactctgacaggt 1288
                |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12400829 cacacttttaacccaaaggtcatcatcaatgccgccaccctgacaggt 12400782



 Score =  182 bits (92), Expect = 4e-43
 Identities = 92/92 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1094     ggtttggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctggggatgtc 1153
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12402197 ggtttggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctggggatgtc 12402138

                                                
Query: 1154     gttagagccaagaacgggaagaccatccaggt 1185
                ||||||||||||||||||||||||||||||||
Sbjct: 12402137 gttagagccaagaacgggaagaccatccaggt 12402106



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1284     caggtgccatggatatagctttgggatccggtgccactggggtctttaccaattcttcct 1343
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12414022 caggtgccatggatatagctttgggatccggtgccactggggtctttaccaattcttcct 12414081

                                        
Query: 1344     ggctgtggaacaagctcttcgagg 1367
                ||||||||||||||||||||||||
Sbjct: 12414082 ggctgtggaacaagctcttcgagg 12414105



 Score =  111 bits (56), Expect = 1e-21
 Identities = 56/56 (100%)
 Strand = Plus / Minus

                                                                        
Query: 325      atccggaccacccctgaaggcaggcaaaacccgaaccttttacggtctgcatgagg 380
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12383156 atccggaccacccctgaaggcaggcaaaacccgaaccttttacggtctgcatgagg 12383101


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,557,942
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 13
Length of query: 1736
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1714
Effective length of database: 2,808,408,574
Effective search space: 4813612295836
Effective search space used: 4813612295836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)