Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000904
(1945 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030265.1| integral membrane protein 2B [Bos taurus]. 519 e-147
Alignment gi|NP_001075007.1| integral membrane protein 2C [Bos taurus]. 224 3e-58
Alignment gi|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus]. 115 1e-25
Alignment gi|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus]. 115 1e-25
>ref|NP_001030265.1| integral membrane protein 2B [Bos taurus].
Length = 266
Score = 519 bits (1337), Expect = e-147
Identities = 249/265 (93%), Positives = 256/265 (96%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
MVKVTFNSALAQKEAKKDE KSGEEALIIPPD +AVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDESKSGEEALIIPPDAVAVDCKDPDEVVPVGQRRAWCWCMCFG 60
Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
LAFMLAGVILGGAYLYKYFA QPDDVYYCGIKYIKDDVILNEP A+APA+RYQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFAFQPDDVYYCGIKYIKDDVILNEPSADAPASRYQTIEENIK 120
Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
IFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP+NL
Sbjct: 121 IFEEDEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNL 180
Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQR+ET+KGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRRETIKGI 240
Query: 918 QKREASNCATIRHFENKFAVETLIC 992
QKR A C TIRHFEN+FAVETLIC
Sbjct: 241 QKRSADVCVTIRHFENRFAVETLIC 265
>ref|NP_001075007.1| integral membrane protein 2C [Bos taurus].
Length = 271
Score = 224 bits (570), Expect = 3e-58
Identities = 116/276 (42%), Positives = 167/276 (60%), Gaps = 11/276 (3%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDC--------KDPDEVVPVGQRRA 353
MVK++F A+A + K + S + P T A + + P + G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASASAPAPTPAAEILLTPAREERPPYQRYKKGGSVG 60
Query: 354 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 524
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQA 112
Query: 525 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 704
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 113 HTRMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 172
Query: 705 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 884
NT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC K+TY
Sbjct: 173 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTY 232
Query: 885 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
+L+R+ T + I KREA NC IRHFEN F VETLIC
Sbjct: 233 RLRRRATRRRINKREAKNCNAIRHFENTFVVETLIC 268
>ref|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 206
Score = 115 bits (288), Expect = 1e-25
Identities = 72/177 (40%), Positives = 85/177 (48%)
Frame = -3
Query: 638 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 459
M+++GRV + KLWDRHADE + +FL+DL+IF
Sbjct: 1 MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35
Query: 458 VDVIWLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDGVGGDD 279
VCS NDTC+HK Q+KAHAPTP SSLAN HFIWVL +H +GV +D
Sbjct: 36 -------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNGVRRND 82
Query: 278 ERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLGRA 108
ER GQSRVERHLHH RA G GC LL A
Sbjct: 83 ERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLAAA 134
>ref|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 206
Score = 115 bits (288), Expect = 1e-25
Identities = 72/177 (40%), Positives = 85/177 (48%)
Frame = -3
Query: 638 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 459
M+++GRV + KLWDRHADE + +FL+DL+IF
Sbjct: 1 MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35
Query: 458 VDVIWLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDGVGGDD 279
VCS NDTC+HK Q+KAHAPTP SSLAN HFIWVL +H +GV +D
Sbjct: 36 -------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNGVRRND 82
Query: 278 ERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLGRA 108
ER GQSRVERHLHH RA G GC LL A
Sbjct: 83 ERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLAAA 134
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,098,037
Number of extensions: 1605797
Number of successful extensions: 3413
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3410
Number of HSP's successfully gapped: 4
Length of query: 648
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 539
Effective length of database: 14,074,782
Effective search space: 7586307498
Effective search space used: 7586307498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000904
(1945 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534119.2| PREDICTED: similar to integral membrane protein... 455 e-128
Alignment gi|XP_543282.2| PREDICTED: similar to Integral membrane protein... 219 1e-56
Alignment gi|XP_861283.1| PREDICTED: similar to integral membrane protein... 198 1e-50
Alignment gi|XP_861254.1| PREDICTED: similar to integral membrane protein... 148 2e-35
>ref|XP_534119.2| PREDICTED: similar to integral membrane protein 2B [Canis
familiaris].
Length = 258
Score = 455 bits (1170), Expect = e-128
Identities = 215/226 (95%), Positives = 222/226 (98%)
Frame = +3
Query: 315 DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVI 494
DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDV+
Sbjct: 32 DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVL 91
Query: 495 LNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDL 674
LNEP A+APAARYQTIEENIKIFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDL
Sbjct: 92 LNEPSADAPAARYQTIEENIKIFEEDEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDL 151
Query: 675 NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYI 854
NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF+I
Sbjct: 152 NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFI 211
Query: 855 YRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
YRLCHDKETYKLQR+ET++GIQKRE SNC TIRHFENKFAVET+IC
Sbjct: 212 YRLCHDKETYKLQRRETIRGIQKREVSNCVTIRHFENKFAVETVIC 257
>ref|XP_543282.2| PREDICTED: similar to Integral membrane protein 2C (Transmembrane
protein BRI3) (Cerebral protein-14) isoform 2 [Canis
familiaris].
Length = 267
Score = 219 bits (557), Expect = 1e-56
Identities = 113/273 (41%), Positives = 167/273 (61%), Gaps = 8/273 (2%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW-----CW 362
MVK++F A+A + K + + A P I + + P ++ C+
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60
Query: 363 CMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAARY 533
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 -LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTR 111
Query: 534 QTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTS 713
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT+
Sbjct: 112 MELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTT 171
Query: 714 IVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQ 893
IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC K+TY+L+
Sbjct: 172 IVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLR 231
Query: 894 RKETVKGIQKREASNCATIRHFENKFAVETLIC 992
R+ T + I KR A +C IRHFEN F VETLIC
Sbjct: 232 RRATRRRINKRGAKSCNAIRHFENTFVVETLIC 264
>ref|XP_861283.1| PREDICTED: similar to integral membrane protein 2C isoform 3
isoform 4 [Canis familiaris].
Length = 220
Score = 198 bits (504), Expect = 1e-50
Identities = 94/185 (50%), Positives = 130/185 (70%)
Frame = +3
Query: 438 LQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADS 617
L D+ ++CG+ Y E ++ A +EE++KI+ E+ E I+VPVP+F
Sbjct: 41 LARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERINVPVPQFGGG 92
Query: 618 DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIH 797
DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I
Sbjct: 93 DPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQ 152
Query: 798 EHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAV 977
E MV+T+ + + + LG +IY LC K+TY+L+R+ T + I KR A +C IRHFEN F V
Sbjct: 153 EEMVVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATRRRINKRGAKSCNAIRHFENTFVV 212
Query: 978 ETLIC 992
ETLIC
Sbjct: 213 ETLIC 217
>ref|XP_861254.1| PREDICTED: similar to integral membrane protein 2C isoform 2
isoform 3 [Canis familiaris].
Length = 230
Score = 148 bits (373), Expect = 2e-35
Identities = 87/273 (31%), Positives = 136/273 (49%), Gaps = 8/273 (2%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW-----CW 362
MVK++F A+A + K + + A P I + + P ++ C+
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60
Query: 363 CMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAARY 533
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 -LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTR 111
Query: 534 QTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTS 713
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF ++
Sbjct: 112 MELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRR-------------------- 151
Query: 714 IVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQ 893
GTYLPQ+Y+I E MV+T+ + + + LG +IY LC K+TY+L+
Sbjct: 152 -----------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLR 194
Query: 894 RKETVKGIQKREASNCATIRHFENKFAVETLIC 992
R+ T + I KR A +C IRHFEN F VETLIC
Sbjct: 195 RRATRRRINKRGAKSCNAIRHFENTFVVETLIC 227
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,330,337
Number of extensions: 1552648
Number of successful extensions: 3344
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3341
Number of HSP's successfully gapped: 5
Length of query: 648
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 539
Effective length of database: 15,240,880
Effective search space: 8214834320
Effective search space used: 8214834320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000904
(1945 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068839.1| integral membrane protein 2B [Homo sapiens]. 526 e-149
Alignment gi|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sa... 218 2e-56
Alignment gi|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sa... 204 2e-52
Alignment gi|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo... 197 3e-50
Alignment gi|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo... 172 1e-42
Alignment gi|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo... 147 4e-35
>ref|NP_068839.1| integral membrane protein 2B [Homo sapiens].
Length = 266
Score = 526 bits (1355), Expect = e-149
Identities = 253/266 (95%), Positives = 260/266 (97%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD +AVDCKDPD+VVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDAVAVDCKDPDDVVPVGQRRAWCWCMCFG 60
Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEP A+APAA YQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPSADAPAALYQTIEENIK 120
Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
IFEE+ VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL
Sbjct: 121 IFEEEEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 180
Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF+IYRLCHDKETYKLQR+ET+KGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRETIKGI 240
Query: 918 QKREASNCATIRHFENKFAVETLICS 995
QKREASNC IRHFENKFAVETLICS
Sbjct: 241 QKREASNCFAIRHFENKFAVETLICS 266
>ref|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sapiens].
Length = 267
Score = 218 bits (554), Expect = 2e-56
Identities = 115/276 (41%), Positives = 165/276 (59%), Gaps = 11/276 (3%)
Frame = +3
Query: 198 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRA 353
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
Query: 354 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 524
+ G+ +L G++ Y+Y+YF L D+ + CG+ Y E ++
Sbjct: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108
Query: 525 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 704
+EE++KI+ ++ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 168
Query: 705 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 884
NT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY
Sbjct: 169 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 228
Query: 885 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
+L+R+ T + I KR A NC IRHFEN F VETLIC
Sbjct: 229 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 264
>ref|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sapiens].
Length = 263
Score = 204 bits (520), Expect = 2e-52
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 7/272 (2%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW----CWC 365
MVK+ FN+ A +K+E + EAL+ T+ E+ Q + C
Sbjct: 1 MVKIAFNTPTA---VQKEEARQDVEALL--SRTVRTQILTGKELRVATQEKEGSSGRCML 55
Query: 366 MCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAA---RYQ 536
GL+F+LAG+I+GGA +YKYF P Y G D +E PAN+ +
Sbjct: 56 TLLGLSFILAGLIVGGACIYKYF--MPKSTIYRGEMCFFD----SEDPANSLRGGEPNFL 109
Query: 537 TIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSI 716
+ E I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLNTSI
Sbjct: 110 PVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSI 169
Query: 717 VMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQR 896
VMPP+NL+EL + +G YLPQ+Y++ E +V + I ++ +LG +IY+LC+++++++L+R
Sbjct: 170 VMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRR 229
Query: 897 KETVKGIQKREASNCATIRHFENKFAVETLIC 992
++ + G KR C IRHF N+F VET IC
Sbjct: 230 RDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
>ref|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo sapiens].
Length = 220
Score = 197 bits (501), Expect = 3e-50
Identities = 93/185 (50%), Positives = 129/185 (69%)
Frame = +3
Query: 438 LQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADS 617
L D+ + CG+ Y E ++ +EE++KI+ ++ E I+VPVP+F
Sbjct: 41 LARDNFFRCGVLY--------EDSLSSQVRTQMELEEDVKIYLDENYERINVPVPQFGGG 92
Query: 618 DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIH 797
DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I
Sbjct: 93 DPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQ 152
Query: 798 EHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAV 977
E MV+T+ + + + LG +IY LC+ K+TY+L+R+ T + I KR A NC IRHFEN F V
Sbjct: 153 EEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVV 212
Query: 978 ETLIC 992
ETLIC
Sbjct: 213 ETLIC 217
>ref|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo sapiens].
Length = 219
Score = 172 bits (436), Expect = 1e-42
Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +3
Query: 498 NEPPANAPAA---RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYL 668
+E PAN+ + + E I E+D + I VPVP F+DSDPA I+HDF K +TAYL
Sbjct: 50 SEDPANSLRGGEPNFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYL 109
Query: 669 DLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF 848
DL L CY++PLNTSIVMPP+NL+EL + +G YLPQ+Y++ E +V + I ++ +LG
Sbjct: 110 DLLLGNCYLMPLNTSIVMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGI 169
Query: 849 YIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
+IY+LC+++++++L+R++ + G KR C IRHF N+F VET IC
Sbjct: 170 FIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 217
>ref|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo sapiens].
Length = 230
Score = 147 bits (370), Expect = 4e-35
Identities = 89/276 (32%), Positives = 134/276 (48%), Gaps = 11/276 (3%)
Frame = +3
Query: 198 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRA 353
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
Query: 354 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 524
+ G+ +L G++ Y+Y+YF L D+ + CG+ Y E ++
Sbjct: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108
Query: 525 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 704
+EE++KI+ ++ E I+VPVP+F DPA+I+HDF ++
Sbjct: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRR----------------- 151
Query: 705 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 884
GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY
Sbjct: 152 --------------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 191
Query: 885 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
+L+R+ T + I KR A NC IRHFEN F VETLIC
Sbjct: 192 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,155,939
Number of extensions: 1530293
Number of successful extensions: 3396
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3392
Number of HSP's successfully gapped: 7
Length of query: 648
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 539
Effective length of database: 14,704,088
Effective search space: 7925503432
Effective search space used: 7925503432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000904
(1945 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032436.1| integral membrane protein 2B [Mus musculus]. 521 e-148
Alignment gi|NP_071862.2| integral membrane protein 2C [Mus musculus]. 215 1e-55
Alignment gi|NP_032435.2| integral membrane protein 2A [Mus musculus]. 202 6e-52
>ref|NP_032436.1| integral membrane protein 2B [Mus musculus].
Length = 266
Score = 521 bits (1343), Expect = e-148
Identities = 248/266 (93%), Positives = 260/266 (97%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
MVKVTFNSALAQKEAKKDEPKS EEALI+PPD +AVDCKDP +VVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDEPKSSEEALIVPPDAVAVDCKDPGDVVPVGQRRAWCWCMCFG 60
Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
LAFMLAGVILGGAYLYKYFALQPDDVYYCG+KYIKDDVILNEP A+APAARYQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQPDDVYYCGLKYIKDDVILNEPSADAPAARYQTIEENIK 120
Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
IFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP+NL
Sbjct: 121 IFEEDAVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNL 180
Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
LELLINIKAGTYLPQSYLIHEHMVITDRIEN+D+LGF+IYRLCHDKETYKLQR+ET++GI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENVDNLGFFIYRLCHDKETYKLQRRETIRGI 240
Query: 918 QKREASNCATIRHFENKFAVETLICS 995
QKREASNC TIRHFENKFAVETLICS
Sbjct: 241 QKREASNCFTIRHFENKFAVETLICS 266
>ref|NP_071862.2| integral membrane protein 2C [Mus musculus].
Length = 269
Score = 215 bits (547), Expect = 1e-55
Identities = 115/274 (41%), Positives = 166/274 (60%), Gaps = 9/274 (3%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPK--SGEEALIIPPDTI----AVDCKDPDEVVPVGQRRAWC 359
MVK++F A+A +A K + SG + P I A + + P G
Sbjct: 1 MVKISFQPAVAGIKADKADKAAASGPASASAPAAEILLTPAREERPPRHRSRKGGSVGGV 60
Query: 360 WCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAAR 530
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQIRT 112
Query: 531 YQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNT 710
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT
Sbjct: 113 RLELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNT 172
Query: 711 SIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKL 890
+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY+L
Sbjct: 173 TIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVRDKEALGSFIYHLCNGKDTYRL 232
Query: 891 QRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
+R+ T + I KR NC IRHFEN F VETLIC
Sbjct: 233 RRRSTRRRINKRGGKNCNAIRHFENTFVVETLIC 266
>ref|NP_032435.2| integral membrane protein 2A [Mus musculus].
Length = 263
Score = 202 bits (515), Expect = 6e-52
Identities = 107/269 (39%), Positives = 163/269 (60%), Gaps = 4/269 (1%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRR----AWCWC 365
MVK+ FN+ A +K+E + EAL+ T+ E+ V Q + C
Sbjct: 1 MVKIAFNTPTA---VQKEEARQDVEALV--SRTVRAQILTGKELRVVPQEKDGSSGRCML 55
Query: 366 MCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIE 545
GL+F+LAG+I+GGA +YKYF + +Y+ + + + +N P P + +
Sbjct: 56 TLLGLSFILAGLIVGGACIYKYF-MPKSTIYHGEMCFFDSEDPVNSIPGGEPY--FLPVT 112
Query: 546 ENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 725
E I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLNTSIVM
Sbjct: 113 EEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMT 172
Query: 726 PRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKET 905
P+NL+EL + +G YLP +Y++ E +V + I ++ +LG +IY+LC+++++++L+R++
Sbjct: 173 PKNLVELFGKLASGKYLPHTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDL 232
Query: 906 VKGIQKREASNCATIRHFENKFAVETLIC 992
+ G KR C IRHF N+F VET IC
Sbjct: 233 LLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,643,309
Number of extensions: 1312043
Number of successful extensions: 2904
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2902
Number of HSP's successfully gapped: 3
Length of query: 648
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 540
Effective length of database: 12,373,671
Effective search space: 6681782340
Effective search space used: 6681782340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000904
(1945 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035834.1| integral membrane protein 2B [Sus scrofa]. 545 e-155
Alignment gi|NP_001116603.1| integral membrane protein 2C [Sus scrofa]. 221 1e-57
Alignment gi|NP_001026968.1| integral membrane protein 2A [Sus scrofa]. 198 1e-50
>ref|NP_001035834.1| integral membrane protein 2B [Sus scrofa].
Length = 266
Score = 545 bits (1403), Expect = e-155
Identities = 264/266 (99%), Positives = 264/266 (99%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
MVKVTFNSALAQKEAKK EPKSGEEALIIPPDT AVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKXEPKSGEEALIIPPDTXAVDCKDPDEVVPVGQRRAWCWCMCFG 60
Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 120
Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL
Sbjct: 121 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 180
Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 240
Query: 918 QKREASNCATIRHFENKFAVETLICS 995
QKREASNCATIRHFENKFAVETLICS
Sbjct: 241 QKREASNCATIRHFENKFAVETLICS 266
>ref|NP_001116603.1| integral membrane protein 2C [Sus scrofa].
Length = 269
Score = 221 bits (563), Expect = 1e-57
Identities = 115/274 (41%), Positives = 166/274 (60%), Gaps = 9/274 (3%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD------TIAVDCKDPDEVVPVGQRRAWC 359
MVK++F A+A + K + S + P T A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASAPAPAPAAEILLTPAREERPPHHRYKKGSSVGGV 60
Query: 360 WCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAAR 530
+ G+ +L G++ Y+Y+YF L D+ ++CG+ Y E ++ A
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQART 112
Query: 531 YQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNT 710
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LNT
Sbjct: 113 RMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNT 172
Query: 711 SIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKL 890
+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY+L
Sbjct: 173 TIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRL 232
Query: 891 QRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
+R+ T + I KR A NC IRHFEN F VETLIC
Sbjct: 233 RRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 266
>ref|NP_001026968.1| integral membrane protein 2A [Sus scrofa].
Length = 254
Score = 198 bits (503), Expect = 1e-50
Identities = 110/268 (41%), Positives = 159/268 (59%), Gaps = 3/268 (1%)
Frame = +3
Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
MVK+ FN+ A +K+E + EAL+ + + V K+ + C G
Sbjct: 1 MVKIAFNTPAA---VQKEEVQQDVEALLSHTE-LQVATKEKEGF------SGRCMLTLVG 50
Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAAR---YQTIEE 548
L+F+LAG+I+GGA +YKYF P Y G D PAN+ + + E
Sbjct: 51 LSFILAGLIVGGACIYKYF--MPKSTIYHGEMCFFDSA----DPANSLQGGEPYFLPVME 104
Query: 549 NIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP 728
I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLNTSIVMPP
Sbjct: 105 EADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMPP 164
Query: 729 RNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETV 908
+ LLEL + G YLP +Y++HE +V + I ++ +LG +IY+LC+++++++L+R++ +
Sbjct: 165 KYLLELFGKLARGKYLPHTYVVHEDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDLL 224
Query: 909 KGIQKREASNCATIRHFENKFAVETLIC 992
G KR C IRHF N+F VET IC
Sbjct: 225 LGFNKRAIDKCWKIRHFPNEFIVETKIC 252
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,107,993
Number of extensions: 1171614
Number of successful extensions: 2161
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2159
Number of HSP's successfully gapped: 3
Length of query: 648
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 543
Effective length of database: 8,729,747
Effective search space: 4740252621
Effective search space used: 4740252621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000904
(1945 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 1451 0.0
Sscrofa_Chr18 129 6e-27
>Sscrofa_Chr11
|| Length = 87690581
Score = 1451 bits (732), Expect = 0.0
Identities = 732/732 (100%)
Strand = Plus / Minus
Query: 911 aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803390 aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 19803331
Query: 971 tgccgtcgaaactttaatttgttcttgaacagtcaagaaaaacattatggagaaaaactt 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803330 tgccgtcgaaactttaatttgttcttgaacagtcaagaaaaacattatggagaaaaactt 19803271
Query: 1031 aatacacagcataataaccccaccctttgtattttgtgcagtgattattttttaaaatct 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803270 aatacacagcataataaccccaccctttgtattttgtgcagtgattattttttaaaatct 19803211
Query: 1091 tctttcatgtaagtagcaaacagggcttcactatcttttcatctcattgattcaattaaa 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803210 tctttcatgtaagtagcaaacagggcttcactatcttttcatctcattgattcaattaaa 19803151
Query: 1151 accattaccttttaaaaatcttttttcctttccaagtgtggtgtcttttatcttgaatta 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803150 accattaccttttaaaaatcttttttcctttccaagtgtggtgtcttttatcttgaatta 19803091
Query: 1211 gtagttgtatgaagtcataggtaatagtacacttcaccatagacctttaggtgttaagaa 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803090 gtagttgtatgaagtcataggtaatagtacacttcaccatagacctttaggtgttaagaa 19803031
Query: 1271 gaattcagatttccttaattcatttatccagatttttatgttttaattatgcattttcaa 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803030 gaattcagatttccttaattcatttatccagatttttatgttttaattatgcattttcaa 19802971
Query: 1331 gaggaggggttatctaataatcagatatatgcatacgtaaaaatggaccacagtgactta 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802970 gaggaggggttatctaataatcagatatatgcatacgtaaaaatggaccacagtgactta 19802911
Query: 1391 tttgtagttgttgccctgctacttggttagagcatttgaacacacattttgattttcctc 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802910 tttgtagttgttgccctgctacttggttagagcatttgaacacacattttgattttcctc 19802851
Query: 1451 taattaaaatgtgcagtattttcagtgtcatatttaactatttagagtataatttccacc 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802850 taattaaaatgtgcagtattttcagtgtcatatttaactatttagagtataatttccacc 19802791
Query: 1511 tcgatgttttaatatcctaggcatctgctgtaatgatattttagaaaatgtttggaattt 1570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802790 tcgatgttttaatatcctaggcatctgctgtaatgatattttagaaaatgtttggaattt 19802731
Query: 1571 aagaaataacctgtattaccaatttgtataatctatactgtgcaacagaatataaatatc 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802730 aagaaataacctgtattaccaatttgtataatctatactgtgcaacagaatataaatatc 19802671
Query: 1631 acaaagttgttt 1642
||||||||||||
Sbjct: 19802670 acaaagttgttt 19802659
Score = 410 bits (207), Expect = e-111
Identities = 207/207 (100%)
Strand = Plus / Minus
Query: 444 ccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatgag 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807475 ccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatgag 19807416
Query: 504 cctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatcttc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807415 cctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatcttc 19807356
Query: 564 gaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccct 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807355 gaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccct 19807296
Query: 624 gccaacattgtgcatgactttaacaag 650
|||||||||||||||||||||||||||
Sbjct: 19807295 gccaacattgtgcatgactttaacaag 19807269
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 760 aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805419 aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 19805360
Query: 820 gcattgaaaacatcgatcacctgggcttctatatttatcgactgtgccatgacaaggaaa 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805359 gcattgaaaacatcgatcacctgggcttctatatttatcgactgtgccatgacaaggaaa 19805300
Query: 880 cttacaaactgcagcgcaaagaaaccgttaaaggta 915
||||||||||||||||||||||||||||||||||||
Sbjct: 19805299 cttacaaactgcagcgcaaagaaaccgttaaaggta 19805264
Score = 285 bits (144), Expect = 4e-74
Identities = 147/148 (99%)
Strand = Plus / Minus
Query: 1 gtcgccgccctcgcctgggagctgcgaggcttcagtaaccctgcagcagtagccacctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874811 gtcgccgccctcgcctgggagctgcgaggcttcagtaaccctgcagcagtagccacctct 19874752
Query: 61 gtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcggagccctgccgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874751 gtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcggagccctgccgagg 19874692
Query: 121 aggctgcagccgtagccaggagcccgca 148
|||||||||||||||| |||||||||||
Sbjct: 19874691 aggctgcagccgtagctaggagcccgca 19874664
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 313 aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851903 aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 19851844
Query: 373 ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851843 ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 19851784
Query: 433 ttgcacttcaa 443
|||||||||||
Sbjct: 19851783 ttgcacttcaa 19851773
Score = 226 bits (114), Expect = 4e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 649 agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19806019 agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 19805960
Query: 709 cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805959 cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 19805906
Score = 192 bits (97), Expect = 5e-46
Identities = 111/118 (94%)
Strand = Plus / Minus
Query: 198 atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874614 atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 19874555
Query: 258 aagagcggagaggaggcgctcatcatnnnnnnngacaccatcgcggtggactgcaagg 315
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19874554 aagagcggagaggaggcgctcatcatcccccccgacaccatcgcggtggactgcaagg 19874497
>Sscrofa_Chr18
|| Length = 61220071
Score = 129 bits (65), Expect = 6e-27
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1092 ctttcatgtaagtagcaaacagggcttcactatcttttcatctcattgattcaattaaaa 1151
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 9458529 ctttcatgtaagtagcaaacagggcttcactatcttttcatcccattaattcaattaaaa 9458588
Query: 1152 ccattaccttttaaaaa 1168
||| |||||||||||||
Sbjct: 9458589 ccactaccttttaaaaa 9458605
Score = 119 bits (60), Expect = 6e-24
Identities = 87/94 (92%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 992 ttcttgaacagtcaagaaaaacattatggagaaaaac-ttaatacacagcataataaccc 1050
|||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||
Sbjct: 9458371 ttcttgaacagtcaagaaaagcattatggagaaaaactttaatacacagc---ataaccc 9458427
Query: 1051 caccctttgtattttgtgcagtgattatttttta 1084
||||||||||||||| ||||||||||| ||||||
Sbjct: 9458428 caccctttgtattttatgcagtgattacttttta 9458461
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,018,286
Number of extensions: 634
Number of successful extensions: 634
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 9
Length of query: 1945
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1923
Effective length of database: 2,808,408,574
Effective search space: 5400569687802
Effective search space used: 5400569687802
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)