Animal-Genome cDNA 20110601C-000904


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000904
         (1945 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030265.1| integral membrane protein 2B [Bos taurus].        519   e-147
Alignment   gi|NP_001075007.1| integral membrane protein 2C [Bos taurus].        224   3e-58
Alignment   gi|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus].     115   1e-25
Alignment   gi|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus].     115   1e-25

>ref|NP_001030265.1| integral membrane protein 2B [Bos taurus].
          Length = 266

 Score =  519 bits (1337), Expect = e-147
 Identities = 249/265 (93%), Positives = 256/265 (96%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
           MVKVTFNSALAQKEAKKDE KSGEEALIIPPD +AVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1   MVKVTFNSALAQKEAKKDESKSGEEALIIPPDAVAVDCKDPDEVVPVGQRRAWCWCMCFG 60

Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
           LAFMLAGVILGGAYLYKYFA QPDDVYYCGIKYIKDDVILNEP A+APA+RYQTIEENIK
Sbjct: 61  LAFMLAGVILGGAYLYKYFAFQPDDVYYCGIKYIKDDVILNEPSADAPASRYQTIEENIK 120

Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
           IFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP+NL
Sbjct: 121 IFEEDEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNL 180

Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
           LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQR+ET+KGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRRETIKGI 240

Query: 918 QKREASNCATIRHFENKFAVETLIC 992
           QKR A  C TIRHFEN+FAVETLIC
Sbjct: 241 QKRSADVCVTIRHFENRFAVETLIC 265


>ref|NP_001075007.1| integral membrane protein 2C [Bos taurus].
          Length = 271

 Score =  224 bits (570), Expect = 3e-58
 Identities = 116/276 (42%), Positives = 167/276 (60%), Gaps = 11/276 (3%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDC--------KDPDEVVPVGQRRA 353
           MVK++F  A+A  +  K +  S   +   P  T A +         + P +    G    
Sbjct: 1   MVKISFQPAVAGIKGDKADKASASASASAPAPTPAAEILLTPAREERPPYQRYKKGGSVG 60

Query: 354 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 524
               +  G+  +L G++    Y+Y+YF L     D+ ++CG+ Y        E   ++ A
Sbjct: 61  GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQA 112

Query: 525 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 704
                +EE++KI+ E+  E I+VPVP+F   DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 113 HTRMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 172

Query: 705 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 884
           NT+IV+PPRN  ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC  K+TY
Sbjct: 173 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTY 232

Query: 885 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           +L+R+ T + I KREA NC  IRHFEN F VETLIC
Sbjct: 233 RLRRRATRRRINKREAKNCNAIRHFENTFVVETLIC 268


>ref|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 206

 Score =  115 bits (288), Expect = 1e-25
 Identities = 72/177 (40%), Positives = 85/177 (48%)
 Frame = -3

Query: 638 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 459
           M+++GRV + KLWDRHADE + +FL+DL+IF                             
Sbjct: 1   MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35

Query: 458 VDVIWLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDGVGGDD 279
                        VCS  NDTC+HK Q+KAHAPTP SSLAN  HFIWVL +H +GV  +D
Sbjct: 36  -------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNGVRRND 82

Query: 278 ERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLGRA 108
           ER              GQSRVERHLHH                 RA G GC LL  A
Sbjct: 83  ERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLAAA 134


>ref|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus].
          Length = 206

 Score =  115 bits (288), Expect = 1e-25
 Identities = 72/177 (40%), Positives = 85/177 (48%)
 Frame = -3

Query: 638 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 459
           M+++GRV + KLWDRHADE + +FL+DL+IF                             
Sbjct: 1   MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35

Query: 458 VDVIWLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDGVGGDD 279
                        VCS  NDTC+HK Q+KAHAPTP SSLAN  HFIWVL +H +GV  +D
Sbjct: 36  -------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNGVRRND 82

Query: 278 ERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLGRA 108
           ER              GQSRVERHLHH                 RA G GC LL  A
Sbjct: 83  ERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLAAA 134


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 64,098,037
Number of extensions: 1605797
Number of successful extensions: 3413
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3410
Number of HSP's successfully gapped: 4
Length of query: 648
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 539
Effective length of database: 14,074,782
Effective search space: 7586307498
Effective search space used: 7586307498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000904
         (1945 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534119.2| PREDICTED: similar to integral membrane protein...   455   e-128
Alignment   gi|XP_543282.2| PREDICTED: similar to Integral membrane protein...   219   1e-56
Alignment   gi|XP_861283.1| PREDICTED: similar to integral membrane protein...   198   1e-50
Alignment   gi|XP_861254.1| PREDICTED: similar to integral membrane protein...   148   2e-35

>ref|XP_534119.2| PREDICTED: similar to integral membrane protein 2B [Canis
           familiaris].
          Length = 258

 Score =  455 bits (1170), Expect = e-128
 Identities = 215/226 (95%), Positives = 222/226 (98%)
 Frame = +3

Query: 315 DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVI 494
           DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDV+
Sbjct: 32  DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVL 91

Query: 495 LNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDL 674
           LNEP A+APAARYQTIEENIKIFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDL
Sbjct: 92  LNEPSADAPAARYQTIEENIKIFEEDEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDL 151

Query: 675 NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYI 854
           NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF+I
Sbjct: 152 NLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFI 211

Query: 855 YRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           YRLCHDKETYKLQR+ET++GIQKRE SNC TIRHFENKFAVET+IC
Sbjct: 212 YRLCHDKETYKLQRRETIRGIQKREVSNCVTIRHFENKFAVETVIC 257


>ref|XP_543282.2| PREDICTED: similar to Integral membrane protein 2C (Transmembrane
           protein BRI3) (Cerebral protein-14) isoform 2 [Canis
           familiaris].
          Length = 267

 Score =  219 bits (557), Expect = 1e-56
 Identities = 113/273 (41%), Positives = 167/273 (61%), Gaps = 8/273 (2%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW-----CW 362
           MVK++F  A+A  +  K +  +   A   P   I +     +   P   ++       C+
Sbjct: 1   MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60

Query: 363 CMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAARY 533
            +  G+  +L G++    Y+Y+YF L     D+ ++CG+ Y        E   ++ A   
Sbjct: 61  -LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTR 111

Query: 534 QTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTS 713
             +EE++KI+ E+  E I+VPVP+F   DPA+I+HDF + LTAY D++LDKCYVI LNT+
Sbjct: 112 MELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNTT 171

Query: 714 IVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQ 893
           IV+PPRN  ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC  K+TY+L+
Sbjct: 172 IVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLR 231

Query: 894 RKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           R+ T + I KR A +C  IRHFEN F VETLIC
Sbjct: 232 RRATRRRINKRGAKSCNAIRHFENTFVVETLIC 264


>ref|XP_861283.1| PREDICTED: similar to integral membrane protein 2C isoform 3
           isoform 4 [Canis familiaris].
          Length = 220

 Score =  198 bits (504), Expect = 1e-50
 Identities = 94/185 (50%), Positives = 130/185 (70%)
 Frame = +3

Query: 438 LQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADS 617
           L  D+ ++CG+ Y        E   ++ A     +EE++KI+ E+  E I+VPVP+F   
Sbjct: 41  LARDNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERINVPVPQFGGG 92

Query: 618 DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIH 797
           DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN  ELL+N+K GTYLPQ+Y+I 
Sbjct: 93  DPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQ 152

Query: 798 EHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAV 977
           E MV+T+ + + + LG +IY LC  K+TY+L+R+ T + I KR A +C  IRHFEN F V
Sbjct: 153 EEMVVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATRRRINKRGAKSCNAIRHFENTFVV 212

Query: 978 ETLIC 992
           ETLIC
Sbjct: 213 ETLIC 217


>ref|XP_861254.1| PREDICTED: similar to integral membrane protein 2C isoform 2
           isoform 3 [Canis familiaris].
          Length = 230

 Score =  148 bits (373), Expect = 2e-35
 Identities = 87/273 (31%), Positives = 136/273 (49%), Gaps = 8/273 (2%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW-----CW 362
           MVK++F  A+A  +  K +  +   A   P   I +     +   P   ++       C+
Sbjct: 1   MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60

Query: 363 CMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAARY 533
            +  G+  +L G++    Y+Y+YF L     D+ ++CG+ Y        E   ++ A   
Sbjct: 61  -LSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQARTR 111

Query: 534 QTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTS 713
             +EE++KI+ E+  E I+VPVP+F   DPA+I+HDF ++                    
Sbjct: 112 MELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRR-------------------- 151

Query: 714 IVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQ 893
                            GTYLPQ+Y+I E MV+T+ + + + LG +IY LC  K+TY+L+
Sbjct: 152 -----------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYRLR 194

Query: 894 RKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           R+ T + I KR A +C  IRHFEN F VETLIC
Sbjct: 195 RRATRRRINKRGAKSCNAIRHFENTFVVETLIC 227


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,330,337
Number of extensions: 1552648
Number of successful extensions: 3344
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3341
Number of HSP's successfully gapped: 5
Length of query: 648
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 539
Effective length of database: 15,240,880
Effective search space: 8214834320
Effective search space used: 8214834320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000904
         (1945 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_068839.1| integral membrane protein 2B [Homo sapiens].         526   e-149
Alignment   gi|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sa...   218   2e-56
Alignment   gi|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sa...   204   2e-52
Alignment   gi|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo...   197   3e-50
Alignment   gi|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo...   172   1e-42
Alignment   gi|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo...   147   4e-35

>ref|NP_068839.1| integral membrane protein 2B [Homo sapiens].
          Length = 266

 Score =  526 bits (1355), Expect = e-149
 Identities = 253/266 (95%), Positives = 260/266 (97%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
           MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD +AVDCKDPD+VVPVGQRRAWCWCMCFG
Sbjct: 1   MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDAVAVDCKDPDDVVPVGQRRAWCWCMCFG 60

Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
           LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEP A+APAA YQTIEENIK
Sbjct: 61  LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPSADAPAALYQTIEENIK 120

Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
           IFEE+ VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL
Sbjct: 121 IFEEEEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 180

Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
           LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF+IYRLCHDKETYKLQR+ET+KGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRETIKGI 240

Query: 918 QKREASNCATIRHFENKFAVETLICS 995
           QKREASNC  IRHFENKFAVETLICS
Sbjct: 241 QKREASNCFAIRHFENKFAVETLICS 266


>ref|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sapiens].
          Length = 267

 Score =  218 bits (554), Expect = 2e-56
 Identities = 115/276 (41%), Positives = 165/276 (59%), Gaps = 11/276 (3%)
 Frame = +3

Query: 198 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRA 353
           MVK++F  A+A        +  A    P S  E L+ P    A + + P      G    
Sbjct: 1   MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56

Query: 354 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 524
               +  G+  +L G++    Y+Y+YF L     D+ + CG+ Y        E   ++  
Sbjct: 57  GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108

Query: 525 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 704
                +EE++KI+ ++  E I+VPVP+F   DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 168

Query: 705 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 884
           NT+IV+PPRN  ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY
Sbjct: 169 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 228

Query: 885 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           +L+R+ T + I KR A NC  IRHFEN F VETLIC
Sbjct: 229 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 264


>ref|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sapiens].
          Length = 263

 Score =  204 bits (520), Expect = 2e-52
 Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 7/272 (2%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW----CWC 365
           MVK+ FN+  A    +K+E +   EAL+    T+        E+    Q +      C  
Sbjct: 1   MVKIAFNTPTA---VQKEEARQDVEALL--SRTVRTQILTGKELRVATQEKEGSSGRCML 55

Query: 366 MCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAA---RYQ 536
              GL+F+LAG+I+GGA +YKYF   P    Y G     D    +E PAN+       + 
Sbjct: 56  TLLGLSFILAGLIVGGACIYKYF--MPKSTIYRGEMCFFD----SEDPANSLRGGEPNFL 109

Query: 537 TIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSI 716
            + E   I E+D +  I VPVP F+DSDPA I+HDF K +TAYLDL L  CY++PLNTSI
Sbjct: 110 PVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSI 169

Query: 717 VMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQR 896
           VMPP+NL+EL   + +G YLPQ+Y++ E +V  + I ++ +LG +IY+LC+++++++L+R
Sbjct: 170 VMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRR 229

Query: 897 KETVKGIQKREASNCATIRHFENKFAVETLIC 992
           ++ + G  KR    C  IRHF N+F VET IC
Sbjct: 230 RDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261


>ref|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo sapiens].
          Length = 220

 Score =  197 bits (501), Expect = 3e-50
 Identities = 93/185 (50%), Positives = 129/185 (69%)
 Frame = +3

Query: 438 LQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADS 617
           L  D+ + CG+ Y        E   ++       +EE++KI+ ++  E I+VPVP+F   
Sbjct: 41  LARDNFFRCGVLY--------EDSLSSQVRTQMELEEDVKIYLDENYERINVPVPQFGGG 92

Query: 618 DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIH 797
           DPA+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN  ELL+N+K GTYLPQ+Y+I 
Sbjct: 93  DPADIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQ 152

Query: 798 EHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAV 977
           E MV+T+ + + + LG +IY LC+ K+TY+L+R+ T + I KR A NC  IRHFEN F V
Sbjct: 153 EEMVVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVV 212

Query: 978 ETLIC 992
           ETLIC
Sbjct: 213 ETLIC 217


>ref|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo sapiens].
          Length = 219

 Score =  172 bits (436), Expect = 1e-42
 Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
 Frame = +3

Query: 498 NEPPANAPAA---RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYL 668
           +E PAN+       +  + E   I E+D +  I VPVP F+DSDPA I+HDF K +TAYL
Sbjct: 50  SEDPANSLRGGEPNFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYL 109

Query: 669 DLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF 848
           DL L  CY++PLNTSIVMPP+NL+EL   + +G YLPQ+Y++ E +V  + I ++ +LG 
Sbjct: 110 DLLLGNCYLMPLNTSIVMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGI 169

Query: 849 YIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           +IY+LC+++++++L+R++ + G  KR    C  IRHF N+F VET IC
Sbjct: 170 FIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 217


>ref|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo sapiens].
          Length = 230

 Score =  147 bits (370), Expect = 4e-35
 Identities = 89/276 (32%), Positives = 134/276 (48%), Gaps = 11/276 (3%)
 Frame = +3

Query: 198 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRA 353
           MVK++F  A+A        +  A    P S  E L+ P    A + + P      G    
Sbjct: 1   MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56

Query: 354 WCWCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPA 524
               +  G+  +L G++    Y+Y+YF L     D+ + CG+ Y        E   ++  
Sbjct: 57  GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFRCGVLY--------EDSLSSQV 108

Query: 525 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 704
                +EE++KI+ ++  E I+VPVP+F   DPA+I+HDF ++                 
Sbjct: 109 RTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRR----------------- 151

Query: 705 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 884
                               GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY
Sbjct: 152 --------------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 191

Query: 885 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           +L+R+ T + I KR A NC  IRHFEN F VETLIC
Sbjct: 192 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 227


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 65,155,939
Number of extensions: 1530293
Number of successful extensions: 3396
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3392
Number of HSP's successfully gapped: 7
Length of query: 648
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 539
Effective length of database: 14,704,088
Effective search space: 7925503432
Effective search space used: 7925503432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000904
         (1945 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032436.1| integral membrane protein 2B [Mus musculus].         521   e-148
Alignment   gi|NP_071862.2| integral membrane protein 2C [Mus musculus].         215   1e-55
Alignment   gi|NP_032435.2| integral membrane protein 2A [Mus musculus].         202   6e-52

>ref|NP_032436.1| integral membrane protein 2B [Mus musculus].
          Length = 266

 Score =  521 bits (1343), Expect = e-148
 Identities = 248/266 (93%), Positives = 260/266 (97%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
           MVKVTFNSALAQKEAKKDEPKS EEALI+PPD +AVDCKDP +VVPVGQRRAWCWCMCFG
Sbjct: 1   MVKVTFNSALAQKEAKKDEPKSSEEALIVPPDAVAVDCKDPGDVVPVGQRRAWCWCMCFG 60

Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
           LAFMLAGVILGGAYLYKYFALQPDDVYYCG+KYIKDDVILNEP A+APAARYQTIEENIK
Sbjct: 61  LAFMLAGVILGGAYLYKYFALQPDDVYYCGLKYIKDDVILNEPSADAPAARYQTIEENIK 120

Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
           IFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP+NL
Sbjct: 121 IFEEDAVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNL 180

Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
           LELLINIKAGTYLPQSYLIHEHMVITDRIEN+D+LGF+IYRLCHDKETYKLQR+ET++GI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENVDNLGFFIYRLCHDKETYKLQRRETIRGI 240

Query: 918 QKREASNCATIRHFENKFAVETLICS 995
           QKREASNC TIRHFENKFAVETLICS
Sbjct: 241 QKREASNCFTIRHFENKFAVETLICS 266


>ref|NP_071862.2| integral membrane protein 2C [Mus musculus].
          Length = 269

 Score =  215 bits (547), Expect = 1e-55
 Identities = 115/274 (41%), Positives = 166/274 (60%), Gaps = 9/274 (3%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPK--SGEEALIIPPDTI----AVDCKDPDEVVPVGQRRAWC 359
           MVK++F  A+A  +A K +    SG  +   P   I    A + + P      G      
Sbjct: 1   MVKISFQPAVAGIKADKADKAAASGPASASAPAAEILLTPAREERPPRHRSRKGGSVGGV 60

Query: 360 WCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAAR 530
             +  G+  +L G++    Y+Y+YF L     D+ ++CG+ Y        E   ++    
Sbjct: 61  CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQIRT 112

Query: 531 YQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNT 710
              +EE++KI+ E+  E I+VPVP+F   DPA+I+HDF + LTAY D++LDKCYVI LNT
Sbjct: 113 RLELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNT 172

Query: 711 SIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKL 890
           +IV+PPRN  ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY+L
Sbjct: 173 TIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVRDKEALGSFIYHLCNGKDTYRL 232

Query: 891 QRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           +R+ T + I KR   NC  IRHFEN F VETLIC
Sbjct: 233 RRRSTRRRINKRGGKNCNAIRHFENTFVVETLIC 266


>ref|NP_032435.2| integral membrane protein 2A [Mus musculus].
          Length = 263

 Score =  202 bits (515), Expect = 6e-52
 Identities = 107/269 (39%), Positives = 163/269 (60%), Gaps = 4/269 (1%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRR----AWCWC 365
           MVK+ FN+  A    +K+E +   EAL+    T+        E+  V Q +      C  
Sbjct: 1   MVKIAFNTPTA---VQKEEARQDVEALV--SRTVRAQILTGKELRVVPQEKDGSSGRCML 55

Query: 366 MCFGLAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIE 545
              GL+F+LAG+I+GGA +YKYF +    +Y+  + +   +  +N  P   P   +  + 
Sbjct: 56  TLLGLSFILAGLIVGGACIYKYF-MPKSTIYHGEMCFFDSEDPVNSIPGGEPY--FLPVT 112

Query: 546 ENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMP 725
           E   I E+D +  I VPVP F+DSDPA I+HDF K +TAYLDL L  CY++PLNTSIVM 
Sbjct: 113 EEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMT 172

Query: 726 PRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKET 905
           P+NL+EL   + +G YLP +Y++ E +V  + I ++ +LG +IY+LC+++++++L+R++ 
Sbjct: 173 PKNLVELFGKLASGKYLPHTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDL 232

Query: 906 VKGIQKREASNCATIRHFENKFAVETLIC 992
           + G  KR    C  IRHF N+F VET IC
Sbjct: 233 LLGFNKRAIDKCWKIRHFPNEFIVETKIC 261


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,643,309
Number of extensions: 1312043
Number of successful extensions: 2904
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2902
Number of HSP's successfully gapped: 3
Length of query: 648
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 540
Effective length of database: 12,373,671
Effective search space: 6681782340
Effective search space used: 6681782340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000904
         (1945 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035834.1| integral membrane protein 2B [Sus scrofa].        545   e-155
Alignment   gi|NP_001116603.1| integral membrane protein 2C [Sus scrofa].        221   1e-57
Alignment   gi|NP_001026968.1| integral membrane protein 2A [Sus scrofa].        198   1e-50

>ref|NP_001035834.1| integral membrane protein 2B [Sus scrofa].
          Length = 266

 Score =  545 bits (1403), Expect = e-155
 Identities = 264/266 (99%), Positives = 264/266 (99%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
           MVKVTFNSALAQKEAKK EPKSGEEALIIPPDT AVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1   MVKVTFNSALAQKEAKKXEPKSGEEALIIPPDTXAVDCKDPDEVVPVGQRRAWCWCMCFG 60

Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 557
           LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK
Sbjct: 61  LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIK 120

Query: 558 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 737
           IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL
Sbjct: 121 IFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNL 180

Query: 738 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 917
           LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI
Sbjct: 181 LELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGI 240

Query: 918 QKREASNCATIRHFENKFAVETLICS 995
           QKREASNCATIRHFENKFAVETLICS
Sbjct: 241 QKREASNCATIRHFENKFAVETLICS 266


>ref|NP_001116603.1| integral membrane protein 2C [Sus scrofa].
          Length = 269

 Score =  221 bits (563), Expect = 1e-57
 Identities = 115/274 (41%), Positives = 166/274 (60%), Gaps = 9/274 (3%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD------TIAVDCKDPDEVVPVGQRRAWC 359
           MVK++F  A+A  +  K +  S   +   P        T A + + P      G      
Sbjct: 1   MVKISFQPAVAGIKGDKADKASASASAPAPAPAAEILLTPAREERPPHHRYKKGSSVGGV 60

Query: 360 WCMCFGLAFMLAGVILGGAYLYKYFALQP---DDVYYCGIKYIKDDVILNEPPANAPAAR 530
             +  G+  +L G++    Y+Y+YF L     D+ ++CG+ Y        E   ++ A  
Sbjct: 61  CYLSMGMVVLLMGLVFASVYIYRYFFLAQLARDNFFHCGVLY--------EDSLSSQART 112

Query: 531 YQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNT 710
              +EE++KI+ E+  E I+VPVP+F   DPA+I+HDF + LTAY D++LDKCYVI LNT
Sbjct: 113 RMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELNT 172

Query: 711 SIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKL 890
           +IV+PPRN  ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY+L
Sbjct: 173 TIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTYRL 232

Query: 891 QRKETVKGIQKREASNCATIRHFENKFAVETLIC 992
           +R+ T + I KR A NC  IRHFEN F VETLIC
Sbjct: 233 RRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 266


>ref|NP_001026968.1| integral membrane protein 2A [Sus scrofa].
          Length = 254

 Score =  198 bits (503), Expect = 1e-50
 Identities = 110/268 (41%), Positives = 159/268 (59%), Gaps = 3/268 (1%)
 Frame = +3

Query: 198 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 377
           MVK+ FN+  A    +K+E +   EAL+   + + V  K+ +           C     G
Sbjct: 1   MVKIAFNTPAA---VQKEEVQQDVEALLSHTE-LQVATKEKEGF------SGRCMLTLVG 50

Query: 378 LAFMLAGVILGGAYLYKYFALQPDDVYYCGIKYIKDDVILNEPPANAPAAR---YQTIEE 548
           L+F+LAG+I+GGA +YKYF   P    Y G     D       PAN+       +  + E
Sbjct: 51  LSFILAGLIVGGACIYKYF--MPKSTIYHGEMCFFDSA----DPANSLQGGEPYFLPVME 104

Query: 549 NIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPP 728
              I E+D +  I VPVP F+DSDPA I+HDF K +TAYLDL L  CY++PLNTSIVMPP
Sbjct: 105 EADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTSIVMPP 164

Query: 729 RNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKETV 908
           + LLEL   +  G YLP +Y++HE +V  + I ++ +LG +IY+LC+++++++L+R++ +
Sbjct: 165 KYLLELFGKLARGKYLPHTYVVHEDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLRRRDLL 224

Query: 909 KGIQKREASNCATIRHFENKFAVETLIC 992
            G  KR    C  IRHF N+F VET IC
Sbjct: 225 LGFNKRAIDKCWKIRHFPNEFIVETKIC 252


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,107,993
Number of extensions: 1171614
Number of successful extensions: 2161
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2159
Number of HSP's successfully gapped: 3
Length of query: 648
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 543
Effective length of database: 8,729,747
Effective search space: 4740252621
Effective search space used: 4740252621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000904
         (1945 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr11                                                        1451   0.0  
Sscrofa_Chr18                                                         129   6e-27

>Sscrofa_Chr11 
||          Length = 87690581

 Score = 1451 bits (732), Expect = 0.0
 Identities = 732/732 (100%)
 Strand = Plus / Minus

                                                                            
Query: 911      aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 970
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803390 aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 19803331

                                                                            
Query: 971      tgccgtcgaaactttaatttgttcttgaacagtcaagaaaaacattatggagaaaaactt 1030
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803330 tgccgtcgaaactttaatttgttcttgaacagtcaagaaaaacattatggagaaaaactt 19803271

                                                                            
Query: 1031     aatacacagcataataaccccaccctttgtattttgtgcagtgattattttttaaaatct 1090
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803270 aatacacagcataataaccccaccctttgtattttgtgcagtgattattttttaaaatct 19803211

                                                                            
Query: 1091     tctttcatgtaagtagcaaacagggcttcactatcttttcatctcattgattcaattaaa 1150
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803210 tctttcatgtaagtagcaaacagggcttcactatcttttcatctcattgattcaattaaa 19803151

                                                                            
Query: 1151     accattaccttttaaaaatcttttttcctttccaagtgtggtgtcttttatcttgaatta 1210
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803150 accattaccttttaaaaatcttttttcctttccaagtgtggtgtcttttatcttgaatta 19803091

                                                                            
Query: 1211     gtagttgtatgaagtcataggtaatagtacacttcaccatagacctttaggtgttaagaa 1270
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803090 gtagttgtatgaagtcataggtaatagtacacttcaccatagacctttaggtgttaagaa 19803031

                                                                            
Query: 1271     gaattcagatttccttaattcatttatccagatttttatgttttaattatgcattttcaa 1330
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803030 gaattcagatttccttaattcatttatccagatttttatgttttaattatgcattttcaa 19802971

                                                                            
Query: 1331     gaggaggggttatctaataatcagatatatgcatacgtaaaaatggaccacagtgactta 1390
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802970 gaggaggggttatctaataatcagatatatgcatacgtaaaaatggaccacagtgactta 19802911

                                                                            
Query: 1391     tttgtagttgttgccctgctacttggttagagcatttgaacacacattttgattttcctc 1450
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802910 tttgtagttgttgccctgctacttggttagagcatttgaacacacattttgattttcctc 19802851

                                                                            
Query: 1451     taattaaaatgtgcagtattttcagtgtcatatttaactatttagagtataatttccacc 1510
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802850 taattaaaatgtgcagtattttcagtgtcatatttaactatttagagtataatttccacc 19802791

                                                                            
Query: 1511     tcgatgttttaatatcctaggcatctgctgtaatgatattttagaaaatgtttggaattt 1570
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802790 tcgatgttttaatatcctaggcatctgctgtaatgatattttagaaaatgtttggaattt 19802731

                                                                            
Query: 1571     aagaaataacctgtattaccaatttgtataatctatactgtgcaacagaatataaatatc 1630
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19802730 aagaaataacctgtattaccaatttgtataatctatactgtgcaacagaatataaatatc 19802671

                            
Query: 1631     acaaagttgttt 1642
                ||||||||||||
Sbjct: 19802670 acaaagttgttt 19802659



 Score =  410 bits (207), Expect = e-111
 Identities = 207/207 (100%)
 Strand = Plus / Minus

                                                                            
Query: 444      ccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatgag 503
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807475 ccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatgag 19807416

                                                                            
Query: 504      cctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatcttc 563
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807415 cctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatcttc 19807356

                                                                            
Query: 564      gaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccct 623
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807355 gaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccct 19807296

                                           
Query: 624      gccaacattgtgcatgactttaacaag 650
                |||||||||||||||||||||||||||
Sbjct: 19807295 gccaacattgtgcatgactttaacaag 19807269



 Score =  309 bits (156), Expect = 3e-81
 Identities = 156/156 (100%)
 Strand = Plus / Minus

                                                                            
Query: 760      aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805419 aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 19805360

                                                                            
Query: 820      gcattgaaaacatcgatcacctgggcttctatatttatcgactgtgccatgacaaggaaa 879
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805359 gcattgaaaacatcgatcacctgggcttctatatttatcgactgtgccatgacaaggaaa 19805300

                                                    
Query: 880      cttacaaactgcagcgcaaagaaaccgttaaaggta 915
                ||||||||||||||||||||||||||||||||||||
Sbjct: 19805299 cttacaaactgcagcgcaaagaaaccgttaaaggta 19805264



 Score =  285 bits (144), Expect = 4e-74
 Identities = 147/148 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1        gtcgccgccctcgcctgggagctgcgaggcttcagtaaccctgcagcagtagccacctct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874811 gtcgccgccctcgcctgggagctgcgaggcttcagtaaccctgcagcagtagccacctct 19874752

                                                                            
Query: 61       gtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcggagccctgccgagg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874751 gtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcggagccctgccgagg 19874692

                                            
Query: 121      aggctgcagccgtagccaggagcccgca 148
                |||||||||||||||| |||||||||||
Sbjct: 19874691 aggctgcagccgtagctaggagcccgca 19874664



 Score =  260 bits (131), Expect = 3e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                            
Query: 313      aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 372
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851903 aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 19851844

                                                                            
Query: 373      ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 432
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851843 ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 19851784

                           
Query: 433      ttgcacttcaa 443
                |||||||||||
Sbjct: 19851783 ttgcacttcaa 19851773



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                            
Query: 649      agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 708
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19806019 agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 19805960

                                                                      
Query: 709      cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 762
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805959 cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 19805906



 Score =  192 bits (97), Expect = 5e-46
 Identities = 111/118 (94%)
 Strand = Plus / Minus

                                                                            
Query: 198      atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 257
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874614 atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 19874555

                                                                          
Query: 258      aagagcggagaggaggcgctcatcatnnnnnnngacaccatcgcggtggactgcaagg 315
                ||||||||||||||||||||||||||       |||||||||||||||||||||||||
Sbjct: 19874554 aagagcggagaggaggcgctcatcatcccccccgacaccatcgcggtggactgcaagg 19874497


>Sscrofa_Chr18 
||          Length = 61220071

 Score =  129 bits (65), Expect = 6e-27
 Identities = 74/77 (96%)
 Strand = Plus / Plus

                                                                           
Query: 1092    ctttcatgtaagtagcaaacagggcttcactatcttttcatctcattgattcaattaaaa 1151
               |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 9458529 ctttcatgtaagtagcaaacagggcttcactatcttttcatcccattaattcaattaaaa 9458588

                                
Query: 1152    ccattaccttttaaaaa 1168
               ||| |||||||||||||
Sbjct: 9458589 ccactaccttttaaaaa 9458605



 Score =  119 bits (60), Expect = 6e-24
 Identities = 87/94 (92%), Gaps = 4/94 (4%)
 Strand = Plus / Plus

                                                                           
Query: 992     ttcttgaacagtcaagaaaaacattatggagaaaaac-ttaatacacagcataataaccc 1050
               |||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||
Sbjct: 9458371 ttcttgaacagtcaagaaaagcattatggagaaaaactttaatacacagc---ataaccc 9458427

                                                 
Query: 1051    caccctttgtattttgtgcagtgattatttttta 1084
               ||||||||||||||| ||||||||||| ||||||
Sbjct: 9458428 caccctttgtattttatgcagtgattacttttta 9458461


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,018,286
Number of extensions: 634
Number of successful extensions: 634
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 9
Length of query: 1945
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1923
Effective length of database: 2,808,408,574
Effective search space: 5400569687802
Effective search space used: 5400569687802
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)