Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000958
(1007 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776612.1| osteopontin precursor [Bos taurus]. 138 9e-33
>ref|NP_776612.1| osteopontin precursor [Bos taurus].
Length = 278
Score = 138 bits (347), Expect = 9e-33
Identities = 70/85 (82%), Positives = 74/85 (87%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MRIAVI FCL G ASALPVK T+SGSSEEK L+NKY DAVA LKPDPSQKQTFL PQN+
Sbjct: 1 MRIAVICFCLLGIASALPVKPTSSGSSEEKQLNNKYPDAVAIWLKPDPSQKQTFLTPQNS 60
Query: 284 ISSEETDDFKQETLPSKSNESPEQT 358
+SSEETDD KQ TLPSKSNESPEQT
Sbjct: 61 VSSEETDDNKQNTLPSKSNESPEQT 85
Score = 85.5 bits (210), Expect(2) = 1e-21
Identities = 51/103 (49%), Positives = 59/103 (57%)
Frame = +2
Query: 554 NDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVAS 733
NDGRGDSV YGL+S+SKKFRRS Q DATEED TSH+ESEE PK
Sbjct: 149 NDGRGDSVAYGLKSRSKKFRRSNVQSPDATEEDFTSHIESEEMHDAPK------------ 196
Query: 734 DLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
+TSQ D S ET S E SKE T + D +++HS
Sbjct: 197 ----------KTSQLTDHSKETNSSELSKELTPKAKD-KNKHS 228
Score = 36.2 bits (82), Expect(2) = 1e-21
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +1
Query: 862 HVIESQENPKVSQESTAMKTSWSQTLRAKKKNT*NFKFSHELKSASSE 1005
++IESQEN K+SQE +++ ++++ + SHEL SASSE
Sbjct: 229 NLIESQENSKLSQEFHSLEDKLDLDHKSEEDKHLKIRISHELDSASSE 276
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,037,101
Number of extensions: 988095
Number of successful extensions: 3365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3337
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000958
(1007 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1... 100 9e-25
>ref|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1 [Canis familiaris].
Length = 326
Score = 100 bits (249), Expect(2) = 9e-25
Identities = 52/102 (50%), Positives = 69/102 (67%)
Frame = +2
Query: 557 DGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVASD 736
DGRGDSV YGLRSKSKK + E Q D+TEED TS V+S + A+L+++ + SD
Sbjct: 169 DGRGDSVAYGLRSKSKKSHKYEVQYPDSTEEDFTSLVKSASMEDDFNAVLLSRTVRGTSD 228
Query: 737 LDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
DS KDSQETSQ DD S+ET+ ++ S+EY ++ D + HS
Sbjct: 229 RDSHAKDSQETSQLDDHSMETKGRKHSQEYKLRASDESNMHS 270
Score = 32.0 bits (71), Expect(2) = 9e-25
Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +3
Query: 909 SHEDQLVPDSKSEEE-KHLKLQV 974
SHE +L+ DSKSEEE KHLK V
Sbjct: 292 SHEKELIVDSKSEEEDKHLKFHV 314
Score = 89.7 bits (221), Expect = 4e-18
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Frame = +2
Query: 98 ITMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQ 277
+TMRIAVI FCL G A A+P+K +SGSSEEK L NKY AVAT LKPDPSQKQTFLA Q
Sbjct: 40 LTMRIAVICFCLLGIAYAIPIKHADSGSSEEKQLYNKYPGAVATWLKPDPSQKQTFLALQ 99
Query: 278 --NTISSEETDDFKQE 319
++ S+E DD ++
Sbjct: 100 TFSSKSNESHDDVDED 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,083,173
Number of extensions: 932393
Number of successful extensions: 3540
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3537
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000958
(1007 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035147.1| osteopontin isoform a precursor [Homo sapien... 125 1e-32
Alignment gi|NP_000573.1| osteopontin isoform b precursor [Homo sapiens]. 124 1e-32
Alignment gi|NP_001035149.1| osteopontin isoform c precursor [Homo sapien... 124 1e-32
>ref|NP_001035147.1| osteopontin isoform a precursor [Homo sapiens].
Length = 314
Score = 124 bits (311), Expect(2) = 1e-32
Identities = 66/105 (62%), Positives = 78/105 (74%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 154 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 213
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
SD DS+ KDS ETSQ DD+S ET S +QS+ Y + D +EHS
Sbjct: 214 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHS 258
Score = 34.3 bits (77), Expect(2) = 1e-32
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 906 HSHEDQLVPDSKS-EEEKHLKLQV 974
HSHED LV D KS EE+KHLK ++
Sbjct: 279 HSHEDMLVVDPKSKEEDKHLKFRI 302
Score = 125 bits (314), Expect = 6e-29
Identities = 63/81 (77%), Positives = 67/81 (82%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MRIAVI FCL G A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ LAPQN
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA 60
Query: 284 ISSEETDDFKQETLPSKSNES 346
+SSEET+DFKQETLPSKSNES
Sbjct: 61 VSSEETNDFKQETLPSKSNES 81
>ref|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].
Length = 300
Score = 124 bits (311), Expect(2) = 1e-32
Identities = 66/105 (62%), Positives = 78/105 (74%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 140 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 199
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
SD DS+ KDS ETSQ DD+S ET S +QS+ Y + D +EHS
Sbjct: 200 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHS 244
Score = 34.3 bits (77), Expect(2) = 1e-32
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 906 HSHEDQLVPDSKS-EEEKHLKLQV 974
HSHED LV D KS EE+KHLK ++
Sbjct: 265 HSHEDMLVVDPKSKEEDKHLKFRI 288
Score = 92.8 bits (229), Expect = 4e-19
Identities = 52/81 (64%), Positives = 54/81 (66%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MRIAVI FCL G A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ LAPQ
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ-- 58
Query: 284 ISSEETDDFKQETLPSKSNES 346
TLPSKSNES
Sbjct: 59 ------------TLPSKSNES 67
>ref|NP_001035149.1| osteopontin isoform c precursor [Homo sapiens].
Length = 287
Score = 124 bits (311), Expect(2) = 1e-32
Identities = 66/105 (62%), Positives = 78/105 (74%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D DGRGDSVVYGLRSKSKKFRR + Q DAT+ED+TSH+ESEE +G KAI VAQ L+
Sbjct: 127 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 186
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
SD DS+ KDS ETSQ DD+S ET S +QS+ Y + D +EHS
Sbjct: 187 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHS 231
Score = 34.3 bits (77), Expect(2) = 1e-32
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 906 HSHEDQLVPDSKS-EEEKHLKLQV 974
HSHED LV D KS EE+KHLK ++
Sbjct: 252 HSHEDMLVVDPKSKEEDKHLKFRI 275
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/81 (53%), Positives = 47/81 (58%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MRIAVI FCL G A+PVKQ +SGSSEEK QN
Sbjct: 1 MRIAVICFCLLGITCAIPVKQADSGSSEEK---------------------------QNA 33
Query: 284 ISSEETDDFKQETLPSKSNES 346
+SSEET+DFKQETLPSKSNES
Sbjct: 34 VSSEETNDFKQETLPSKSNES 54
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,418,903
Number of extensions: 914125
Number of successful extensions: 3312
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3295
Number of HSP's successfully gapped: 9
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000958
(1007 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculu... 118 8e-27
Alignment gi|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculu... 116 3e-26
Alignment gi|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculu... 115 4e-26
Alignment gi|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus]. 114 2e-25
Alignment gi|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculu... 114 2e-25
>ref|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculus].
Length = 311
Score = 118 bits (295), Expect = 8e-27
Identities = 59/82 (71%), Positives = 67/82 (81%)
Frame = +2
Query: 101 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 280
TMR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ LAPQN
Sbjct: 16 TMRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQN 75
Query: 281 TISSEETDDFKQETLPSKSNES 346
+SSEE DDFKQETLPS SNES
Sbjct: 76 AVSSEEKDDFKQETLPSNSNES 97
Score = 87.8 bits (216), Expect(2) = 4e-20
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 156 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 215
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
SD D+ K S E+SQ D+ S+ET E SKE
Sbjct: 216 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 247
Score = 28.9 bits (63), Expect(2) = 4e-20
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
+ HSH+D+LV D KS E++++LK ++
Sbjct: 274 KFHSHKDKLVLDPKSKEDDRYLKFRI 299
>ref|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculus].
Length = 295
Score = 116 bits (290), Expect = 3e-26
Identities = 58/81 (71%), Positives = 66/81 (81%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQNA 60
Query: 284 ISSEETDDFKQETLPSKSNES 346
+SSEE DDFKQETLPS SNES
Sbjct: 61 VSSEEKDDFKQETLPSNSNES 81
Score = 87.8 bits (216), Expect(2) = 4e-20
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 140 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 199
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
SD D+ K S E+SQ D+ S+ET E SKE
Sbjct: 200 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 231
Score = 28.9 bits (63), Expect(2) = 4e-20
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
+ HSH+D+LV D KS E++++LK ++
Sbjct: 258 KFHSHKDKLVLDPKSKEDDRYLKFRI 283
>ref|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculus].
Length = 310
Score = 115 bits (289), Expect = 4e-26
Identities = 60/82 (73%), Positives = 67/82 (81%)
Frame = +2
Query: 101 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 280
TMR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 16 TMRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQN 74
Query: 281 TISSEETDDFKQETLPSKSNES 346
+SSEE DDFKQETLPS SNES
Sbjct: 75 AVSSEEKDDFKQETLPSNSNES 96
Score = 87.8 bits (216), Expect(2) = 4e-20
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 155 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 214
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
SD D+ K S E+SQ D+ S+ET E SKE
Sbjct: 215 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 246
Score = 28.9 bits (63), Expect(2) = 4e-20
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
+ HSH+D+LV D KS E++++LK ++
Sbjct: 273 KFHSHKDKLVLDPKSKEDDRYLKFRI 298
>ref|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].
Length = 294
Score = 114 bits (284), Expect = 2e-25
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59
Query: 284 ISSEETDDFKQETLPSKSNES 346
+SSEE DDFKQETLPS SNES
Sbjct: 60 VSSEEKDDFKQETLPSNSNES 80
Score = 87.8 bits (216), Expect(2) = 4e-20
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
SD D+ K S E+SQ D+ S+ET E SKE
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 230
Score = 28.9 bits (63), Expect(2) = 4e-20
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
+ HSH+D+LV D KS E++++LK ++
Sbjct: 257 KFHSHKDKLVLDPKSKEDDRYLKFRI 282
>ref|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculus].
Length = 294
Score = 114 bits (284), Expect = 2e-25
Identities = 59/81 (72%), Positives = 66/81 (81%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MR+AVI FCL+G AS+LPVK T+SGSSEEKL S + D +AT L PDPSQKQ LAPQN
Sbjct: 1 MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59
Query: 284 ISSEETDDFKQETLPSKSNES 346
+SSEE DDFKQETLPS SNES
Sbjct: 60 VSSEEKDDFKQETLPSNSNES 80
Score = 87.8 bits (216), Expect(2) = 4e-20
Identities = 48/92 (52%), Positives = 63/92 (68%)
Frame = +2
Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
D +GRGDS+ YGLRSKS+ F+ S+ Q DAT+EDLTSH++S E+ + I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198
Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
SD D+ K S E+SQ D+ S+ET E SKE
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 230
Score = 28.9 bits (63), Expect(2) = 4e-20
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +3
Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
+ HSH+D+LV D KS E++++LK ++
Sbjct: 257 KFHSHKDKLVLDPKSKEDDRYLKFRI 282
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,039,970
Number of extensions: 767261
Number of successful extensions: 2733
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 15
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000958
(1007 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999188.1| osteopontin precursor [Sus scrofa]. 354 e-106
>ref|NP_999188.1| osteopontin precursor [Sus scrofa].
Length = 303
Score = 354 bits (909), Expect(2) = e-106
Identities = 192/263 (73%), Positives = 197/263 (74%)
Frame = +2
Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT
Sbjct: 1 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 60
Query: 284 ISSEETDDFKQETLPSKSNESPEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXX 463
ISSEETDDFKQETLPSKSNESPEQT R
Sbjct: 61 ISSEETDDFKQETLPSKSNESPEQTDDVDDDDDEDHVDSRDTDSEEADHADDADRSDESH 120
Query: 464 XXXXXXXLXXXXXXXXXXXXXXXXXXXGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 643
L GDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT
Sbjct: 121 HSDESDELVTDFPTDTPATDVTPAVPTGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 180
Query: 644 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE
Sbjct: 181 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 240
Query: 824 YTIQTYDGRHEHSM*LRVRKIPK 892
YTI+TYDG +EHS + ++ PK
Sbjct: 241 YTIKTYDGSNEHSNVIESQENPK 263
Score = 49.3 bits (116), Expect(2) = e-106
Identities = 23/35 (65%), Positives = 29/35 (82%), Gaps = 4/35 (11%)
Frame = +3
Query: 882 KSQSQPRI----HSHEDQLVPDSKSEEEKHLKLQV 974
+SQ P++ HSHED+LVPDSKSEE+KHLKL+V
Sbjct: 257 ESQENPKVSQEFHSHEDKLVPDSKSEEDKHLKLRV 291
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,306,029
Number of extensions: 750926
Number of successful extensions: 2104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2097
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000958
(1007 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 658 0.0
>Sscrofa_Chr08
|| Length = 148491826
Score = 658 bits (332), Expect = 0.0
Identities = 374/384 (97%), Gaps = 3/384 (0%)
Strand = Plus / Minus
Query: 626 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308748 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 140308689
Query: 686 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308688 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 140308629
Query: 746 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308628 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 140308569
Query: 806 caggagcagtccaaagaatacacgatccagacctatgatgggaggcatgagcattcc-at 864
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 140308568 caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 140308509
Query: 865 gtgattgagagtcaggaaaatcccaaagtcagccaagaa-tccacagccatgaagaccag 923
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 140308508 gtgattgagagtcaggaaaatcccaaagtcagccaagaattccacagccatgaagacaag 140308449
Query: 924 ctggtcccagactctaagagcgaagaagaaaaacacctgaaacttcaagttttctcatga 983
||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct: 140308448 ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgag-tttctcatga 140308390
Query: 984 attaaagagtgcgtcttctgagat 1007
|||| |||||||||||||||||||
Sbjct: 140308389 attagagagtgcgtcttctgagat 140308366
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 446 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309599 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 140309540
Query: 506 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309539 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 140309480
Query: 566 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309479 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 140309420
Query: 626 cag 628
|||
Sbjct: 140309419 cag 140309417
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 5 gcagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140315417 gcagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactg 140315358
Query: 65 gactcttcgcggggctgcagaccaagg 91
|||||||||||||||||||||||||||
Sbjct: 140315357 gactcttcgcggggctgcagaccaagg 140315331
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 196 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140311218 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 140311159
Query: 256 gcagactttcctagcgccacag 277
||||||||||||||||||||||
Sbjct: 140311158 gcagactttcctagcgccacag 140311137
Score = 141 bits (71), Expect = 8e-31
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 89 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140314186 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 140314127
Query: 149 gcccttccagt 159
|||||||||||
Sbjct: 140314126 gcccttccagt 140314116
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 275 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 319
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140310853 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 140310809
Score = 81.8 bits (41), Expect = 7e-13
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 318 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 358
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309727 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 140309687
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 158 gttaaacagactaattctggcagctcggaggaaaagctg 196
|||||||||||||||||||||||||||||||||||||||
Sbjct: 140314005 gttaaacagactaattctggcagctcggaggaaaagctg 140313967
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,336,776
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 8
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)