Animal-Genome cDNA 20110601C-000958


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000958
         (1007 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776612.1| osteopontin precursor [Bos taurus].                  138   9e-33

>ref|NP_776612.1| osteopontin precursor [Bos taurus].
          Length = 278

 Score =  138 bits (347), Expect = 9e-33
 Identities = 70/85 (82%), Positives = 74/85 (87%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MRIAVI FCL G ASALPVK T+SGSSEEK L+NKY DAVA  LKPDPSQKQTFL PQN+
Sbjct: 1   MRIAVICFCLLGIASALPVKPTSSGSSEEKQLNNKYPDAVAIWLKPDPSQKQTFLTPQNS 60

Query: 284 ISSEETDDFKQETLPSKSNESPEQT 358
           +SSEETDD KQ TLPSKSNESPEQT
Sbjct: 61  VSSEETDDNKQNTLPSKSNESPEQT 85



 Score = 85.5 bits (210), Expect(2) = 1e-21
 Identities = 51/103 (49%), Positives = 59/103 (57%)
 Frame = +2

Query: 554 NDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVAS 733
           NDGRGDSV YGL+S+SKKFRRS  Q  DATEED TSH+ESEE    PK            
Sbjct: 149 NDGRGDSVAYGLKSRSKKFRRSNVQSPDATEEDFTSHIESEEMHDAPK------------ 196

Query: 734 DLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
                     +TSQ  D S ET S E SKE T +  D +++HS
Sbjct: 197 ----------KTSQLTDHSKETNSSELSKELTPKAKD-KNKHS 228



 Score = 36.2 bits (82), Expect(2) = 1e-21
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +1

Query: 862  HVIESQENPKVSQESTAMKTSWSQTLRAKKKNT*NFKFSHELKSASSE 1005
            ++IESQEN K+SQE  +++       ++++      + SHEL SASSE
Sbjct: 229  NLIESQENSKLSQEFHSLEDKLDLDHKSEEDKHLKIRISHELDSASSE 276


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,037,101
Number of extensions: 988095
Number of successful extensions: 3365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3337
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,273,310
Effective search space: 3311407920
Effective search space used: 3311407920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000958
         (1007 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1...   100   9e-25

>ref|XP_535649.2| PREDICTED: similar to secreted phosphoprotein 1 [Canis familiaris].
          Length = 326

 Score =  100 bits (249), Expect(2) = 9e-25
 Identities = 52/102 (50%), Positives = 69/102 (67%)
 Frame = +2

Query: 557 DGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHVASD 736
           DGRGDSV YGLRSKSKK  + E Q  D+TEED TS V+S   +    A+L+++ +   SD
Sbjct: 169 DGRGDSVAYGLRSKSKKSHKYEVQYPDSTEEDFTSLVKSASMEDDFNAVLLSRTVRGTSD 228

Query: 737 LDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
            DS  KDSQETSQ DD S+ET+ ++ S+EY ++  D  + HS
Sbjct: 229 RDSHAKDSQETSQLDDHSMETKGRKHSQEYKLRASDESNMHS 270



 Score = 32.0 bits (71), Expect(2) = 9e-25
 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +3

Query: 909 SHEDQLVPDSKSEEE-KHLKLQV 974
           SHE +L+ DSKSEEE KHLK  V
Sbjct: 292 SHEKELIVDSKSEEEDKHLKFHV 314



 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
 Frame = +2

Query: 98  ITMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQ 277
           +TMRIAVI FCL G A A+P+K  +SGSSEEK L NKY  AVAT LKPDPSQKQTFLA Q
Sbjct: 40  LTMRIAVICFCLLGIAYAIPIKHADSGSSEEKQLYNKYPGAVATWLKPDPSQKQTFLALQ 99

Query: 278 --NTISSEETDDFKQE 319
             ++ S+E  DD  ++
Sbjct: 100 TFSSKSNESHDDVDED 115


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,083,173
Number of extensions: 932393
Number of successful extensions: 3540
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3537
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 232
Effective length of database: 15,440,896
Effective search space: 3582287872
Effective search space used: 3582287872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000958
         (1007 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035147.1| osteopontin isoform a precursor [Homo sapien...   125   1e-32
Alignment   gi|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].      124   1e-32
Alignment   gi|NP_001035149.1| osteopontin isoform c precursor [Homo sapien...   124   1e-32

>ref|NP_001035147.1| osteopontin isoform a precursor [Homo sapiens].
          Length = 314

 Score =  124 bits (311), Expect(2) = 1e-32
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 154 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 213

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  +  D  +EHS
Sbjct: 214 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHS 258



 Score = 34.3 bits (77), Expect(2) = 1e-32
 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +3

Query: 906 HSHEDQLVPDSKS-EEEKHLKLQV 974
           HSHED LV D KS EE+KHLK ++
Sbjct: 279 HSHEDMLVVDPKSKEEDKHLKFRI 302



 Score =  125 bits (314), Expect = 6e-29
 Identities = 63/81 (77%), Positives = 67/81 (82%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MRIAVI FCL G   A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ  LAPQN 
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA 60

Query: 284 ISSEETDDFKQETLPSKSNES 346
           +SSEET+DFKQETLPSKSNES
Sbjct: 61  VSSEETNDFKQETLPSKSNES 81


>ref|NP_000573.1| osteopontin isoform b precursor [Homo sapiens].
          Length = 300

 Score =  124 bits (311), Expect(2) = 1e-32
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 140 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 199

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  +  D  +EHS
Sbjct: 200 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHS 244



 Score = 34.3 bits (77), Expect(2) = 1e-32
 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +3

Query: 906 HSHEDQLVPDSKS-EEEKHLKLQV 974
           HSHED LV D KS EE+KHLK ++
Sbjct: 265 HSHEDMLVVDPKSKEEDKHLKFRI 288



 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 52/81 (64%), Positives = 54/81 (66%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MRIAVI FCL G   A+PVKQ +SGSSEEK L NKY DAVAT L PDPSQKQ  LAPQ  
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ-- 58

Query: 284 ISSEETDDFKQETLPSKSNES 346
                       TLPSKSNES
Sbjct: 59  ------------TLPSKSNES 67


>ref|NP_001035149.1| osteopontin isoform c precursor [Homo sapiens].
          Length = 287

 Score =  124 bits (311), Expect(2) = 1e-32
 Identities = 66/105 (62%), Positives = 78/105 (74%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  DGRGDSVVYGLRSKSKKFRR + Q  DAT+ED+TSH+ESEE +G  KAI VAQ L+ 
Sbjct: 127 DTYDGRGDSVVYGLRSKSKKFRRPDIQYPDATDEDITSHMESEELNGAYKAIPVAQDLNA 186

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKEYTIQTYDGRHEHS 862
            SD DS+ KDS ETSQ DD+S ET S +QS+ Y  +  D  +EHS
Sbjct: 187 PSDWDSRGKDSYETSQLDDQSAETHSHKQSRLYKRKANDESNEHS 231



 Score = 34.3 bits (77), Expect(2) = 1e-32
 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +3

Query: 906 HSHEDQLVPDSKS-EEEKHLKLQV 974
           HSHED LV D KS EE+KHLK ++
Sbjct: 252 HSHEDMLVVDPKSKEEDKHLKFRI 275



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 43/81 (53%), Positives = 47/81 (58%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MRIAVI FCL G   A+PVKQ +SGSSEEK                           QN 
Sbjct: 1   MRIAVICFCLLGITCAIPVKQADSGSSEEK---------------------------QNA 33

Query: 284 ISSEETDDFKQETLPSKSNES 346
           +SSEET+DFKQETLPSKSNES
Sbjct: 34  VSSEETNDFKQETLPSKSNES 54


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,418,903
Number of extensions: 914125
Number of successful extensions: 3312
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3295
Number of HSP's successfully gapped: 9
Length of query: 335
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 232
Effective length of database: 14,901,872
Effective search space: 3457234304
Effective search space used: 3457234304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000958
         (1007 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculu...   118   8e-27
Alignment   gi|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculu...   116   3e-26
Alignment   gi|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculu...   115   4e-26
Alignment   gi|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].      114   2e-25
Alignment   gi|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculu...   114   2e-25

>ref|NP_001191130.1| osteopontin isoform 1 precursor [Mus musculus].
          Length = 311

 Score =  118 bits (295), Expect = 8e-27
 Identities = 59/82 (71%), Positives = 67/82 (81%)
 Frame = +2

Query: 101 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 280
           TMR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ  LAPQN
Sbjct: 16  TMRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQN 75

Query: 281 TISSEETDDFKQETLPSKSNES 346
            +SSEE DDFKQETLPS SNES
Sbjct: 76  AVSSEEKDDFKQETLPSNSNES 97



 Score = 87.8 bits (216), Expect(2) = 4e-20
 Identities = 48/92 (52%), Positives = 63/92 (68%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 156 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 215

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
            SD D+  K S E+SQ D+ S+ET   E SKE
Sbjct: 216 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 247



 Score = 28.9 bits (63), Expect(2) = 4e-20
 Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
           + HSH+D+LV D KS E++++LK ++
Sbjct: 274 KFHSHKDKLVLDPKSKEDDRYLKFRI 299


>ref|NP_001191132.1| osteopontin isoform 3 precursor [Mus musculus].
          Length = 295

 Score =  116 bits (290), Expect = 3e-26
 Identities = 58/81 (71%), Positives = 66/81 (81%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MR+AVI FCL+G AS+LPVK T+SGSSEEK L + + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKKLYSLHPDPIATWLVPDPSQKQNLLAPQNA 60

Query: 284 ISSEETDDFKQETLPSKSNES 346
           +SSEE DDFKQETLPS SNES
Sbjct: 61  VSSEEKDDFKQETLPSNSNES 81



 Score = 87.8 bits (216), Expect(2) = 4e-20
 Identities = 48/92 (52%), Positives = 63/92 (68%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 140 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 199

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
            SD D+  K S E+SQ D+ S+ET   E SKE
Sbjct: 200 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 231



 Score = 28.9 bits (63), Expect(2) = 4e-20
 Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
           + HSH+D+LV D KS E++++LK ++
Sbjct: 258 KFHSHKDKLVLDPKSKEDDRYLKFRI 283


>ref|NP_001191131.1| osteopontin isoform 2 precursor [Mus musculus].
          Length = 310

 Score =  115 bits (289), Expect = 4e-26
 Identities = 60/82 (73%), Positives = 67/82 (81%)
 Frame = +2

Query: 101 TMRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQN 280
           TMR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN
Sbjct: 16  TMRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQN 74

Query: 281 TISSEETDDFKQETLPSKSNES 346
            +SSEE DDFKQETLPS SNES
Sbjct: 75  AVSSEEKDDFKQETLPSNSNES 96



 Score = 87.8 bits (216), Expect(2) = 4e-20
 Identities = 48/92 (52%), Positives = 63/92 (68%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 155 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 214

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
            SD D+  K S E+SQ D+ S+ET   E SKE
Sbjct: 215 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 246



 Score = 28.9 bits (63), Expect(2) = 4e-20
 Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
           + HSH+D+LV D KS E++++LK ++
Sbjct: 273 KFHSHKDKLVLDPKSKEDDRYLKFRI 298


>ref|NP_033289.2| osteopontin isoform 4 precursor [Mus musculus].
          Length = 294

 Score =  114 bits (284), Expect = 2e-25
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59

Query: 284 ISSEETDDFKQETLPSKSNES 346
           +SSEE DDFKQETLPS SNES
Sbjct: 60  VSSEEKDDFKQETLPSNSNES 80



 Score = 87.8 bits (216), Expect(2) = 4e-20
 Identities = 48/92 (52%), Positives = 63/92 (68%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
            SD D+  K S E+SQ D+ S+ET   E SKE
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 230



 Score = 28.9 bits (63), Expect(2) = 4e-20
 Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
           + HSH+D+LV D KS E++++LK ++
Sbjct: 257 KFHSHKDKLVLDPKSKEDDRYLKFRI 282


>ref|NP_001191162.1| osteopontin isoform 4 precursor [Mus musculus].
          Length = 294

 Score =  114 bits (284), Expect = 2e-25
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MR+AVI FCL+G AS+LPVK T+SGSSEEKL S  + D +AT L PDPSQKQ  LAPQN 
Sbjct: 1   MRLAVICFCLFGIASSLPVKVTDSGSSEEKLYS-LHPDPIATWLVPDPSQKQNLLAPQNA 59

Query: 284 ISSEETDDFKQETLPSKSNES 346
           +SSEE DDFKQETLPS SNES
Sbjct: 60  VSSEEKDDFKQETLPSNSNES 80



 Score = 87.8 bits (216), Expect(2) = 4e-20
 Identities = 48/92 (52%), Positives = 63/92 (68%)
 Frame = +2

Query: 548 DPNDGRGDSVVYGLRSKSKKFRRSEAQQLDATEEDLTSHVESEETDGTPKAILVAQRLHV 727
           D  +GRGDS+ YGLRSKS+ F+ S+ Q  DAT+EDLTSH++S E+  +   I VAQ L +
Sbjct: 139 DVPNGRGDSLAYGLRSKSRSFQVSDEQYPDATDEDLTSHMKSGESKESLDVIPVAQLLSM 198

Query: 728 ASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
            SD D+  K S E+SQ D+ S+ET   E SKE
Sbjct: 199 PSDQDNNGKGSHESSQLDEPSLETHRLEHSKE 230



 Score = 28.9 bits (63), Expect(2) = 4e-20
 Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 900 RIHSHEDQLVPDSKS-EEEKHLKLQV 974
           + HSH+D+LV D KS E++++LK ++
Sbjct: 257 KFHSHKDKLVLDPKSKEDDRYLKFRI 282


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,039,970
Number of extensions: 767261
Number of successful extensions: 2733
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 15
Length of query: 335
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 233
Effective length of database: 12,553,887
Effective search space: 2925055671
Effective search space used: 2925055671
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000958
         (1007 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999188.1| osteopontin precursor [Sus scrofa].                  354   e-106

>ref|NP_999188.1| osteopontin precursor [Sus scrofa].
          Length = 303

 Score =  354 bits (909), Expect(2) = e-106
 Identities = 192/263 (73%), Positives = 197/263 (74%)
 Frame = +2

Query: 104 MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 283
           MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT
Sbjct: 1   MRIAVIAFCLWGFASALPVKQTNSGSSEEKLLSNKYTDAVATLLKPDPSQKQTFLAPQNT 60

Query: 284 ISSEETDDFKQETLPSKSNESPEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXX 463
           ISSEETDDFKQETLPSKSNESPEQT                             R     
Sbjct: 61  ISSEETDDFKQETLPSKSNESPEQTDDVDDDDDEDHVDSRDTDSEEADHADDADRSDESH 120

Query: 464 XXXXXXXLXXXXXXXXXXXXXXXXXXXGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 643
                  L                   GDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT
Sbjct: 121 HSDESDELVTDFPTDTPATDVTPAVPTGDPNDGRGDSVVYGLRSKSKKFRRSEAQQLDAT 180

Query: 644 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 823
           EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE
Sbjct: 181 EEDLTSHVESEETDGTPKAILVAQRLHVASDLDSQEKDSQETSQPDDRSVETRSQEQSKE 240

Query: 824 YTIQTYDGRHEHSM*LRVRKIPK 892
           YTI+TYDG +EHS  +  ++ PK
Sbjct: 241 YTIKTYDGSNEHSNVIESQENPK 263



 Score = 49.3 bits (116), Expect(2) = e-106
 Identities = 23/35 (65%), Positives = 29/35 (82%), Gaps = 4/35 (11%)
 Frame = +3

Query: 882 KSQSQPRI----HSHEDQLVPDSKSEEEKHLKLQV 974
           +SQ  P++    HSHED+LVPDSKSEE+KHLKL+V
Sbjct: 257 ESQENPKVSQEFHSHEDKLVPDSKSEEDKHLKLRV 291


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,306,029
Number of extensions: 750926
Number of successful extensions: 2104
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2097
Number of HSP's successfully gapped: 3
Length of query: 335
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,879,129
Effective search space: 2095474444
Effective search space used: 2095474444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000958
         (1007 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr08                                                         658   0.0  

>Sscrofa_Chr08 
||          Length = 148491826

 Score =  658 bits (332), Expect = 0.0
 Identities = 374/384 (97%), Gaps = 3/384 (0%)
 Strand = Plus / Minus

                                                                             
Query: 626       cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 685
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308748 cagcagctggatgccacagaggaagacctcacgtcacatgtggaaagtgaggagacggat 140308689

                                                                             
Query: 686       ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 745
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308688 ggtacccccaaggccatcctcgttgcccagcgcctgcacgtggcttctgacttggacagc 140308629

                                                                             
Query: 746       caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 805
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140308628 caagagaaggacagtcaggagacgagtcagccggatgaccgcagtgtggaaacccgcagc 140308569

                                                                             
Query: 806       caggagcagtccaaagaatacacgatccagacctatgatgggaggcatgagcattcc-at 864
                 ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||| ||
Sbjct: 140308568 caggagcagtccaaagaatacacgatcaagacctatgatgggagcaatgagcattccaat 140308509

                                                                             
Query: 865       gtgattgagagtcaggaaaatcccaaagtcagccaagaa-tccacagccatgaagaccag 923
                 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 140308508 gtgattgagagtcaggaaaatcccaaagtcagccaagaattccacagccatgaagacaag 140308449

                                                                             
Query: 924       ctggtcccagactctaagagcgaagaagaaaaacacctgaaacttcaagttttctcatga 983
                 ||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct: 140308448 ctggtcccagactctaagagcgaagaagacaaacacctgaaacttcgag-tttctcatga 140308390

                                         
Query: 984       attaaagagtgcgtcttctgagat 1007
                 |||| |||||||||||||||||||
Sbjct: 140308389 attagagagtgcgtcttctgagat 140308366



 Score =  363 bits (183), Expect = 1e-97
 Identities = 183/183 (100%)
 Strand = Plus / Minus

                                                                             
Query: 446       cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 505
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309599 cgatccgacgagtctcatcactccgatgaatccgatgagctggtcaccgatttccccacc 140309540

                                                                             
Query: 506       gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 565
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309539 gacaccccagcaaccgacgtcactccggctgtccccacgggagaccccaatgatggccgc 140309480

                                                                             
Query: 566       ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 625
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309479 ggggatagtgtggtctatggactgaggtcaaaatctaagaagttccgcagatccgaagcc 140309420

                    
Query: 626       cag 628
                 |||
Sbjct: 140309419 cag 140309417



 Score =  172 bits (87), Expect = 2e-40
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                             
Query: 5         gcagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactg 64
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140315417 gcagcgagcggaggccagagggcagcactgacagccgcatcagcattgctcccgggactg 140315358

                                            
Query: 65        gactcttcgcggggctgcagaccaagg 91
                 |||||||||||||||||||||||||||
Sbjct: 140315357 gactcttcgcggggctgcagaccaagg 140315331



 Score =  163 bits (82), Expect = 2e-37
 Identities = 82/82 (100%)
 Strand = Plus / Minus

                                                                             
Query: 196       gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 255
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140311218 gctttccaacaaatacacagatgctgtagccacattgctaaagcctgacccatctcagaa 140311159

                                       
Query: 256       gcagactttcctagcgccacag 277
                 ||||||||||||||||||||||
Sbjct: 140311158 gcagactttcctagcgccacag 140311137



 Score =  141 bits (71), Expect = 8e-31
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                             
Query: 89        aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 148
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140314186 aggaaaatcattaccatgagaattgcagtgatagccttctgcctctggggcttcgcctct 140314127

                            
Query: 149       gcccttccagt 159
                 |||||||||||
Sbjct: 140314126 gcccttccagt 140314116



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                              
Query: 275       cagaatactatttcctcggaggaaacggacgacttcaaacaagag 319
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140310853 cagaatactatttcctcggaggaaacggacgacttcaaacaagag 140310809



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 41/41 (100%)
 Strand = Plus / Minus

                                                          
Query: 318       agaccctgccaagcaagtccaacgaaagccctgagcaaaca 358
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140309727 agaccctgccaagcaagtccaacgaaagccctgagcaaaca 140309687



 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                        
Query: 158       gttaaacagactaattctggcagctcggaggaaaagctg 196
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 140314005 gttaaacagactaattctggcagctcggaggaaaagctg 140313967


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,336,776
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 8
Length of query: 1007
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 986
Effective length of database: 2,808,413,156
Effective search space: 2769095371816
Effective search space used: 2769095371816
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)