Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000965
(1189 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015531.1| 40S ribosomal protein S5 [Bos taurus]. 405 e-113
>ref|NP_001015531.1| 40S ribosomal protein S5 [Bos taurus].
Length = 204
Score = 405 bits (1042), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,004,826
Number of extensions: 1363483
Number of successful extensions: 4266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4228
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 292
Effective length of database: 14,240,222
Effective search space: 4158144824
Effective search space used: 4158144824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000965
(1189 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861863.1| PREDICTED: similar to ribosomal protein S5 isof... 405 e-113
Alignment gi|XP_533568.1| PREDICTED: similar to ribosomal protein S5 isof... 405 e-113
Alignment gi|XP_861807.1| PREDICTED: similar to ribosomal protein S5 isof... 365 e-101
Alignment gi|XP_861833.1| PREDICTED: similar to ribosomal protein S5 isof... 300 2e-81
Alignment gi|XP_861778.1| PREDICTED: similar to ribosomal protein S5 isof... 192 4e-49
>ref|XP_861863.1| PREDICTED: similar to ribosomal protein S5 isoform 5 [Canis
familiaris].
Length = 204
Score = 405 bits (1042), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204
>ref|XP_533568.1| PREDICTED: similar to ribosomal protein S5 isoform 1 [Canis
familiaris].
Length = 204
Score = 405 bits (1042), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204
>ref|XP_861807.1| PREDICTED: similar to ribosomal protein S5 isoform 3 [Canis
familiaris].
Length = 189
Score = 365 bits (936), Expect = e-101
Identities = 188/204 (92%), Positives = 189/204 (92%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN-- 118
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
+RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 119 -------------MRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 165
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 166 AKGSSNSYAIKKKDELERVAKSNR 189
>ref|XP_861833.1| PREDICTED: similar to ribosomal protein S5 isoform 4 [Canis
familiaris].
Length = 165
Score = 300 bits (767), Expect = 2e-81
Identities = 149/149 (100%), Positives = 149/149 (100%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQ 896
PREDSTRIGRAGTVRRQAVDVSPLRRVNQ
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQ 149
>ref|XP_861778.1| PREDICTED: similar to ribosomal protein S5 isoform 2 [Canis
familiaris].
Length = 134
Score = 192 bits (489), Expect = 4e-49
Identities = 98/99 (98%), Positives = 99/99 (100%)
Frame = +3
Query: 765 ENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 944
+NPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN
Sbjct: 36 QNPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 95
Query: 945 IKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 1061
IKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 96 IKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 134
Score = 79.0 bits (193), Expect = 8e-15
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAV 572
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQ+ + V
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQNPLQV 41
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,421,775
Number of extensions: 1013933
Number of successful extensions: 4156
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4112
Number of HSP's successfully gapped: 6
Length of query: 396
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 291
Effective length of database: 15,374,224
Effective search space: 4473899184
Effective search space used: 4473899184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000965
(1189 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001000.2| 40S ribosomal protein S5 [Homo sapiens]. 405 e-113
>ref|NP_001000.2| 40S ribosomal protein S5 [Homo sapiens].
Length = 204
Score = 405 bits (1042), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,564,412
Number of extensions: 954692
Number of successful extensions: 3854
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3828
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 291
Effective length of database: 14,835,944
Effective search space: 4317259704
Effective search space used: 4317259704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000965
(1189 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033121.2| 40S ribosomal protein S5 [Mus musculus]. 402 e-112
>ref|NP_033121.2| 40S ribosomal protein S5 [Mus musculus].
Length = 204
Score = 402 bits (1033), Expect = e-112
Identities = 202/204 (99%), Positives = 202/204 (99%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWE A PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWEAATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,539,869
Number of extensions: 806964
Number of successful extensions: 3040
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2994
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 293
Effective length of database: 12,523,851
Effective search space: 3669488343
Effective search space used: 3669488343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000965
(1189 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128182.1| PREDICTED: 40S ribosomal protein S5-like iso... 405 e-113
Alignment gi|XP_003128181.1| PREDICTED: 40S ribosomal protein S5-like iso... 405 e-113
>ref|XP_003128182.1| PREDICTED: 40S ribosomal protein S5-like isoform 2 [Sus scrofa].
Length = 204
Score = 405 bits (1042), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204
>ref|XP_003128181.1| PREDICTED: 40S ribosomal protein S5-like isoform 1 [Sus scrofa].
Length = 204
Score = 405 bits (1042), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60
Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 990 AKGSSNSYAIKKKDELERVAKSNR 1061
AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 AKGSSNSYAIKKKDELERVAKSNR 204
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,503,362
Number of extensions: 1495254
Number of successful extensions: 2769
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2717
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,829,335
Effective search space: 2604653825
Effective search space used: 2604653825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000965
(1189 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 422 e-115
gb|JH118426.1| Sus scrofa unplaced genomic scaffold ChrUScaf264 90 3e-15
Sscrofa_Chr13 90 3e-15
>Sscrofa_Chr06
|| Length = 157765593
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 555 caggattacatcgcggtgaaggaaaagtatgccaagtacctgccccacagcgcagggcgc 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690306 caggattacatcgcggtgaaggaaaagtatgccaagtacctgccccacagcgcagggcgc 57690365
Query: 615 tatgccgccaagcgcttccgcaaggcccagtgccccattgtggagcgcctcaccaactcc 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690366 tatgccgccaagcgcttccgcaaggcccagtgccccattgtggagcgcctcaccaactcc 57690425
Query: 675 atgatgatgcacggccgaaacaacggcaagaagctcatgaccgtgcgcatcgtcaagcat 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690426 atgatgatgcacggccgaaacaacggcaagaagctcatgaccgtgcgcatcgtcaagcat 57690485
Query: 735 gccttcgagatcatccacctgctcacgggcgag 767
|||||||||||||||||||||||||||||||||
Sbjct: 57690486 gccttcgagatcatccacctgctcacgggcgag 57690518
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 766 agaatccgctgcaggtcctggtgaacgccatcatcaacagcggcccccgggaggactcaa 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690639 agaatccgctgcaggtcctggtgaacgccatcatcaacagcggcccccgggaggactcaa 57690698
Query: 826 cccgcatcggccgagccggaaccgtgaggcggcaggcggtggacgtgtccccactgcgcc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690699 cccgcatcggccgagccggaaccgtgaggcggcaggcggtggacgtgtccccactgcgcc 57690758
Query: 886 gtgtgaatcagg 897
||||||||||||
Sbjct: 57690759 gtgtgaatcagg 57690770
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 446 taggatgacggagtgggagacagctgcacccgcagtggcggagaccccagacatcaagct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57687205 taggatgacggagtgggagacagctgcacccgcagtggcggagaccccagacatcaagct 57687264
Query: 506 ctttgggaagtggagcaccgacgatgtgcagattaatgacatatccttgcagg 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57687265 ctttgggaagtggagcaccgacgatgtgcagattaatgacatatccttgcagg 57687317
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 994 agggctcctccaactcctacgccatcaagaagaaggatgagctggaacgtgtggccaaat 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57692090 agggctcctccaactcctacgccatcaagaagaaggatgagctggaacgtgtggccaaat 57692149
Query: 1054 ccaaccgttgatttcccagctgcagccccaataaaactgtttgccattta 1103
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57692150 ccaaccgttgatttcccagctgcagccccaataaaactgtttgccattta 57692199
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 895 aggccatctggctgctgtgcacgggtgcccgagaggctgctttccggaacatcaagacca 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57691916 aggccatctggctgctgtgcacgggtgcccgagaggctgctttccggaacatcaagacca 57691975
Query: 955 ttgccgagtgcctggcagatgagctcatcaatgccgccaagg 996
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57691976 ttgccgagtgcctggcagatgagctcatcaatgccgccaagg 57692017
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 378 ctcttcctgtctgtgccagggcggcgcgtggtccacgccaagcggtagagacgcctcagc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57686424 ctcttcctgtctgtgccagggcggcgcgtggtccacgccaagcggtagagacgcctcagc 57686483
Query: 438 cgcggtcttagg 449
||||||||||||
Sbjct: 57686484 cgcggtcttagg 57686495
>gb|JH118426.1| Sus scrofa unplaced genomic scaffold ChrUScaf264
Length = 333342
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 1141 cggtcatcgatgagtgcacgcgcatcgtgtcgcaaaacgtgggcgatgt 1189
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 160134 cggtcatcgatgagtgcacgcgcatcgtgtcgcagaacgtgggcgatgt 160086
>Sscrofa_Chr13
|| Length = 218635234
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1141 cggtcatcgatgagtgcacgcgcatcgtgtcgcaaaacgtgggcgatgt 1189
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 155134806 cggtcatcgatgagtgcacgcgcatcgtgtcgcagaacgtgggcgatgt 155134854
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,443,362
Number of extensions: 65
Number of successful extensions: 65
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 1189
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1168
Effective length of database: 2,808,413,156
Effective search space: 3280226566208
Effective search space used: 3280226566208
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)