Animal-Genome cDNA 20110601C-000965


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000965
         (1189 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001015531.1| 40S ribosomal protein S5 [Bos taurus].            405   e-113

>ref|NP_001015531.1| 40S ribosomal protein S5 [Bos taurus].
          Length = 204

 Score =  405 bits (1042), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
            PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181  AKGSSNSYAIKKKDELERVAKSNR 204


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,004,826
Number of extensions: 1363483
Number of successful extensions: 4266
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4228
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 292
Effective length of database: 14,240,222
Effective search space: 4158144824
Effective search space used: 4158144824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000965
         (1189 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_861863.1| PREDICTED: similar to ribosomal protein S5 isof...   405   e-113
Alignment   gi|XP_533568.1| PREDICTED: similar to ribosomal protein S5 isof...   405   e-113
Alignment   gi|XP_861807.1| PREDICTED: similar to ribosomal protein S5 isof...   365   e-101
Alignment   gi|XP_861833.1| PREDICTED: similar to ribosomal protein S5 isof...   300   2e-81
Alignment   gi|XP_861778.1| PREDICTED: similar to ribosomal protein S5 isof...   192   4e-49

>ref|XP_861863.1| PREDICTED: similar to ribosomal protein S5 isoform 5 [Canis
            familiaris].
          Length = 204

 Score =  405 bits (1042), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
            PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181  AKGSSNSYAIKKKDELERVAKSNR 204


>ref|XP_533568.1| PREDICTED: similar to ribosomal protein S5 isoform 1 [Canis
            familiaris].
          Length = 204

 Score =  405 bits (1042), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
            PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181  AKGSSNSYAIKKKDELERVAKSNR 204


>ref|XP_861807.1| PREDICTED: similar to ribosomal protein S5 isoform 3 [Canis
            familiaris].
          Length = 189

 Score =  365 bits (936), Expect = e-101
 Identities = 188/204 (92%), Positives = 189/204 (92%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN  
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN-- 118

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
                         +RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 119  -------------MRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 165

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 166  AKGSSNSYAIKKKDELERVAKSNR 189


>ref|XP_861833.1| PREDICTED: similar to ribosomal protein S5 isoform 4 [Canis
           familiaris].
          Length = 165

 Score =  300 bits (767), Expect = 2e-81
 Identities = 149/149 (100%), Positives = 149/149 (100%)
 Frame = +3

Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
           MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1   MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
           FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810 PREDSTRIGRAGTVRRQAVDVSPLRRVNQ 896
           PREDSTRIGRAGTVRRQAVDVSPLRRVNQ
Sbjct: 121 PREDSTRIGRAGTVRRQAVDVSPLRRVNQ 149


>ref|XP_861778.1| PREDICTED: similar to ribosomal protein S5 isoform 2 [Canis
            familiaris].
          Length = 134

 Score =  192 bits (489), Expect = 4e-49
 Identities = 98/99 (98%), Positives = 99/99 (100%)
 Frame = +3

Query: 765  ENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 944
            +NPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN
Sbjct: 36   QNPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRN 95

Query: 945  IKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 1061
            IKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 96   IKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 134



 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = +3

Query: 450 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAV 572
           MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQ+ + V
Sbjct: 1   MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQNPLQV 41


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,421,775
Number of extensions: 1013933
Number of successful extensions: 4156
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4112
Number of HSP's successfully gapped: 6
Length of query: 396
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 291
Effective length of database: 15,374,224
Effective search space: 4473899184
Effective search space used: 4473899184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000965
         (1189 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001000.2| 40S ribosomal protein S5 [Homo sapiens].             405   e-113

>ref|NP_001000.2| 40S ribosomal protein S5 [Homo sapiens].
          Length = 204

 Score =  405 bits (1042), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
            PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181  AKGSSNSYAIKKKDELERVAKSNR 204


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,564,412
Number of extensions: 954692
Number of successful extensions: 3854
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3828
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 291
Effective length of database: 14,835,944
Effective search space: 4317259704
Effective search space used: 4317259704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000965
         (1189 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033121.2| 40S ribosomal protein S5 [Mus musculus].             402   e-112

>ref|NP_033121.2| 40S ribosomal protein S5 [Mus musculus].
          Length = 204

 Score =  402 bits (1033), Expect = e-112
 Identities = 202/204 (99%), Positives = 202/204 (99%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWE A PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWEAATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
            PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181  AKGSSNSYAIKKKDELERVAKSNR 204


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,539,869
Number of extensions: 806964
Number of successful extensions: 3040
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2994
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 293
Effective length of database: 12,523,851
Effective search space: 3669488343
Effective search space used: 3669488343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000965
         (1189 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128182.1| PREDICTED: 40S ribosomal protein S5-like iso...   405   e-113
Alignment   gi|XP_003128181.1| PREDICTED: 40S ribosomal protein S5-like iso...   405   e-113

>ref|XP_003128182.1| PREDICTED: 40S ribosomal protein S5-like isoform 2 [Sus scrofa].
          Length = 204

 Score =  405 bits (1042), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
            PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181  AKGSSNSYAIKKKDELERVAKSNR 204


>ref|XP_003128181.1| PREDICTED: 40S ribosomal protein S5-like isoform 1 [Sus scrofa].
          Length = 204

 Score =  405 bits (1042), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)
 Frame = +3

Query: 450  MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 629
            MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR
Sbjct: 1    MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 60

Query: 630  FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 809
            FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG
Sbjct: 61   FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120

Query: 810  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 989
            PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA
Sbjct: 121  PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180

Query: 990  AKGSSNSYAIKKKDELERVAKSNR 1061
            AKGSSNSYAIKKKDELERVAKSNR
Sbjct: 181  AKGSSNSYAIKKKDELERVAKSNR 204


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,503,362
Number of extensions: 1495254
Number of successful extensions: 2769
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2717
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,829,335
Effective search space: 2604653825
Effective search space used: 2604653825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000965
         (1189 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         422   e-115
gb|JH118426.1| Sus scrofa unplaced genomic scaffold ChrUScaf264        90   3e-15
Sscrofa_Chr13                                                          90   3e-15

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  422 bits (213), Expect = e-115
 Identities = 213/213 (100%)
 Strand = Plus / Plus

                                                                            
Query: 555      caggattacatcgcggtgaaggaaaagtatgccaagtacctgccccacagcgcagggcgc 614
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690306 caggattacatcgcggtgaaggaaaagtatgccaagtacctgccccacagcgcagggcgc 57690365

                                                                            
Query: 615      tatgccgccaagcgcttccgcaaggcccagtgccccattgtggagcgcctcaccaactcc 674
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690366 tatgccgccaagcgcttccgcaaggcccagtgccccattgtggagcgcctcaccaactcc 57690425

                                                                            
Query: 675      atgatgatgcacggccgaaacaacggcaagaagctcatgaccgtgcgcatcgtcaagcat 734
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690426 atgatgatgcacggccgaaacaacggcaagaagctcatgaccgtgcgcatcgtcaagcat 57690485

                                                 
Query: 735      gccttcgagatcatccacctgctcacgggcgag 767
                |||||||||||||||||||||||||||||||||
Sbjct: 57690486 gccttcgagatcatccacctgctcacgggcgag 57690518



 Score =  262 bits (132), Expect = 4e-67
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                            
Query: 766      agaatccgctgcaggtcctggtgaacgccatcatcaacagcggcccccgggaggactcaa 825
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690639 agaatccgctgcaggtcctggtgaacgccatcatcaacagcggcccccgggaggactcaa 57690698

                                                                            
Query: 826      cccgcatcggccgagccggaaccgtgaggcggcaggcggtggacgtgtccccactgcgcc 885
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57690699 cccgcatcggccgagccggaaccgtgaggcggcaggcggtggacgtgtccccactgcgcc 57690758

                            
Query: 886      gtgtgaatcagg 897
                ||||||||||||
Sbjct: 57690759 gtgtgaatcagg 57690770



 Score =  224 bits (113), Expect = 9e-56
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                            
Query: 446      taggatgacggagtgggagacagctgcacccgcagtggcggagaccccagacatcaagct 505
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57687205 taggatgacggagtgggagacagctgcacccgcagtggcggagaccccagacatcaagct 57687264

                                                                     
Query: 506      ctttgggaagtggagcaccgacgatgtgcagattaatgacatatccttgcagg 558
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57687265 ctttgggaagtggagcaccgacgatgtgcagattaatgacatatccttgcagg 57687317



 Score =  218 bits (110), Expect = 5e-54
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                            
Query: 994      agggctcctccaactcctacgccatcaagaagaaggatgagctggaacgtgtggccaaat 1053
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57692090 agggctcctccaactcctacgccatcaagaagaaggatgagctggaacgtgtggccaaat 57692149

                                                                  
Query: 1054     ccaaccgttgatttcccagctgcagccccaataaaactgtttgccattta 1103
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57692150 ccaaccgttgatttcccagctgcagccccaataaaactgtttgccattta 57692199



 Score =  202 bits (102), Expect = 3e-49
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                            
Query: 895      aggccatctggctgctgtgcacgggtgcccgagaggctgctttccggaacatcaagacca 954
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57691916 aggccatctggctgctgtgcacgggtgcccgagaggctgctttccggaacatcaagacca 57691975

                                                          
Query: 955      ttgccgagtgcctggcagatgagctcatcaatgccgccaagg 996
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57691976 ttgccgagtgcctggcagatgagctcatcaatgccgccaagg 57692017



 Score =  143 bits (72), Expect = 3e-31
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                            
Query: 378      ctcttcctgtctgtgccagggcggcgcgtggtccacgccaagcggtagagacgcctcagc 437
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57686424 ctcttcctgtctgtgccagggcggcgcgtggtccacgccaagcggtagagacgcctcagc 57686483

                            
Query: 438      cgcggtcttagg 449
                ||||||||||||
Sbjct: 57686484 cgcggtcttagg 57686495


>gb|JH118426.1| Sus scrofa unplaced genomic scaffold ChrUScaf264
          Length = 333342

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 48/49 (97%)
 Strand = Plus / Minus

                                                               
Query: 1141   cggtcatcgatgagtgcacgcgcatcgtgtcgcaaaacgtgggcgatgt 1189
              |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 160134 cggtcatcgatgagtgcacgcgcatcgtgtcgcagaacgtgggcgatgt 160086


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                                  
Query: 1141      cggtcatcgatgagtgcacgcgcatcgtgtcgcaaaacgtgggcgatgt 1189
                 |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 155134806 cggtcatcgatgagtgcacgcgcatcgtgtcgcagaacgtgggcgatgt 155134854


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,443,362
Number of extensions: 65
Number of successful extensions: 65
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 1189
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1168
Effective length of database: 2,808,413,156
Effective search space: 3280226566208
Effective search space used: 3280226566208
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)