Animal-Genome cDNA 20110601C-000997


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000997
         (1230 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029620.1| integrin beta-1-binding protein 1 [Bos tauru...   307   1e-83

>ref|NP_001029620.1| integrin beta-1-binding protein 1 [Bos taurus].
          Length = 200

 Score =  307 bits (786), Expect = 1e-83
 Identities = 155/171 (90%), Positives = 159/171 (92%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD   
Sbjct: 90  NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                    TTDA+N+EYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 SGKSLLALKTTDANNQEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,046,481
Number of extensions: 1199032
Number of successful extensions: 4117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4077
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000997
         (1230 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding p...   306   3e-83

>ref|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding protein 1 (Integrin
           cytoplasmic domain-associated protein 1) (ICAP-1) [Canis
           familiaris].
          Length = 200

 Score =  306 bits (784), Expect = 3e-83
 Identities = 155/171 (90%), Positives = 158/171 (92%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNS+TCAEFRIKYVGAIEKLK SEGKSLEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSETCAEFRIKYVGAIEKLKFSEGKSLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD   
Sbjct: 90  NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                    TTDASNEEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,442,155
Number of extensions: 1173258
Number of successful extensions: 4252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4227
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000997
         (1230 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Ho...   305   6e-83
Alignment   gi|NP_071729.1| integrin beta-1-binding protein 1 isoform 2 [Ho...   207   1e-53

>ref|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Homo sapiens].
          Length = 200

 Score =  305 bits (781), Expect = 6e-83
 Identities = 155/171 (90%), Positives = 157/171 (91%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGK LEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVP EEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD   
Sbjct: 90  NYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                    TTDASNEEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200


>ref|NP_071729.1| integrin beta-1-binding protein 1 isoform 2 [Homo sapiens].
          Length = 150

 Score =  207 bits (528), Expect = 1e-53
 Identities = 118/171 (69%), Positives = 119/171 (69%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGK LEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVP EEEFIMGVSKYGIKVSTSDQY                      
Sbjct: 90  NYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQY---------------------- 127

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                                       EQAQAICKVL+TAFDSVLTSEKP
Sbjct: 128 ----------------------------EQAQAICKVLSTAFDSVLTSEKP 150


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,642,523
Number of extensions: 1147309
Number of successful extensions: 4098
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4067
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000997
         (1230 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus].    291   9e-79

>ref|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus].
          Length = 200

 Score =  291 bits (744), Expect = 9e-79
 Identities = 147/170 (86%), Positives = 155/170 (91%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSN+N DTCAEFRIKYVGAIEKL +SEGKSLEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNSNLDTCAEFRIKYVGAIEKLAVSEGKSLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVPLEEEFI+GVSKYGIKVST+DQ+ VLHRHALYLIIRMVCYDD   
Sbjct: 90  NYIDVAQQDGKLPFVPLEEEFILGVSKYGIKVSTTDQHGVLHRHALYLIIRMVCYDDGLG 149

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEK 720
                    TTDASNEEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTS+K
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSDK 199


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,075,695
Number of extensions: 970895
Number of successful extensions: 3186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3165
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000997
         (1230 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1...   308   4e-84
Alignment   gi|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1...   308   4e-84
Alignment   gi|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1...   275   5e-74
Alignment   gi|XP_003354977.1| PREDICTED: integrin beta-1-binding protein 1...   213   2e-55

>ref|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
          Length = 200

 Score =  308 bits (789), Expect = 4e-84
 Identities = 157/171 (91%), Positives = 159/171 (92%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII+MVCYDD   
Sbjct: 90  NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIQMVCYDDGLG 149

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                    TTDAS+EEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 200


>ref|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
          Length = 200

 Score =  308 bits (789), Expect = 4e-84
 Identities = 157/171 (91%), Positives = 159/171 (92%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII+MVCYDD   
Sbjct: 90  NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIQMVCYDDGLG 149

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                    TTDAS+EEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 200


>ref|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
          Length = 187

 Score =  275 bits (702), Expect = 5e-74
 Identities = 145/171 (84%), Positives = 146/171 (85%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY             MVCYDD   
Sbjct: 90  NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY-------------MVCYDDGLG 136

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                    TTDAS+EEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 137 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 187


>ref|XP_003354977.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
          Length = 150

 Score =  213 bits (542), Expect = 2e-55
 Identities = 121/171 (70%), Positives = 121/171 (70%)
 Frame = +1

Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
           LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30  LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89

Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
           NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY                      
Sbjct: 90  NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY---------------------- 127

Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
                                       EQAQAICKVLATAFDSVLTSEKP
Sbjct: 128 ----------------------------EQAQAICKVLATAFDSVLTSEKP 150


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,194,940
Number of extensions: 844031
Number of successful extensions: 2738
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 5
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000997
         (1230 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                         908   0.0  

>Sscrofa_Chr03 
||          Length = 144787322

 Score =  908 bits (458), Expect = 0.0
 Identities = 505/519 (97%), Gaps = 3/519 (0%)
 Strand = Plus / Plus

                                                                             
Query: 654       ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 713
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135294981 ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 135295040

                                                                             
Query: 714       tgagaaaccctgacttctgcaacccagggacatcaccgtcacacgcaagttccgcttttt 773
                 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 135295041 tgagaaaccctgacttctgcaacccagggacgtcaccgtcacacgcaagttccgcttttt 135295100

                                                                             
Query: 774       ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 833
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295101 ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 135295160

                                                                             
Query: 834       ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 893
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295161 ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 135295220

                                                                             
Query: 894       ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactgnnnnnnngaaa 953
                 |||||||||||||||||||||||||||||||||||||||||||||||||       ||||
Sbjct: 135295221 ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactg-aaaaaagaaa 135295279

                                                                             
Query: 954       cgtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagcgc 1013
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 135295280 cgtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagtgc 135295339

                                                                             
Query: 1014      acccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctgg 1073
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295340 acccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctgg 135295399

                                                                             
Query: 1074      cccgtggtgcgctctggccgggggacccggtcatgctggtctgaaacagtgacaccgccn 1133
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 135295400 cccgtggtgcgctctggccgggggacccggtcatgctggtctgaaacagtgacaccgcc- 135295458

                                                        
Query: 1134      nactc-agacacagccagccttttgaagcgtgttgtcgt 1171
                  |||| |||||||||||||||||  ||||||||||||||
Sbjct: 135295459 aactcaagacacagccagcctttgaaagcgtgttgtcgt 135295497



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                             
Query: 273       aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 332
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292875 aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 135292934

                                                                             
Query: 333       catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 392
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292935 catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 135292994

                                    
Query: 393       ttatatagatgttgcccag 411
                 |||||||||||||||||||
Sbjct: 135292995 ttatatagatgttgcccag 135293013



 Score =  254 bits (128), Expect = 1e-64
 Identities = 143/148 (96%)
 Strand = Plus / Plus

                                                                             
Query: 508       gttttgcacaggcacgcgctgtatttaatcatccggatggtgtgctatgacgacggcctg 567
                 ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 135294441 gttttgcacaggcacgcgctgtatttaattatccagatggtgtgctatgacgacggcctg 135294500

                                                                             
Query: 568       ggggcgggaaaaagcttactggctctgaagaccacagatgccagcaacgaagaatacagc 627
                 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 135294501 ggggcggggaaaagcttactggctctgaagaccacagatgccagccacgaagaatacagc 135294560

                                             
Query: 628       ctgtgggtttatcagtgcagcagcctgg 655
                 ||||||||||| ||||||||||||||||
Sbjct: 135294561 ctgtgggtttaccagtgcagcagcctgg 135294588



 Score =  210 bits (106), Expect = 1e-51
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                             
Query: 90        aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 149
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287194 aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 135287253

                                                               
Query: 150       cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 195
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287254 cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 135287299



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                             
Query: 410       agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 469
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135293523 agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 135293582

                                                     
Query: 470       agtatgggataaaagtatccacatcggatcagtatg 505
                 ||||||||||||||||||||||||||||||||||||
Sbjct: 135293583 agtatgggataaaagtatccacatcggatcagtatg 135293618



 Score =  174 bits (88), Expect = 7e-41
 Identities = 91/92 (98%)
 Strand = Plus / Plus

                                                                             
Query: 1         gagccggcgctggaatcggaacggaggtggctgctgtggcgccggctcccccgggagtgg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135174283 gagccggcgctggaatcggaacggaggtggctgctgtggcgccggctcccccgggagtgg 135174342

                                                 
Query: 61        gtgtctgaccccgaccgcgggcggcggtgagg 92
                 |||||||||||||||||| |||||||||||||
Sbjct: 135174343 gtgtctgaccccgaccgcaggcggcggtgagg 135174374



 Score =  163 bits (82), Expect = 3e-37
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                             
Query: 194       agtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgata 253
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135290997 agtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgata 135291056

                                       
Query: 254       cagattctaccaagagctcagg 275
                 ||||||||||||||||||||||
Sbjct: 135291057 cagattctaccaagagctcagg 135291078


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,122,971
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 8
Length of query: 1230
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1209
Effective length of database: 2,808,413,156
Effective search space: 3395371505604
Effective search space used: 3395371505604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)