Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000997
(1230 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029620.1| integrin beta-1-binding protein 1 [Bos tauru... 307 1e-83
>ref|NP_001029620.1| integrin beta-1-binding protein 1 [Bos taurus].
Length = 200
Score = 307 bits (786), Expect = 1e-83
Identities = 155/171 (90%), Positives = 159/171 (92%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
TTDA+N+EYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 SGKSLLALKTTDANNQEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,046,481
Number of extensions: 1199032
Number of successful extensions: 4117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4077
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000997
(1230 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding p... 306 3e-83
>ref|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding protein 1 (Integrin
cytoplasmic domain-associated protein 1) (ICAP-1) [Canis
familiaris].
Length = 200
Score = 306 bits (784), Expect = 3e-83
Identities = 155/171 (90%), Positives = 158/171 (92%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNS+TCAEFRIKYVGAIEKLK SEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSETCAEFRIKYVGAIEKLKFSEGKSLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
TTDASNEEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,442,155
Number of extensions: 1173258
Number of successful extensions: 4252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4227
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000997
(1230 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Ho... 305 6e-83
Alignment gi|NP_071729.1| integrin beta-1-binding protein 1 isoform 2 [Ho... 207 1e-53
>ref|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Homo sapiens].
Length = 200
Score = 305 bits (781), Expect = 6e-83
Identities = 155/171 (90%), Positives = 157/171 (91%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGK LEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVP EEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDGLG 149
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
TTDASNEEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSEKP 200
>ref|NP_071729.1| integrin beta-1-binding protein 1 isoform 2 [Homo sapiens].
Length = 150
Score = 207 bits (528), Expect = 1e-53
Identities = 118/171 (69%), Positives = 119/171 (69%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGK LEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKGLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVP EEEFIMGVSKYGIKVSTSDQY
Sbjct: 90 NYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQY---------------------- 127
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
EQAQAICKVL+TAFDSVLTSEKP
Sbjct: 128 ----------------------------EQAQAICKVLSTAFDSVLTSEKP 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,642,523
Number of extensions: 1147309
Number of successful extensions: 4098
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4067
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000997
(1230 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus]. 291 9e-79
>ref|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus].
Length = 200
Score = 291 bits (744), Expect = 9e-79
Identities = 147/170 (86%), Positives = 155/170 (91%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSN+N DTCAEFRIKYVGAIEKL +SEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNSNLDTCAEFRIKYVGAIEKLAVSEGKSLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVPLEEEFI+GVSKYGIKVST+DQ+ VLHRHALYLIIRMVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFILGVSKYGIKVSTTDQHGVLHRHALYLIIRMVCYDDGLG 149
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEK 720
TTDASNEEYSLWVYQC+SLEQAQAICKVL+TAFDSVLTS+K
Sbjct: 150 AGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVLTSDK 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,075,695
Number of extensions: 970895
Number of successful extensions: 3186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3165
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000997
(1230 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1... 308 4e-84
Alignment gi|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1... 308 4e-84
Alignment gi|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1... 275 5e-74
Alignment gi|XP_003354977.1| PREDICTED: integrin beta-1-binding protein 1... 213 2e-55
>ref|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 200
Score = 308 bits (789), Expect = 4e-84
Identities = 157/171 (91%), Positives = 159/171 (92%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII+MVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIQMVCYDDGLG 149
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
TTDAS+EEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 200
>ref|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 200
Score = 308 bits (789), Expect = 4e-84
Identities = 157/171 (91%), Positives = 159/171 (92%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLII+MVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIQMVCYDDGLG 149
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
TTDAS+EEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 150 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 200
>ref|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 187
Score = 275 bits (702), Expect = 5e-74
Identities = 145/171 (84%), Positives = 146/171 (85%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY MVCYDD
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY-------------MVCYDDGLG 136
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
TTDAS+EEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP
Sbjct: 137 AGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 187
>ref|XP_003354977.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 150
Score = 213 bits (542), Expect = 2e-55
Identities = 121/171 (70%), Positives = 121/171 (70%)
Frame = +1
Query: 211 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 390
LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI
Sbjct: 30 LGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGKSLEGPLDLI 89
Query: 391 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHALYLIIRMVCYDDXXX 570
NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY
Sbjct: 90 NYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY---------------------- 127
Query: 571 XXXXXXXXXTTDASNEEYSLWVYQCSSLEQAQAICKVLATAFDSVLTSEKP 723
EQAQAICKVLATAFDSVLTSEKP
Sbjct: 128 ----------------------------EQAQAICKVLATAFDSVLTSEKP 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,194,940
Number of extensions: 844031
Number of successful extensions: 2738
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 5
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000997
(1230 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 908 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 908 bits (458), Expect = 0.0
Identities = 505/519 (97%), Gaps = 3/519 (0%)
Strand = Plus / Plus
Query: 654 ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135294981 ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 135295040
Query: 714 tgagaaaccctgacttctgcaacccagggacatcaccgtcacacgcaagttccgcttttt 773
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 135295041 tgagaaaccctgacttctgcaacccagggacgtcaccgtcacacgcaagttccgcttttt 135295100
Query: 774 ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295101 ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 135295160
Query: 834 ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295161 ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 135295220
Query: 894 ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactgnnnnnnngaaa 953
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 135295221 ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactg-aaaaaagaaa 135295279
Query: 954 cgtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagcgc 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 135295280 cgtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagtgc 135295339
Query: 1014 acccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctgg 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295340 acccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctgg 135295399
Query: 1074 cccgtggtgcgctctggccgggggacccggtcatgctggtctgaaacagtgacaccgccn 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295400 cccgtggtgcgctctggccgggggacccggtcatgctggtctgaaacagtgacaccgcc- 135295458
Query: 1134 nactc-agacacagccagccttttgaagcgtgttgtcgt 1171
|||| ||||||||||||||||| ||||||||||||||
Sbjct: 135295459 aactcaagacacagccagcctttgaaagcgtgttgtcgt 135295497
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 273 aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292875 aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 135292934
Query: 333 catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292935 catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 135292994
Query: 393 ttatatagatgttgcccag 411
|||||||||||||||||||
Sbjct: 135292995 ttatatagatgttgcccag 135293013
Score = 254 bits (128), Expect = 1e-64
Identities = 143/148 (96%)
Strand = Plus / Plus
Query: 508 gttttgcacaggcacgcgctgtatttaatcatccggatggtgtgctatgacgacggcctg 567
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 135294441 gttttgcacaggcacgcgctgtatttaattatccagatggtgtgctatgacgacggcctg 135294500
Query: 568 ggggcgggaaaaagcttactggctctgaagaccacagatgccagcaacgaagaatacagc 627
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 135294501 ggggcggggaaaagcttactggctctgaagaccacagatgccagccacgaagaatacagc 135294560
Query: 628 ctgtgggtttatcagtgcagcagcctgg 655
||||||||||| ||||||||||||||||
Sbjct: 135294561 ctgtgggtttaccagtgcagcagcctgg 135294588
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 90 aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287194 aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 135287253
Query: 150 cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 195
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287254 cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 135287299
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 410 agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135293523 agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 135293582
Query: 470 agtatgggataaaagtatccacatcggatcagtatg 505
||||||||||||||||||||||||||||||||||||
Sbjct: 135293583 agtatgggataaaagtatccacatcggatcagtatg 135293618
Score = 174 bits (88), Expect = 7e-41
Identities = 91/92 (98%)
Strand = Plus / Plus
Query: 1 gagccggcgctggaatcggaacggaggtggctgctgtggcgccggctcccccgggagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135174283 gagccggcgctggaatcggaacggaggtggctgctgtggcgccggctcccccgggagtgg 135174342
Query: 61 gtgtctgaccccgaccgcgggcggcggtgagg 92
|||||||||||||||||| |||||||||||||
Sbjct: 135174343 gtgtctgaccccgaccgcaggcggcggtgagg 135174374
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 194 agtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgata 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135290997 agtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgata 135291056
Query: 254 cagattctaccaagagctcagg 275
||||||||||||||||||||||
Sbjct: 135291057 cagattctaccaagagctcagg 135291078
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,122,971
Number of extensions: 153
Number of successful extensions: 153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 8
Length of query: 1230
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1209
Effective length of database: 2,808,413,156
Effective search space: 3395371505604
Effective search space used: 3395371505604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)