Animal-Genome cDNA 20110601C-001080


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001080
         (1036 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069610.1| E3 ubiquitin-protein ligase RNF13 [Bos tauru...   530   e-150
Alignment   gi|NP_001069873.2| ring finger protein 167 [Bos taurus].             289   6e-79
Alignment   gi|XP_002696473.1| PREDICTED: ring finger protein 167-like [Bos...   260   2e-69
Alignment   gi|XP_594949.2| PREDICTED: ring finger protein 167 [Bos taurus].     260   2e-69
Alignment   gi|XP_002688963.1| PREDICTED: zinc and ring finger 4 [Bos tauru...   183   2e-46
Alignment   gi|XP_595563.4| PREDICTED: zinc and ring finger 4 [Bos taurus].      183   2e-46
Alignment   gi|NP_001093178.1| goliath homolog [Bos taurus].                      81   1e-15
Alignment   gi|XP_002691197.1| PREDICTED: ring finger protein 133-like [Bos...    70   3e-12
Alignment   gi|XP_582694.4| PREDICTED: ring finger protein 133-like [Bos ta...    70   3e-12
Alignment   gi|XP_871924.4| PREDICTED: ring finger protein 150 [Bos taurus].      68   7e-12

>ref|NP_001069610.1| E3 ubiquitin-protein ligase RNF13 [Bos taurus].
          Length = 380

 Score =  530 bits (1364), Expect = e-150
 Identities = 262/289 (90%), Positives = 268/289 (92%)
 Frame = +2

Query: 170  MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
            MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1    MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
            AEGLKGFLINSKPENACEPIVPPP++DNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI
Sbjct: 61   AEGLKGFLINSKPENACEPIVPPPVRDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 120

Query: 530  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
            VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180

Query: 710  EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
            EYYLIPF             FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181  EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
            AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK      +K+  SQ
Sbjct: 241  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289


>ref|NP_001069873.2| ring finger protein 167 [Bos taurus].
          Length = 349

 Score =  289 bits (739), Expect(2) = 6e-79
 Identities = 138/246 (56%), Positives = 175/246 (71%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           P    + A +  NAS  F DLPA FG  L  EGL+GFL+ + P+NAC PI PPP    + 
Sbjct: 21  PSRGLIRAISDHNASMDFADLPALFGAALSQEGLQGFLVEAHPDNACSPIAPPPPAPVNG 80

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M  N  E+ ++I IPSVFI
Sbjct: 81  SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
           GE S+  L+  F YEKG  ++LVP+ S PL YYLIPF              MI + +Q R
Sbjct: 141 GERSSEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMIVRCIQHR 200

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
            R +RNRL K+QLK++P H ++KGD+YDVCAICLDEYEDGDKLR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPW 260

Query: 980 LTKTKK 997
           LT+T+K
Sbjct: 261 LTQTRK 266



 Score = 24.6 bits (52), Expect(2) = 6e-79
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 991  QKTCPVCKQKV 1023
            +KTCP+CKQ V
Sbjct: 265  RKTCPICKQPV 275


>ref|XP_002696473.1| PREDICTED: ring finger protein 167-like [Bos taurus].
          Length = 353

 Score =  260 bits (664), Expect = 2e-69
 Identities = 124/246 (50%), Positives = 166/246 (67%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           PV   + A +  N S  F DLPA FG  L  EGLKGFL+ ++P NAC PI PPP    + 
Sbjct: 21  PVRGLIRATSDHNGSMEFADLPALFGAALSPEGLKGFLVEAQPANACSPIAPPPPAQANG 80

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR DC FD KVL+AQ+AGY AA+VHNV+S++L++M  ++ EV ++I IPSVFI
Sbjct: 81  SVFIALLRRFDCKFDLKVLHAQKAGYGAAVVHNVNSNELLNMVGSNEEVQQQIWIPSVFI 140

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
            E S+  L+  F Y++G  ++LVP+      Y+ I F              +I  ++  +
Sbjct: 141 SEKSSQYLRAFFIYQQGAQVLLVPDNGFLSTYFFILFYGILAMLILGTGAIVIVHWIHFQ 200

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
            +  RN L K+QLK++P H +++GD YDVCAICLDEYEDGDKLR+LPC+HAYHC+CVDPW
Sbjct: 201 KQRWRNLLTKEQLKQIPTHDYRRGDRYDVCAICLDEYEDGDKLRVLPCAHAYHCRCVDPW 260

Query: 980 LTKTKK 997
           LT+TKK
Sbjct: 261 LTQTKK 266


>ref|XP_594949.2| PREDICTED: ring finger protein 167 [Bos taurus].
          Length = 353

 Score =  260 bits (664), Expect = 2e-69
 Identities = 124/246 (50%), Positives = 166/246 (67%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           PV   + A +  N S  F DLPA FG  L  EGLKGFL+ ++P NAC PI PPP    + 
Sbjct: 21  PVRGLIRATSDHNGSMEFADLPALFGAALSPEGLKGFLVEAQPANACSPIAPPPPAQANG 80

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR DC FD KVL+AQ+AGY AA+VHNV+S++L++M  ++ EV ++I IPSVFI
Sbjct: 81  SVFIALLRRFDCKFDLKVLHAQKAGYGAAVVHNVNSNELLNMVGSNEEVQQQIWIPSVFI 140

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
            E S+  L+  F Y++G  ++LVP+      Y+ I F              +I  ++  +
Sbjct: 141 SEKSSQYLRAFFIYQQGAQVLLVPDNGFLSTYFFILFYGILAMLILGTGAIVIVHWIHFQ 200

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
            +  RN L K+QLK++P H +++GD YDVCAICLDEYEDGDKLR+LPC+HAYHC+CVDPW
Sbjct: 201 KQRWRNLLTKEQLKQIPTHDYRRGDRYDVCAICLDEYEDGDKLRVLPCAHAYHCRCVDPW 260

Query: 980 LTKTKK 997
           LT+TKK
Sbjct: 261 LTQTKK 266


>ref|XP_002688963.1| PREDICTED: zinc and ring finger 4 [Bos taurus].
          Length = 478

 Score =  183 bits (464), Expect = 2e-46
 Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 8/253 (3%)
 Frame = +2

Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
           L P +A V A    N+S   F D+PA FG  L   G++G+L+ +KP NAC PI  P   +
Sbjct: 142 LAPSQAVVRAVVDGNSSMVDFADMPALFGAPLAPGGVRGYLMEAKPANACHPIQGPRPGN 201

Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
            S G  IVLIRR DC FD KVL+AQRAG++AAIVHNV SDDL+ M     ++ ++I IPS
Sbjct: 202 GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVRSDDLVRMAHVYEDLRQQIAIPS 260

Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
           VF+GE+++  L+     +K  H++L+P++    +    P                   FV
Sbjct: 261 VFVGEAASQDLRVITRCDKAAHVVLLPDYPPHPDLDCHPVLAVSWVLGRALALLTSAVFV 320

Query: 791 QDR-------HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
             R        RA    ++    ++  +  F + +  D+CAICLDEYE+GD+L++LPCSH
Sbjct: 321 LQRLWRWLWSWRASGQAVKAQATQRAQVRTFTRCN--DLCAICLDEYEEGDRLKVLPCSH 378

Query: 950 AYHCKCVDPWLTK 988
            YHCKC+DPW ++
Sbjct: 379 TYHCKCIDPWFSQ 391


>ref|XP_595563.4| PREDICTED: zinc and ring finger 4 [Bos taurus].
          Length = 480

 Score =  183 bits (464), Expect = 2e-46
 Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 8/253 (3%)
 Frame = +2

Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
           L P +A V A    N+S   F D+PA FG  L   G++G+L+ +KP NAC PI  P   +
Sbjct: 144 LAPSQAVVRAVVDGNSSMVDFADMPALFGAPLAPGGVRGYLMEAKPANACHPIQGPRPGN 203

Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
            S G  IVLIRR DC FD KVL+AQRAG++AAIVHNV SDDL+ M     ++ ++I IPS
Sbjct: 204 GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVRSDDLVRMAHVYEDLRQQIAIPS 262

Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
           VF+GE+++  L+     +K  H++L+P++    +    P                   FV
Sbjct: 263 VFVGEAASQDLRVITRCDKAAHVVLLPDYPPHPDLDCHPVLAVSWVLGRALALLTSAVFV 322

Query: 791 QDR-------HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
             R        RA    ++    ++  +  F + +  D+CAICLDEYE+GD+L++LPCSH
Sbjct: 323 LQRLWRWLWSWRASGQAVKAQATQRAQVRTFTRCN--DLCAICLDEYEEGDRLKVLPCSH 380

Query: 950 AYHCKCVDPWLTK 988
            YHCKC+DPW ++
Sbjct: 381 TYHCKCIDPWFSQ 393


>ref|NP_001093178.1| goliath homolog [Bos taurus].
          Length = 419

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 23/253 (9%)
 Frame = +2

Query: 299 ASQTFDDLPARFGYRLPAEGLKGFLINSKPENA------CEP----IVPPPLKDNSSGTF 448
           A  TF     R+G   P   ++G ++   P +       C+P     VPP +K      +
Sbjct: 50  APLTFRIDRGRYGLDSPKAEVRGQVLAPLPIHGVADHLGCDPQTRFFVPPNIKQ-----W 104

Query: 449 IVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDD----LISMGSNDIEVLKKIDIPSVF 616
           I L++R +C F EK+  A      A +++N  S +    +   G+ DI  +   ++    
Sbjct: 105 IALLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTGDIIAVMITELRGKD 164

Query: 617 IGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF--- 787
           I      ++  + T   G  +         L +  I F             + I K    
Sbjct: 165 ILSYLEKNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYT 224

Query: 788 -VQDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSH 949
             +DR++ R     K  + KL     KKGD     ++D CA+C++ Y+  D +RILPC H
Sbjct: 225 NARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKH 284

Query: 950 AYHCKCVDPWLTK 988
            +H  CVDPWL++
Sbjct: 285 VFHKSCVDPWLSE 297


>ref|XP_002691197.1| PREDICTED: ring finger protein 133-like [Bos taurus].
          Length = 393

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
 Frame = +2

Query: 329 RFGYRLPAEGLKGFLINSKPEN----ACEP----IVPPPLKDNSSGTFIVLIRRLDCNFD 484
           RFG   P EG +G +   + E+     CE     +VP       +  ++ L+ R  C F 
Sbjct: 58  RFGDSSPKEGARGLVGVPRAEDRDPEGCEAGTRFLVPG---GQGAAPWVALVARGGCTFK 114

Query: 485 EKVLNAQRAGYKAAIVHNVDSDDLISM-----GSNDIEVLKKIDIPSVFIGESSANSLKD 649
           EKVL A R    A +++N +    ++      G+ +I V+         I E     +  
Sbjct: 115 EKVLAAARRNASAVVLYNEERHGNLTAPMSHAGTGNIVVIMVSYPKGREIVELVQKDIPV 174

Query: 650 EFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRK 829
             T   G   +     +  + +  I F             + I +F+    +      RK
Sbjct: 175 TVTIGVGTRHVQEFISAQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQSHRK 234

Query: 830 DQLK---KLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
           +  K   +LP+H  K G+     + + CA+C++ ++  D +RILPC H +H  C+DPWL
Sbjct: 235 ETKKVIGQLPVHTVKHGEKGIDVDAESCAVCIENFKGRDVIRILPCKHIFHRICIDPWL 293


>ref|XP_582694.4| PREDICTED: ring finger protein 133-like [Bos taurus].
          Length = 393

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
 Frame = +2

Query: 329 RFGYRLPAEGLKGFLINSKPEN----ACEP----IVPPPLKDNSSGTFIVLIRRLDCNFD 484
           RFG   P EG +G +   + E+     CE     +VP       +  ++ L+ R  C F 
Sbjct: 58  RFGDSSPKEGARGLVGVPRAEDRDPEGCEAGTRFLVPG---GQGAAPWVALVARGGCTFK 114

Query: 485 EKVLNAQRAGYKAAIVHNVDSDDLISM-----GSNDIEVLKKIDIPSVFIGESSANSLKD 649
           EKVL A R    A +++N +    ++      G+ +I V+         I E     +  
Sbjct: 115 EKVLAAARRNASAVVLYNEERHGNLTAPMSHAGTGNIVVIMVSYPKGREIVELVQKDIPV 174

Query: 650 EFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRK 829
             T   G   +     +  + +  I F             + I +F+    +      RK
Sbjct: 175 TVTIGVGTRHVQEFISAQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQSHRK 234

Query: 830 DQLK---KLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
           +  K   +LP+H  K G+     + + CA+C++ ++  D +RILPC H +H  C+DPWL
Sbjct: 235 ETKKVIGQLPVHTVKHGEKGIDVDAESCAVCIENFKGRDVIRILPCKHIFHRICIDPWL 293


>ref|XP_871924.4| PREDICTED: ring finger protein 150 [Bos taurus].
          Length = 408

 Score = 67.8 bits (164), Expect(2) = 7e-12
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
 Frame = +2

Query: 791 QDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAY 955
           +DR++ R     K  + KL I   KKGD     ++D CA+C++ Y+  D +RILPC H +
Sbjct: 211 RDRNQRRLGDAAKKAISKLQIRTIKKGDKEMEPDFDNCAVCIEGYKPNDIVRILPCRHLF 270

Query: 956 HCKCVDPWL 982
           H  CVDPWL
Sbjct: 271 HKSCVDPWL 279



 Score = 21.2 bits (43), Expect(2) = 7e-12
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 988  NQKTCPVCKQKVV 1026
            + +TCP+CK  ++
Sbjct: 281  DHRTCPMCKMNIL 293


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,731,857
Number of extensions: 850393
Number of successful extensions: 2651
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2625
Number of HSP's successfully gapped: 41
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001080
         (1036 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534303.1| PREDICTED: similar to RING finger protein 13 is...   528   e-150
Alignment   gi|XP_865979.1| PREDICTED: similar to RING finger protein 13 is...   510   e-145
Alignment   gi|XP_866005.1| PREDICTED: similar to RING finger protein 13 is...   487   e-138
Alignment   gi|XP_865990.1| PREDICTED: similar to ring finger protein 13 is...   487   e-138
Alignment   gi|XP_865960.1| PREDICTED: similar to RING finger protein 13 is...   454   e-128
Alignment   gi|XP_546376.2| PREDICTED: similar to ring finger protein 167 [...   239   6e-64
Alignment   gi|XP_546574.2| PREDICTED: similar to ring finger protein 167 [...   205   7e-53
Alignment   gi|XP_542147.1| PREDICTED: similar to zinc and ring finger 4 [C...   182   6e-46
Alignment   gi|XP_849454.1| PREDICTED: similar to ring finger protein 150 [...    80   2e-15
Alignment   gi|XP_531881.2| PREDICTED: similar to ring finger protein 130 i...    69   1e-11

>ref|XP_534303.1| PREDICTED: similar to RING finger protein 13 isoform 1 [Canis
            familiaris].
          Length = 381

 Score =  528 bits (1359), Expect = e-150
 Identities = 262/289 (90%), Positives = 267/289 (92%)
 Frame = +2

Query: 170  MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
            MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1    MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
            AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61   AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
            VHNVDSDDLISMGSNDI+VLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121  VHNVDSDDLISMGSNDIDVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180

Query: 710  EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
            EYYLIPF             FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181  EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
            AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK      +K+  SQ
Sbjct: 241  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289


>ref|XP_865979.1| PREDICTED: similar to RING finger protein 13 isoform 3 [Canis
            familiaris].
          Length = 414

 Score =  510 bits (1314), Expect = e-145
 Identities = 261/322 (81%), Positives = 267/322 (82%), Gaps = 33/322 (10%)
 Frame = +2

Query: 170  MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
            MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1    MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
            AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61   AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530  VHNVDSDDLISMGSND---------------------------------IEVLKKIDIPS 610
            VHNVDSDDLISMGSND                                 ++VLKKIDIPS
Sbjct: 121  VHNVDSDDLISMGSNDSKVPRQVPYTEPASPSTCVSYGIIRVILLFFYTVDVLKKIDIPS 180

Query: 611  VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
            VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPF             FMITKFV
Sbjct: 181  VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFV 240

Query: 791  QDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCV 970
            QDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCV
Sbjct: 241  QDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCV 300

Query: 971  DPWLTKTKKPVRSASKKLYLSQ 1036
            DPWLTKTKK      +K+  SQ
Sbjct: 301  DPWLTKTKKTCPVCKQKVVPSQ 322


>ref|XP_866005.1| PREDICTED: similar to RING finger protein 13 isoform 5 [Canis
           familiaris].
          Length = 352

 Score =  487 bits (1254), Expect = e-138
 Identities = 243/260 (93%), Positives = 246/260 (94%)
 Frame = +2

Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
           MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1   MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
           AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
           VHNVDSDDLISMGSNDI+VLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180

Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
           EYYLIPF             FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890 AICLDEYEDGDKLRILPCSH 949
           AICLDEYEDGDKLRILPCSH
Sbjct: 241 AICLDEYEDGDKLRILPCSH 260


>ref|XP_865990.1| PREDICTED: similar to ring finger protein 13 isoform 4 [Canis
           familiaris].
          Length = 268

 Score =  487 bits (1254), Expect = e-138
 Identities = 243/260 (93%), Positives = 246/260 (94%)
 Frame = +2

Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
           MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1   MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
           AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
           VHNVDSDDLISMGSNDI+VLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180

Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
           EYYLIPF             FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890 AICLDEYEDGDKLRILPCSH 949
           AICLDEYEDGDKLRILPCSH
Sbjct: 241 AICLDEYEDGDKLRILPCSH 260


>ref|XP_865960.1| PREDICTED: similar to RING finger protein 13 isoform 2 [Canis
            familiaris].
          Length = 354

 Score =  454 bits (1167), Expect = e-128
 Identities = 232/289 (80%), Positives = 237/289 (82%)
 Frame = +2

Query: 170  MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
            MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1    MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
            AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61   AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
            VHNVDSDDLISMGSND +                             GHIILVPEFSLPL
Sbjct: 121  VHNVDSDDLISMGSNDSKY---------------------------RGHIILVPEFSLPL 153

Query: 710  EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
            EYYLIPF             FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 154  EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 213

Query: 890  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
            AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK      +K+  SQ
Sbjct: 214  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 262


>ref|XP_546376.2| PREDICTED: similar to ring finger protein 167 [Canis familiaris].
          Length = 544

 Score =  239 bits (611), Expect(2) = 6e-64
 Identities = 117/246 (47%), Positives = 162/246 (65%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           P  A V A +       F DLPA FG  L  EGL+GFL+ ++P +AC  + PPP    + 
Sbjct: 210 PARALVRASSAHRRRMDFADLPALFGAALSREGLEGFLVEARPPDACSAVAPPPPGAVNG 269

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR  C+FD KVLNAQRAG+ AA+VHNV SD L+SM     E  ++I IPSVF+
Sbjct: 270 SVFIALLRRFGCDFDLKVLNAQRAGFGAAVVHNVHSDALLSMVRGGAEAQQQIAIPSVFV 329

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
           GE SA+ L+  F Y+KG  ++LVP+ +L L Y LIPF              ++ +FV+ +
Sbjct: 330 GERSADYLRALFVYDKGAQVLLVPDDNLLLGYCLIPFTGVVGLLLVASGAGLVVRFVRHQ 389

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
            R RR+RL ++QL+++P   +++G   DVCAICLD YE G++LR+LPC+HAYH +CVDPW
Sbjct: 390 GRLRRSRLTREQLERIPTRDYQRGAPDDVCAICLDAYEVGERLRVLPCAHAYHSRCVDPW 449

Query: 980 LTKTKK 997
           LT+T++
Sbjct: 450 LTQTRR 455



 Score = 23.9 bits (50), Expect(2) = 6e-64
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 991  QKTCPVCKQKV 1023
            ++TCPVCKQ V
Sbjct: 454  RRTCPVCKQPV 464


>ref|XP_546574.2| PREDICTED: similar to ring finger protein 167 [Canis familiaris].
          Length = 250

 Score =  205 bits (521), Expect = 7e-53
 Identities = 103/205 (50%), Positives = 135/205 (65%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           P  A + A +  NAS  F DLPA FG  L  EGL+GFL+ + P NAC PI PPP    + 
Sbjct: 21  PARALIRATSDHNASMDFADLPALFGAALSQEGLQGFLVEAHPANACSPIAPPPPAPVNG 80

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M  N  E+ ++I IPSVFI
Sbjct: 81  SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
           GE S+  L+  F YEKG  ++LVP+ S PL YYLIPF              M+ + +Q R
Sbjct: 141 GERSSEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMVVRCIQHR 200

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGD 874
            R +RNRL K+QLK++P H ++KG+
Sbjct: 201 KRLQRNRLSKEQLKQIPTHDYQKGE 225


>ref|XP_542147.1| PREDICTED: similar to zinc and ring finger 4 [Canis familiaris].
          Length = 363

 Score =  182 bits (461), Expect = 6e-46
 Identities = 104/256 (40%), Positives = 149/256 (58%), Gaps = 8/256 (3%)
 Frame = +2

Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
           L+P EA V A    NAS   F DLPA FG  L  +G++G+L+ +KP NAC PI  P   +
Sbjct: 23  LVPSEALVRAVLDGNASTVDFADLPALFGLPLAPDGVRGYLMEAKPANACHPIEGPRPGN 82

Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
            S G  IVLIRR DC FD KVL+AQRAG++AAIVHNV SD+L+ M     ++ ++I IPS
Sbjct: 83  GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVRSDELVRMAHVYEDLRRQIAIPS 141

Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
           VF+GE+++  L+     +K  H++L+P++    +    P                   FV
Sbjct: 142 VFVGEAASQDLRVIVRCDKAAHVLLLPDYPPCPDLDCHPVLAISWVLGRALALLTSVLFV 201

Query: 791 QDR-------HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
             +          R   ++    ++  +  F + +  D+CAICLDEYE+GD+L+ILPCSH
Sbjct: 202 LRQLWNWLWAWWTRGPAVKPQPCQRAQVRTFTRRN--DLCAICLDEYEEGDQLKILPCSH 259

Query: 950 AYHCKCVDPWLTKTKK 997
            YHCKC+DPW ++  +
Sbjct: 260 TYHCKCIDPWFSQAAR 275


>ref|XP_849454.1| PREDICTED: similar to ring finger protein 150 [Canis familiaris].
          Length = 855

 Score = 79.7 bits (195), Expect(2) = 2e-15
 Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 20/238 (8%)
 Frame = +2

Query: 329  RFGYRLPAEGLKGFLINSKPEN---ACEPIV--PPPLKDNSSGTFIVLIRRLDCNFDEKV 493
            R+G   P +  +G ++ +   +   AC+P      P +  S   +I LI + +C + +K+
Sbjct: 493  RYGEHSPKQDARGQVVMASAAHDRLACDPGTRFAAPGRGRS---WIALIPKGNCTYRDKI 549

Query: 494  LNAQRAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK 667
             NA      A ++ NV S  +D ++M    +E +  I IP    G+   + L+   T   
Sbjct: 550  RNAFLQNASAVVIFNVGSGTNDTVTMSHAGVEDIVAIMIPEPK-GKEIVSLLERNITVTM 608

Query: 668  ----GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNRL 823
                G   +        + +  I F             + I +F     +DR++ R    
Sbjct: 609  YITIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDA 668

Query: 824  RKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
             K  + KL +   KKGD     ++D CA+C++ Y+  D +RILPC H +H  CVDPWL
Sbjct: 669  AKKAISKLQVRTIKKGDKETEPDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 726



 Score = 21.2 bits (43), Expect(2) = 2e-15
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 988  NQKTCPVCKQKVV 1026
            + +TCP+CK  ++
Sbjct: 728  DHRTCPMCKMNIL 740


>ref|XP_531881.2| PREDICTED: similar to ring finger protein 130 isoform 1 [Canis
           familiaris].
          Length = 235

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
 Frame = +2

Query: 791 QDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAY 955
           +DR++ R     K  + KL     KKGD     ++D CA+C++ Y+  D +RILPC H +
Sbjct: 43  RDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVF 102

Query: 956 HCKCVDPWLTK 988
           H  CVDPWL++
Sbjct: 103 HKSCVDPWLSE 113


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,392,192
Number of extensions: 881795
Number of successful extensions: 2913
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 2891
Number of HSP's successfully gapped: 50
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001080
         (1036 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_899237.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens].    527   e-150
Alignment   gi|NP_009213.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens].    527   e-150
Alignment   gi|NP_056343.1| E3 ubiquitin-protein ligase RNF167 precursor [H...   288   1e-78
Alignment   gi|NP_859061.3| zinc/RING finger protein 4 precursor [Homo sapi...   185   7e-47
Alignment   gi|NP_060904.2| E3 ubiquitin-protein ligase RNF130 precursor [H...    81   1e-15
Alignment   gi|NP_065775.1| RING finger protein 150 precursor [Homo sapiens].     79   4e-15
Alignment   gi|NP_932351.1| RING finger protein 148 precursor [Homo sapiens].     72   1e-12
Alignment   gi|NP_078815.3| E3 ubiquitin-protein ligase RNF128 isoform 2 [H...    72   1e-12
Alignment   gi|NP_631914.1| E3 ubiquitin-protein ligase RNF133 [Homo sapien...    69   7e-12
Alignment   gi|NP_899196.1| E3 ubiquitin-protein ligase RLIM [Homo sapiens].      66   6e-11

>ref|NP_899237.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens].
          Length = 381

 Score =  527 bits (1357), Expect = e-150
 Identities = 261/289 (90%), Positives = 267/289 (92%)
 Frame = +2

Query: 170  MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
            MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1    MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
            AEGLKGFLINSKPENACEPIVPPP+KDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61   AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
            VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGH+ILVPEFSLPL
Sbjct: 121  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL 180

Query: 710  EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
            EYYLIPF             FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181  EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
            AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK      +K+  SQ
Sbjct: 241  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289


>ref|NP_009213.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens].
          Length = 381

 Score =  527 bits (1357), Expect = e-150
 Identities = 261/289 (90%), Positives = 267/289 (92%)
 Frame = +2

Query: 170  MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
            MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1    MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60

Query: 350  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
            AEGLKGFLINSKPENACEPIVPPP+KDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61   AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
            VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGH+ILVPEFSLPL
Sbjct: 121  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL 180

Query: 710  EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
            EYYLIPF             FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181  EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
            AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK      +K+  SQ
Sbjct: 241  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289


>ref|NP_056343.1| E3 ubiquitin-protein ligase RNF167 precursor [Homo sapiens].
          Length = 350

 Score =  288 bits (737), Expect(2) = 1e-78
 Identities = 137/246 (55%), Positives = 175/246 (71%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           P    + A +  NAS  F DLPA FG  L  EGL+GFL+ + P+NAC PI PPP    + 
Sbjct: 21  PTRGLIRATSDHNASMDFADLPALFGATLSQEGLQGFLVEAHPDNACSPIAPPPPAPVNG 80

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M  N  E+ ++I IPSVFI
Sbjct: 81  SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
           GE S+  L+  F YEKG  ++LVP+ + PL YYLIPF              MI + +Q R
Sbjct: 141 GERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGIVGLLVLAMGAVMIARCIQHR 200

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
            R +RNRL K+QLK++P H ++KGD+YDVCAICLDEYEDGDKLR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPW 260

Query: 980 LTKTKK 997
           LT+T+K
Sbjct: 261 LTQTRK 266



 Score = 24.6 bits (52), Expect(2) = 1e-78
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 991  QKTCPVCKQKV 1023
            +KTCP+CKQ V
Sbjct: 265  RKTCPICKQPV 275


>ref|NP_859061.3| zinc/RING finger protein 4 precursor [Homo sapiens].
          Length = 429

 Score =  185 bits (469), Expect = 7e-47
 Identities = 111/274 (40%), Positives = 152/274 (55%), Gaps = 15/274 (5%)
 Frame = +2

Query: 221 ILTVQLFAFLNLL--PVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPE 391
           ++ V+    L+LL  P +A V A   +N+S   F DLPA FG  L  EG++G+L+  KP 
Sbjct: 80  LVAVKALLVLSLLQVPAQAVVRAVLEDNSSSVDFADLPALFGVPLAPEGIRGYLMEVKPA 139

Query: 392 NACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGS 571
           NAC PI  P L + S G  IVLIRR DC FD KVLNAQRAG++AAIVHNV SDDL+SM  
Sbjct: 140 NACHPIEAPRLGNRSLGA-IVLIRRYDCTFDLKVLNAQRAGFEAAIVHNVHSDDLVSMTH 198

Query: 572 NDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXX 751
              ++  +I IPSVF+ E+++  L+      K  H +L+P+     +    P        
Sbjct: 199 VYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHALLLPDDPPCHDLGCHPVLTVSWVL 258

Query: 752 XXXXXXFMITKFV------------QDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAI 895
                  +   FV              R   + +  +K Q++    H        D+CAI
Sbjct: 259 GCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQKAQVRTFTWHN-------DLCAI 311

Query: 896 CLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 997
           CLDEYE+GD+L+ILPCSH YHCKC+DPW ++  +
Sbjct: 312 CLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPR 345


>ref|NP_060904.2| E3 ubiquitin-protein ligase RNF130 precursor [Homo sapiens].
          Length = 419

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 23/253 (9%)
 Frame = +2

Query: 299 ASQTFDDLPARFGYRLPAEGLKGFLINSKPENA------CEP----IVPPPLKDNSSGTF 448
           A  TF     R+G   P   ++G ++   P +       C+P     VPP +K      +
Sbjct: 50  APLTFRIDRGRYGLDSPKAEVRGQVLAPLPLHGVADHLGCDPQTRFFVPPNIKQ-----W 104

Query: 449 IVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDD----LISMGSNDIEVLKKIDIPSVF 616
           I L++R +C F EK+  A      A +++N  S +    +   G+ DI  +   ++    
Sbjct: 105 IALLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTGDIIAVMITELRGKD 164

Query: 617 IGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF--- 787
           I      ++  + T   G  +         L +  I F             + I K    
Sbjct: 165 ILSYLEKNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYT 224

Query: 788 -VQDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSH 949
             +DR++ R     K  + KL     KKGD     ++D CA+C++ Y+  D +RILPC H
Sbjct: 225 NARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKH 284

Query: 950 AYHCKCVDPWLTK 988
            +H  CVDPWL++
Sbjct: 285 VFHKSCVDPWLSE 297


>ref|NP_065775.1| RING finger protein 150 precursor [Homo sapiens].
          Length = 438

 Score = 79.0 bits (193), Expect(2) = 4e-15
 Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 21/239 (8%)
 Frame = +2

Query: 329 RFGYRLPAEGLKGFLINSKPEN---ACEP---IVPPPLKDNSSGTFIVLIRRLDCNFDEK 490
           R+G   P +  +G ++ +   +   AC+P      P    N    +I LI + +C + +K
Sbjct: 76  RYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPTRGKN----WIALIPKGNCTYRDK 131

Query: 491 VLNAQRAGYKAAIVHNVDSD--DLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYE 664
           + NA      A ++ NV S+  + I+M    +E +  I IP    G+   + L+   T  
Sbjct: 132 IRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPK-GKEIVSLLERNITVT 190

Query: 665 K----GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNR 820
                G   +        + +  I F             + I +F     +DR++ R   
Sbjct: 191 MYITIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGD 250

Query: 821 LRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
             K  + KL I   KKGD     ++D CA+C++ Y+  D +RILPC H +H  CVDPWL
Sbjct: 251 AAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 309



 Score = 21.2 bits (43), Expect(2) = 4e-15
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 988  NQKTCPVCKQKVV 1026
            + +TCP+CK  ++
Sbjct: 311  DHRTCPMCKMNIL 323


>ref|NP_932351.1| RING finger protein 148 precursor [Homo sapiens].
          Length = 305

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 19/236 (8%)
 Frame = +2

Query: 332 FGYRLPAEGLKGF--LINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQ 505
           FG   P E + G   L     +NAC P+     +   + +++ LI R  C F  K+  A 
Sbjct: 62  FGNHSPLERVSGVVALPEGWNQNACHPLTNFS-RPKQADSWLALIERGGCTFTHKINVAA 120

Query: 506 RAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHI 679
             G    I++N       +  M     E     +I +V I  S+   ++   + +KG ++
Sbjct: 121 EKGANGVIIYNYQGTGSKVFPMSHQGTE-----NIVAVMI--SNLKGMEILHSIQKGVYV 173

Query: 680 ILVPEFS-LPLEY------YLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQL 838
            ++ E   + +++      YL  F             + +T  V +    RR++++ D  
Sbjct: 174 TVIIEVGRMHMQWVSHYIMYLFTFLAATIAYFYLDCVWRLTPRVPNSFTRRRSQIKTDVK 233

Query: 839 K---KLPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
           K   +L +   K+GDE      D C +C D Y+  D +RIL C H +H  C+DPWL
Sbjct: 234 KAIDQLQLRVLKEGDEELDLNEDNCVVCFDTYKPQDVVRILTCKHFFHKACIDPWL 289


>ref|NP_078815.3| E3 ubiquitin-protein ligase RNF128 isoform 2 [Homo sapiens].
          Length = 402

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 20/204 (9%)
 Frame = +2

Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLK--KIDI 604
           N+   +I LI R +C F EK+  A R    A +++N         G+  I++     +DI
Sbjct: 86  NTKKPWIALIERGNCTFSEKIQTAGRRNADAVVIYNAPET-----GNQTIQMANFGAVDI 140

Query: 605 PSVFIGESSANSLKDEFTYEKGGHIILVPEFS---------LPLEYYLIPFXXXXXXXXX 757
            ++ IG      +      ++G  + +V E             + +  + F         
Sbjct: 141 VAIMIGNLKGTKILQSI--QRGIQVTMVIEVGKKHGPWVNHYSIFFVSVSFFIITAATVG 198

Query: 758 XXXXFMITKFVQDRHRARRNRLRKDQLKK----LPIHKFKKGDEY-----DVCAICLDEY 910
               +   +    R ++R+ R  K   KK    L +   K+GD+      D CA+C++ Y
Sbjct: 199 YFIFYSARRLRNARAQSRKQRQLKADAKKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELY 258

Query: 911 EDGDKLRILPCSHAYHCKCVDPWL 982
           +  D +RIL C+H +H  CVDPWL
Sbjct: 259 KPNDLVRILTCNHIFHKTCVDPWL 282


>ref|NP_631914.1| E3 ubiquitin-protein ligase RNF133 [Homo sapiens].
          Length = 376

 Score = 68.9 bits (167), Expect = 7e-12
 Identities = 64/231 (27%), Positives = 94/231 (40%), Gaps = 15/231 (6%)
 Frame = +2

Query: 335 GYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAG 514
           G  +P EG        K +NAC P      +   S T++ LI R  C F +K+  A   G
Sbjct: 73  GVIVPPEG--------KIQNACNPNTIFS-RSKYSETWLALIERGGCTFTQKIKVATEKG 123

Query: 515 YKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILV 688
               I++NV    + +  M     E     D+  V IG      +      +KG  I  V
Sbjct: 124 ASGVIIYNVPGTGNQVFPMFHQAFE-----DVVVVMIGNLKGTEIFH--LIKKGVLITAV 176

Query: 689 PEFS----LPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARR-NRLRKD---QLKK 844
            E      + + +YL+ F             + I +    R + RR  RL  D      +
Sbjct: 177 VEVGRKHIIWMNHYLVSFVIVTTATLAYFIFYHIHRLCLARIQNRRWQRLTTDLQNTFGQ 236

Query: 845 LPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
           L +   K+GDE      D C IC + Y+  D +RIL C H +H  C+DPW+
Sbjct: 237 LQLRVVKEGDEEINPNGDSCVICFERYKPNDIVRILTCKHFFHKNCIDPWI 287


>ref|NP_899196.1| E3 ubiquitin-protein ligase RLIM [Homo sapiens].
          Length = 624

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = +2

Query: 821 LRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTK 988
           L K+Q+  L +  F + D    C++C+ EY +G+KLR LPCSH YH  C+D WL++
Sbjct: 548 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 603


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,824,273
Number of extensions: 878292
Number of successful extensions: 2832
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2808
Number of HSP's successfully gapped: 39
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001080
         (1036 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001106884.1| E3 ubiquitin-protein ligase RNF13 isoform a ...   518   e-147
Alignment   gi|NP_036013.1| E3 ubiquitin-protein ligase RNF13 isoform b [Mu...   478   e-135
Alignment   gi|NP_081721.1| E3 ubiquitin-protein ligase RNF167 precursor [M...   292   5e-80
Alignment   gi|NP_035613.2| zinc and ring finger 4 [Mus musculus].               103   2e-22
Alignment   gi|NP_067515.2| E3 ubiquitin-protein ligase RNF130 precursor [M...    80   2e-15
Alignment   gi|NP_796352.2| RING finger protein 150 precursor [Mus musculus].     77   1e-14
Alignment   gi|NP_001028307.2| E3 ubiquitin-protein ligase RNF149 precursor...    70   2e-12
Alignment   gi|NP_082030.1| ring finger protein 148 [Mus musculus].               67   2e-11
Alignment   gi|NP_035406.3| E3 ubiquitin-protein ligase RLIM [Mus musculus].      67   3e-11
Alignment   gi|NP_075759.3| E3 ubiquitin-protein ligase RNF128 precursor [M...    67   3e-11

>ref|NP_001106884.1| E3 ubiquitin-protein ligase RNF13 isoform a [Mus musculus].
          Length = 381

 Score =  518 bits (1335), Expect = e-147
 Identities = 257/289 (88%), Positives = 264/289 (91%)
 Frame = +2

Query: 170  MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
            MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTF+DLPARFGYRLP
Sbjct: 1    MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFEDLPARFGYRLP 60

Query: 350  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
            AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61   AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530  VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
            VHNVDSDDLISMGSNDI+ LKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPE SLPL
Sbjct: 121  VHNVDSDDLISMGSNDIDTLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPELSLPL 180

Query: 710  EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
            EYYLIPF             FMITKFVQDRHR RRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181  EYYLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890  AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
            AICL+EYEDGDKLRILPCSHAYHCKCVDPWLTKTKK      +K+  SQ
Sbjct: 241  AICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289


>ref|NP_036013.1| E3 ubiquitin-protein ligase RNF13 isoform b [Mus musculus].
          Length = 268

 Score =  478 bits (1230), Expect = e-135
 Identities = 238/260 (91%), Positives = 243/260 (93%)
 Frame = +2

Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
           MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTF+DLPARFGYRLP
Sbjct: 1   MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFEDLPARFGYRLP 60

Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
           AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61  AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120

Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
           VHNVDSDDLISMGSNDI+ LKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPE SLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDTLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPELSLPL 180

Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
           EYYLIPF             FMITKFVQDRHR RRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPVHKFKKGDEYDVC 240

Query: 890 AICLDEYEDGDKLRILPCSH 949
           AICL+EYEDGDKLRILPCSH
Sbjct: 241 AICLEEYEDGDKLRILPCSH 260


>ref|NP_081721.1| E3 ubiquitin-protein ligase RNF167 precursor [Mus musculus].
          Length = 347

 Score =  292 bits (748), Expect(2) = 5e-80
 Identities = 141/246 (57%), Positives = 176/246 (71%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           PV   + A +  NAS  F DLPA FG  L  EGL+GFL+ + PENAC PI PPP    + 
Sbjct: 21  PVRGLIRATSEHNASMDFADLPALFGATLSDEGLQGFLVEAHPENACGPIAPPPSAPVNG 80

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M  N  E+ ++I IPSVFI
Sbjct: 81  SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
           GE SA  L+  F YEKG  ++LVP+ S PL YYLIPF              +I + +Q R
Sbjct: 141 GERSAEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGTVLIVRCIQHR 200

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
            R +RNRL K+QLK++P H ++KGDEYDVCAICLDEYEDGDKLR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPW 260

Query: 980 LTKTKK 997
           LT+T+K
Sbjct: 261 LTQTRK 266



 Score = 24.6 bits (52), Expect(2) = 5e-80
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 991  QKTCPVCKQKV 1023
            +KTCP+CKQ V
Sbjct: 265  RKTCPICKQPV 275


>ref|NP_035613.2| zinc and ring finger 4 [Mus musculus].
          Length = 327

 Score =  103 bits (258), Expect = 2e-22
 Identities = 77/267 (28%), Positives = 125/267 (46%)
 Frame = +2

Query: 188 MLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKG 367
           M   + T+V  +  V  +  L+L P +A V       +S  F DLPA  G  +  +  +G
Sbjct: 1   MARFAWTRVAPVALVTFWLVLSLSPTDAQV-----NLSSVDFLDLPALLGVPVDPKRARG 55

Query: 368 FLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDS 547
           +L+ ++P +AC  I   P  DN S   +VL+R L C++++    AQRAG  AA V     
Sbjct: 56  YLLVARPADACHAI-EGPWPDNHSLDPLVLVRPLGCSWEQTGRRAQRAGATAASVGPEAP 114

Query: 548 DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIP 727
             L      D+EV  + D P+  +   +      E       H ++V  ++L     L  
Sbjct: 115 GQLREF--EDLEVTVRCDQPARVLLPHAEPCPDPEC------HPVVVASWALARALALAA 166

Query: 728 FXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDE 907
                          +          +R   ++    +K  +  F +    D+CAICLD+
Sbjct: 167 STLFVLRQLWPWVRGL---------GSRGTAVKTQTCQKAQVRTFTRLS--DLCAICLDD 215

Query: 908 YEDGDKLRILPCSHAYHCKCVDPWLTK 988
           YE+G++L+ILPC+HAYHC+C+DPW ++
Sbjct: 216 YEEGERLKILPCAHAYHCRCIDPWFSR 242


>ref|NP_067515.2| E3 ubiquitin-protein ligase RNF130 precursor [Mus musculus].
          Length = 419

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%)
 Frame = +2

Query: 329 RFGYRLPAEGLKGFLINSKPENA------CEP----IVPPPLKDNSSGTFIVLIRRLDCN 478
           R+G   P   ++G ++   P +       C+P     VPP +K      +I L++R +C 
Sbjct: 60  RYGLDSPKAEVRGQVLAPLPIHGVADHLGCDPQTRFFVPPNIKQ-----WIALLQRGNCT 114

Query: 479 FDEKVLNAQRAGYKAAIVHNVDSDD----LISMGSNDIEVLKKIDIPSVFIGESSANSLK 646
           F EK+  A      A +++N  S +    +   G+ DI  +   ++    I      ++ 
Sbjct: 115 FKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTGDIIAVMITELRGKDILSYLEKNIS 174

Query: 647 DEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARR 814
            + T   G  +         L +  I F             + I K      +DR++ R 
Sbjct: 175 VQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYTNARDRNQRRL 234

Query: 815 NRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
               K  + KL     KKGD     ++D CA+C++ Y+  D +R+LPC H +H  CVDPW
Sbjct: 235 GDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPW 294

Query: 980 LTK 988
           L++
Sbjct: 295 LSE 297


>ref|NP_796352.2| RING finger protein 150 precursor [Mus musculus].
          Length = 437

 Score = 76.6 bits (187), Expect(2) = 1e-14
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 18/236 (7%)
 Frame = +2

Query: 329 RFGYRLPAEGLKGFLI---NSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLN 499
           R+G   P +  +G ++   +++   AC+P        +    +I LI + +C + +K+ N
Sbjct: 75  RYGEHSPKQDARGEVVMASSAQDRLACDPNTKFAAPAHGKH-WIALIPKGNCTYRDKIRN 133

Query: 500 AQRAGYKAAIVHNVDSD--DLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK-- 667
           A      A ++ NV S+  + I+M    +E +  I IP    G+   + L+   T     
Sbjct: 134 AFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPK-GKEIVSLLERNITVTMYI 192

Query: 668 --GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNRLRK 829
             G   +        + +  I F             + I +F     +DR++ R     K
Sbjct: 193 TIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAK 252

Query: 830 DQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
             + KL +   +KGD     ++D CA+C++ Y+  D +RILPC H +H  CVDPWL
Sbjct: 253 KAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 308



 Score = 21.2 bits (43), Expect(2) = 1e-14
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 988  NQKTCPVCKQKVV 1026
            + +TCP+CK  ++
Sbjct: 310  DHRTCPMCKMNIL 322


>ref|NP_001028307.2| E3 ubiquitin-protein ligase RNF149 precursor [Mus musculus].
          Length = 394

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 34/252 (13%)
 Frame = +2

Query: 329 RFG---YRLPAEGLKGFLINSKPENACEP---IVPPPLKDNSSGTFIVLIRRLDCNFDEK 490
           RFG    R   +GL G      P   C P    V P    N+   ++ L+ R  C F +K
Sbjct: 62  RFGESSLREERQGLVGVPRAPAPAEGCAPDTRFVAPGALGNAP--WVALVARGGCTFKDK 119

Query: 491 VLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKG 670
           VL A R    A +V+N++S+       N  E +             + N +    +Y KG
Sbjct: 120 VLAAARRNASAVVVYNLESN------GNATEPMSHA---------GTGNIVVIMISYPKG 164

Query: 671 GHIILVPEFSLPLE--------------------YYLIPFXXXXXXXXXXXXXFMITKFV 790
             I  + +  +P++                    +  I F             + I +F+
Sbjct: 165 REIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFL 224

Query: 791 QDRHRARRNRLRKDQLK---KLPIHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCS 946
               +      RK+  K   +LP+H  K G++  DV    CA+C++ ++  D +RILPC 
Sbjct: 225 YTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCK 284

Query: 947 HAYHCKCVDPWL 982
           H +H  C+DPWL
Sbjct: 285 HIFHRICIDPWL 296


>ref|NP_082030.1| ring finger protein 148 [Mus musculus].
          Length = 316

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 17/234 (7%)
 Frame = +2

Query: 332 FGYRLPAEGLKGFLINSKP--ENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQ 505
           FG   P E + G ++  +   +NAC P+      D +  T++ LI R  C F  K+  A 
Sbjct: 75  FGNHSPLERVSGAVVLPEGWNQNACSPLTNFSRPDQTD-TWLALIERGGCTFTHKINLAA 133

Query: 506 RAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHI 679
             G    I++N     + +  M     E     +I +V IG      L      ++G ++
Sbjct: 134 EKGANGVIIYNYPGTGNKVFPMSHQGTE-----NIVAVMIGNLKGMELLH--LIQQGVYV 186

Query: 680 ILVPEFS---LP-LEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKK- 844
            ++ E     +P L +Y++               +   +        RR R  K  +KK 
Sbjct: 187 TIIIEVGRMHMPWLSHYVMSLFTFLAATVTYLFLYCAWRPRVSNSSTRRQRQLKADVKKA 246

Query: 845 ---LPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
              L +   + GD+      D C +C D Y+  D +RIL C H +H  C+DPWL
Sbjct: 247 IGQLQLRVLQDGDKELDPNEDSCVVCFDMYKAQDVIRILTCKHFFHKTCIDPWL 300


>ref|NP_035406.3| E3 ubiquitin-protein ligase RLIM [Mus musculus].
          Length = 600

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 28/73 (38%), Positives = 45/73 (61%)
 Frame = +2

Query: 770 FMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
           F++ +  +D+ R     L K+Q+  L +  F + D    C++C+ EY +G+KLR LPCSH
Sbjct: 511 FLLNEDDEDQPRG----LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSH 566

Query: 950 AYHCKCVDPWLTK 988
            YH  C+D WL++
Sbjct: 567 EYHVHCIDRWLSE 579


>ref|NP_075759.3| E3 ubiquitin-protein ligase RNF128 precursor [Mus musculus].
          Length = 428

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 23/240 (9%)
 Frame = +2

Query: 332 FGYRLPAEGLKGFLINSKPE---NACEP----IVPPPLKDNSSGTFIVLIRRLD-CNFDE 487
           +G   P E + G L+        NAC P     VP         +++ LI+R   C F +
Sbjct: 71  YGQDSPLEPVSGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFAD 130

Query: 488 KVLNAQRAGYKAAIVHNVDS--DDLISM---GSNDIEVLKKIDIPSVFIGESSANSLKDE 652
           K+  A   G   A++ N     +++I M   G+ DI  +   ++    I +S    ++  
Sbjct: 131 KIHLASERGASGAVIFNFPGTRNEVIPMSHPGAGDIVAIMIGNLKGTKILQSIQRGIQVT 190

Query: 653 FTYEKGG-HIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRK 829
              E G  H   V  +S+   +  + F             +   +    R ++R+ R  K
Sbjct: 191 MVIEVGKKHGPWVNHYSI--FFVSVSFFIITAATVGYFIFYSARRLRNARAQSRKQRQLK 248

Query: 830 DQLKK----LPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
              KK    L +   K+GD+      D CA+C++ Y+  D +RIL C+H +H  CVDPWL
Sbjct: 249 ADAKKAIGKLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWL 308


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,613,795
Number of extensions: 748522
Number of successful extensions: 2218
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 32
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001080
         (1036 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003358656.1| PREDICTED: e3 ubiquitin-protein ligase RNF13...   464   e-131
Alignment   gi|XP_003131954.1| PREDICTED: e3 ubiquitin-protein ligase RNF16...   288   5e-79
Alignment   gi|XP_003123129.1| PREDICTED: zinc/RING finger protein 4-like [...   191   7e-49
Alignment   gi|XP_003357062.1| PREDICTED: RING finger protein 150 [Sus scro...    79   2e-15
Alignment   gi|XP_001924902.3| PREDICTED: e3 ubiquitin-protein ligase RLIM-...    68   5e-12
Alignment   gi|XP_003123692.2| PREDICTED: e3 ubiquitin-protein ligase RNF13...    69   6e-12
Alignment   gi|XP_003135236.1| PREDICTED: e3 ubiquitin-protein ligase RLIM ...    66   4e-11
Alignment   gi|XP_003360418.1| PREDICTED: e3 ubiquitin-protein ligase RLIM ...    66   4e-11
Alignment   gi|XP_003134781.1| PREDICTED: RING finger protein 148-like [Sus...    63   2e-10
Alignment   gi|XP_001925877.2| PREDICTED: zinc/RING finger protein 3 [Sus s...    62   4e-10

>ref|XP_003358656.1| PREDICTED: e3 ubiquitin-protein ligase RNF13-like [Sus scrofa].
          Length = 396

 Score =  464 bits (1195), Expect = e-131
 Identities = 228/251 (90%), Positives = 230/251 (91%)
 Frame = +2

Query: 284  YNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIR 463
            YNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIR
Sbjct: 54   YNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIR 113

Query: 464  RLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSL 643
            RLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSL
Sbjct: 114  RLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSL 173

Query: 644  KDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRL 823
            KDEFTYEKGGHIILVPEFSLPLEYYLIPF             FMITKFVQDRHRARRNRL
Sbjct: 174  KDEFTYEKGGHIILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRL 233

Query: 824  RKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPV 1003
            RKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK  
Sbjct: 234  RKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 293

Query: 1004 RSASKKLYLSQ 1036
                +K+  SQ
Sbjct: 294  PVCKQKVVPSQ 304


>ref|XP_003131954.1| PREDICTED: e3 ubiquitin-protein ligase RNF167-like [Sus scrofa].
          Length = 350

 Score =  288 bits (738), Expect(2) = 5e-79
 Identities = 137/246 (55%), Positives = 176/246 (71%)
 Frame = +2

Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
           P +  + A +  NAS  F DLPA FG  L  EGL+GFL+ + P+NAC PI PPP    + 
Sbjct: 21  PSQGLIRAISDHNASMDFADLPALFGAALSQEGLQGFLVEAHPDNACSPIAPPPPAPVNG 80

Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
             FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M  N  E+ ++I IPSVFI
Sbjct: 81  SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140

Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
           GE S+  L+  F YEKG  ++LVP+ S PL YYLIPF              MI + +Q R
Sbjct: 141 GERSSQYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMIVRCIQHR 200

Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
            R +RNRL K+QLK++P H ++KGD+YDVCAICLDEYEDGD+LR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDRLRVLPCAHAYHSRCVDPW 260

Query: 980 LTKTKK 997
           LT+T+K
Sbjct: 261 LTQTRK 266



 Score = 24.6 bits (52), Expect(2) = 5e-79
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 991  QKTCPVCKQKV 1023
            +KTCP+CKQ V
Sbjct: 265  RKTCPICKQPV 275


>ref|XP_003123129.1| PREDICTED: zinc/RING finger protein 4-like [Sus scrofa].
          Length = 360

 Score =  191 bits (484), Expect = 7e-49
 Identities = 109/257 (42%), Positives = 152/257 (59%), Gaps = 9/257 (3%)
 Frame = +2

Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
           L+P +A V A    N+S   F DLPA FG  L  EG++G+LI +KP NAC PI  P L +
Sbjct: 24  LVPAQAVVRAVLDGNSSTVDFADLPALFGVPLAPEGVRGYLIEAKPANACHPIEGPQLGN 83

Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
            S G  IVLIRR DC FD KVL+AQRAG++AAIVHNV SDDL+ MG    ++ ++I IPS
Sbjct: 84  GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVHSDDLVRMGHVYEDLRRQIAIPS 142

Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
           VF+GE+++  L+     +K  H++L+P++    +    P                   FV
Sbjct: 143 VFMGEAASQDLRAIVRCDKSAHVLLLPDYPPCPDLDCHPVLAVSWVLGRTLALLTSAVFV 202

Query: 791 QDRHR--------ARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCS 946
             RH          R   ++    ++  +  F + +  D+CAICLDEYE+GD+L+ILPCS
Sbjct: 203 L-RHLWNWLWAWWTREPPVKAPAGQRAQVRTFTRRN--DLCAICLDEYEEGDRLKILPCS 259

Query: 947 HAYHCKCVDPWLTKTKK 997
           H YHCKC+DPW ++  +
Sbjct: 260 HTYHCKCIDPWFSQAAR 276


>ref|XP_003357062.1| PREDICTED: RING finger protein 150 [Sus scrofa].
          Length = 443

 Score = 79.0 bits (193), Expect(2) = 2e-15
 Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 18/236 (7%)
 Frame = +2

Query: 329 RFGYRLPAEGLKGFLINSKPEN---ACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLN 499
           R+G   P +  +G ++ +   +   AC+P        +    +I LI + +C + +K+ N
Sbjct: 81  RYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPAHGKN-WIALIPKGNCTYRDKIRN 139

Query: 500 AQRAGYKAAIVHNVDSD--DLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK-- 667
           A      A ++ NV S+  + I+M    +E +  I IP    G+   + L+   T     
Sbjct: 140 AFLQNASAVVIFNVGSNTNETITMSHAGVEDIVAIMIPEPK-GKEIVSLLERNITVTMYI 198

Query: 668 --GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNRLRK 829
             G   +        + +  I F             + I +F     +DR++ R     K
Sbjct: 199 TIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAK 258

Query: 830 DQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
             + KL +   KKGD     ++D CA+C++ Y+  D +RILPC H +H  CVDPWL
Sbjct: 259 KAISKLQVRTIKKGDKETEPDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 314



 Score = 21.2 bits (43), Expect(2) = 2e-15
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 988  NQKTCPVCKQKVV 1026
            + +TCP+CK  ++
Sbjct: 316  DHRTCPMCKMNIL 328


>ref|XP_001924902.3| PREDICTED: e3 ubiquitin-protein ligase RLIM-like [Sus scrofa].
          Length = 635

 Score = 68.2 bits (165), Expect(2) = 5e-12
 Identities = 27/67 (40%), Positives = 41/67 (61%)
 Frame = +2

Query: 788 VQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKC 967
           + D +  +   L K+Q+  L +  F K D    C+IC+ EY +G+K+RILPCSH +H  C
Sbjct: 548 LNDDYLYQATGLTKEQIDNLAVRSFSKYDVLKACSICITEYTEGNKIRILPCSHEFHIHC 607

Query: 968 VDPWLTK 988
           +D WL +
Sbjct: 608 IDRWLAE 614



 Score = 20.4 bits (41), Expect(2) = 5e-12
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 997  TCPVCKQKVV 1026
            TCP+C+ ++V
Sbjct: 617  TCPICRGEIV 626


>ref|XP_003123692.2| PREDICTED: e3 ubiquitin-protein ligase RNF130-like [Sus scrofa].
          Length = 279

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
 Frame = +2

Query: 791 QDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAY 955
           +DR++ R     K  + KL     KKGD     ++D CA+C++ Y+  D +RILPC H +
Sbjct: 87  RDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVF 146

Query: 956 HCKCVDPWLTK 988
           H  CVDPWL++
Sbjct: 147 HKSCVDPWLSE 157


>ref|XP_003135236.1| PREDICTED: e3 ubiquitin-protein ligase RLIM isoform 1 [Sus scrofa].
          Length = 623

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = +2

Query: 821 LRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTK 988
           L K+Q+  L +  F + D    C++C+ EY +G+KLR LPCSH YH  C+D WL++
Sbjct: 547 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 602


>ref|XP_003360418.1| PREDICTED: e3 ubiquitin-protein ligase RLIM isoform 2 [Sus scrofa].
          Length = 623

 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = +2

Query: 821 LRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTK 988
           L K+Q+  L +  F + D    C++C+ EY +G+KLR LPCSH YH  C+D WL++
Sbjct: 547 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 602


>ref|XP_003134781.1| PREDICTED: RING finger protein 148-like [Sus scrofa].
          Length = 303

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 17/234 (7%)
 Frame = +2

Query: 332 FGYRLPAEGLKGFLINSKP--ENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQ 505
           FG   P E + G ++  +   +NAC P+     +   + +++ LI R  C F  K+  A 
Sbjct: 62  FGNHSPLERVSGVVVLPEGWNQNACNPMTNFS-RPEWADSWLALIERGGCTFTHKINVAA 120

Query: 506 RAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHI 679
             G    I++N     + +  M     E        +V IG      L      +KG ++
Sbjct: 121 EKGANGVIIYNYPGTGNKVFPMSHQGTE-----KTVAVMIGNLKGMELLH--LIQKGVYV 173

Query: 680 ILVPEFS---LP-LEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKK- 844
            ++ E     +P L +Y++               F   +        RR R  K  +++ 
Sbjct: 174 TIIIEVGRMHMPWLSHYVMSLFTFLAATVAYLFLFCAWRPRVPSSPTRRRRHIKADVRRA 233

Query: 845 ---LPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
              LP+   K GD     E D C +C D Y+  D +R L C H +H  C+DPWL
Sbjct: 234 IGQLPLRVLKDGDKELDPEEDSCVVCFDIYKPQDVVRTLTCKHFFHKACIDPWL 287


>ref|XP_001925877.2| PREDICTED: zinc/RING finger protein 3 [Sus scrofa].
          Length = 815

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 17/84 (20%)
 Frame = +2

Query: 782 KFVQDRHRARRNRLRKDQLKKLPIHKFKK-----------------GDEYDVCAICLDEY 910
           K  Q R +   NRL    L+K+   KF                         CAICL++Y
Sbjct: 141 KLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCGALDTLSSSSTSDCAICLEKY 200

Query: 911 EDGDKLRILPCSHAYHCKCVDPWL 982
            DG++LR++PC+H +H KCVDPWL
Sbjct: 201 IDGEELRVIPCTHRFHRKCVDPWL 224


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,269,216
Number of extensions: 537100
Number of successful extensions: 1732
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 30
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001080
         (1036 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                         305   3e-80
Sscrofa_Chr14                                                          68   1e-08

>Sscrofa_Chr13 
||          Length = 218635234

 Score =  305 bits (154), Expect = 3e-80
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2        ggacttccgcctcgccttggtgttgtcgtccgcgctccgactctaggctgtggcggtcgg 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089994 ggacttccgcctcgccttggtgttgtcgtccgcgctccgactctaggctgtggcggtcgg 98090053

                                                                            
Query: 62       tgcggagattcaggcatgaagtcaggttaggggacttctcccgcagcaaggcggcagggg 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090054 tgcggagattcaggcatgaagtcaggttaggggacttctcccgcagcaaggcggcagggg 98090113

                                                  
Query: 122      agcctatttgtgttgcgaggtcaggcttccaggt 155
                ||||||||||||||||||||||||||||||||||
Sbjct: 98090114 agcctatttgtgttgcgaggtcaggcttccaggt 98090147



 Score =  272 bits (137), Expect = 4e-70
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                            
Query: 147      cttccaggtgattttaaagcgagatgctgctctccatagggatgctcatgctgtcggcca 206
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98113077 cttccaggtgattttaaagcgagatgctgctctccatagggatgctcatgctgtcggcca 98113136

                                                                            
Query: 207      cacaagtctataccatcttgactgtccagctctttgcattcttaaacctactgcctgtag 266
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98113137 cacaagtctataccatcttgactgtccagctctttgcattcttaaacctactgcctgtag 98113196

                                 
Query: 267      aagcagacgttttagca 283
                |||||||||||||||||
Sbjct: 98113197 aagcagacgttttagca 98113213



 Score =  258 bits (130), Expect = 5e-66
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                            
Query: 363      agggttttttgattaactcaaaaccagagaatgcctgtgaacccatagtgcctcctccac 422
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98146477 agggttttttgattaactcaaaaccagagaatgcctgtgaacccatagtgcctcctccac 98146536

                                                                            
Query: 423      taaaagacaattcttctggcactttcatcgtgttaattagaagacttgattgtaattttg 482
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98146537 taaaagacaattcttctggcactttcatcgtgttaattagaagacttgattgtaattttg 98146596

                          
Query: 483      atgaaaaggt 492
                ||||||||||
Sbjct: 98146597 atgaaaaggt 98146606



 Score =  212 bits (107), Expect = 3e-52
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                            
Query: 669      ggggccacattatcttagttccggaatttagtcttcctctggaatactacctaatcccct 728
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98181367 ggggccacattatcttagttccggaatttagtcttcctctggaatactacctaatcccct 98181426

                                                               
Query: 729      tccttatcatagtgggcatctgtctcatcttgatagtcattttcatg 775
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98181427 tccttatcatagtgggcatctgtctcatcttgatagtcattttcatg 98181473



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                            
Query: 775      gatcacaaaatttgtccaggacagacatagagctagaagaaacagacttcgtaaagatca 834
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98191879 gatcacaaaatttgtccaggacagacatagagctagaagaaacagacttcgtaaagatca 98191938

                                                    
Query: 835      acttaagaaactccctatacataaattcaaaaaagg 870
                ||||||||||||||||||||||||||||||||||||
Sbjct: 98191939 acttaagaaactccctatacataaattcaaaaaagg 98191974



 Score =  182 bits (92), Expect = 3e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                            
Query: 579      ttgaagtactaaagaaaattgacattccatctgtctttattggtgaatcatcagctaatt 638
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98162592 ttgaagtactaaagaaaattgacattccatctgtctttattggtgaatcatcagctaatt 98162651

                                                
Query: 639      ccctgaaagatgaattcacatatgaaaaaggg 670
                ||||||||||||||||||||||||||||||||
Sbjct: 98162652 ccctgaaagatgaattcacatatgaaaaaggg 98162683



 Score =  178 bits (90), Expect = 4e-42
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                            
Query: 489      aggttttaaatgcacagagagcagggtacaaagcagccatagttcacaatgttgattctg 548
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98155625 aggttttaaatgcacagagagcagggtacaaagcagccatagttcacaatgttgattctg 98155684

                                              
Query: 549      atgacctcattagcatgggatccaacgaca 578
                ||||||||||||||||||||||||||||||
Sbjct: 98155685 atgacctcattagcatgggatccaacgaca 98155714



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                            
Query: 868      aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 927
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98226848 aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 98226907

                                       
Query: 928      cagaatccttccctgttcccatg 950
                |||||||||||||||||||||||
Sbjct: 98226908 cagaatccttccctgttcccatg 98226930



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                            
Query: 868      aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 927
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98403433 aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 98403492

                                       
Query: 928      cagaatccttccctgttcccatg 950
                |||||||||||||||||||||||
Sbjct: 98403493 cagaatccttccctgttcccatg 98403515



 Score =  163 bits (82), Expect = 2e-37
 Identities = 82/82 (100%)
 Strand = Plus / Plus

                                                                            
Query: 284      tataattttgaaaatgcatctcagacatttgatgaccttccagcaagatttggttataga 343
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98121118 tataattttgaaaatgcatctcagacatttgatgaccttccagcaagatttggttataga 98121177

                                      
Query: 344      cttccggctgaaggtttaaagg 365
                ||||||||||||||||||||||
Sbjct: 98121178 cttccggctgaaggtttaaagg 98121199



 Score =  147 bits (74), Expect = 1e-32
 Identities = 81/82 (98%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                            
Query: 950      gcttatcattgcaagtgtgtagatccttggctaactaaaacc-aaaaaacctgtccggtc 1008
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 98227216 gcttatcattgcaagtgtgtagatccttggctaactaaaaccaaaaaaacctgtccggtc 98227275

                                      
Query: 1009     tgcaagcaaaaagttgtacctt 1030
                ||||||||||||||||||||||
Sbjct: 98227276 tgcaagcaaaaagttgtacctt 98227297



 Score =  147 bits (74), Expect = 1e-32
 Identities = 81/82 (98%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                            
Query: 950      gcttatcattgcaagtgtgtagatccttggctaactaaaacc-aaaaaacctgtccggtc 1008
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 98403801 gcttatcattgcaagtgtgtagatccttggctaactaaaaccaaaaaaacctgtccggtc 98403860

                                      
Query: 1009     tgcaagcaaaaagttgtacctt 1030
                ||||||||||||||||||||||
Sbjct: 98403861 tgcaagcaaaaagttgtacctt 98403882


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 95/114 (83%), Gaps = 1/114 (0%)
 Strand = Plus / Plus

                                                                            
Query: 289      ttttgaaaatgcatctcagacatttgatgaccttccagcaagatttggttatagacttcc 348
                ||||||||||||| || ||||||||||||| ||| ||||||| || ||||||||||||  
Sbjct: 13162225 ttttgaaaatgcaccttagacatttgatgagctt-cagcaagtttgggttatagacttta 13162283

                                                                      
Query: 349      ggctgaaggtttaaagggttttttgattaactcaaaaccagagaatgcctgtga 402
                ||||||  |  | || | ||||||| |||||||| || ||||| ||||||||||
Sbjct: 13162284 ggctgatagagtgaaagtttttttggttaactcagaagcagagtatgcctgtga 13162337


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,925,472
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 13
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)