Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001080
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069610.1| E3 ubiquitin-protein ligase RNF13 [Bos tauru... 530 e-150
Alignment gi|NP_001069873.2| ring finger protein 167 [Bos taurus]. 289 6e-79
Alignment gi|XP_002696473.1| PREDICTED: ring finger protein 167-like [Bos... 260 2e-69
Alignment gi|XP_594949.2| PREDICTED: ring finger protein 167 [Bos taurus]. 260 2e-69
Alignment gi|XP_002688963.1| PREDICTED: zinc and ring finger 4 [Bos tauru... 183 2e-46
Alignment gi|XP_595563.4| PREDICTED: zinc and ring finger 4 [Bos taurus]. 183 2e-46
Alignment gi|NP_001093178.1| goliath homolog [Bos taurus]. 81 1e-15
Alignment gi|XP_002691197.1| PREDICTED: ring finger protein 133-like [Bos... 70 3e-12
Alignment gi|XP_582694.4| PREDICTED: ring finger protein 133-like [Bos ta... 70 3e-12
Alignment gi|XP_871924.4| PREDICTED: ring finger protein 150 [Bos taurus]. 68 7e-12
>ref|NP_001069610.1| E3 ubiquitin-protein ligase RNF13 [Bos taurus].
Length = 380
Score = 530 bits (1364), Expect = e-150
Identities = 262/289 (90%), Positives = 268/289 (92%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPP++DNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPVRDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK +K+ SQ
Sbjct: 241 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>ref|NP_001069873.2| ring finger protein 167 [Bos taurus].
Length = 349
Score = 289 bits (739), Expect(2) = 6e-79
Identities = 138/246 (56%), Positives = 175/246 (71%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
P + A + NAS F DLPA FG L EGL+GFL+ + P+NAC PI PPP +
Sbjct: 21 PSRGLIRAISDHNASMDFADLPALFGAALSQEGLQGFLVEAHPDNACSPIAPPPPAPVNG 80
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M N E+ ++I IPSVFI
Sbjct: 81 SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
GE S+ L+ F YEKG ++LVP+ S PL YYLIPF MI + +Q R
Sbjct: 141 GERSSEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMIVRCIQHR 200
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
R +RNRL K+QLK++P H ++KGD+YDVCAICLDEYEDGDKLR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPW 260
Query: 980 LTKTKK 997
LT+T+K
Sbjct: 261 LTQTRK 266
Score = 24.6 bits (52), Expect(2) = 6e-79
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 991 QKTCPVCKQKV 1023
+KTCP+CKQ V
Sbjct: 265 RKTCPICKQPV 275
>ref|XP_002696473.1| PREDICTED: ring finger protein 167-like [Bos taurus].
Length = 353
Score = 260 bits (664), Expect = 2e-69
Identities = 124/246 (50%), Positives = 166/246 (67%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
PV + A + N S F DLPA FG L EGLKGFL+ ++P NAC PI PPP +
Sbjct: 21 PVRGLIRATSDHNGSMEFADLPALFGAALSPEGLKGFLVEAQPANACSPIAPPPPAQANG 80
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR DC FD KVL+AQ+AGY AA+VHNV+S++L++M ++ EV ++I IPSVFI
Sbjct: 81 SVFIALLRRFDCKFDLKVLHAQKAGYGAAVVHNVNSNELLNMVGSNEEVQQQIWIPSVFI 140
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
E S+ L+ F Y++G ++LVP+ Y+ I F +I ++ +
Sbjct: 141 SEKSSQYLRAFFIYQQGAQVLLVPDNGFLSTYFFILFYGILAMLILGTGAIVIVHWIHFQ 200
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
+ RN L K+QLK++P H +++GD YDVCAICLDEYEDGDKLR+LPC+HAYHC+CVDPW
Sbjct: 201 KQRWRNLLTKEQLKQIPTHDYRRGDRYDVCAICLDEYEDGDKLRVLPCAHAYHCRCVDPW 260
Query: 980 LTKTKK 997
LT+TKK
Sbjct: 261 LTQTKK 266
>ref|XP_594949.2| PREDICTED: ring finger protein 167 [Bos taurus].
Length = 353
Score = 260 bits (664), Expect = 2e-69
Identities = 124/246 (50%), Positives = 166/246 (67%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
PV + A + N S F DLPA FG L EGLKGFL+ ++P NAC PI PPP +
Sbjct: 21 PVRGLIRATSDHNGSMEFADLPALFGAALSPEGLKGFLVEAQPANACSPIAPPPPAQANG 80
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR DC FD KVL+AQ+AGY AA+VHNV+S++L++M ++ EV ++I IPSVFI
Sbjct: 81 SVFIALLRRFDCKFDLKVLHAQKAGYGAAVVHNVNSNELLNMVGSNEEVQQQIWIPSVFI 140
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
E S+ L+ F Y++G ++LVP+ Y+ I F +I ++ +
Sbjct: 141 SEKSSQYLRAFFIYQQGAQVLLVPDNGFLSTYFFILFYGILAMLILGTGAIVIVHWIHFQ 200
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
+ RN L K+QLK++P H +++GD YDVCAICLDEYEDGDKLR+LPC+HAYHC+CVDPW
Sbjct: 201 KQRWRNLLTKEQLKQIPTHDYRRGDRYDVCAICLDEYEDGDKLRVLPCAHAYHCRCVDPW 260
Query: 980 LTKTKK 997
LT+TKK
Sbjct: 261 LTQTKK 266
>ref|XP_002688963.1| PREDICTED: zinc and ring finger 4 [Bos taurus].
Length = 478
Score = 183 bits (464), Expect = 2e-46
Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 8/253 (3%)
Frame = +2
Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
L P +A V A N+S F D+PA FG L G++G+L+ +KP NAC PI P +
Sbjct: 142 LAPSQAVVRAVVDGNSSMVDFADMPALFGAPLAPGGVRGYLMEAKPANACHPIQGPRPGN 201
Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
S G IVLIRR DC FD KVL+AQRAG++AAIVHNV SDDL+ M ++ ++I IPS
Sbjct: 202 GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVRSDDLVRMAHVYEDLRQQIAIPS 260
Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
VF+GE+++ L+ +K H++L+P++ + P FV
Sbjct: 261 VFVGEAASQDLRVITRCDKAAHVVLLPDYPPHPDLDCHPVLAVSWVLGRALALLTSAVFV 320
Query: 791 QDR-------HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
R RA ++ ++ + F + + D+CAICLDEYE+GD+L++LPCSH
Sbjct: 321 LQRLWRWLWSWRASGQAVKAQATQRAQVRTFTRCN--DLCAICLDEYEEGDRLKVLPCSH 378
Query: 950 AYHCKCVDPWLTK 988
YHCKC+DPW ++
Sbjct: 379 TYHCKCIDPWFSQ 391
>ref|XP_595563.4| PREDICTED: zinc and ring finger 4 [Bos taurus].
Length = 480
Score = 183 bits (464), Expect = 2e-46
Identities = 103/253 (40%), Positives = 147/253 (58%), Gaps = 8/253 (3%)
Frame = +2
Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
L P +A V A N+S F D+PA FG L G++G+L+ +KP NAC PI P +
Sbjct: 144 LAPSQAVVRAVVDGNSSMVDFADMPALFGAPLAPGGVRGYLMEAKPANACHPIQGPRPGN 203
Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
S G IVLIRR DC FD KVL+AQRAG++AAIVHNV SDDL+ M ++ ++I IPS
Sbjct: 204 GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVRSDDLVRMAHVYEDLRQQIAIPS 262
Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
VF+GE+++ L+ +K H++L+P++ + P FV
Sbjct: 263 VFVGEAASQDLRVITRCDKAAHVVLLPDYPPHPDLDCHPVLAVSWVLGRALALLTSAVFV 322
Query: 791 QDR-------HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
R RA ++ ++ + F + + D+CAICLDEYE+GD+L++LPCSH
Sbjct: 323 LQRLWRWLWSWRASGQAVKAQATQRAQVRTFTRCN--DLCAICLDEYEEGDRLKVLPCSH 380
Query: 950 AYHCKCVDPWLTK 988
YHCKC+DPW ++
Sbjct: 381 TYHCKCIDPWFSQ 393
>ref|NP_001093178.1| goliath homolog [Bos taurus].
Length = 419
Score = 81.3 bits (199), Expect = 1e-15
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 23/253 (9%)
Frame = +2
Query: 299 ASQTFDDLPARFGYRLPAEGLKGFLINSKPENA------CEP----IVPPPLKDNSSGTF 448
A TF R+G P ++G ++ P + C+P VPP +K +
Sbjct: 50 APLTFRIDRGRYGLDSPKAEVRGQVLAPLPIHGVADHLGCDPQTRFFVPPNIKQ-----W 104
Query: 449 IVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDD----LISMGSNDIEVLKKIDIPSVF 616
I L++R +C F EK+ A A +++N S + + G+ DI + ++
Sbjct: 105 IALLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTGDIIAVMITELRGKD 164
Query: 617 IGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF--- 787
I ++ + T G + L + I F + I K
Sbjct: 165 ILSYLEKNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYT 224
Query: 788 -VQDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSH 949
+DR++ R K + KL KKGD ++D CA+C++ Y+ D +RILPC H
Sbjct: 225 NARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKH 284
Query: 950 AYHCKCVDPWLTK 988
+H CVDPWL++
Sbjct: 285 VFHKSCVDPWLSE 297
>ref|XP_002691197.1| PREDICTED: ring finger protein 133-like [Bos taurus].
Length = 393
Score = 70.1 bits (170), Expect = 3e-12
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Frame = +2
Query: 329 RFGYRLPAEGLKGFLINSKPEN----ACEP----IVPPPLKDNSSGTFIVLIRRLDCNFD 484
RFG P EG +G + + E+ CE +VP + ++ L+ R C F
Sbjct: 58 RFGDSSPKEGARGLVGVPRAEDRDPEGCEAGTRFLVPG---GQGAAPWVALVARGGCTFK 114
Query: 485 EKVLNAQRAGYKAAIVHNVDSDDLISM-----GSNDIEVLKKIDIPSVFIGESSANSLKD 649
EKVL A R A +++N + ++ G+ +I V+ I E +
Sbjct: 115 EKVLAAARRNASAVVLYNEERHGNLTAPMSHAGTGNIVVIMVSYPKGREIVELVQKDIPV 174
Query: 650 EFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRK 829
T G + + + + I F + I +F+ + RK
Sbjct: 175 TVTIGVGTRHVQEFISAQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQSHRK 234
Query: 830 DQLK---KLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
+ K +LP+H K G+ + + CA+C++ ++ D +RILPC H +H C+DPWL
Sbjct: 235 ETKKVIGQLPVHTVKHGEKGIDVDAESCAVCIENFKGRDVIRILPCKHIFHRICIDPWL 293
>ref|XP_582694.4| PREDICTED: ring finger protein 133-like [Bos taurus].
Length = 393
Score = 70.1 bits (170), Expect = 3e-12
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 21/239 (8%)
Frame = +2
Query: 329 RFGYRLPAEGLKGFLINSKPEN----ACEP----IVPPPLKDNSSGTFIVLIRRLDCNFD 484
RFG P EG +G + + E+ CE +VP + ++ L+ R C F
Sbjct: 58 RFGDSSPKEGARGLVGVPRAEDRDPEGCEAGTRFLVPG---GQGAAPWVALVARGGCTFK 114
Query: 485 EKVLNAQRAGYKAAIVHNVDSDDLISM-----GSNDIEVLKKIDIPSVFIGESSANSLKD 649
EKVL A R A +++N + ++ G+ +I V+ I E +
Sbjct: 115 EKVLAAARRNASAVVLYNEERHGNLTAPMSHAGTGNIVVIMVSYPKGREIVELVQKDIPV 174
Query: 650 EFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRK 829
T G + + + + I F + I +F+ + RK
Sbjct: 175 TVTIGVGTRHVQEFISAQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQSHRK 234
Query: 830 DQLK---KLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
+ K +LP+H K G+ + + CA+C++ ++ D +RILPC H +H C+DPWL
Sbjct: 235 ETKKVIGQLPVHTVKHGEKGIDVDAESCAVCIENFKGRDVIRILPCKHIFHRICIDPWL 293
>ref|XP_871924.4| PREDICTED: ring finger protein 150 [Bos taurus].
Length = 408
Score = 67.8 bits (164), Expect(2) = 7e-12
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Frame = +2
Query: 791 QDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAY 955
+DR++ R K + KL I KKGD ++D CA+C++ Y+ D +RILPC H +
Sbjct: 211 RDRNQRRLGDAAKKAISKLQIRTIKKGDKEMEPDFDNCAVCIEGYKPNDIVRILPCRHLF 270
Query: 956 HCKCVDPWL 982
H CVDPWL
Sbjct: 271 HKSCVDPWL 279
Score = 21.2 bits (43), Expect(2) = 7e-12
Identities = 5/13 (38%), Positives = 10/13 (76%)
Frame = +1
Query: 988 NQKTCPVCKQKVV 1026
+ +TCP+CK ++
Sbjct: 281 DHRTCPMCKMNIL 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,731,857
Number of extensions: 850393
Number of successful extensions: 2651
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2625
Number of HSP's successfully gapped: 41
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001080
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534303.1| PREDICTED: similar to RING finger protein 13 is... 528 e-150
Alignment gi|XP_865979.1| PREDICTED: similar to RING finger protein 13 is... 510 e-145
Alignment gi|XP_866005.1| PREDICTED: similar to RING finger protein 13 is... 487 e-138
Alignment gi|XP_865990.1| PREDICTED: similar to ring finger protein 13 is... 487 e-138
Alignment gi|XP_865960.1| PREDICTED: similar to RING finger protein 13 is... 454 e-128
Alignment gi|XP_546376.2| PREDICTED: similar to ring finger protein 167 [... 239 6e-64
Alignment gi|XP_546574.2| PREDICTED: similar to ring finger protein 167 [... 205 7e-53
Alignment gi|XP_542147.1| PREDICTED: similar to zinc and ring finger 4 [C... 182 6e-46
Alignment gi|XP_849454.1| PREDICTED: similar to ring finger protein 150 [... 80 2e-15
Alignment gi|XP_531881.2| PREDICTED: similar to ring finger protein 130 i... 69 1e-11
>ref|XP_534303.1| PREDICTED: similar to RING finger protein 13 isoform 1 [Canis
familiaris].
Length = 381
Score = 528 bits (1359), Expect = e-150
Identities = 262/289 (90%), Positives = 267/289 (92%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDI+VLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK +K+ SQ
Sbjct: 241 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>ref|XP_865979.1| PREDICTED: similar to RING finger protein 13 isoform 3 [Canis
familiaris].
Length = 414
Score = 510 bits (1314), Expect = e-145
Identities = 261/322 (81%), Positives = 267/322 (82%), Gaps = 33/322 (10%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSND---------------------------------IEVLKKIDIPS 610
VHNVDSDDLISMGSND ++VLKKIDIPS
Sbjct: 121 VHNVDSDDLISMGSNDSKVPRQVPYTEPASPSTCVSYGIIRVILLFFYTVDVLKKIDIPS 180
Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPF FMITKFV
Sbjct: 181 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFV 240
Query: 791 QDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCV 970
QDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCV
Sbjct: 241 QDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCV 300
Query: 971 DPWLTKTKKPVRSASKKLYLSQ 1036
DPWLTKTKK +K+ SQ
Sbjct: 301 DPWLTKTKKTCPVCKQKVVPSQ 322
>ref|XP_866005.1| PREDICTED: similar to RING finger protein 13 isoform 5 [Canis
familiaris].
Length = 352
Score = 487 bits (1254), Expect = e-138
Identities = 243/260 (93%), Positives = 246/260 (94%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDI+VLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSH 949
AICLDEYEDGDKLRILPCSH
Sbjct: 241 AICLDEYEDGDKLRILPCSH 260
>ref|XP_865990.1| PREDICTED: similar to ring finger protein 13 isoform 4 [Canis
familiaris].
Length = 268
Score = 487 bits (1254), Expect = e-138
Identities = 243/260 (93%), Positives = 246/260 (94%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDI+VLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSH 949
AICLDEYEDGDKLRILPCSH
Sbjct: 241 AICLDEYEDGDKLRILPCSH 260
>ref|XP_865960.1| PREDICTED: similar to RING finger protein 13 isoform 2 [Canis
familiaris].
Length = 354
Score = 454 bits (1167), Expect = e-128
Identities = 232/289 (80%), Positives = 237/289 (82%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSND + GHIILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDSKY---------------------------RGHIILVPEFSLPL 153
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 154 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 213
Query: 890 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK +K+ SQ
Sbjct: 214 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 262
>ref|XP_546376.2| PREDICTED: similar to ring finger protein 167 [Canis familiaris].
Length = 544
Score = 239 bits (611), Expect(2) = 6e-64
Identities = 117/246 (47%), Positives = 162/246 (65%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
P A V A + F DLPA FG L EGL+GFL+ ++P +AC + PPP +
Sbjct: 210 PARALVRASSAHRRRMDFADLPALFGAALSREGLEGFLVEARPPDACSAVAPPPPGAVNG 269
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR C+FD KVLNAQRAG+ AA+VHNV SD L+SM E ++I IPSVF+
Sbjct: 270 SVFIALLRRFGCDFDLKVLNAQRAGFGAAVVHNVHSDALLSMVRGGAEAQQQIAIPSVFV 329
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
GE SA+ L+ F Y+KG ++LVP+ +L L Y LIPF ++ +FV+ +
Sbjct: 330 GERSADYLRALFVYDKGAQVLLVPDDNLLLGYCLIPFTGVVGLLLVASGAGLVVRFVRHQ 389
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
R RR+RL ++QL+++P +++G DVCAICLD YE G++LR+LPC+HAYH +CVDPW
Sbjct: 390 GRLRRSRLTREQLERIPTRDYQRGAPDDVCAICLDAYEVGERLRVLPCAHAYHSRCVDPW 449
Query: 980 LTKTKK 997
LT+T++
Sbjct: 450 LTQTRR 455
Score = 23.9 bits (50), Expect(2) = 6e-64
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 991 QKTCPVCKQKV 1023
++TCPVCKQ V
Sbjct: 454 RRTCPVCKQPV 464
>ref|XP_546574.2| PREDICTED: similar to ring finger protein 167 [Canis familiaris].
Length = 250
Score = 205 bits (521), Expect = 7e-53
Identities = 103/205 (50%), Positives = 135/205 (65%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
P A + A + NAS F DLPA FG L EGL+GFL+ + P NAC PI PPP +
Sbjct: 21 PARALIRATSDHNASMDFADLPALFGAALSQEGLQGFLVEAHPANACSPIAPPPPAPVNG 80
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M N E+ ++I IPSVFI
Sbjct: 81 SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
GE S+ L+ F YEKG ++LVP+ S PL YYLIPF M+ + +Q R
Sbjct: 141 GERSSEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMVVRCIQHR 200
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGD 874
R +RNRL K+QLK++P H ++KG+
Sbjct: 201 KRLQRNRLSKEQLKQIPTHDYQKGE 225
>ref|XP_542147.1| PREDICTED: similar to zinc and ring finger 4 [Canis familiaris].
Length = 363
Score = 182 bits (461), Expect = 6e-46
Identities = 104/256 (40%), Positives = 149/256 (58%), Gaps = 8/256 (3%)
Frame = +2
Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
L+P EA V A NAS F DLPA FG L +G++G+L+ +KP NAC PI P +
Sbjct: 23 LVPSEALVRAVLDGNASTVDFADLPALFGLPLAPDGVRGYLMEAKPANACHPIEGPRPGN 82
Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
S G IVLIRR DC FD KVL+AQRAG++AAIVHNV SD+L+ M ++ ++I IPS
Sbjct: 83 GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVRSDELVRMAHVYEDLRRQIAIPS 141
Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
VF+GE+++ L+ +K H++L+P++ + P FV
Sbjct: 142 VFVGEAASQDLRVIVRCDKAAHVLLLPDYPPCPDLDCHPVLAISWVLGRALALLTSVLFV 201
Query: 791 QDR-------HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
+ R ++ ++ + F + + D+CAICLDEYE+GD+L+ILPCSH
Sbjct: 202 LRQLWNWLWAWWTRGPAVKPQPCQRAQVRTFTRRN--DLCAICLDEYEEGDQLKILPCSH 259
Query: 950 AYHCKCVDPWLTKTKK 997
YHCKC+DPW ++ +
Sbjct: 260 TYHCKCIDPWFSQAAR 275
>ref|XP_849454.1| PREDICTED: similar to ring finger protein 150 [Canis familiaris].
Length = 855
Score = 79.7 bits (195), Expect(2) = 2e-15
Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 20/238 (8%)
Frame = +2
Query: 329 RFGYRLPAEGLKGFLINSKPEN---ACEPIV--PPPLKDNSSGTFIVLIRRLDCNFDEKV 493
R+G P + +G ++ + + AC+P P + S +I LI + +C + +K+
Sbjct: 493 RYGEHSPKQDARGQVVMASAAHDRLACDPGTRFAAPGRGRS---WIALIPKGNCTYRDKI 549
Query: 494 LNAQRAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK 667
NA A ++ NV S +D ++M +E + I IP G+ + L+ T
Sbjct: 550 RNAFLQNASAVVIFNVGSGTNDTVTMSHAGVEDIVAIMIPEPK-GKEIVSLLERNITVTM 608
Query: 668 ----GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNRL 823
G + + + I F + I +F +DR++ R
Sbjct: 609 YITIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDA 668
Query: 824 RKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
K + KL + KKGD ++D CA+C++ Y+ D +RILPC H +H CVDPWL
Sbjct: 669 AKKAISKLQVRTIKKGDKETEPDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 726
Score = 21.2 bits (43), Expect(2) = 2e-15
Identities = 5/13 (38%), Positives = 10/13 (76%)
Frame = +1
Query: 988 NQKTCPVCKQKVV 1026
+ +TCP+CK ++
Sbjct: 728 DHRTCPMCKMNIL 740
>ref|XP_531881.2| PREDICTED: similar to ring finger protein 130 isoform 1 [Canis
familiaris].
Length = 235
Score = 68.6 bits (166), Expect = 1e-11
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Frame = +2
Query: 791 QDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAY 955
+DR++ R K + KL KKGD ++D CA+C++ Y+ D +RILPC H +
Sbjct: 43 RDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVF 102
Query: 956 HCKCVDPWLTK 988
H CVDPWL++
Sbjct: 103 HKSCVDPWLSE 113
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,392,192
Number of extensions: 881795
Number of successful extensions: 2913
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 2891
Number of HSP's successfully gapped: 50
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001080
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_899237.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens]. 527 e-150
Alignment gi|NP_009213.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens]. 527 e-150
Alignment gi|NP_056343.1| E3 ubiquitin-protein ligase RNF167 precursor [H... 288 1e-78
Alignment gi|NP_859061.3| zinc/RING finger protein 4 precursor [Homo sapi... 185 7e-47
Alignment gi|NP_060904.2| E3 ubiquitin-protein ligase RNF130 precursor [H... 81 1e-15
Alignment gi|NP_065775.1| RING finger protein 150 precursor [Homo sapiens]. 79 4e-15
Alignment gi|NP_932351.1| RING finger protein 148 precursor [Homo sapiens]. 72 1e-12
Alignment gi|NP_078815.3| E3 ubiquitin-protein ligase RNF128 isoform 2 [H... 72 1e-12
Alignment gi|NP_631914.1| E3 ubiquitin-protein ligase RNF133 [Homo sapien... 69 7e-12
Alignment gi|NP_899196.1| E3 ubiquitin-protein ligase RLIM [Homo sapiens]. 66 6e-11
>ref|NP_899237.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens].
Length = 381
Score = 527 bits (1357), Expect = e-150
Identities = 261/289 (90%), Positives = 267/289 (92%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPP+KDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGH+ILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK +K+ SQ
Sbjct: 241 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>ref|NP_009213.1| E3 ubiquitin-protein ligase RNF13 [Homo sapiens].
Length = 381
Score = 527 bits (1357), Expect = e-150
Identities = 261/289 (90%), Positives = 267/289 (92%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTFDDLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFDDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPP+KDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGH+ILVPEFSLPL
Sbjct: 121 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHLILVPEFSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHRARRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK +K+ SQ
Sbjct: 241 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>ref|NP_056343.1| E3 ubiquitin-protein ligase RNF167 precursor [Homo sapiens].
Length = 350
Score = 288 bits (737), Expect(2) = 1e-78
Identities = 137/246 (55%), Positives = 175/246 (71%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
P + A + NAS F DLPA FG L EGL+GFL+ + P+NAC PI PPP +
Sbjct: 21 PTRGLIRATSDHNASMDFADLPALFGATLSQEGLQGFLVEAHPDNACSPIAPPPPAPVNG 80
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M N E+ ++I IPSVFI
Sbjct: 81 SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
GE S+ L+ F YEKG ++LVP+ + PL YYLIPF MI + +Q R
Sbjct: 141 GERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGIVGLLVLAMGAVMIARCIQHR 200
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
R +RNRL K+QLK++P H ++KGD+YDVCAICLDEYEDGDKLR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPW 260
Query: 980 LTKTKK 997
LT+T+K
Sbjct: 261 LTQTRK 266
Score = 24.6 bits (52), Expect(2) = 1e-78
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 991 QKTCPVCKQKV 1023
+KTCP+CKQ V
Sbjct: 265 RKTCPICKQPV 275
>ref|NP_859061.3| zinc/RING finger protein 4 precursor [Homo sapiens].
Length = 429
Score = 185 bits (469), Expect = 7e-47
Identities = 111/274 (40%), Positives = 152/274 (55%), Gaps = 15/274 (5%)
Frame = +2
Query: 221 ILTVQLFAFLNLL--PVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPE 391
++ V+ L+LL P +A V A +N+S F DLPA FG L EG++G+L+ KP
Sbjct: 80 LVAVKALLVLSLLQVPAQAVVRAVLEDNSSSVDFADLPALFGVPLAPEGIRGYLMEVKPA 139
Query: 392 NACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGS 571
NAC PI P L + S G IVLIRR DC FD KVLNAQRAG++AAIVHNV SDDL+SM
Sbjct: 140 NACHPIEAPRLGNRSLGA-IVLIRRYDCTFDLKVLNAQRAGFEAAIVHNVHSDDLVSMTH 198
Query: 572 NDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXX 751
++ +I IPSVF+ E+++ L+ K H +L+P+ + P
Sbjct: 199 VYEDLRGQIAIPSVFVSEAASQDLRVILGCNKSAHALLLPDDPPCHDLGCHPVLTVSWVL 258
Query: 752 XXXXXXFMITKFV------------QDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAI 895
+ FV R + + +K Q++ H D+CAI
Sbjct: 259 GCTLALVVSAFFVLNHLWLWAQACCSHRRPVKTSTCQKAQVRTFTWHN-------DLCAI 311
Query: 896 CLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 997
CLDEYE+GD+L+ILPCSH YHCKC+DPW ++ +
Sbjct: 312 CLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPR 345
>ref|NP_060904.2| E3 ubiquitin-protein ligase RNF130 precursor [Homo sapiens].
Length = 419
Score = 81.3 bits (199), Expect = 1e-15
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 23/253 (9%)
Frame = +2
Query: 299 ASQTFDDLPARFGYRLPAEGLKGFLINSKPENA------CEP----IVPPPLKDNSSGTF 448
A TF R+G P ++G ++ P + C+P VPP +K +
Sbjct: 50 APLTFRIDRGRYGLDSPKAEVRGQVLAPLPLHGVADHLGCDPQTRFFVPPNIKQ-----W 104
Query: 449 IVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDD----LISMGSNDIEVLKKIDIPSVF 616
I L++R +C F EK+ A A +++N S + + G+ DI + ++
Sbjct: 105 IALLQRGNCTFKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTGDIIAVMITELRGKD 164
Query: 617 IGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF--- 787
I ++ + T G + L + I F + I K
Sbjct: 165 ILSYLEKNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYT 224
Query: 788 -VQDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSH 949
+DR++ R K + KL KKGD ++D CA+C++ Y+ D +RILPC H
Sbjct: 225 NARDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKH 284
Query: 950 AYHCKCVDPWLTK 988
+H CVDPWL++
Sbjct: 285 VFHKSCVDPWLSE 297
>ref|NP_065775.1| RING finger protein 150 precursor [Homo sapiens].
Length = 438
Score = 79.0 bits (193), Expect(2) = 4e-15
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 21/239 (8%)
Frame = +2
Query: 329 RFGYRLPAEGLKGFLINSKPEN---ACEP---IVPPPLKDNSSGTFIVLIRRLDCNFDEK 490
R+G P + +G ++ + + AC+P P N +I LI + +C + +K
Sbjct: 76 RYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPTRGKN----WIALIPKGNCTYRDK 131
Query: 491 VLNAQRAGYKAAIVHNVDSD--DLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYE 664
+ NA A ++ NV S+ + I+M +E + I IP G+ + L+ T
Sbjct: 132 IRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPK-GKEIVSLLERNITVT 190
Query: 665 K----GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNR 820
G + + + I F + I +F +DR++ R
Sbjct: 191 MYITIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGD 250
Query: 821 LRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
K + KL I KKGD ++D CA+C++ Y+ D +RILPC H +H CVDPWL
Sbjct: 251 AAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 309
Score = 21.2 bits (43), Expect(2) = 4e-15
Identities = 5/13 (38%), Positives = 10/13 (76%)
Frame = +1
Query: 988 NQKTCPVCKQKVV 1026
+ +TCP+CK ++
Sbjct: 311 DHRTCPMCKMNIL 323
>ref|NP_932351.1| RING finger protein 148 precursor [Homo sapiens].
Length = 305
Score = 71.6 bits (174), Expect = 1e-12
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 19/236 (8%)
Frame = +2
Query: 332 FGYRLPAEGLKGF--LINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQ 505
FG P E + G L +NAC P+ + + +++ LI R C F K+ A
Sbjct: 62 FGNHSPLERVSGVVALPEGWNQNACHPLTNFS-RPKQADSWLALIERGGCTFTHKINVAA 120
Query: 506 RAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHI 679
G I++N + M E +I +V I S+ ++ + +KG ++
Sbjct: 121 EKGANGVIIYNYQGTGSKVFPMSHQGTE-----NIVAVMI--SNLKGMEILHSIQKGVYV 173
Query: 680 ILVPEFS-LPLEY------YLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQL 838
++ E + +++ YL F + +T V + RR++++ D
Sbjct: 174 TVIIEVGRMHMQWVSHYIMYLFTFLAATIAYFYLDCVWRLTPRVPNSFTRRRSQIKTDVK 233
Query: 839 K---KLPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
K +L + K+GDE D C +C D Y+ D +RIL C H +H C+DPWL
Sbjct: 234 KAIDQLQLRVLKEGDEELDLNEDNCVVCFDTYKPQDVVRILTCKHFFHKACIDPWL 289
>ref|NP_078815.3| E3 ubiquitin-protein ligase RNF128 isoform 2 [Homo sapiens].
Length = 402
Score = 71.6 bits (174), Expect = 1e-12
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 20/204 (9%)
Frame = +2
Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLK--KIDI 604
N+ +I LI R +C F EK+ A R A +++N G+ I++ +DI
Sbjct: 86 NTKKPWIALIERGNCTFSEKIQTAGRRNADAVVIYNAPET-----GNQTIQMANFGAVDI 140
Query: 605 PSVFIGESSANSLKDEFTYEKGGHIILVPEFS---------LPLEYYLIPFXXXXXXXXX 757
++ IG + ++G + +V E + + + F
Sbjct: 141 VAIMIGNLKGTKILQSI--QRGIQVTMVIEVGKKHGPWVNHYSIFFVSVSFFIITAATVG 198
Query: 758 XXXXFMITKFVQDRHRARRNRLRKDQLKK----LPIHKFKKGDEY-----DVCAICLDEY 910
+ + R ++R+ R K KK L + K+GD+ D CA+C++ Y
Sbjct: 199 YFIFYSARRLRNARAQSRKQRQLKADAKKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELY 258
Query: 911 EDGDKLRILPCSHAYHCKCVDPWL 982
+ D +RIL C+H +H CVDPWL
Sbjct: 259 KPNDLVRILTCNHIFHKTCVDPWL 282
>ref|NP_631914.1| E3 ubiquitin-protein ligase RNF133 [Homo sapiens].
Length = 376
Score = 68.9 bits (167), Expect = 7e-12
Identities = 64/231 (27%), Positives = 94/231 (40%), Gaps = 15/231 (6%)
Frame = +2
Query: 335 GYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAG 514
G +P EG K +NAC P + S T++ LI R C F +K+ A G
Sbjct: 73 GVIVPPEG--------KIQNACNPNTIFS-RSKYSETWLALIERGGCTFTQKIKVATEKG 123
Query: 515 YKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILV 688
I++NV + + M E D+ V IG + +KG I V
Sbjct: 124 ASGVIIYNVPGTGNQVFPMFHQAFE-----DVVVVMIGNLKGTEIFH--LIKKGVLITAV 176
Query: 689 PEFS----LPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARR-NRLRKD---QLKK 844
E + + +YL+ F + I + R + RR RL D +
Sbjct: 177 VEVGRKHIIWMNHYLVSFVIVTTATLAYFIFYHIHRLCLARIQNRRWQRLTTDLQNTFGQ 236
Query: 845 LPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
L + K+GDE D C IC + Y+ D +RIL C H +H C+DPW+
Sbjct: 237 LQLRVVKEGDEEINPNGDSCVICFERYKPNDIVRILTCKHFFHKNCIDPWI 287
>ref|NP_899196.1| E3 ubiquitin-protein ligase RLIM [Homo sapiens].
Length = 624
Score = 65.9 bits (159), Expect = 6e-11
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = +2
Query: 821 LRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTK 988
L K+Q+ L + F + D C++C+ EY +G+KLR LPCSH YH C+D WL++
Sbjct: 548 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 603
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,824,273
Number of extensions: 878292
Number of successful extensions: 2832
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 2808
Number of HSP's successfully gapped: 39
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001080
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106884.1| E3 ubiquitin-protein ligase RNF13 isoform a ... 518 e-147
Alignment gi|NP_036013.1| E3 ubiquitin-protein ligase RNF13 isoform b [Mu... 478 e-135
Alignment gi|NP_081721.1| E3 ubiquitin-protein ligase RNF167 precursor [M... 292 5e-80
Alignment gi|NP_035613.2| zinc and ring finger 4 [Mus musculus]. 103 2e-22
Alignment gi|NP_067515.2| E3 ubiquitin-protein ligase RNF130 precursor [M... 80 2e-15
Alignment gi|NP_796352.2| RING finger protein 150 precursor [Mus musculus]. 77 1e-14
Alignment gi|NP_001028307.2| E3 ubiquitin-protein ligase RNF149 precursor... 70 2e-12
Alignment gi|NP_082030.1| ring finger protein 148 [Mus musculus]. 67 2e-11
Alignment gi|NP_035406.3| E3 ubiquitin-protein ligase RLIM [Mus musculus]. 67 3e-11
Alignment gi|NP_075759.3| E3 ubiquitin-protein ligase RNF128 precursor [M... 67 3e-11
>ref|NP_001106884.1| E3 ubiquitin-protein ligase RNF13 isoform a [Mus musculus].
Length = 381
Score = 518 bits (1335), Expect = e-147
Identities = 257/289 (88%), Positives = 264/289 (91%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTF+DLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFEDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDI+ LKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPE SLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDTLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPELSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHR RRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPVRSASKKLYLSQ 1036
AICL+EYEDGDKLRILPCSHAYHCKCVDPWLTKTKK +K+ SQ
Sbjct: 241 AICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289
>ref|NP_036013.1| E3 ubiquitin-protein ligase RNF13 isoform b [Mus musculus].
Length = 268
Score = 478 bits (1230), Expect = e-135
Identities = 238/260 (91%), Positives = 243/260 (93%)
Frame = +2
Query: 170 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLP 349
MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEAD+LAYNFENASQTF+DLPARFGYRLP
Sbjct: 1 MLLSIGMLMLSATQVYTILTVQLFAFLNLLPVEADILAYNFENASQTFEDLPARFGYRLP 60
Query: 350 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAI 529
AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFD KVLNAQRAGYKAAI
Sbjct: 61 AEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAI 120
Query: 530 VHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPL 709
VHNVDSDDLISMGSNDI+ LKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPE SLPL
Sbjct: 121 VHNVDSDDLISMGSNDIDTLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPELSLPL 180
Query: 710 EYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVC 889
EYYLIPF FMITKFVQDRHR RRNRLRKDQLKKLP+HKFKKGDEYDVC
Sbjct: 181 EYYLIPFLIIVGICLILIVIFMITKFVQDRHRNRRNRLRKDQLKKLPVHKFKKGDEYDVC 240
Query: 890 AICLDEYEDGDKLRILPCSH 949
AICL+EYEDGDKLRILPCSH
Sbjct: 241 AICLEEYEDGDKLRILPCSH 260
>ref|NP_081721.1| E3 ubiquitin-protein ligase RNF167 precursor [Mus musculus].
Length = 347
Score = 292 bits (748), Expect(2) = 5e-80
Identities = 141/246 (57%), Positives = 176/246 (71%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
PV + A + NAS F DLPA FG L EGL+GFL+ + PENAC PI PPP +
Sbjct: 21 PVRGLIRATSEHNASMDFADLPALFGATLSDEGLQGFLVEAHPENACGPIAPPPSAPVNG 80
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M N E+ ++I IPSVFI
Sbjct: 81 SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
GE SA L+ F YEKG ++LVP+ S PL YYLIPF +I + +Q R
Sbjct: 141 GERSAEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGTVLIVRCIQHR 200
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
R +RNRL K+QLK++P H ++KGDEYDVCAICLDEYEDGDKLR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPW 260
Query: 980 LTKTKK 997
LT+T+K
Sbjct: 261 LTQTRK 266
Score = 24.6 bits (52), Expect(2) = 5e-80
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 991 QKTCPVCKQKV 1023
+KTCP+CKQ V
Sbjct: 265 RKTCPICKQPV 275
>ref|NP_035613.2| zinc and ring finger 4 [Mus musculus].
Length = 327
Score = 103 bits (258), Expect = 2e-22
Identities = 77/267 (28%), Positives = 125/267 (46%)
Frame = +2
Query: 188 MLMLSATQVYTILTVQLFAFLNLLPVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKG 367
M + T+V + V + L+L P +A V +S F DLPA G + + +G
Sbjct: 1 MARFAWTRVAPVALVTFWLVLSLSPTDAQV-----NLSSVDFLDLPALLGVPVDPKRARG 55
Query: 368 FLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDS 547
+L+ ++P +AC I P DN S +VL+R L C++++ AQRAG AA V
Sbjct: 56 YLLVARPADACHAI-EGPWPDNHSLDPLVLVRPLGCSWEQTGRRAQRAGATAASVGPEAP 114
Query: 548 DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIP 727
L D+EV + D P+ + + E H ++V ++L L
Sbjct: 115 GQLREF--EDLEVTVRCDQPARVLLPHAEPCPDPEC------HPVVVASWALARALALAA 166
Query: 728 FXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDE 907
+ +R ++ +K + F + D+CAICLD+
Sbjct: 167 STLFVLRQLWPWVRGL---------GSRGTAVKTQTCQKAQVRTFTRLS--DLCAICLDD 215
Query: 908 YEDGDKLRILPCSHAYHCKCVDPWLTK 988
YE+G++L+ILPC+HAYHC+C+DPW ++
Sbjct: 216 YEEGERLKILPCAHAYHCRCIDPWFSR 242
>ref|NP_067515.2| E3 ubiquitin-protein ligase RNF130 precursor [Mus musculus].
Length = 419
Score = 80.5 bits (197), Expect = 2e-15
Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 23/243 (9%)
Frame = +2
Query: 329 RFGYRLPAEGLKGFLINSKPENA------CEP----IVPPPLKDNSSGTFIVLIRRLDCN 478
R+G P ++G ++ P + C+P VPP +K +I L++R +C
Sbjct: 60 RYGLDSPKAEVRGQVLAPLPIHGVADHLGCDPQTRFFVPPNIKQ-----WIALLQRGNCT 114
Query: 479 FDEKVLNAQRAGYKAAIVHNVDSDD----LISMGSNDIEVLKKIDIPSVFIGESSANSLK 646
F EK+ A A +++N S + + G+ DI + ++ I ++
Sbjct: 115 FKEKISRAAFHNAVAVVIYNNKSKEEPVTMTHPGTGDIIAVMITELRGKDILSYLEKNIS 174
Query: 647 DEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARR 814
+ T G + L + I F + I K +DR++ R
Sbjct: 175 VQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYTNARDRNQRRL 234
Query: 815 NRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
K + KL KKGD ++D CA+C++ Y+ D +R+LPC H +H CVDPW
Sbjct: 235 GDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPW 294
Query: 980 LTK 988
L++
Sbjct: 295 LSE 297
>ref|NP_796352.2| RING finger protein 150 precursor [Mus musculus].
Length = 437
Score = 76.6 bits (187), Expect(2) = 1e-14
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 18/236 (7%)
Frame = +2
Query: 329 RFGYRLPAEGLKGFLI---NSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLN 499
R+G P + +G ++ +++ AC+P + +I LI + +C + +K+ N
Sbjct: 75 RYGEHSPKQDARGEVVMASSAQDRLACDPNTKFAAPAHGKH-WIALIPKGNCTYRDKIRN 133
Query: 500 AQRAGYKAAIVHNVDSD--DLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK-- 667
A A ++ NV S+ + I+M +E + I IP G+ + L+ T
Sbjct: 134 AFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPK-GKEIVSLLERNITVTMYI 192
Query: 668 --GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNRLRK 829
G + + + I F + I +F +DR++ R K
Sbjct: 193 TIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAK 252
Query: 830 DQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
+ KL + +KGD ++D CA+C++ Y+ D +RILPC H +H CVDPWL
Sbjct: 253 KAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 308
Score = 21.2 bits (43), Expect(2) = 1e-14
Identities = 5/13 (38%), Positives = 10/13 (76%)
Frame = +1
Query: 988 NQKTCPVCKQKVV 1026
+ +TCP+CK ++
Sbjct: 310 DHRTCPMCKMNIL 322
>ref|NP_001028307.2| E3 ubiquitin-protein ligase RNF149 precursor [Mus musculus].
Length = 394
Score = 70.5 bits (171), Expect = 2e-12
Identities = 64/252 (25%), Positives = 102/252 (40%), Gaps = 34/252 (13%)
Frame = +2
Query: 329 RFG---YRLPAEGLKGFLINSKPENACEP---IVPPPLKDNSSGTFIVLIRRLDCNFDEK 490
RFG R +GL G P C P V P N+ ++ L+ R C F +K
Sbjct: 62 RFGESSLREERQGLVGVPRAPAPAEGCAPDTRFVAPGALGNAP--WVALVARGGCTFKDK 119
Query: 491 VLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKG 670
VL A R A +V+N++S+ N E + + N + +Y KG
Sbjct: 120 VLAAARRNASAVVVYNLESN------GNATEPMSHA---------GTGNIVVIMISYPKG 164
Query: 671 GHIILVPEFSLPLE--------------------YYLIPFXXXXXXXXXXXXXFMITKFV 790
I + + +P++ + I F + I +F+
Sbjct: 165 REIFDLVQKGIPVKMRIEIGTRHMQEFISGQSVVFVAIAFITMMIISLAWLIFYYIQRFL 224
Query: 791 QDRHRARRNRLRKDQLK---KLPIHKFKKGDE-YDV----CAICLDEYEDGDKLRILPCS 946
+ RK+ K +LP+H K G++ DV CA+C++ ++ D +RILPC
Sbjct: 225 YTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCK 284
Query: 947 HAYHCKCVDPWL 982
H +H C+DPWL
Sbjct: 285 HIFHRICIDPWL 296
>ref|NP_082030.1| ring finger protein 148 [Mus musculus].
Length = 316
Score = 67.4 bits (163), Expect = 2e-11
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 17/234 (7%)
Frame = +2
Query: 332 FGYRLPAEGLKGFLINSKP--ENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQ 505
FG P E + G ++ + +NAC P+ D + T++ LI R C F K+ A
Sbjct: 75 FGNHSPLERVSGAVVLPEGWNQNACSPLTNFSRPDQTD-TWLALIERGGCTFTHKINLAA 133
Query: 506 RAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHI 679
G I++N + + M E +I +V IG L ++G ++
Sbjct: 134 EKGANGVIIYNYPGTGNKVFPMSHQGTE-----NIVAVMIGNLKGMELLH--LIQQGVYV 186
Query: 680 ILVPEFS---LP-LEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKK- 844
++ E +P L +Y++ + + RR R K +KK
Sbjct: 187 TIIIEVGRMHMPWLSHYVMSLFTFLAATVTYLFLYCAWRPRVSNSSTRRQRQLKADVKKA 246
Query: 845 ---LPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
L + + GD+ D C +C D Y+ D +RIL C H +H C+DPWL
Sbjct: 247 IGQLQLRVLQDGDKELDPNEDSCVVCFDMYKAQDVIRILTCKHFFHKTCIDPWL 300
>ref|NP_035406.3| E3 ubiquitin-protein ligase RLIM [Mus musculus].
Length = 600
Score = 66.6 bits (161), Expect = 3e-11
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +2
Query: 770 FMITKFVQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSH 949
F++ + +D+ R L K+Q+ L + F + D C++C+ EY +G+KLR LPCSH
Sbjct: 511 FLLNEDDEDQPRG----LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSH 566
Query: 950 AYHCKCVDPWLTK 988
YH C+D WL++
Sbjct: 567 EYHVHCIDRWLSE 579
>ref|NP_075759.3| E3 ubiquitin-protein ligase RNF128 precursor [Mus musculus].
Length = 428
Score = 66.6 bits (161), Expect = 3e-11
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 23/240 (9%)
Frame = +2
Query: 332 FGYRLPAEGLKGFLINSKPE---NACEP----IVPPPLKDNSSGTFIVLIRRLD-CNFDE 487
+G P E + G L+ NAC P VP +++ LI+R C F +
Sbjct: 71 YGQDSPLEPVSGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFAD 130
Query: 488 KVLNAQRAGYKAAIVHNVDS--DDLISM---GSNDIEVLKKIDIPSVFIGESSANSLKDE 652
K+ A G A++ N +++I M G+ DI + ++ I +S ++
Sbjct: 131 KIHLASERGASGAVIFNFPGTRNEVIPMSHPGAGDIVAIMIGNLKGTKILQSIQRGIQVT 190
Query: 653 FTYEKGG-HIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRK 829
E G H V +S+ + + F + + R ++R+ R K
Sbjct: 191 MVIEVGKKHGPWVNHYSI--FFVSVSFFIITAATVGYFIFYSARRLRNARAQSRKQRQLK 248
Query: 830 DQLKK----LPIHKFKKGDEY-----DVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
KK L + K+GD+ D CA+C++ Y+ D +RIL C+H +H CVDPWL
Sbjct: 249 ADAKKAIGKLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWL 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,613,795
Number of extensions: 748522
Number of successful extensions: 2218
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 32
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001080
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358656.1| PREDICTED: e3 ubiquitin-protein ligase RNF13... 464 e-131
Alignment gi|XP_003131954.1| PREDICTED: e3 ubiquitin-protein ligase RNF16... 288 5e-79
Alignment gi|XP_003123129.1| PREDICTED: zinc/RING finger protein 4-like [... 191 7e-49
Alignment gi|XP_003357062.1| PREDICTED: RING finger protein 150 [Sus scro... 79 2e-15
Alignment gi|XP_001924902.3| PREDICTED: e3 ubiquitin-protein ligase RLIM-... 68 5e-12
Alignment gi|XP_003123692.2| PREDICTED: e3 ubiquitin-protein ligase RNF13... 69 6e-12
Alignment gi|XP_003135236.1| PREDICTED: e3 ubiquitin-protein ligase RLIM ... 66 4e-11
Alignment gi|XP_003360418.1| PREDICTED: e3 ubiquitin-protein ligase RLIM ... 66 4e-11
Alignment gi|XP_003134781.1| PREDICTED: RING finger protein 148-like [Sus... 63 2e-10
Alignment gi|XP_001925877.2| PREDICTED: zinc/RING finger protein 3 [Sus s... 62 4e-10
>ref|XP_003358656.1| PREDICTED: e3 ubiquitin-protein ligase RNF13-like [Sus scrofa].
Length = 396
Score = 464 bits (1195), Expect = e-131
Identities = 228/251 (90%), Positives = 230/251 (91%)
Frame = +2
Query: 284 YNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIR 463
YNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIR
Sbjct: 54 YNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIR 113
Query: 464 RLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSL 643
RLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSL
Sbjct: 114 RLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFIGESSANSL 173
Query: 644 KDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRL 823
KDEFTYEKGGHIILVPEFSLPLEYYLIPF FMITKFVQDRHRARRNRL
Sbjct: 174 KDEFTYEKGGHIILVPEFSLPLEYYLIPFLIIVGICLILIVIFMITKFVQDRHRARRNRL 233
Query: 824 RKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKPV 1003
RKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK
Sbjct: 234 RKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTC 293
Query: 1004 RSASKKLYLSQ 1036
+K+ SQ
Sbjct: 294 PVCKQKVVPSQ 304
>ref|XP_003131954.1| PREDICTED: e3 ubiquitin-protein ligase RNF167-like [Sus scrofa].
Length = 350
Score = 288 bits (738), Expect(2) = 5e-79
Identities = 137/246 (55%), Positives = 176/246 (71%)
Frame = +2
Query: 260 PVEADVLAYNFENASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSS 439
P + + A + NAS F DLPA FG L EGL+GFL+ + P+NAC PI PPP +
Sbjct: 21 PSQGLIRAISDHNASMDFADLPALFGAALSQEGLQGFLVEAHPDNACSPIAPPPPAPVNG 80
Query: 440 GTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPSVFI 619
FI L+RR DCNFD KVLNAQ+AGY AA+VHNV+S++L++M N E+ ++I IPSVFI
Sbjct: 81 SVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI 140
Query: 620 GESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFVQDR 799
GE S+ L+ F YEKG ++LVP+ S PL YYLIPF MI + +Q R
Sbjct: 141 GERSSQYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLAMGAVMIVRCIQHR 200
Query: 800 HRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPW 979
R +RNRL K+QLK++P H ++KGD+YDVCAICLDEYEDGD+LR+LPC+HAYH +CVDPW
Sbjct: 201 KRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDRLRVLPCAHAYHSRCVDPW 260
Query: 980 LTKTKK 997
LT+T+K
Sbjct: 261 LTQTRK 266
Score = 24.6 bits (52), Expect(2) = 5e-79
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 991 QKTCPVCKQKV 1023
+KTCP+CKQ V
Sbjct: 265 RKTCPICKQPV 275
>ref|XP_003123129.1| PREDICTED: zinc/RING finger protein 4-like [Sus scrofa].
Length = 360
Score = 191 bits (484), Expect = 7e-49
Identities = 109/257 (42%), Positives = 152/257 (59%), Gaps = 9/257 (3%)
Frame = +2
Query: 254 LLPVEADVLAYNFENASQT-FDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKD 430
L+P +A V A N+S F DLPA FG L EG++G+LI +KP NAC PI P L +
Sbjct: 24 LVPAQAVVRAVLDGNSSTVDFADLPALFGVPLAPEGVRGYLIEAKPANACHPIEGPQLGN 83
Query: 431 NSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSNDIEVLKKIDIPS 610
S G IVLIRR DC FD KVL+AQRAG++AAIVHNV SDDL+ MG ++ ++I IPS
Sbjct: 84 GSLGA-IVLIRRYDCTFDLKVLHAQRAGFEAAIVHNVHSDDLVRMGHVYEDLRRQIAIPS 142
Query: 611 VFIGESSANSLKDEFTYEKGGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKFV 790
VF+GE+++ L+ +K H++L+P++ + P FV
Sbjct: 143 VFMGEAASQDLRAIVRCDKSAHVLLLPDYPPCPDLDCHPVLAVSWVLGRTLALLTSAVFV 202
Query: 791 QDRHR--------ARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCS 946
RH R ++ ++ + F + + D+CAICLDEYE+GD+L+ILPCS
Sbjct: 203 L-RHLWNWLWAWWTREPPVKAPAGQRAQVRTFTRRN--DLCAICLDEYEEGDRLKILPCS 259
Query: 947 HAYHCKCVDPWLTKTKK 997
H YHCKC+DPW ++ +
Sbjct: 260 HTYHCKCIDPWFSQAAR 276
>ref|XP_003357062.1| PREDICTED: RING finger protein 150 [Sus scrofa].
Length = 443
Score = 79.0 bits (193), Expect(2) = 2e-15
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 18/236 (7%)
Frame = +2
Query: 329 RFGYRLPAEGLKGFLINSKPEN---ACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLN 499
R+G P + +G ++ + + AC+P + +I LI + +C + +K+ N
Sbjct: 81 RYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPAHGKN-WIALIPKGNCTYRDKIRN 139
Query: 500 AQRAGYKAAIVHNVDSD--DLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEK-- 667
A A ++ NV S+ + I+M +E + I IP G+ + L+ T
Sbjct: 140 AFLQNASAVVIFNVGSNTNETITMSHAGVEDIVAIMIPEPK-GKEIVSLLERNITVTMYI 198
Query: 668 --GGHIILVPEFSLPLEYYLIPFXXXXXXXXXXXXXFMITKF----VQDRHRARRNRLRK 829
G + + + I F + I +F +DR++ R K
Sbjct: 199 TIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAK 258
Query: 830 DQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
+ KL + KKGD ++D CA+C++ Y+ D +RILPC H +H CVDPWL
Sbjct: 259 KAISKLQVRTIKKGDKETEPDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWL 314
Score = 21.2 bits (43), Expect(2) = 2e-15
Identities = 5/13 (38%), Positives = 10/13 (76%)
Frame = +1
Query: 988 NQKTCPVCKQKVV 1026
+ +TCP+CK ++
Sbjct: 316 DHRTCPMCKMNIL 328
>ref|XP_001924902.3| PREDICTED: e3 ubiquitin-protein ligase RLIM-like [Sus scrofa].
Length = 635
Score = 68.2 bits (165), Expect(2) = 5e-12
Identities = 27/67 (40%), Positives = 41/67 (61%)
Frame = +2
Query: 788 VQDRHRARRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKC 967
+ D + + L K+Q+ L + F K D C+IC+ EY +G+K+RILPCSH +H C
Sbjct: 548 LNDDYLYQATGLTKEQIDNLAVRSFSKYDVLKACSICITEYTEGNKIRILPCSHEFHIHC 607
Query: 968 VDPWLTK 988
+D WL +
Sbjct: 608 IDRWLAE 614
Score = 20.4 bits (41), Expect(2) = 5e-12
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = +1
Query: 997 TCPVCKQKVV 1026
TCP+C+ ++V
Sbjct: 617 TCPICRGEIV 626
>ref|XP_003123692.2| PREDICTED: e3 ubiquitin-protein ligase RNF130-like [Sus scrofa].
Length = 279
Score = 68.6 bits (166), Expect = 6e-12
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Frame = +2
Query: 791 QDRHRARRNRLRKDQLKKLPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAY 955
+DR++ R K + KL KKGD ++D CA+C++ Y+ D +RILPC H +
Sbjct: 87 RDRNQRRLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVF 146
Query: 956 HCKCVDPWLTK 988
H CVDPWL++
Sbjct: 147 HKSCVDPWLSE 157
>ref|XP_003135236.1| PREDICTED: e3 ubiquitin-protein ligase RLIM isoform 1 [Sus scrofa].
Length = 623
Score = 65.9 bits (159), Expect = 4e-11
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = +2
Query: 821 LRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTK 988
L K+Q+ L + F + D C++C+ EY +G+KLR LPCSH YH C+D WL++
Sbjct: 547 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 602
>ref|XP_003360418.1| PREDICTED: e3 ubiquitin-protein ligase RLIM isoform 2 [Sus scrofa].
Length = 623
Score = 65.9 bits (159), Expect = 4e-11
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = +2
Query: 821 LRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTK 988
L K+Q+ L + F + D C++C+ EY +G+KLR LPCSH YH C+D WL++
Sbjct: 547 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE 602
>ref|XP_003134781.1| PREDICTED: RING finger protein 148-like [Sus scrofa].
Length = 303
Score = 63.2 bits (152), Expect = 2e-10
Identities = 58/234 (24%), Positives = 94/234 (40%), Gaps = 17/234 (7%)
Frame = +2
Query: 332 FGYRLPAEGLKGFLINSKP--ENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDEKVLNAQ 505
FG P E + G ++ + +NAC P+ + + +++ LI R C F K+ A
Sbjct: 62 FGNHSPLERVSGVVVLPEGWNQNACNPMTNFS-RPEWADSWLALIERGGCTFTHKINVAA 120
Query: 506 RAGYKAAIVHNVDS--DDLISMGSNDIEVLKKIDIPSVFIGESSANSLKDEFTYEKGGHI 679
G I++N + + M E +V IG L +KG ++
Sbjct: 121 EKGANGVIIYNYPGTGNKVFPMSHQGTE-----KTVAVMIGNLKGMELLH--LIQKGVYV 173
Query: 680 ILVPEFS---LP-LEYYLIPFXXXXXXXXXXXXXFMITKFVQDRHRARRNRLRKDQLKK- 844
++ E +P L +Y++ F + RR R K +++
Sbjct: 174 TIIIEVGRMHMPWLSHYVMSLFTFLAATVAYLFLFCAWRPRVPSSPTRRRRHIKADVRRA 233
Query: 845 ---LPIHKFKKGD-----EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWL 982
LP+ K GD E D C +C D Y+ D +R L C H +H C+DPWL
Sbjct: 234 IGQLPLRVLKDGDKELDPEEDSCVVCFDIYKPQDVVRTLTCKHFFHKACIDPWL 287
>ref|XP_001925877.2| PREDICTED: zinc/RING finger protein 3 [Sus scrofa].
Length = 815
Score = 62.4 bits (150), Expect = 4e-10
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 17/84 (20%)
Frame = +2
Query: 782 KFVQDRHRARRNRLRKDQLKKLPIHKFKK-----------------GDEYDVCAICLDEY 910
K Q R + NRL L+K+ KF CAICL++Y
Sbjct: 141 KLKQRRSQNSMNRLAVQALEKMETRKFNSKSKGRREGSCGALDTLSSSSTSDCAICLEKY 200
Query: 911 EDGDKLRILPCSHAYHCKCVDPWL 982
DG++LR++PC+H +H KCVDPWL
Sbjct: 201 IDGEELRVIPCTHRFHRKCVDPWL 224
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,269,216
Number of extensions: 537100
Number of successful extensions: 1732
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 30
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001080
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 305 3e-80
Sscrofa_Chr14 68 1e-08
>Sscrofa_Chr13
|| Length = 218635234
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 2 ggacttccgcctcgccttggtgttgtcgtccgcgctccgactctaggctgtggcggtcgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98089994 ggacttccgcctcgccttggtgttgtcgtccgcgctccgactctaggctgtggcggtcgg 98090053
Query: 62 tgcggagattcaggcatgaagtcaggttaggggacttctcccgcagcaaggcggcagggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98090054 tgcggagattcaggcatgaagtcaggttaggggacttctcccgcagcaaggcggcagggg 98090113
Query: 122 agcctatttgtgttgcgaggtcaggcttccaggt 155
||||||||||||||||||||||||||||||||||
Sbjct: 98090114 agcctatttgtgttgcgaggtcaggcttccaggt 98090147
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 147 cttccaggtgattttaaagcgagatgctgctctccatagggatgctcatgctgtcggcca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98113077 cttccaggtgattttaaagcgagatgctgctctccatagggatgctcatgctgtcggcca 98113136
Query: 207 cacaagtctataccatcttgactgtccagctctttgcattcttaaacctactgcctgtag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98113137 cacaagtctataccatcttgactgtccagctctttgcattcttaaacctactgcctgtag 98113196
Query: 267 aagcagacgttttagca 283
|||||||||||||||||
Sbjct: 98113197 aagcagacgttttagca 98113213
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 363 agggttttttgattaactcaaaaccagagaatgcctgtgaacccatagtgcctcctccac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98146477 agggttttttgattaactcaaaaccagagaatgcctgtgaacccatagtgcctcctccac 98146536
Query: 423 taaaagacaattcttctggcactttcatcgtgttaattagaagacttgattgtaattttg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98146537 taaaagacaattcttctggcactttcatcgtgttaattagaagacttgattgtaattttg 98146596
Query: 483 atgaaaaggt 492
||||||||||
Sbjct: 98146597 atgaaaaggt 98146606
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 669 ggggccacattatcttagttccggaatttagtcttcctctggaatactacctaatcccct 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98181367 ggggccacattatcttagttccggaatttagtcttcctctggaatactacctaatcccct 98181426
Query: 729 tccttatcatagtgggcatctgtctcatcttgatagtcattttcatg 775
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98181427 tccttatcatagtgggcatctgtctcatcttgatagtcattttcatg 98181473
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 775 gatcacaaaatttgtccaggacagacatagagctagaagaaacagacttcgtaaagatca 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98191879 gatcacaaaatttgtccaggacagacatagagctagaagaaacagacttcgtaaagatca 98191938
Query: 835 acttaagaaactccctatacataaattcaaaaaagg 870
||||||||||||||||||||||||||||||||||||
Sbjct: 98191939 acttaagaaactccctatacataaattcaaaaaagg 98191974
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 579 ttgaagtactaaagaaaattgacattccatctgtctttattggtgaatcatcagctaatt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98162592 ttgaagtactaaagaaaattgacattccatctgtctttattggtgaatcatcagctaatt 98162651
Query: 639 ccctgaaagatgaattcacatatgaaaaaggg 670
||||||||||||||||||||||||||||||||
Sbjct: 98162652 ccctgaaagatgaattcacatatgaaaaaggg 98162683
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 489 aggttttaaatgcacagagagcagggtacaaagcagccatagttcacaatgttgattctg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98155625 aggttttaaatgcacagagagcagggtacaaagcagccatagttcacaatgttgattctg 98155684
Query: 549 atgacctcattagcatgggatccaacgaca 578
||||||||||||||||||||||||||||||
Sbjct: 98155685 atgacctcattagcatgggatccaacgaca 98155714
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 868 aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98226848 aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 98226907
Query: 928 cagaatccttccctgttcccatg 950
|||||||||||||||||||||||
Sbjct: 98226908 cagaatccttccctgttcccatg 98226930
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 868 aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98403433 aggagatgagtatgatgtatgtgccatttgtttggatgaatatgaagatggagacaagct 98403492
Query: 928 cagaatccttccctgttcccatg 950
|||||||||||||||||||||||
Sbjct: 98403493 cagaatccttccctgttcccatg 98403515
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 284 tataattttgaaaatgcatctcagacatttgatgaccttccagcaagatttggttataga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98121118 tataattttgaaaatgcatctcagacatttgatgaccttccagcaagatttggttataga 98121177
Query: 344 cttccggctgaaggtttaaagg 365
||||||||||||||||||||||
Sbjct: 98121178 cttccggctgaaggtttaaagg 98121199
Score = 147 bits (74), Expect = 1e-32
Identities = 81/82 (98%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 950 gcttatcattgcaagtgtgtagatccttggctaactaaaacc-aaaaaacctgtccggtc 1008
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 98227216 gcttatcattgcaagtgtgtagatccttggctaactaaaaccaaaaaaacctgtccggtc 98227275
Query: 1009 tgcaagcaaaaagttgtacctt 1030
||||||||||||||||||||||
Sbjct: 98227276 tgcaagcaaaaagttgtacctt 98227297
Score = 147 bits (74), Expect = 1e-32
Identities = 81/82 (98%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 950 gcttatcattgcaagtgtgtagatccttggctaactaaaacc-aaaaaacctgtccggtc 1008
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 98403801 gcttatcattgcaagtgtgtagatccttggctaactaaaaccaaaaaaacctgtccggtc 98403860
Query: 1009 tgcaagcaaaaagttgtacctt 1030
||||||||||||||||||||||
Sbjct: 98403861 tgcaagcaaaaagttgtacctt 98403882
>Sscrofa_Chr14
|| Length = 153851969
Score = 67.9 bits (34), Expect = 1e-08
Identities = 95/114 (83%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 289 ttttgaaaatgcatctcagacatttgatgaccttccagcaagatttggttatagacttcc 348
||||||||||||| || ||||||||||||| ||| ||||||| || ||||||||||||
Sbjct: 13162225 ttttgaaaatgcaccttagacatttgatgagctt-cagcaagtttgggttatagacttta 13162283
Query: 349 ggctgaaggtttaaagggttttttgattaactcaaaaccagagaatgcctgtga 402
|||||| | | || | ||||||| |||||||| || ||||| ||||||||||
Sbjct: 13162284 ggctgatagagtgaaagtttttttggttaactcagaagcagagtatgcctgtga 13162337
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,925,472
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 13
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)