Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001126
(1118 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776960.1| elongation factor 1-alpha 1 [Bos taurus]. 462 e-130
Alignment gi|XP_001249988.1| PREDICTED: eukaryotic translation elongation... 460 e-129
Alignment gi|XP_002707888.1| PREDICTED: eukaryotic translation elongation... 453 e-127
Alignment gi|XP_001789118.1| PREDICTED: eukaryotic translation elongation... 452 e-127
Alignment gi|XP_001251588.1| PREDICTED: eukaryotic translation elongation... 446 e-125
Alignment gi|XP_002689033.1| PREDICTED: eukaryotic translation elongation... 444 e-125
Alignment gi|XP_002697322.1| PREDICTED: eukaryotic translation elongation... 438 e-123
Alignment gi|XP_002702894.1| PREDICTED: eukaryotic translation elongation... 438 e-123
Alignment gi|XP_002689070.1| PREDICTED: eukaryotic translation elongation... 429 e-120
Alignment gi|NP_001032541.1| elongation factor 1-alpha 2 [Bos taurus]. 427 e-120
>ref|NP_776960.1| elongation factor 1-alpha 1 [Bos taurus].
Length = 462
Score = 462 bits (1188), Expect = e-130
Identities = 225/225 (100%), Positives = 225/225 (100%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|XP_001249988.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1
isoform 1 [Bos taurus].
Length = 462
Score = 460 bits (1183), Expect = e-129
Identities = 224/224 (100%), Positives = 224/224 (100%)
Frame = +2
Query: 5 PWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVE 184
PWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVE
Sbjct: 209 PWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVE 268
Query: 185 TGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGD 364
TGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGD
Sbjct: 269 TGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGD 328
Query: 365 SKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLE 544
SKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLE
Sbjct: 329 SKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLE 388
Query: 545 DGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
DGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 389 DGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|XP_002707888.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
[Bos taurus].
Length = 461
Score = 453 bits (1165), Expect = e-127
Identities = 220/224 (98%), Positives = 222/224 (99%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGT LLEALDCILPPTRPTDKPLRLPLQD+YKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVTRKDGNASGTPLLEALDCILPPTRPTDKPLRLPLQDIYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
+SKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRS KKL
Sbjct: 328 NSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSAKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQ 673
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQ
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQ 431
>ref|XP_001789118.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1
isoform 1 [Bos taurus].
Length = 461
Score = 452 bits (1163), Expect = e-127
Identities = 221/225 (98%), Positives = 221/225 (98%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGT LLEALDCILPPTRPTDKPLRL LQDVYKIGGIGTVPVGRV
Sbjct: 207 MPWFKGWKVTRKDGNASGTPLLEALDCILPPTRPTDKPLRLSLQDVYKIGGIGTVPVGRV 266
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNV TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVR GNVAG
Sbjct: 267 ETGVLKPGMVVTFAPVNVITEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRHGNVAG 326
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 327 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 386
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 387 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 431
>ref|XP_001251588.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1
isoform 1 [Bos taurus].
Length = 462
Score = 446 bits (1147), Expect = e-125
Identities = 218/225 (96%), Positives = 220/225 (97%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKG KVT KDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGT PVGRV
Sbjct: 208 MPWFKGRKVTHKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTGPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPV+VTTEVKSVEMHHEALSEALPGDNVGFN+KNVSVKDVRRGNV G
Sbjct: 268 ETGVLKPGMVVTFAPVSVTTEVKSVEMHHEALSEALPGDNVGFNIKNVSVKDVRRGNVVG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKID RSGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDHRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|XP_002689033.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
[Bos taurus].
Length = 462
Score = 444 bits (1141), Expect = e-125
Identities = 217/225 (96%), Positives = 219/225 (97%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKG KVT KDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGT PVGRV
Sbjct: 208 MPWFKGRKVTHKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTGPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPV+VTTEVKSVEMHHEALSEALPGDNVGFN+KNVSVKDVRRGNV G
Sbjct: 268 ETGVLKPGMVVTFAPVSVTTEVKSVEMHHEALSEALPGDNVGFNIKNVSVKDVRRGNVVG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAA FTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKID RSGKKL
Sbjct: 328 DSKNDPPMEAAAFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDHRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|XP_002697322.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
[Bos taurus].
Length = 462
Score = 438 bits (1127), Expect = e-123
Identities = 214/225 (95%), Positives = 216/225 (96%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGT LLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVG V
Sbjct: 208 MPWFKGWKVTRKDGNASGTPLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGHV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEAL GDNVGFNVKNVSVKDV RGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALHGDNVGFNVKNVSVKDVHRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKID SGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDHCSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAI+D VPGKPMCVESFSDYPPLG FA+ DMRQT
Sbjct: 388 EDGPKFLKSGDAAIIDKVPGKPMCVESFSDYPPLGHFAMCDMRQT 432
>ref|XP_002702894.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1 [Bos
taurus].
Length = 462
Score = 438 bits (1127), Expect = e-123
Identities = 214/225 (95%), Positives = 216/225 (96%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGT LLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVG V
Sbjct: 208 MPWFKGWKVTRKDGNASGTPLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGHV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEAL GDNVGFNVKNVSVKDV RGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALHGDNVGFNVKNVSVKDVHRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKID SGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDHCSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAI+D VPGKPMCVESFSDYPPLG FA+ DMRQT
Sbjct: 388 EDGPKFLKSGDAAIIDKVPGKPMCVESFSDYPPLGHFAMCDMRQT 432
>ref|XP_002689070.1| PREDICTED: eukaryotic translation elongation factor 1 alpha 1-like
[Bos taurus].
Length = 460
Score = 429 bits (1104), Expect = e-120
Identities = 213/225 (94%), Positives = 215/225 (95%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKG KVTRKDGNASGTTLLEALDCILPPTRPTDKPLRL LQDVYKIGGIGTVPVGRV
Sbjct: 207 MPWFKGRKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLSLQDVYKIGGIGTVPVGRV 266
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNV TEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVR GNVAG
Sbjct: 267 ETGVLKPGMVVTFAPVNVITEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRHGNVAG 326
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVI+LNHPGQISAG+APVLDCHTAHIACKFAELK KID RSGKKL
Sbjct: 327 DSKNDPPMEAAGFTAQVIVLNHPGQISAGHAPVLDCHTAHIACKFAELK-KIDHRSGKKL 385
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGD AIVDMVPGKPMCVES SDYPPLG FAV DMRQT
Sbjct: 386 EDGPKFLKSGDTAIVDMVPGKPMCVESISDYPPLGHFAVCDMRQT 430
>ref|NP_001032541.1| elongation factor 1-alpha 2 [Bos taurus].
Length = 463
Score = 427 bits (1099), Expect = e-120
Identities = 205/225 (91%), Positives = 216/225 (96%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKV RK+GNASG +LLEALD ILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETG+L+PGMVVTFAPVN+TTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKD+RRGNV G
Sbjct: 268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSK+DPP EAA FT+QVIILNHPGQISAGY+PV+DCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
ED PK LKSGDAAIV+MVPGKPMCVESFS YPPLGRFAVRDMRQT
Sbjct: 388 EDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQT 432
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,302,663
Number of extensions: 1128732
Number of successful extensions: 3142
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3123
Number of HSP's successfully gapped: 21
Length of query: 372
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,240,222
Effective search space: 3816379496
Effective search space used: 3816379496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001126
(1118 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001184045.1| elongation factor 1-alpha 1 [Canis lupus fam... 462 e-130
Alignment gi|XP_854017.1| PREDICTED: similar to eukaryotic translation el... 461 e-130
Alignment gi|XP_850407.1| PREDICTED: similar to eukaryotic translation el... 457 e-129
Alignment gi|XP_850819.1| PREDICTED: similar to eukaryotic translation el... 457 e-129
Alignment gi|XP_865737.1| PREDICTED: similar to eukaryotic translation el... 451 e-127
Alignment gi|XP_865724.1| PREDICTED: similar to eukaryotic translation el... 451 e-127
Alignment gi|XP_865709.1| PREDICTED: similar to eukaryotic translation el... 451 e-127
Alignment gi|XP_865692.1| PREDICTED: similar to eukaryotic translation el... 451 e-127
Alignment gi|XP_852422.1| PREDICTED: similar to eukaryotic translation el... 451 e-127
Alignment gi|XP_856113.1| PREDICTED: similar to eukaryotic translation el... 449 e-126
>ref|NP_001184045.1| elongation factor 1-alpha 1 [Canis lupus familiaris].
Length = 462
Score = 462 bits (1188), Expect = e-130
Identities = 225/225 (100%), Positives = 225/225 (100%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|XP_854017.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 [Canis familiaris].
Length = 307
Score = 461 bits (1187), Expect = e-130
Identities = 224/225 (99%), Positives = 225/225 (100%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 54 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 113
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 114 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 173
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 174 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 233
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAI+DMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 234 EDGPKFLKSGDAAIIDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 278
>ref|XP_850407.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 [Canis familiaris].
Length = 462
Score = 457 bits (1176), Expect = e-129
Identities = 224/225 (99%), Positives = 224/225 (99%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLD HTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDRHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|XP_850819.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 [Canis familiaris].
Length = 294
Score = 457 bits (1176), Expect = e-129
Identities = 222/225 (98%), Positives = 224/225 (99%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 40 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 99
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKP MVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 100 ETGVLKPSMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 159
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH+ACKFAELK+KIDRRSGKKL
Sbjct: 160 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHLACKFAELKKKIDRRSGKKL 219
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 220 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 264
>ref|XP_865737.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 isoform 5 [Canis familiaris].
Length = 308
Score = 451 bits (1161), Expect = e-127
Identities = 220/225 (97%), Positives = 221/225 (98%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPT PTDKPL LPLQDVYKIGGIGTVPVGRV
Sbjct: 54 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTCPTDKPLHLPLQDVYKIGGIGTVPVGRV 113
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV RGNVAG
Sbjct: 114 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVHRGNVAG 173
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH ACKFAELKEKIDRRSGKKL
Sbjct: 174 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHTACKFAELKEKIDRRSGKKL 233
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCV+SFSDYPPLGRFAVRDMRQT
Sbjct: 234 EDGPKFLKSGDAAIVDMVPGKPMCVKSFSDYPPLGRFAVRDMRQT 278
>ref|XP_865724.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 isoform 4 [Canis familiaris].
Length = 308
Score = 451 bits (1161), Expect = e-127
Identities = 220/225 (97%), Positives = 221/225 (98%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPT PTDKPL LPLQDVYKIGGIGTVPVGRV
Sbjct: 54 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTCPTDKPLHLPLQDVYKIGGIGTVPVGRV 113
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV RGNVAG
Sbjct: 114 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVHRGNVAG 173
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH ACKFAELKEKIDRRSGKKL
Sbjct: 174 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHTACKFAELKEKIDRRSGKKL 233
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCV+SFSDYPPLGRFAVRDMRQT
Sbjct: 234 EDGPKFLKSGDAAIVDMVPGKPMCVKSFSDYPPLGRFAVRDMRQT 278
>ref|XP_865709.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 isoform 3 [Canis familiaris].
Length = 308
Score = 451 bits (1161), Expect = e-127
Identities = 220/225 (97%), Positives = 221/225 (98%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPT PTDKPL LPLQDVYKIGGIGTVPVGRV
Sbjct: 54 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTCPTDKPLHLPLQDVYKIGGIGTVPVGRV 113
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV RGNVAG
Sbjct: 114 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVHRGNVAG 173
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH ACKFAELKEKIDRRSGKKL
Sbjct: 174 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHTACKFAELKEKIDRRSGKKL 233
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCV+SFSDYPPLGRFAVRDMRQT
Sbjct: 234 EDGPKFLKSGDAAIVDMVPGKPMCVKSFSDYPPLGRFAVRDMRQT 278
>ref|XP_865692.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 isoform 2 [Canis familiaris].
Length = 308
Score = 451 bits (1161), Expect = e-127
Identities = 220/225 (97%), Positives = 221/225 (98%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPT PTDKPL LPLQDVYKIGGIGTVPVGRV
Sbjct: 54 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTCPTDKPLHLPLQDVYKIGGIGTVPVGRV 113
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV RGNVAG
Sbjct: 114 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVHRGNVAG 173
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH ACKFAELKEKIDRRSGKKL
Sbjct: 174 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHTACKFAELKEKIDRRSGKKL 233
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCV+SFSDYPPLGRFAVRDMRQT
Sbjct: 234 EDGPKFLKSGDAAIVDMVPGKPMCVKSFSDYPPLGRFAVRDMRQT 278
>ref|XP_852422.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 isoform 1 [Canis familiaris].
Length = 308
Score = 451 bits (1161), Expect = e-127
Identities = 220/225 (97%), Positives = 221/225 (98%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPT PTDKPL LPLQDVYKIGGIGTVPVGRV
Sbjct: 54 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTCPTDKPLHLPLQDVYKIGGIGTVPVGRV 113
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV RGNVAG
Sbjct: 114 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVHRGNVAG 173
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAH ACKFAELKEKIDRRSGKKL
Sbjct: 174 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHTACKFAELKEKIDRRSGKKL 233
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCV+SFSDYPPLGRFAVRDMRQT
Sbjct: 234 EDGPKFLKSGDAAIVDMVPGKPMCVKSFSDYPPLGRFAVRDMRQT 278
>ref|XP_856113.1| PREDICTED: similar to eukaryotic translation elongation factor 1
alpha 1 isoform 3 [Canis familiaris].
Length = 262
Score = 449 bits (1154), Expect = e-126
Identities = 218/225 (96%), Positives = 220/225 (97%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVT KDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 8 MPWFKGWKVTCKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 67
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVK VEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 68 ETGVLKPGMVVTFAPVNVTTEVKPVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 127
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
D KN+PPM+AAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDR SGKKL
Sbjct: 128 DGKNEPPMDAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRHSGKKL 187
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLG FAVRDMRQT
Sbjct: 188 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGHFAVRDMRQT 232
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,752,342
Number of extensions: 1099463
Number of successful extensions: 3668
Number of sequences better than 1.0e-05: 126
Number of HSP's gapped: 3624
Number of HSP's successfully gapped: 148
Length of query: 372
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,407,560
Effective search space: 4129226080
Effective search space used: 4129226080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001126
(1118 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001393.1| elongation factor 1-alpha 1 [Homo sapiens]. 462 e-130
Alignment gi|NP_001949.1| elongation factor 1-alpha 2 [Homo sapiens]. 427 e-120
Alignment gi|NP_006611.1| HBS1-like protein isoform 1 [Homo sapiens]. 102 5e-22
Alignment gi|NP_001138630.1| HBS1-like protein isoform 2 [Homo sapiens]. 102 5e-22
Alignment gi|NP_001123479.1| eukaryotic peptide chain release factor GTP-... 102 6e-22
Alignment gi|NP_001123478.1| eukaryotic peptide chain release factor GTP-... 102 6e-22
Alignment gi|NP_002085.2| eukaryotic peptide chain release factor GTP-bin... 102 6e-22
Alignment gi|NP_060564.2| eukaryotic peptide chain release factor GTP-bin... 101 1e-21
Alignment gi|NP_003312.3| elongation factor Tu, mitochondrial precursor [... 77 4e-14
Alignment gi|NP_004277.2| GTP-binding protein 1 [Homo sapiens]. 56 5e-08
>ref|NP_001393.1| elongation factor 1-alpha 1 [Homo sapiens].
Length = 462
Score = 462 bits (1188), Expect = e-130
Identities = 225/225 (100%), Positives = 225/225 (100%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|NP_001949.1| elongation factor 1-alpha 2 [Homo sapiens].
Length = 463
Score = 427 bits (1099), Expect = e-120
Identities = 205/225 (91%), Positives = 216/225 (96%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKV RK+GNASG +LLEALD ILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETG+L+PGMVVTFAPVN+TTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKD+RRGNV G
Sbjct: 268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSK+DPP EAA FT+QVIILNHPGQISAGY+PV+DCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
ED PK LKSGDAAIV+MVPGKPMCVESFS YPPLGRFAVRDMRQT
Sbjct: 388 EDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQT 432
>ref|NP_006611.1| HBS1-like protein isoform 1 [Homo sapiens].
Length = 684
Score = 102 bits (255), Expect = 5e-22
Identities = 61/203 (30%), Positives = 99/203 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G LLE +D PP R DKP RL + DV+K G G G++E G ++ G + P N
Sbjct: 467 GLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPN 526
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
T VK + +H E + A GD+V + + + + G + K P F A++
Sbjct: 527 ETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPK-VPIKACTRFRARI 585
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I N I+ G+ +L T L +++ +G+ + PKFL G A+V++
Sbjct: 586 LIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVEL 645
Query: 593 VPGKPMCVESFSDYPPLGRFAVR 661
+P+ +E + D+ LGRF +R
Sbjct: 646 QTQRPIALELYKDFKELGRFMLR 668
>ref|NP_001138630.1| HBS1-like protein isoform 2 [Homo sapiens].
Length = 642
Score = 102 bits (255), Expect = 5e-22
Identities = 61/203 (30%), Positives = 99/203 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G LLE +D PP R DKP RL + DV+K G G G++E G ++ G + P N
Sbjct: 425 GLCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCITGKIEAGYIQTGDRLLAMPPN 484
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
T VK + +H E + A GD+V + + + + G + K P F A++
Sbjct: 485 ETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPK-VPIKACTRFRARI 543
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I N I+ G+ +L T L +++ +G+ + PKFL G A+V++
Sbjct: 544 LIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVEL 603
Query: 593 VPGKPMCVESFSDYPPLGRFAVR 661
+P+ +E + D+ LGRF +R
Sbjct: 604 QTQRPIALELYKDFKELGRFMLR 626
>ref|NP_001123479.1| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
isoform 3 [Homo sapiens].
Length = 499
Score = 102 bits (254), Expect = 6e-22
Identities = 61/208 (29%), Positives = 101/208 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 281 GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK 338
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
EV + PG+N+ +K + +++ G + D N+ F AQ+
Sbjct: 339 HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDAQI 397
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I+ H I GY VL HT + L +D++SG+K + P+F+K I +
Sbjct: 398 VIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 457
Query: 593 VPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+C+E+F D+P +GRF +RD +T
Sbjct: 458 RTAGTICLETFKDFPQMGRFTLRDEGKT 485
>ref|NP_001123478.1| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
isoform 2 [Homo sapiens].
Length = 636
Score = 102 bits (254), Expect = 6e-22
Identities = 61/208 (29%), Positives = 101/208 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 418 GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK 475
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
EV + PG+N+ +K + +++ G + D N+ F AQ+
Sbjct: 476 HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDAQI 534
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I+ H I GY VL HT + L +D++SG+K + P+F+K I +
Sbjct: 535 VIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 594
Query: 593 VPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+C+E+F D+P +GRF +RD +T
Sbjct: 595 RTAGTICLETFKDFPQMGRFTLRDEGKT 622
>ref|NP_002085.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
isoform 1 [Homo sapiens].
Length = 637
Score = 102 bits (254), Expect = 6e-22
Identities = 61/208 (29%), Positives = 101/208 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 419 GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK 476
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
EV + PG+N+ +K + +++ G + D N+ F AQ+
Sbjct: 477 HNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDAQI 535
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I+ H I GY VL HT + L +D++SG+K + P+F+K I +
Sbjct: 536 VIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 595
Query: 593 VPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+C+E+F D+P +GRF +RD +T
Sbjct: 596 RTAGTICLETFKDFPQMGRFTLRDEGKT 623
>ref|NP_060564.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3B
[Homo sapiens].
Length = 628
Score = 101 bits (252), Expect = 1e-21
Identities = 60/209 (28%), Positives = 100/209 (47%)
Frame = +2
Query: 50 SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPV 229
+G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 409 TGLPFIPYLDNLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPN 466
Query: 230 NVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 409
EV + PG+N+ +K + +++ G + D N F Q
Sbjct: 467 KHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSN-LCHSGRTFDVQ 525
Query: 410 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 589
++I+ H I GY VL HT + L +D++SG+K + P+F+K I
Sbjct: 526 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIAR 585
Query: 590 MVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+ +C+E+F D+P +GRF +RD +T
Sbjct: 586 LRTAGTICLETFKDFPQMGRFTLRDEGKT 614
>ref|NP_003312.3| elongation factor Tu, mitochondrial precursor [Homo sapiens].
Length = 455
Score = 76.6 bits (187), Expect = 4e-14
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 22/203 (10%)
Frame = +2
Query: 41 GNASGTTLLEALDCILP-PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MV 211
G S LL+A+D +P P R +KP LP++ VY + G GTV G +E G+LK G
Sbjct: 235 GLKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKGDECE 294
Query: 212 VTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 391
+ N+ T V +EM H++L A GDN+G V+ + +D+RRG V + P +
Sbjct: 295 LLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIKPHQK 354
Query: 392 AGFTAQVIILN------HPGQISAGYAPVLDCHTAHIACKF------------AELKEKI 517
AQV IL+ H +S + PV+ T +AC+ +LK +
Sbjct: 355 V--EAQVYILSKEEGGRHKPFVS-HFMPVMFSLTWDMACRIILPPEKELAMPGEDLKFNL 411
Query: 518 DRRSGKKLEDGPKF-LKSGDAAI 583
R LE G +F L+ G+ I
Sbjct: 412 ILRQPMILEKGQRFTLRDGNRTI 434
>ref|NP_004277.2| GTP-binding protein 1 [Homo sapiens].
Length = 669
Score = 56.2 bits (134), Expect = 5e-08
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Frame = +2
Query: 107 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN----VTTEVKSVEMHHEA 274
++P + D Y + G+GTV G G++K + P ++ VKS+
Sbjct: 392 EEPAEFQIDDTYSVPGVGTVVSGTTLRGLIKLNDTLLLGPDPLGNFLSIAVKSIHRKRMP 451
Query: 275 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYA 454
+ E G F +K + +R+G V + + P + F A++++L+HP IS Y
Sbjct: 452 VKEVRGGQTASFALKKIKRSSIRKGMVMVSPRLN-PQASWEFEAEILVLHHPTTISPRYQ 510
Query: 455 PVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 589
++ C + + +K R+G K +F+K+ + +D
Sbjct: 511 AMVHCGSIRQTATILSM-DKDCLRTGDKATVHFRFIKTPEYLHID 554
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,197,011
Number of extensions: 1096142
Number of successful extensions: 3391
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3374
Number of HSP's successfully gapped: 11
Length of query: 372
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,868,908
Effective search space: 3984867344
Effective search space used: 3984867344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001126
(1118 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034236.2| elongation factor 1-alpha 1 [Mus musculus]. 460 e-129
Alignment gi|NP_031932.1| elongation factor 1-alpha 2 [Mus musculus]. 426 e-119
Alignment gi|NP_001123480.1| eukaryotic peptide chain release factor GTP-... 102 5e-22
Alignment gi|NP_666178.2| eukaryotic peptide chain release factor GTP-bin... 102 5e-22
Alignment gi|NP_032205.2| eukaryotic peptide chain release factor GTP-bin... 101 9e-22
Alignment gi|NP_001036058.1| HBS1-like protein isoform 2 [Mus musculus]. 101 1e-21
Alignment gi|NP_062676.2| HBS1-like protein isoform 1 [Mus musculus]. 101 1e-21
Alignment gi|NP_766333.1| elongation factor Tu, mitochondrial isoform 1 [... 81 1e-15
Alignment gi|NP_001157185.1| elongation factor Tu, mitochondrial isoform ... 77 2e-14
Alignment gi|NP_038846.2| GTP-binding protein 1 [Mus musculus]. 56 4e-08
>ref|NP_034236.2| elongation factor 1-alpha 1 [Mus musculus].
Length = 462
Score = 460 bits (1183), Expect = e-129
Identities = 224/225 (99%), Positives = 225/225 (100%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDG+ASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVTRKDGSASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|NP_031932.1| elongation factor 1-alpha 2 [Mus musculus].
Length = 463
Score = 426 bits (1096), Expect = e-119
Identities = 205/225 (91%), Positives = 215/225 (95%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKV RK+GNASG +LLEALD ILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVERKEGNASGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETG+L+PGMVVTFAPVN+TTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKD+RRGNV G
Sbjct: 268 ETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSK DPP EAA FT+QVIILNHPGQISAGY+PV+DCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
ED PK LKSGDAAIV+MVPGKPMCVESFS YPPLGRFAVRDMRQT
Sbjct: 388 EDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQT 432
>ref|NP_001123480.1| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
isoform 2 [Mus musculus].
Length = 635
Score = 102 bits (254), Expect = 5e-22
Identities = 61/208 (29%), Positives = 101/208 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 417 GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK 474
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
EV + PG+N+ +K + +++ G + D N+ F AQ+
Sbjct: 475 HNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFILCDL-NNLCHSGRTFDAQI 533
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I+ H I GY VL HT + L +D++SG+K + P+F+K I +
Sbjct: 534 VIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 593
Query: 593 VPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+C+E+F D+P +GRF +RD +T
Sbjct: 594 RTAGTICLETFKDFPQMGRFTLRDEGKT 621
>ref|NP_666178.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3A
isoform 1 [Mus musculus].
Length = 636
Score = 102 bits (254), Expect = 5e-22
Identities = 61/208 (29%), Positives = 101/208 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 418 GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK 475
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
EV + PG+N+ +K + +++ G + D N+ F AQ+
Sbjct: 476 HNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFILCDL-NNLCHSGRTFDAQI 534
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I+ H I GY VL HT + L +D++SG+K + P+F+K I +
Sbjct: 535 VIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 594
Query: 593 VPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+C+E+F D+P +GRF +RD +T
Sbjct: 595 RTAGTICLETFKDFPQMGRFTLRDEGKT 622
>ref|NP_032205.2| eukaryotic peptide chain release factor GTP-binding subunit ERF3B
[Mus musculus].
Length = 632
Score = 101 bits (252), Expect = 9e-22
Identities = 59/209 (28%), Positives = 101/209 (48%)
Frame = +2
Query: 50 SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPV 229
+G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 413 TGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPN 470
Query: 230 NVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 409
+ EV + PG+N+ +K + +++ G + + N F Q
Sbjct: 471 KHSVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSN-LCHSGRTFDVQ 529
Query: 410 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 589
++I+ H I GY VL HT + L +D++SG+K + P+F+K I
Sbjct: 530 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIAR 589
Query: 590 MVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+ +C+E+F D+P +GRF +RD +T
Sbjct: 590 LRTAGTICLETFKDFPQMGRFTLRDEGKT 618
>ref|NP_001036058.1| HBS1-like protein isoform 2 [Mus musculus].
Length = 679
Score = 101 bits (251), Expect = 1e-21
Identities = 58/203 (28%), Positives = 98/203 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G LLE +D PP R DKP RL + DV+K G G G++E G ++ G + P N
Sbjct: 462 GMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPN 521
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
T K + +H E + A GD+V + + + + G + K +P F A++
Sbjct: 522 ETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPK-EPIKACTRFRARI 580
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
++ N I+ G+ +L T L +++ +G+ + PK L G A+V++
Sbjct: 581 LVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVEL 640
Query: 593 VPGKPMCVESFSDYPPLGRFAVR 661
+P+ +E + D+ LGRF +R
Sbjct: 641 QTQRPVALELYKDFKELGRFMLR 663
>ref|NP_062676.2| HBS1-like protein isoform 1 [Mus musculus].
Length = 682
Score = 101 bits (251), Expect = 1e-21
Identities = 58/203 (28%), Positives = 98/203 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G LLE +D PP R DKP RL + DV+K G G G++E G ++ G + P N
Sbjct: 465 GMCLLEQIDSFKPPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPN 524
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
T K + +H E + A GD+V + + + + G + K +P F A++
Sbjct: 525 ETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPK-EPIKACTRFRARI 583
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
++ N I+ G+ +L T L +++ +G+ + PK L G A+V++
Sbjct: 584 LVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVEL 643
Query: 593 VPGKPMCVESFSDYPPLGRFAVR 661
+P+ +E + D+ LGRF +R
Sbjct: 644 QTQRPVALELYKDFKELGRFMLR 666
>ref|NP_766333.1| elongation factor Tu, mitochondrial isoform 1 [Mus musculus].
Length = 452
Score = 81.3 bits (199), Expect = 1e-15
Identities = 70/221 (31%), Positives = 104/221 (47%), Gaps = 9/221 (4%)
Frame = +2
Query: 41 GNASGTTLLEALDCILP-PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MV 211
G S LL+A+D +P PTR DKP LP++ VY I G GTV G +E G+LK G
Sbjct: 232 GVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECE 291
Query: 212 VTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 391
+ N+ T V +EM H++L A GDN+G V+ + +D+RRG V + P +
Sbjct: 292 LLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIQPHQK 351
Query: 392 AGFTAQVIILN------HPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGP 553
AQV IL+ H +S + PV+ T +AC+ L G
Sbjct: 352 V--EAQVYILSKEEGGRHKPFVS-HFMPVMFSLTWDMACRVI-------------LPPGK 395
Query: 554 KFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+ G+ + ++ +PM +E RF +RD +T
Sbjct: 396 ELAMPGEDLKLSLILRQPMILEKGQ------RFTLRDGNKT 430
>ref|NP_001157185.1| elongation factor Tu, mitochondrial isoform 2 [Mus musculus].
Length = 435
Score = 77.0 bits (188), Expect = 2e-14
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Frame = +2
Query: 41 GNASGTTLLEALDCILP-PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG--MV 211
G S LL+A+D +P PTR DKP LP++ VY I G GTV G +E G+LK G
Sbjct: 232 GVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECE 291
Query: 212 VTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNV 355
+ N+ T V +EM H++L A GDN+G V+ + +D+RRG V
Sbjct: 292 LLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLV 339
>ref|NP_038846.2| GTP-binding protein 1 [Mus musculus].
Length = 668
Score = 56.2 bits (134), Expect = 4e-08
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Frame = +2
Query: 107 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN----VTTEVKSVEMHHEA 274
++P + D Y + G+GTV G G++K + P ++ VKS+
Sbjct: 392 EEPAEFQIDDTYSVPGVGTVVSGTTLRGLIKLNDTLLLGPDPLGNFLSIAVKSIHRKRMP 451
Query: 275 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYA 454
+ E G F +K + +R+G V + + P + F A++++L+HP IS Y
Sbjct: 452 VKEVRGGQTASFALKKIKRSSIRKGMVMVSPRLN-PQASWEFEAEILVLHHPTTISPRYQ 510
Query: 455 PVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 589
++ C + + +K R+G K +F+K+ + +D
Sbjct: 511 AMVHCGSIRQTATILSM-DKDCLRTGDKATVHFRFIKTPEYLHID 554
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,979,623
Number of extensions: 931014
Number of successful extensions: 2985
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2972
Number of HSP's successfully gapped: 11
Length of query: 372
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,523,851
Effective search space: 3368915919
Effective search space used: 3368915919
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001126
(1118 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090887.1| elongation factor 1-alpha 1 [Sus scrofa]. 462 e-130
Alignment gi|XP_003129826.1| PREDICTED: elongation factor 1-alpha, oocyte... 408 e-114
Alignment gi|XP_003124639.2| PREDICTED: eukaryotic peptide chain release ... 102 3e-22
Alignment gi|XP_003135149.1| PREDICTED: eukaryotic peptide chain release ... 102 5e-22
Alignment gi|XP_003124563.1| PREDICTED: elongation factor Tu, mitochondri... 81 9e-16
Alignment gi|XP_003357741.1| PREDICTED: elongation factor 1-alpha 1-like ... 64 2e-10
Alignment gi|XP_003126063.2| PREDICTED: GTP-binding protein 1 [Sus scrofa]. 56 3e-08
>ref|NP_001090887.1| elongation factor 1-alpha 1 [Sus scrofa].
Length = 462
Score = 462 bits (1188), Expect = e-130
Identities = 225/225 (100%), Positives = 225/225 (100%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG
Sbjct: 268 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL
Sbjct: 328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT
Sbjct: 388 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 432
>ref|XP_003129826.1| PREDICTED: elongation factor 1-alpha, oocyte form-like [Sus
scrofa].
Length = 461
Score = 408 bits (1048), Expect = e-114
Identities = 196/225 (87%), Positives = 209/225 (92%)
Frame = +2
Query: 2 MPWFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRV 181
MPWFKGWKV RK+GNA+G TLLEALD ILPPTRP +KPLRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWKVERKEGNATGVTLLEALDSILPPTRPVNKPLRLPLQDVYKIGGIGTVPVGRV 267
Query: 182 ETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAG 361
ETG LK GMVVTFAP NVTTEVKSVEMHHEAL+EALPGDNVGFNVKNVSVKD+RRGNVAG
Sbjct: 268 ETGFLKAGMVVTFAPNNVTTEVKSVEMHHEALAEALPGDNVGFNVKNVSVKDIRRGNVAG 327
Query: 362 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKL 541
DSKNDPPMEA+ F AQVI+LNHPGQI AGY+PVLDCHTAHI+CKFAEL+EK+DRRSGKKL
Sbjct: 328 DSKNDPPMEASSFVAQVIVLNHPGQIHAGYSPVLDCHTAHISCKFAELREKMDRRSGKKL 387
Query: 542 EDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
ED PK LKSGDAA+V MVP K MCVE+FS YPPLGRFAVRDMRQT
Sbjct: 388 EDNPKALKSGDAAMVQMVPSKAMCVETFSQYPPLGRFAVRDMRQT 432
>ref|XP_003124639.2| PREDICTED: eukaryotic peptide chain release factor GTP-binding
subunit ERF3A-like [Sus scrofa].
Length = 561
Score = 102 bits (255), Expect = 3e-22
Identities = 61/208 (29%), Positives = 101/208 (48%)
Frame = +2
Query: 53 GTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN 232
G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 343 GLPFIPYLDNLPNFNRSVDGPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK 400
Query: 233 VTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQV 412
EV + PG+N+ +K + +++ G + D N+ F AQ+
Sbjct: 401 HNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDAQI 459
Query: 413 IILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDM 592
+I+ H I GY VL HT + L +D++SG+K + P+F+K I +
Sbjct: 460 VIIEHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 519
Query: 593 VPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+C+E+F D+P +GRF +RD +T
Sbjct: 520 RTAGTICLETFKDFPQMGRFTLRDEGKT 547
>ref|XP_003135149.1| PREDICTED: eukaryotic peptide chain release factor GTP-binding
subunit ERF3B-like [Sus scrofa].
Length = 632
Score = 102 bits (253), Expect = 5e-22
Identities = 60/209 (28%), Positives = 101/209 (48%)
Frame = +2
Query: 50 SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPV 229
+G + LD + R D P+RLP+ D YK +GTV +G++E+G + G + P
Sbjct: 413 TGLPFIPYLDNMPNFNRSIDGPIRLPIVDKYK--DMGTVVLGKLESGSIFKGQQLVMMPN 470
Query: 230 NVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 409
EV + PG+N+ +K + +++ G + D N+ F Q
Sbjct: 471 KHNVEVLGILSDDAETDYVAPGENLKIRLKGIEEEEILPGFILCDP-NNLCHSGRTFDVQ 529
Query: 410 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 589
++I+ H I GY VL HT + L +D++SG+K + P+F+K I
Sbjct: 530 IVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIAR 589
Query: 590 MVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+ +C+E+F D+P +GRF +RD +T
Sbjct: 590 LRTAGTICLETFKDFPQMGRFTLRDEGKT 618
>ref|XP_003124563.1| PREDICTED: elongation factor Tu, mitochondrial-like [Sus scrofa].
Length = 452
Score = 81.3 bits (199), Expect = 9e-16
Identities = 70/221 (31%), Positives = 103/221 (46%), Gaps = 9/221 (4%)
Frame = +2
Query: 41 GNASGTTLLEALDCILP-PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVT 217
G S LL+A+D +P PTR +KP LP++ VY I G GTV G +E G+LK G
Sbjct: 232 GLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECE 291
Query: 218 FA--PVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 391
F N+ T V +EM H++L A GDN+G V+ + +D+RRG V +K
Sbjct: 292 FLGHSKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVM--AKPGSIQTH 349
Query: 392 AGFTAQVIILN------HPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGP 553
AQV IL+ H +S + PV+ T +AC+ L G
Sbjct: 350 QKVEAQVYILSKEEGGRHKPFVS-HFMPVMFSLTWDMACRII-------------LPQGK 395
Query: 554 KFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
+ G+ + ++ +PM +E RF +RD +T
Sbjct: 396 ELAMPGEDLKLTLILRQPMILEKGQ------RFTLRDGNRT 430
>ref|XP_003357741.1| PREDICTED: elongation factor 1-alpha 1-like [Sus scrofa].
Length = 59
Score = 63.9 bits (154), Expect = 2e-10
Identities = 28/29 (96%), Positives = 29/29 (100%)
Frame = +2
Query: 590 MVPGKPMCVESFSDYPPLGRFAVRDMRQT 676
MVPGKPMCVESFS+YPPLGRFAVRDMRQT
Sbjct: 1 MVPGKPMCVESFSEYPPLGRFAVRDMRQT 29
>ref|XP_003126063.2| PREDICTED: GTP-binding protein 1 [Sus scrofa].
Length = 583
Score = 56.2 bits (134), Expect = 3e-08
Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Frame = +2
Query: 107 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVN----VTTEVKSVEMHHEA 274
++P + D Y + G+GTV G G++K + P ++ VKS+
Sbjct: 306 EEPAEFQIDDTYSVPGVGTVVSGTTLRGLIKLNDTLLLGPDPLGNFLSIAVKSIHRKRMP 365
Query: 275 LSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYA 454
+ E G F +K + +R+G V + + P + F A++++L+HP IS Y
Sbjct: 366 VKEVRGGQTASFALKKIKRSSIRKGMVMVSPRLN-PQASWEFEAEILVLHHPTTISPRYQ 424
Query: 455 PVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 589
++ C + + +K R+G K +F+K+ + +D
Sbjct: 425 AMVHCGSIRQTATILSM-DKDCLRTGDKATVHFRFIKTPEYLHID 468
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,031,751
Number of extensions: 796518
Number of successful extensions: 2071
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2063
Number of HSP's successfully gapped: 7
Length of query: 372
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 272
Effective length of database: 8,854,232
Effective search space: 2408351104
Effective search space used: 2408351104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001126
(1118 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 1304 0.0
Sscrofa_Chr16 1199 0.0
Sscrofa_Chr04 1005 0.0
Sscrofa_Chr01 993 0.0
Sscrofa_Chr15 837 0.0
Sscrofa_ChrX 684 0.0
Sscrofa_Chr02 551 e-154
Sscrofa_Chr12 527 e-147
Sscrofa_Chr13 414 e-113
Sscrofa_Chr07 377 e-102
>Sscrofa_Chr10
|| Length = 79102373
Score = 1304 bits (658), Expect = 0.0
Identities = 697/710 (98%)
Strand = Plus / Plus
Query: 344 cgtggcaatgtggctggtgacagcaaaaatgacccacctatggaagcagctggctttaca 403
||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 29315076 cgtggcattgtggctggtgacagcaaaaatgacccaccgatggaaccagctggctttaca 29315135
Query: 404 gctcaggtgattatcctgaaccatcctggccagatcagtgctggttacgcacctgtgctg 463
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 29315136 gctcaggtgattatcctgaactatcctggccagatcagtgctggttacgcacctgtgttg 29315195
Query: 464 gattgccacacagctcacattgcctgcaagtttgctgaactgaaggagaagattgatcgt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 29315196 gattgccacacagctcacattgcctgcaagtttgctgaactgaaggagaagattgatttt 29315255
Query: 524 cgttctgggaaaaagctggaagatggccccaagttcttgaaatctggtgatgctgccatt 583
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 29315256 cgttctgggaaaaagctggaagacggccccaagttcttgaaatctggtgatgctgccatt 29315315
Query: 584 gtcgatatggttcctggcaagcccatgtgtgttgagagcttctctgactatcctcctctg 643
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 29315316 gtcgatatggttcctggcaagcccatgtgtgttgagagcttctctgagtatcctcctctg 29315375
Query: 644 ggccgatttgctgttcgtgacatgagacagacagttgctgtgggtgtcatcaaagctgtg 703
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 29315376 ggccgttttgctgttcgtgacatgagacagacagttgctatgggtgtcatcaaagctgtg 29315435
Query: 704 gacaagaaggcagctggagctggcaaggtcaccaagtctgctcagaaagctcagaaggct 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29315436 gacaagaaggcagctggagctggcaaggtcaccaagtctgctcagaaagctcagaaggct 29315495
Query: 764 aaatgaatattatccccaatacctgccaccccagtcttaatcagtggtggaagaacggtc 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29315496 aaatgaatattatccccaatacctgccaccccagtcttaatcagtggtggaagaacggtc 29315555
Query: 824 tcagaactgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgata 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29315556 tcagaactgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgata 29315615
Query: 884 acaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttttgt 943
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29315616 acaatgcattgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttttgt 29315675
Query: 944 gtgtggcagtttttaagttattagtttttaaaatcagtactttttaatggaaacaacttg 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29315676 gtgtggcagtttttaagttattagtttttaaaatcagtactttttaatggaaacaacttg 29315735
Query: 1004 accaaaaatctgtcacagaattttgagacccattaaaaaaagtttaatga 1053
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 29315736 accaaaaatctgtcgcagaattttgagacccattaaaaaaagtttaatga 29315785
>Sscrofa_Chr16
|| Length = 86898991
Score = 1199 bits (605), Expect = 0.0
Identities = 778/835 (93%), Gaps = 8/835 (0%)
Strand = Plus / Plus
Query: 221 gctccagtcaatgttacaactgaagtcaagtctgttgaaatgcaccatgaagctttgagt 280
|||||||| |||||||||||||||| | |||||||||||||||||||||||||| | ||
Sbjct: 75371586 gctccagtaaatgttacaactgaagggaggtctgttgaaatgcaccatgaagcttggggt 75371645
Query: 281 gaagcccttcctggggacaacgtgggctttaatgtcaaaaacgtgtctgtcaaagacgtt 340
||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||
Sbjct: 75371646 gaagcccttcctggggacaacatggtctttaatgtcaagaacgtgtctgtcaaagatgtt 75371705
Query: 341 cgtcgtggcaatgtggctggtgacagcaaaaatgacccacctatggaagcagctggcttt 400
| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 75371706 cattgtggcaacgtggctggtgacagcaaaaatgacccaccaatggaagcagctggcttt 75371765
Query: 401 acagctcaggtgattatcctgaaccatcctggccagatcagtgctggttacgcacctgtg 460
||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||
Sbjct: 75371766 acagctcaggtgattatattgaaccctcctggccaaatcagtgctggatacgcacctgtg 75371825
Query: 461 ctggattgccacacagctcacattgcctgcaagtttgctgaactgaaggagaagattgat 520
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 75371826 ctggattgccacacagctcacattgcccgcaagtttgttgaactgaaggagaagattgat 75371885
Query: 521 cgtcgttctgggaaaaagctggaagatggccccaagttcttgaaatctggtgatgctgcc 580
| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct: 75371886 taccattctgggaaaaagctggaagagggccccaagttctttaaacctggtgatgctgcc 75371945
Query: 581 attgtcgatatggttcctggcaagcccatgtgtgttgagagcttctctgactatcctcct 640
|| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 75371946 atcgttgatatggttcctggcaagcccaggtgtgttgagagcttctctgactatcctcct 75372005
Query: 641 ctgggccgatttgctgttcgtgacatgagacagacagttgctgtgggtgtcatcaaagct 700
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 75372006 ctgggccattttgctgttcgtgacatgagacagacggttgctgtgggtgtcatcaaagcg 75372065
Query: 701 gtggacaagaaggcagctggagctggcaaggtcaccaagtctgctcagaaagctcagaag 760
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 75372066 gtggacaagaaggcagctggagctggcaaggtcaccaagtctgctcaggaagcttagaag 75372125
Query: 761 gctaaatgaatattatccccaatacctgccaccccagtcttaatcagtggtggaagaacg 820
|||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 75372126 gctaaatgaatattattcccactacctcccaccccagtcttaatcagtggtggaagaaca 75372185
Query: 821 gtctcagaactgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatg 880
||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||| |
Sbjct: 75372186 gtctcagaactctttgtcgcaataggccatttaagtttaacagtaaaagactggttaaag 75372245
Query: 881 ataacaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttt 940
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 75372246 ataacaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtggactctttgttt 75372305
Query: 941 tgtgtgtggcagtttttaagttattagtttttaaaatcagtactttttaatggaaacaac 1000
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 75372306 tgtgtgtggcagtt------ttattagtttttaaaatcagtactttttaatggaaacaac 75372359
Query: 1001 ttgaccaaaaatctgtcacagaattttgagacccatt--aaaaaaagtttaatga 1053
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 75372360 ttgaccaaaaatctgtctcagaattttgagacccattcaaaaaaaagtttaatga 75372414
>Sscrofa_Chr04
|| Length = 143465943
Score = 1005 bits (507), Expect = 0.0
Identities = 884/1010 (87%), Gaps = 31/1010 (3%)
Strand = Plus / Plus
Query: 13 caagggatggaaagtcacccgtaaagatggcaatgccagtggaaccacactgcttgaagc 72
||||||||||||||||||| ||||||||| ||| |||||| ||||||| |||||||||||
Sbjct: 97803372 caagggatggaaagtcacctgtaaagatgacaaagccagtagaaccacgctgcttgaagc 97803431
Query: 73 tctggattgcattctaccaccaactcgtccaactgacaagcccttgcgcctgcccctcca 132
|||| ||||||| || ||||||| ||| ||| |||||||||||||| || |||||||
Sbjct: 97803432 tctgaattgcatcctgccaccaattcggccagttgacaagcccttgcatctatccctcca 97803491
Query: 133 ggacgtctacaaaattggtggtattggtacagtccctgtgggccgagtggagaccggtgt 192
||| |||||||||||||||| |||| |||| |||| |||| |||||||||| ||||
Sbjct: 97803492 ggatgtctacaaaattggtgatatttgtactgtcctcttgggttgagtggagactagtgt 97803551
Query: 193 tctcaaacctggcatggtggtcacctttgctccagtcaatgttacaactgaagtcaagtc 252
|| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 97803552 tcccaaacctggcatggtagtcacctttgctccagtcaatgtcacaactgaagtaaagtt 97803611
Query: 253 tgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaacgtgggctttaa 312
||||||| ||| |||||||||||||||| ||| | |||||||||||||| ||||||| |
Sbjct: 97803612 tgttgaactgctccatgaagctttgagtcaagactttcctggggacaacatgggcttcga 97803671
Query: 313 tgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaa 372
|| ||| | | ||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct: 97803672 tggcaagagcttgtctgtcaaagatgttccttgtggcaatgtggctggtgacagcaaaaa 97803731
Query: 373 tgacccacctatggaagcagctggctttacagctcaggtgattatcctgaaccatcctgg 432
||||| | |||||| |||||||||||| | ||||||||| ||||||||||||
Sbjct: 97803732 tgaccta---atggaaacagctggctttataa-----gtgattatcttgaaccatcctga 97803783
Query: 433 ccagatcagtgctggttacgcacctgtgctggattgccacacagctcacattgcctgcaa 492
||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 97803784 ccaaatcagtgctggatatgcacctgtgctagattgccacacagctcacattgcctgcaa 97803843
Query: 493 gtttgctgaactgaaggagaagattgatcgtcgttctgggaaaaagctggaagatggccc 552
|||||||||||||||||||| | |||||| |||||||||||||| | ||||| |||
Sbjct: 97803844 gtttgctgaactgaaggagatca---atcgtcattctgggaaaaagccaggagatgcccc 97803900
Query: 553 caagttcttgaaatctggtgatgctgccattgtcgatatggttcctggcaagcccatgtg 612
|||| ||||||||||||||||||||||| | || ||||||| || |||||||||||
Sbjct: 97803901 tgagtt-ttgaaatctggtgatgctgccatcattgacatggttcttgacaagcccatgta 97803959
Query: 613 tgttgagagcttctctgactatcctcctctgggccgatttgctgttcgtgacatgagaca 672
||||||||||||||||||||||||||| |||||| | ||||||||| |||||||||||||
Sbjct: 97803960 tgttgagagcttctctgactatcctccgctgggcggttttgctgtttgtgacatgagaca 97804019
Query: 673 gacagttgctgtgggtgtcatcaaagctgtggacaagaaggcagctggagctggcaaggt 732
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 97804020 gacagttgctgtaggtgtcatcaaagcagtggacaagaaggcagctggagctggcaagga 97804079
Query: 733 caccaagtctgctcagaaagctcagaaggctaaatgaatattatccccaatacctgccac 792
|| |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 97804080 caacaagtctgctcagaaagctcagaaggctaaatgaatgttatcgccaatatctgccac 97804139
Query: 793 cccagtcttaatcagtggtggaagaacggtctcagaactgtttgtctcaattggccattt 852
||||| |||||| |||||| |||||| ||||||||| | ||||||||||||||||||||
Sbjct: 97804140 cccaggcttaattagtggtagaagaaatgtctcagaaatatttgtctcaattggccattt 97804199
Query: 853 aagtttaatagtaaaagactggttaatgataacaatgcatcgtaaaaccttcagaaggaa 912
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 97804200 aagtttaatagtaaaagactggttaatgataacaatgcattgtaaaaacttcagaag--- 97804256
Query: 913 aggagaatgttttgtggaccatttgttttgtgtgtggcagtttttaagttattagttttt 972
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 97804257 --------attttgtggaccatttgttttgtgtgtggcagttt--------ttagttttt 97804300
Query: 973 aaaatcagtactttttaatggaaacaacttgaccaaaaatctgtcacaga 1022
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 97804301 aaaatcagtactttttaatggaaacaacttaaccaaaaatctgtcacaga 97804350
Score = 543 bits (274), Expect = e-152
Identities = 618/722 (85%), Gaps = 28/722 (3%)
Strand = Plus / Minus
Query: 324 tgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccaccta 383
|||||||||||||| ||| || ||| | || |||| |||||||| |||||||||||| |
Sbjct: 119617951 tgtctgtcaaagacattcctcatggaagtgcggctagtgacagcgaaaatgacccaca-a 119617893
Query: 384 tggaagcagctggctttacagctcaggtgattatcctgaaccatcctggccagatcagtg 443
||||||||||||||||||| ||| || |||||||| |||| ||||| ||| ||||
Sbjct: 119617892 tggaagcagctggctttacggctaagatgattatcttgaaacatccaggctagatac--- 119617836
Query: 444 ctggttacgcacctgtgctggattgccacacagctcacattgcctgcaagtttgctgaac 503
|| ||||||||||||| || ||||||||||||| ||| |||||||||||||||
Sbjct: 119617835 ------ac-cacctgtgctggactgtcacacagctcacactgcttgcaagtttgctgaaa 119617783
Query: 504 tgaaggagaagattgatcgtcgttctgggaaaaagctggaagatggccccaagttcttga 563
||||| | |||| || ||||| |||||||||||||||||||||||| |||||||
Sbjct: 119617782 tgaag---acgatta----tcattctgagaaaaagctggaagatggccccaaattcttga 119617730
Query: 564 aatctggtgatgctgccattgtcgatatggttcctggcaagcccatgtgtgttgagagct 623
|||||| ||||| || ||| | |||| ||| |||||||||||||||||||||||||||
Sbjct: 119617729 aatctgatgatggtgtcatcattgatacagtttctggcaagcccatgtgtgttgagagct 119617670
Query: 624 tctctgactatcctcctctgggccgatttgctgttcgtgacatgagacagacagttgctg 683
|||||||||||| |||||||||| | ||||||||| ||||| |||||| | ||| |||
Sbjct: 119617669 tctctgactatcttcctctgggctgttttgctgtttgtgac--gagacaaatggtttctg 119617612
Query: 684 tgggtgtcatcaaagctgtggacaagaaggcagctggagctggcaaggtcaccaagtctg 743
| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 119617611 tacgtgtcatcaaagcagtggacaagaaggcagctagagctggtaaggtcaccaagtctg 119617552
Query: 744 ctcagaaagctcagaaggctaaatgaatattatccccaatacctgccaccccagtcttaa 803
||||||||||||||||| ||| ||||||||||||||||| || |||| |||||| |||||
Sbjct: 119617551 ctcagaaagctcagaagtctacatgaatattatccccaacacttgcc-ccccaggcttaa 119617493
Query: 804 tcagtggtggaagaacggtctcagaactgtttgtctcaattggccatttaagtttaatag 863
||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 119617492 tca---atggaagaactgtctcagaactgtttgtctcaattggtcacgtaagtttaatag 119617436
Query: 864 taaaagactggttaatgataacaatgcatcgtaaaaccttcagaaggaaaggagaatgtt 923
||||| | ||||||||||||| ||||||| ||||| |||||||||||| |||||||||
Sbjct: 119617435 taaaatattggttaatgataatgatgcatcataaaatattcagaaggaaa-gagaatgtt 119617377
Query: 924 ttgtggaccatttgttttgtgtgtggcagtttttaagttattagtttttaaaatcagtac 983
|| | ||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||
Sbjct: 119617376 ttatagaccatttgttttgtgtatggcag-ttttaagttattag-ttttaaaatcagcac 119617319
Query: 984 tttttaatggaaacaacttgaccaaaaatctgtcacagaattttgagacccattaaaaaa 1043
||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct: 119617318 tttttaaaggaaacagtttgactaaaaatctgtcacag-attttgagacccattagaaaa 119617260
Query: 1044 ag 1045
||
Sbjct: 119617259 ag 119617258
Score = 391 bits (197), Expect = e-106
Identities = 402/468 (85%), Gaps = 13/468 (2%)
Strand = Plus / Plus
Query: 509 gagaagattgatcgtcgttctgggaaaaagctggaagatggccccaagttcttgaaatct 568
|||||||||| || | ||| ||||||||||||||||||| | |||| |||||||||| |
Sbjct: 35747907 gagaagattggtccttgttttgggaaaaagctggaagatagtcccagattcttgaaatgt 35747966
Query: 569 ggtgatgctgccattgtcgatatggttcctggcaagcccatgtgtgttgagagcttctct 628
|||||||||| ||| || | |||||||||||| |||||||| |||||||||||||||| |
Sbjct: 35747967 ggtgatgctgtcatcgttgttatggttcctggtaagcccatttgtgttgagagcttcttt 35748026
Query: 629 gactatcctcctctgggccgatttgctgttcgtgacatgagacagacagttgctgtgggt 688
|||||||||| |||||| ||||||||| |||||| |||||||| |||| |||||||
Sbjct: 35748027 gactatcctc---tgggccattttgctgttggtgacaagagacagatggttggtgtgggt 35748083
Query: 689 gtcatcaaagctgtggacaagaaggcagctggagctggcaaggtcaccaagtctgctcag 748
||||||||||| ||||| ||||| ||| |||||||||||||||||||| |||| | |||
Sbjct: 35748084 gtcatcaaagcagtggatgagaagacagttggagctggcaaggtcaccaggtctacccag 35748143
Query: 749 aaagctcagaaggctaaatgaatattatccccaatacctgccaccccagtcttaatcagt 808
|| || || ||||||||||||||| | || ||||| ||||||||| ||||
Sbjct: 35748144 aagactgaggaggctaaatgaatatcac-------acttgccattgcagtcttaaacagt 35748196
Query: 809 ggtggaagaacggtctcagaactgtttgtctcaattggccatttaagtttaatagtaaaa 868
|||||||||| ||||||||||||||| |||||| ||||||| ||||||| ||| ||||
Sbjct: 35748197 ggtggaagaatggtctcagaactgttgatctcaaccggccatt-aagtttagtagcaaaa 35748255
Query: 869 gactggttaatgataacaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtg 928
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35748256 gactggttaatgatagcaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtg 35748315
Query: 929 gaccatttgttttgtgtgtggcagtttttaagttattagtttttaaaa 976
||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 35748316 gactgtttgttttgtgtgtggca--ttttaagttattagttttaaaaa 35748361
Score = 377 bits (190), Expect = e-102
Identities = 481/575 (83%), Gaps = 6/575 (1%)
Strand = Plus / Plus
Query: 202 tggcatggtggtcacctttgctccagtca-atgttacaactgaagtcaagtctgttgaaa 260
||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 91658534 tggcaaggtggtcacctttgctccagtcagatgttacaactgaagtaaagtctgttgaaa 91658593
Query: 261 tgcaccatgaagctttgagtgaagcccttcctggggacaacgtgggctttaatgtcaaaa 320
|| |||||||||||||||| |||| ||||||||||| || |||||||| | |||||| |
Sbjct: 91658594 tgtaccatgaagctttgagaaaagctcttcctggggaaaatgtgggcttcattgtcaaga 91658653
Query: 321 acgtgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccac 380
| |||||||||||||| |||| || ||||| ||||||||| ||||| ||||||||| |||
Sbjct: 91658654 atgtgtctgtcaaagatgttcatcctggcagtgtggctggcgacagtaaaaatgactcac 91658713
Query: 381 ctatggaagcagctggctttacagctcaggtgattatcctgaaccatcctggccagatca 440
|| | ||||||| ||| |||| ||| |||||||| ||| |||||| || || ||||
Sbjct: 91658714 tgttgaaggcagctgtcttcacaggtcaagtgattatattgagccatccaggtcaaatca 91658773
Query: 441 gtgctggttacgcacctgtgctggattgccacacagctcacattgcctgcaagtttgctg 500
||||||| || |||||||||||||||| |||| |||| |||| |||| || | ||
Sbjct: 91658774 gtgctggatatgcacctgtgctggattatcacagagct--cattatttgcaggtctcttg 91658831
Query: 501 aactgaaggagaagattgatcgtcgttctgggaaaaagctggaagatggccccaagttct 560
||||||||||||||||||| | |||| || ||||| || || | |||||| ||||
Sbjct: 91658832 ggctgaaggagaagattgatcattattctagggaaaagatgcaa---gtccccaaattct 91658888
Query: 561 tgaaatctggtgatgctgccattgtcgatatggttcctggcaagcccatgtgtgttgaga 620
|| |||||||| ||| | | || | ||||||||||||||||||||||| ||||||||
Sbjct: 91658889 tggaatctggttatggtactggggttggtatggttcctggcaagcccatgtatgttgaga 91658948
Query: 621 gcttctctgactatcctcctctgggccgatttgctgttcgtgacatgagacagacagttg 680
|||||||||||||||||| |||| ||| ||||||||| ||||||| ||| || ||||
Sbjct: 91658949 gcttctctgactatcctcttctgagccattttgctgtttgtgacattagattgatggttg 91659008
Query: 681 ctgtgggtgtcatcaaagctgtggacaagaaggcagctggagctggcaaggtcaccaagt 740
| ||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 91659009 ccatgggtctcatcaaagcggtggacaaggaggcagctggagctggcaaggtcgtcaagt 91659068
Query: 741 ctgctcagaaagctcagaaggctaaatgaatatta 775
|||| ||||||||| |||||| |||||||||||||
Sbjct: 91659069 ctgcccagaaagcttagaaggttaaatgaatatta 91659103
Score = 260 bits (131), Expect = 1e-66
Identities = 255/295 (86%), Gaps = 1/295 (0%)
Strand = Plus / Minus
Query: 35 aaagatggcaatgccagtggaaccacactgcttgaagctctggattgcattctaccacca 94
|||||||| ||||||| |||||| ||||| ||||||||||| ||| |||| || ||| ||
Sbjct: 119618517 aaagatggtaatgccaatggaactacactacttgaagctcttgatcgcatcctgccatca 119618458
Query: 95 actcgtccaactgacaagcccttgcgcctgcccctccaggacgtctacaaaattggtggt 154
|| | |||||||||||||||||| | ||| || ||||||||| ||||||||||||| ||
Sbjct: 119618457 acacatccaactgacaagcccttacatctgtcc-tccaggacgcctacaaaattggtagt 119618399
Query: 155 attggtacagtccctgtgggccgagtggagaccggtgttctcaaacctggcatggtggtc 214
| | |||| |||||||||| | ||| |||| |||||||||||| ||||||||||||||
Sbjct: 119618398 actagtactatccctgtgggtcaggtgaagactggtgttctcaaatctggcatggtggtc 119618339
Query: 215 acctttgctccagtcaatgttacaactgaagtcaagtctgttgaaatgcaccatgaagct 274
|| | |||||||||||||||||||| |||||| |||| |||||||||| || ||||||||
Sbjct: 119618338 acttctgctccagtcaatgttacaagtgaagtaaagtttgttgaaatgtactatgaagct 119618279
Query: 275 ttgagtgaagcccttcctggggacaacgtgggctttaatgtcaaaaacgtgtctg 329
||||||||| |||||||||||||||| |||||||| |||||||| ||| ||||||
Sbjct: 119618278 ttgagtgaaacccttcctggggacaatgtgggcttcaatgtcaagaacatgtctg 119618224
Score = 79.8 bits (40), Expect = 3e-12
Identities = 140/172 (81%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 717 ctggagctggcaaggtcaccaagtctgctcagaaagctcagaaggctaaatgaatattat 776
|||||||| |||||||||||| ||||||||||||| |||| ||| ||| ||||||||||
Sbjct: 28882197 ctggagctagcaaggtcaccacgtctgctcagaaaactcaaaagtttaagtgaatattat 28882138
Query: 777 ccccaatacctgccaccccagtcttaatcagtggtg-gaagaacggtctcagaactgttt 835
| || |||| ||||| || |||||||||| ||| || || ||||| | || | |||
Sbjct: 28882137 gcataacacctcccaccacaaccttaatcagtagtgtaaaaaatggtcttataattattt 28882078
Query: 836 gtctcaattggccatttaagtttaatagtaaaagactggttaatgataacaa 887
|| | ||||| |||||||||||||||||| | |||| |||||||||||||
Sbjct: 28882077 gttttaattgatcatttaagtttaatagtagatgacttattaatgataacaa 28882026
Score = 75.8 bits (38), Expect = 5e-11
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 1012 tctgtcacagaattttgagacccattaaaaaaagtttaatga 1053
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 97804598 tctgtcacagaattttgagacccatttaaaaaagtttaatga 97804639
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 2 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgc 48
||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct: 119618754 atgccttggttcaagggatggaaggtcagctgtaaagatggcaatgc 119618708
Score = 61.9 bits (31), Expect = 7e-07
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 345 gtggcaatgtggctggtgacagcaaaaatgacccacctatggaagcagctggctt 399
||||||| |||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct: 28883528 gtggcaacatggctgatgacagataaaatgacccaccaatggaagcagctggctt 28883474
>Sscrofa_Chr01
|| Length = 315321322
Score = 993 bits (501), Expect = 0.0
Identities = 918/1046 (87%), Gaps = 17/1046 (1%)
Strand = Plus / Minus
Query: 2 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 61
|||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||
Sbjct: 119676532 atgccttggttcaagggatggaaattcacccataaa-atggcaatgccggtagaaccatg 119676474
Query: 62 ctgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgc 121
|| ||||||||||||||||||| | ||||||||| ||||||||||||| |||| | |
Sbjct: 119676473 ttgtttgaagctctggattgcatcttgccaccaacttgtccaactgacaaaccct-gtgt 119676415
Query: 122 ctgcccctccaggacgtctacaaaattggtggtattggtacagtccctgtgggccgagtg 181
||||||||| || ||||||||||||||||||| || | ||| |||| || | || | ||
Sbjct: 119676414 ctgcccctctagaacgtctacaaaattggtggcatggatactgtccatgggtgc--aatg 119676357
Query: 182 gagaccggtgttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaact 241
|||| || |||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct: 119676356 tagactggcattctcaaatctggcatgatggtcacctttgctccagtcaatgttacaaat 119676297
Query: 242 gaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaac 301
||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct: 119676296 gaagtcaagtctgttgaaatgca-catgaagctttgagtgaagccctttccagggacaat 119676238
Query: 302 gtgggctttaatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggt 361
| |||||| | ||||| || |||||||||||| | |||| || ||||| | |||||| |
Sbjct: 119676237 gagggcttcagtgtcaggaatgtgtctgtcaaacatgttcatcatggcagtatggctgat 119676178
Query: 362 gacagcaaaaatgacccacctatggaagcagctggctttacagctcaggtgattatcctg 421
|| |||||||||||||| | ||||||||||||| |||||||||||||||||||| ||
Sbjct: 119676177 atca-aaaaaatgacccaccaaaggaagcagctggccttacagctcaggtgattatcttg 119676119
Query: 422 aaccatcctggccagatcagtgctggttacgcacctgtgctggattgccacacagctcac 481
||||||||||| || ||||||||| | || | ||||||||||||||| | |||||||||
Sbjct: 119676118 aaccatcctggtcaaatcagtgctagatatgtacctgtgctggattgtctcacagctcaa 119676059
Query: 482 attgcctgcaagtttgctgaactgaaggagaagattgatcgtcgttctgggaaaaagctg 541
||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 119676058 attgcttgcaagtttgctgaactga---agaagattgatcatcattctgggaaaaagctg 119676002
Query: 542 gaagatggccccaagttcttgaaatctggtgatgctgccattgtcgatatggttcctggc 601
| |||||||||||| |||||||| |||||||||||| ||||||| |||| |||||||||
Sbjct: 119676001 ggagatggccccaaattcttgaactctggtgatgctaccattgttgatagggttcctggt 119675942
Query: 602 aagcccatgtgtgttgagagcttctctgactatcctcctctgggccgatttgctgttcgt 661
|||||||||||||||||||| ||||||||||||||||| ||| |||| |||||| ||| |
Sbjct: 119675941 aagcccatgtgtgttgagagtttctctgactatcctcccctgagccgttttgctcttcat 119675882
Query: 662 gacatgagacagacagttg---ctgtgggtgtcatcaaagctgtggacaagaaggcagct 718
||||||||||||| || | |||||| | |||||||||| ||| |||| |||||||||
Sbjct: 119675881 gacatgagacagatggtggtcactgtggttttcatcaaagcagtgaacaaaaaggcagct 119675822
Query: 719 ggagctggcaaggtcaccaagtctgctcagaaagctcagaaggctaaatgaatattatcc 778
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 119675821 ggagctggcaaggtcaccaagtctgctcagaaagctcagaaatctaaatgaatattatcc 119675762
Query: 779 ccaatacctgccaccccagtcttaatcagtggtggaagaacggtctcagaactgtttgtc 838
|||||| |||||||||||||||||||| |||| |||||| |||||||||||| ||||||
Sbjct: 119675761 ccaatatgtgccaccccagtcttaatcaatggtagaagaatggtctcagaactctttgtc 119675702
Query: 839 tcaattggccatttaagtttaatagtaaaagactggttaatgataacaatgcatcgtaaa 898
| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 119675701 ttaattggccatttaagtttaatagtaaaagacttattaatgataac---ccattgtaaa 119675645
Query: 899 accttcagaaggaaaggagaatgttttgtggaccatttgttttgtgtgtggcagttttta 958
||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| |
Sbjct: 119675644 accttcagaaggaaaggag-atgttttgtggaatgtttgttttgtgtgcggcag-tttca 119675587
Query: 959 agttattagtttttaaaatcagtactttttaatggaaacaacttgaccaaaaatctgtca 1018
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 119675586 agttattagttttaaaactcagtactttttaatgaaaacaacttgaccaaaaatctgtca 119675527
Query: 1019 cagaattttgagacccattaaaaaaa 1044
|| |||||||||||||||||||||||
Sbjct: 119675526 caaaattttgagacccattaaaaaaa 119675501
Score = 813 bits (410), Expect = 0.0
Identities = 410/410 (100%)
Strand = Plus / Plus
Query: 644 ggccgatttgctgttcgtgacatgagacagacagttgctgtgggtgtcatcaaagctgtg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477480 ggccgatttgctgttcgtgacatgagacagacagttgctgtgggtgtcatcaaagctgtg 103477539
Query: 704 gacaagaaggcagctggagctggcaaggtcaccaagtctgctcagaaagctcagaaggct 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477540 gacaagaaggcagctggagctggcaaggtcaccaagtctgctcagaaagctcagaaggct 103477599
Query: 764 aaatgaatattatccccaatacctgccaccccagtcttaatcagtggtggaagaacggtc 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477600 aaatgaatattatccccaatacctgccaccccagtcttaatcagtggtggaagaacggtc 103477659
Query: 824 tcagaactgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgata 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477660 tcagaactgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgata 103477719
Query: 884 acaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttttgt 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477720 acaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttttgt 103477779
Query: 944 gtgtggcagtttttaagttattagtttttaaaatcagtactttttaatggaaacaacttg 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477780 gtgtggcagtttttaagttattagtttttaaaatcagtactttttaatggaaacaacttg 103477839
Query: 1004 accaaaaatctgtcacagaattttgagacccattaaaaaaagtttaatga 1053
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477840 accaaaaatctgtcacagaattttgagacccattaaaaaaagtttaatga 103477889
Score = 515 bits (260), Expect = e-143
Identities = 260/260 (100%)
Strand = Plus / Plus
Query: 152 ggtattggtacagtccctgtgggccgagtggagaccggtgttctcaaacctggcatggtg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476800 ggtattggtacagtccctgtgggccgagtggagaccggtgttctcaaacctggcatggtg 103476859
Query: 212 gtcacctttgctccagtcaatgttacaactgaagtcaagtctgttgaaatgcaccatgaa 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476860 gtcacctttgctccagtcaatgttacaactgaagtcaagtctgttgaaatgcaccatgaa 103476919
Query: 272 gctttgagtgaagcccttcctggggacaacgtgggctttaatgtcaaaaacgtgtctgtc 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476920 gctttgagtgaagcccttcctggggacaacgtgggctttaatgtcaaaaacgtgtctgtc 103476979
Query: 332 aaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccacctatggaagca 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476980 aaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccacctatggaagca 103477039
Query: 392 gctggctttacagctcaggt 411
||||||||||||||||||||
Sbjct: 103477040 gctggctttacagctcaggt 103477059
Score = 472 bits (238), Expect = e-130
Identities = 238/238 (100%)
Strand = Plus / Plus
Query: 408 aggtgattatcctgaaccatcctggccagatcagtgctggttacgcacctgtgctggatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477144 aggtgattatcctgaaccatcctggccagatcagtgctggttacgcacctgtgctggatt 103477203
Query: 468 gccacacagctcacattgcctgcaagtttgctgaactgaaggagaagattgatcgtcgtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477204 gccacacagctcacattgcctgcaagtttgctgaactgaaggagaagattgatcgtcgtt 103477263
Query: 528 ctgggaaaaagctggaagatggccccaagttcttgaaatctggtgatgctgccattgtcg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477264 ctgggaaaaagctggaagatggccccaagttcttgaaatctggtgatgctgccattgtcg 103477323
Query: 588 atatggttcctggcaagcccatgtgtgttgagagcttctctgactatcctcctctggg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103477324 atatggttcctggcaagcccatgtgtgttgagagcttctctgactatcctcctctggg 103477381
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 2 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476562 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 103476621
Query: 62 ctgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103476622 ctgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgc 103476681
Query: 122 ctgcccctccaggacgtctacaaaattggtggta 155
||||||||||||||||||||||||||||||||||
Sbjct: 103476682 ctgcccctccaggacgtctacaaaattggtggta 103476715
Score = 153 bits (77), Expect = 2e-34
Identities = 313/389 (80%), Gaps = 2/389 (0%)
Strand = Plus / Plus
Query: 132 aggacgtctacaaaattggtggt-attggtacagtccctgtgggccgagtggagaccggt 190
|||| |||||||||||||||| | |||||||| || |||| ||| |||||||||| |||
Sbjct: 139609921 aggatgtctacaaaattggtgattattggtactgttcctgggggttgagtggagactggt 139609980
Query: 191 gttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaactgaagtcaag 250
| | |||||| || | ||||||| |||||||||||||||| |||||||| ||| ||
Sbjct: 139609981 gctgtcaaacatgcc-tggtggttgcctttgctccagtcaacactacaactggagtaaat 139610039
Query: 251 tctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaacgtgggcttt 310
||||| |||| ||| |||||| ||||| ||| || |||| |||||| || |||| ||
Sbjct: 139610040 cctgttcaaatacactatgaagttttgaatgaggctcttcttggggaaaatgtggatttc 139610099
Query: 311 aatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaa 370
|||||| || ||||||||||| || || | || |||| | ||||||||| || ||
Sbjct: 139610100 ggtgtcaagaatgtgtctgtcaaggatgtccatcatggcgtcgaggctggtgatagtgaa 139610159
Query: 371 aatgacccacctatggaagcagctggctttacagctcaggtgattatcctgaaccatcct 430
||||||||||| | ||||||||||||||| || | ||||||||||| ||||||||| ||
Sbjct: 139610160 aatgacccaccaagggaagcagctggcttcactgatcaggtgattaccctgaaccaccca 139610219
Query: 431 ggccagatcagtgctggttacgcacctgtgctggattgccacacagctcacattgcctgc 490
||||| ||||| ||||| || ||||||||||||||| || || ||||||||| |||
Sbjct: 139610220 ggccaaatcagcgctggatataaacctgtgctggattgtcatgcaactcacattgtttgc 139610279
Query: 491 aagtttgctgaactgaaggagaagattga 519
||||||||||| |||| | ||||| ||||
Sbjct: 139610280 aagtttgctgagctgaggaagaaggttga 139610308
Score = 147 bits (74), Expect = 2e-32
Identities = 110/122 (90%)
Strand = Plus / Plus
Query: 678 ttgctgtgggtgtcatcaaagctgtggacaagaaggcagctggagctggcaaggtcacca 737
||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 97978365 ttgctgtgggtgtcaccaaagcagtggacacgaaggcagctggagctggcaaagtcactg 97978424
Query: 738 agtctgctcagaaagctcagaaggctaaatgaatattatccccaatacctgccaccccag 797
|||||| ||||||||||||||||| ||||||| || ||||||||||||||||| |||||
Sbjct: 97978425 tgtctgcacagaaagctcagaaggccaaatgaacatcatccccaatacctgccatcccag 97978484
Query: 798 tc 799
||
Sbjct: 97978485 tc 97978486
Score = 107 bits (54), Expect = 1e-20
Identities = 79/86 (91%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 821 gtctcagaactgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatg 880
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 150535600 gtctcagaactgtttgtctcaattgaccatt-aagtttaatagtaaaagactggttaatg 150535542
Query: 881 ataacaatgcatcgtaaaaccttcag 906
||| ||||||| ||||| ||||||
Sbjct: 150535541 gtaaaaatgcattataaaatcttcag 150535516
Score = 85.7 bits (43), Expect = 5e-14
Identities = 127/155 (81%)
Strand = Plus / Plus
Query: 365 agcaaaaatgacccacctatggaagcagctggctttacagctcaggtgattatcctgaac 424
||||||||| ||||| ||||||||| ||||||| |||||||| |||||||||| || |
Sbjct: 97978039 agcaaaaataacccattaatggaagcaactggcttcacagctcaagtgattatccggagc 97978098
Query: 425 catcctggccagatcagtgctggttacgcacctgtgctggattgccacacagctcacatt 484
||||| ||||| | ||||| | | ||||| | |||||||||| ||||| | |||||
Sbjct: 97978099 catccaggccaagttagtgccagctctgcaccctttctggattgccccacagtttacatt 97978158
Query: 485 gcctgcaagtttgctgaactgaaggagaagattga 519
|| |||||||||||| | |||||||||||| ||||
Sbjct: 97978159 gcttgcaagtttgctaagctgaaggagaaggttga 97978193
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 830 ctgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgataac 885
|||||| |||||| |||||||||||| |||||||||||| ||| |||||||||||
Sbjct: 139610421 ctgtttctctcaactggccatttaagcttaatagtaaaattctgcttaatgataac 139610476
Score = 60.0 bits (30), Expect = 3e-06
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 993 gaaacaacttgaccaaaaa-tctgtcacagaattttgagacccattaaaa 1041
||||||||||||||||||| ||| || ||||||||||||| |||||||||
Sbjct: 172641814 gaaacaacttgaccaaaaaatctttctcagaattttgagatccattaaaa 172641863
>Sscrofa_Chr15
|| Length = 157681621
Score = 837 bits (422), Expect = 0.0
Identities = 595/650 (91%), Gaps = 2/650 (0%)
Strand = Plus / Minus
Query: 324 tgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccaccta 383
||||||||||||| || ||||||| |||||||||||||||||||||||||||| |
Sbjct: 28341730 tgtctgtcaaagatatttgtcgtggtggtgtggctggtgacagcaaaaatgacccatgga 28341671
Query: 384 tggaagcagctggctttacagctcaggtgattatcctgaaccatcctggccagatcagtg 443
||||| ||||||||||||||||||| ||||| ||| |||||||||||||||| || |||
Sbjct: 28341670 tggaaacagctggctttacagctcaagtgatcatcttgaaccatcctggccaaattggtg 28341611
Query: 444 ctggttacgcacctgtgctggattgccacacagctcacattgcctgcaagtttgctgaac 503
|||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 28341610 ttggttacgcacctgtgttggattgtcacacagctcacattgcttgcaagtttgctgaat 28341551
Query: 504 tgaaggagaagattgatcgtcgttctgggaaaaagctggaagatggccccaagttcttga 563
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct: 28341550 tgaaggagaagattgattgttgttctgggaaaaagttggaagatggccccaagttcttga 28341491
Query: 564 aatctggtgatgctgccattgtcgatatggttcctggcaagcccatgtgtgttgagagct 623
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||
Sbjct: 28341490 aatctggtgatgctgccattgttaatatggttcctgggaagcccatgtgtgttgagaact 28341431
Query: 624 tctctgactatcctcctctgggccgatttgctgttcgtgacatgagacagacagttgctg 683
| | ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct: 28341430 tttttgactatcctcctctgggctgttttgctgtccgtgacatgagacagacagttgctg 28341371
Query: 684 tgggtgtcatcaaagctgtggacaagaaggcagctggagctggcaaggtcaccaagtctg 743
||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 28341370 tgggtgtcatctaagctgtggacaagaagtcagctggagccagcaaggtcaccaagtctg 28341311
Query: 744 ctcagaaagctcagaaggctaaatgaatattatccccaatacctgccaccccagtcttaa 803
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 28341310 ctcagaaagctcagaaggctaaatgaatattatccccaatacctgccagtccagttttaa 28341251
Query: 804 tcagtggtggaagaacggtctcagaactgtttgtctcaattggccatttaagtttaatag 863
||||||||| ||||| ||||||| |||||||||| |||| || ||||||| ||||| ||
Sbjct: 28341250 tcagtggtgaaagaatggtctcaaaactgtttgtttcaactgaccatttaggtttagtat 28341191
Query: 864 taaaagactggttaatgataacaatgcatcgtaaaaccttcagaa-ggaaaggagaatgt 922
|||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 28341190 taaaagactgattaatgataacaatgcatcataaaaccttcagaagggaaaggagaatgt 28341131
Query: 923 tttgtggaccatttgttttgtgtgtggcagtttttaagttattagttttt 972
||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 28341130 tttgtggaccatttgttttgtgtgtgg-tggttttaagttattagttttt 28341082
Score = 349 bits (176), Expect = 2e-93
Identities = 293/332 (88%)
Strand = Plus / Minus
Query: 1 tatgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccac 60
|||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct: 28342279 tatgccttggtttaagggatggaaattcgcccataaagatggcaatgccagtggaaccac 28342220
Query: 61 actgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcg 120
||||||||||||||||||||||| || |||||||||| | ||| ||| || |||||| |
Sbjct: 28342219 gctgcttgaagctctggattgcatactgccaccaactcttgcaaatgataatcccttgtg 28342160
Query: 121 cctgcccctccaggacgtctacaaaattggtggtattggtacagtccctgtgggccgagt 180
||||| ||||| || | ||| |||| | ||||||||||||| || |||||| | ||||
Sbjct: 28342159 tctgcctctccatgatgcctataaaactagtggtattggtactgttcctgtgtgttgagt 28342100
Query: 181 ggagaccggtgttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaac 240
|||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 28342099 ggagactggtattctcaaacctggcatggtggtcacctttgctccagtcaacattacaac 28342040
Query: 241 tgaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaa 300
|||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 28342039 tgaagtaaaatctgttgaaatgcaccatgaagctttgagtgaagcccttccttgggacag 28341980
Query: 301 cgtgggctttaatgtcaaaaacgtgtctgtca 332
|||||||| ||||| || ||| |||||||||
Sbjct: 28341979 tgtgggcttcaatgttaagaacatgtctgtca 28341948
Score = 141 bits (71), Expect = 9e-31
Identities = 158/183 (86%), Gaps = 3/183 (1%)
Strand = Plus / Plus
Query: 251 tctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaacgtgggcttt 310
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 112016097 tctgttgaaatgcaccatgaagctttgagtgaagctcttcctgggggcattgtgggcttc 112016156
Query: 311 aatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaa 370
|||||||| ||||||||||||||| | |||| | |||||| ||||| |||||||||||
Sbjct: 112016157 aatgtcaagaacgtgtctgtcaaatatgttcattgtggcatcatggct-gtgacagcaaa 112016215
Query: 371 aatgacccacctatggaagcagctggctttacagctcaggtgattatcctgaaccatcct 430
|||| ||| || |||||||||| ||| |||||| ||||||| || ||||||||||||
Sbjct: 112016216 aatggtcca-gaatagaagcagctgacttcacagcttaggtgatcat-ctgaaccatcct 112016273
Query: 431 ggc 433
|||
Sbjct: 112016274 ggc 112016276
Score = 137 bits (69), Expect = 1e-29
Identities = 191/232 (82%), Gaps = 16/232 (6%)
Strand = Plus / Plus
Query: 824 tcagaactgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgata 883
|||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct: 112016686 tcagaactgtttgtctcaattggccatttaagtttagtaataaaagactgattaatgata 112016745
Query: 884 acaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttt--- 940
|||| |||||||||||| ||| |||||| ||||||||||||| |||||| ||
Sbjct: 112016746 caggtgcaatgtaaaaccttcaaaagcaaaggataatgttttgtggatcatttgcttttg 112016805
Query: 941 -----------tgtgtgtggcagtttttaagttattagtttttaaaatcagtacttttta 989
|||||||||||| |||||||||||| |||| ||||||| |||| ||||
Sbjct: 112016806 tggtgtatgtatgtgtgtggcag-ttttaagttatttgtttctaaaatctatactcttta 112016864
Query: 990 atggaaacaacttgaccaaaaatctgtcacagaattttgagacccattaaaa 1041
||||||||| |||| ||||||||||||| ||| ||||| || |||||||||
Sbjct: 112016865 atggaaacactttga-caaaaatctgtcaaagagttttgggatccattaaaa 112016915
Score = 129 bits (65), Expect = 4e-27
Identities = 75/77 (97%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 954 ttttaagttattagtttttaaaatcagtactttttaatggaaacaacttgaccaaaaatc 1013
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 28341048 ttttaaattattagtttttaaaatcagtactttt-aatggaaacaacttgaccaaaaatc 28340990
Query: 1014 tgtcacagaattttgag 1030
|||||||||||||||||
Sbjct: 28340989 tgtcacagaattttgag 28340973
>Sscrofa_ChrX
|| Length = 144288218
Score = 684 bits (345), Expect = 0.0
Identities = 743/872 (85%), Gaps = 14/872 (1%)
Strand = Plus / Plus
Query: 122 ctgcccctccaggacgtctacaaaat-tggtggtattggtacagtccctgtgggccgagt 180
||||| ||||||||| ||| ||||| ||||||||||| ||| ||||| |||| |||||
Sbjct: 103012407 ctgcctctccaggacatctgcaaaaaatggtggtattgatactgtccccatgggtcgagt 103012466
Query: 181 ggagaccggtgttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaac 240
||| || |||||||||| || |||||||||| ||| |||||||||||| |||||||||
Sbjct: 103012467 ggacactggtgttctcagacttggcatggtgctcatctttgctccagttaatgttacaca 103012526
Query: 241 tgaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaa 300
|||||| | ||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 103012527 tgaagtaacatctattgaaatgcaccatgaagctttgaggacagcccttcctgaggacag 103012586
Query: 301 cgtgggctttaatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctgg 360
|||| ||| |||||||| ||| ||||||||||||| |||||| ||| |||||||||
Sbjct: 103012587 tgtggccttcaatgtcaagaacatgtctgtcaaagatgttcgttgtgtcaatgtggccaa 103012646
Query: 361 tgacagcaaaaatgacccac---------ctatggaagcagctggctttacagctcaggt 411
| |||||||||||| ||| | | | |||||||||||||| ||| || ||
Sbjct: 103012647 taacagcaaaaatgccccccagcccccgcccaaagaagcagctggcttcacaaaccaagt 103012706
Query: 412 gattatcctgaaccatcctggccagatcagtgctggttacgcacctgtgctggattgcca 471
||||||| |||||| ||| |||| || ||||||| ||||||||||||||||| ||
Sbjct: 103012707 gattatcttgaaccgtcccagccaactcggtgctggaggtgcacctgtgctggattgtca 103012766
Query: 472 cacagctcacattgcctgcaagtttgctgaactgaaggagaagattgatcgtcgttctgg 531
|||| | || ||| ||||||||||||| ||| |||||||||| | | ||||||
Sbjct: 103012767 tccagcccccactgcttgcaagtttgctgggtggaaagagaagattggtgaccattctgg 103012826
Query: 532 gaaaaagctggaagatggcc-ccaagttcttgaaatctggtgatgctgccattgtcgata 590
||||||||||||||| |||| |||| || || ||||| |||||||| ||||||| ||||
Sbjct: 103012827 gaaaaagctggaagacggcctccaatttttttaaatcgggtgatgcctccattgttgata 103012886
Query: 591 tggttcctggcaagcccatgtgtgttgagagcttctctgactatcctcctctgggccgat 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 103012887 tggttcctggcaagcccatgtgtgttgagagcttctctgactatcctcctctgggtcatt 103012946
Query: 651 ttgctgttcgtgacatgagacagacagttgctgtgggtgtcatcaaagctgtggacaaga 710
||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 103012947 ttgctgttcatgacatgagacagatggttgctgtgggtgtcatcaaagcagtggacaaga 103013006
Query: 711 aggcagctggagctggcaaggtcaccaagtctgctcagaaagctcagaaggctaaatgaa 770
|||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct: 103013007 aggcagctggaggtggcaaggtcaccaagtctgcccagaaagcgctgaaggctaaatgaa 103013066
Query: 771 tattatccccaatacctgccaccccagtcttaatcagtgg--tggaagaacggtctcaga 828
| |||||||||||||| || |||||||||||||||||||| | |||||| ||||||||
Sbjct: 103013067 tgttatccccaatacccgctaccccagtcttaatcagtgggtagaaagaacagtctcaga 103013126
Query: 829 actgtttgtctcaattggccatttaagtttaatagtaaaagactggttaatgataacaat 888
|||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct: 103013127 actgtttgtctcaaatggccgtttaagcttaatagtaaaagactggctaatgataacaac 103013186
Query: 889 gcatcgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttttgtgtgtg 948
|||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 103013187 gcataataaaacctttggaaggaaaggaaaatgttttgtggaccattggttttgtgtgtg 103013246
Query: 949 gcagtttttaagttattagtttttaaaatcag 980
|||| ||||||||| |||||||| ||||||||
Sbjct: 103013247 gcag-ttttaagttgttagttttaaaaatcag 103013277
Score = 383 bits (193), Expect = e-103
Identities = 440/510 (86%), Gaps = 23/510 (4%)
Strand = Plus / Plus
Query: 452 gcacctgtgctggattgccacacagctcacattgcctgc-aagtttgctgaactgaagga 510
||||||||||| ||||| ||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 67392712 gcacctgtgctagattgtcacacagctcacattgcttgccaagtttgctgagctgaag-- 67392769
Query: 511 gaagattgatcgtcgttctgggaaaaagctggaagatggccccaagttcttgaaatctgg 570
|||||||||| | ||| |||| |||||||||||||||||||||| || ||||| || |
Sbjct: 67392770 -aagattgatcattgttttggggaaaagctggaagatggccccaaatttttgaagtcag- 67392827
Query: 571 tgatgctgccattgtcgatatggttcctggcaagcccatgtgtgttgagagcttctctga 630
|||||||||||| || ||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct: 67392828 tgatgctgccatcgttgatatggttcctggccagcccatgtatgttgagaacttctctga 67392887
Query: 631 ctatcctcctctgggcc-gatttgctgttcgtgacatgagacagacagttgctgtgggtg 689
||||||| ||||||||| |||||||||| || ||||||||||| ||||||| ||||
Sbjct: 67392888 ctatcctgctctgggccatttttgctgttcatggcatgagacagattgttgctgcaggtg 67392947
Query: 690 tcatcaaagctgtggacaagaaggcagctggagctggcaaggtcaccaagtctgctcaga 749
||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct: 67392948 ---tcaaagcagtggacaagaaggcagctggagctggcaagttcagtaagtctgcacaga 67393004
Query: 750 aagctcagaaggctaaatgaat-attatccccaatacctgccaccccagtctt-aatcag 807
|| | ||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||
Sbjct: 67393005 aaacccagaaggctaaataaataattatcctcaatacctgccaccccagtcttaaatcag 67393064
Query: 808 tggtggaagaacggtctcagaactgtttgtctcaattggccatttaagtttaatagtaaa 867
|||||||||| ||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct: 67393065 ctgtggaagaactgtctc--aactg--tgtctcaatt----atttaagtttaatagcaaa 67393116
Query: 868 agactggttaatgataacaatgcatcgtaaaaccttcagaaggaaaggagaatgttttgt 927
| ||| |||||||| || ||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 67393117 atactagttaatgaaaatgatgcatcataaaacattcagaaggaa---agaatgttttgt 67393173
Query: 928 ggaccatttgttt-tgtgtgtggcagtttt 956
|||||| |||||| ||||||||||||||||
Sbjct: 67393174 ggaccacttgtttgtgtgtgtggcagtttt 67393203
Score = 168 bits (85), Expect = 4e-39
Identities = 138/152 (90%), Gaps = 4/152 (2%)
Strand = Plus / Minus
Query: 904 cagaaggaaaggagaatgttttgtggaccatttgttttgtgtgtggcagtttttaagtta 963
||||||||||||||||| |||||| | ||||||||||||||||| |||||||| ||||||
Sbjct: 76258749 cagaaggaaaggagaatattttgtaggccatttgttttgtgtgttgcagtttt-aagtta 76258691
Query: 964 ttagtttttaaaatcagtactttttaatggaaacaacttgaccaaaaatctgtcacagaa 1023
||| ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct: 76258690 ttaatttttaaaatcaggactttt-aatggaaatcacttgaccaaaaatctgtcacagaa 76258632
Query: 1024 ttttgagacccattaaaa--aaagtttaatga 1053
|||||| ||| ||||||| ||||||||||||
Sbjct: 76258631 ttttgaaaccaattaaaatgaaagtttaatga 76258600
Score = 157 bits (79), Expect = 2e-35
Identities = 177/209 (84%), Gaps = 3/209 (1%)
Strand = Plus / Plus
Query: 122 ctgcccctccaggacgtctacaaaattggtggtattggtacagtccctgtgggccgagtg 181
|||||| |||||||||| ||||||||||||||| |||||| ||| |||| || ||||
Sbjct: 67392142 ctgcccttccaggacgtttacaaaattggtggtgttggtattgtctctgttggttaagtg 67392201
Query: 182 gagaccggtgttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaact 241
|||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 67392202 aagactggtattctcaaatctggcatggtggtcacctttgctccagtcaacattacaact 67392261
Query: 242 gaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaac 301
||||| ||||| | || ||||||||||||||| |||| ||||||||| |||| | ||
Sbjct: 67392262 gaagtaaagtcagatg---tgcaccatgaagcttagagtaaagcccttcttgggaataat 67392318
Query: 302 gtgggctttaatgtcaaaaacgtgtctgt 330
||||||| |||||||| ||| |||||||
Sbjct: 67392319 ctgggcttcaatgtcaagaacatgtctgt 67392347
Score = 67.9 bits (34), Expect = 1e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 324 tgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccaccta 383
||||||||||||| ||| ||| ||| |||||| ||||| ||||||||||||||||| |
Sbjct: 67392625 tgtctgtcaaagatgtttgtcatgggaatgtgcctggtctcagcaaaaatgacccactga 67392684
Query: 384 tggaagcagc 393
||||||||||
Sbjct: 67392685 tggaagcagc 67392694
>Sscrofa_Chr02
|| Length = 162569375
Score = 551 bits (278), Expect = e-154
Identities = 742/891 (83%), Gaps = 18/891 (2%)
Strand = Plus / Plus
Query: 2 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 61
||||||||| ||| ||| |||||||||||| || ||||||||||||||||||||||
Sbjct: 11960185 atgccttggctcataggaaggaaagtcacccatag-gatggcaatgccagtggaaccaag 11960243
Query: 62 ctgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgc 121
|||| |||||||||||||||||| || ||||||| | |||||||||||||| || |||
Sbjct: 11960244 ctgcctgaagctctggattgcatcctgccaccaagttgtccaactgacaagtccgtgcat 11960303
Query: 122 ctgcccctccaggacgtctacaaaattggtggtattggtacagtccctgtg-ggccgagt 180
|||||||||||||| ||||| | |||||| ||||| || |||||||| || |||||
Sbjct: 11960304 ctgcccctccaggatgtctatagaattggg---attgggactgtccctgttaggtcgagt 11960360
Query: 181 ggagaccggtgttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaac 240
|||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 11960361 ggagactggtgttctaaaacctgacatggtggtcacctttgctccag-caatgttacaac 11960419
Query: 241 tgaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaa 300
||| || ||| ||||||||| | ||| ||||||||| |||||| ||| || ||||
Sbjct: 11960420 caaagaacagactgctgaaatgcatcctgatgctttgagtaaagcccatccgggagaca- 11960478
Query: 301 cgtgggctttaatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctgg 360
||| ||||| || |||| || |||||||||||||| |||| || |||||||||| | |
Sbjct: 11960479 cgttggcttcaacatcaagaaggtgtctgtcaaagatgttcatcatggcaatgtgacgga 11960538
Query: 361 tgacagcaaaaatgacccacctatggaagcagctggctttacagctcaggtgattatcct 420
|||||||||||||||||| || || |||||||||| ||| |||||||| |||| |||| |
Sbjct: 11960539 tgacagcaaaaatgaccctccaattgaagcagctgacttcacagctcaagtga-tatctt 11960597
Query: 421 gaaccatcctggccagatcagtgctggttacgcacctgtgctggattgccacacagctca 480
|||||| || ||||| ||||||||||| || | || | |||| | | | ||||||
Sbjct: 11960598 gaaccacccaggccaaatcagtgctggatatgtccccatcttggactcttatatagctca 11960657
Query: 481 cattgcctgcaagtttgctgaactgaaggagaagattgatcgtcgttctgggaaaaagct 540
|| || ||||||||||| || ||||||||||||||||| ||| | |||| ||||||
Sbjct: 11960658 cagtgactgcaagtttgtcgagctgaaggagaagattgagtgtcatcctggacgaaagct 11960717
Query: 541 ggaagatggccccaagttcttgaaatctggtgatgctgccattgtcgatatggttcctgg 600
||||||||||| || |||||||||||||| ||||||||||||| | ||||||||||||
Sbjct: 11960718 ggaagatggcctgaaactcttgaaatctggtcatgctgccattgttgctatggttcctgg 11960777
Query: 601 caagcccatgtgtgttgagagcttctctgactatcctcctctgggccgatttgctgttcg 660
|||| ||||||||| ||||||| ||||||||||| |||||||||| | ||| ||||| |
Sbjct: 11960778 caagtccatgtgtgctgagagcatctctgactattctcctctgggttgttttactgtttg 11960837
Query: 661 tgacatgagacagacagttgctgtgggtgtcatcaaagctgtggacaagaaggcagctgg 720
|||||| ||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 11960838 tgacataagatagacagttgctgtgggtgtcatcaaagcagtggacaagaagggtgctag 11960897
Query: 721 agctggcaaggtcaccaagtctgctcagaaagctcagaaggctaaatgaatattatcccc 780
|||| |||||| |||||||||||| ||||| | |||| |||||||||| |
Sbjct: 11960898 agcttgcaaggccaccaagtctgcccagaa----------ggtaaaagaatattatctgc 11960947
Query: 781 aatacctgccaccccagtcttaatcagtggtggaagaacggtctcagaactgtttgtctc 840
|||||||||||||||||| |||||| ||||||||||| |||||||||| | |||| |
Sbjct: 11960948 aatacctgccaccccagtattaatctatggtggaagaatggtctcagaattatttgaata 11961007
Query: 841 aattggccatttaagtttaatagtaaaagactggttaatgataacaatgca 891
||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 11961008 aattggccatttaaggttaatagtaaaagactggttaattatagcaatgca 11961058
Score = 272 bits (137), Expect = 4e-70
Identities = 424/519 (81%), Gaps = 8/519 (1%)
Strand = Plus / Minus
Query: 2 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 61
|||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 133457072 atgctttggttccggggatggaaagtcaccggtaaagatggcagtgccagtggaaccaca 133457013
Query: 62 ctgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgc 121
| |||| |||| || |||||| || |||||| || ||||| |||||||| |||||| |
Sbjct: 133457012 cggcttaaagcctggggttgcatcctgccaccagcttgtccacctgacaagaccttgcac 133456953
Query: 122 ctgcccctccaggacgtctacaaaattggtggtattggtacagtccctgtgggccgagtg 181
||||||||||||||| |||| |||||| || | ||||| |||||||| ||||||| |||
Sbjct: 133456952 ctgcccctccaggacatctagaaaattagtaggattggcacagtccccgtgggccaagta 133456893
Query: 182 gagaccggtgttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaact 241
|| || |||||||||| ||||||| ||||||| ||||| |||||| || |||
Sbjct: 133456892 gaaactagtgttctcaatcctggcacagtggtcatctttgttccagt---tg-----act 133456841
Query: 242 gaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaac 301
|||| || ||| |||||||||||||||||||||||||| |||| ||||| ||||| |
Sbjct: 133456840 aaagtgaaatctattgaaatgcaccatgaagctttgagtaaagctcttccaggggatgtc 133456781
Query: 302 gtgggctttaatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggt 361
|||| | | |||||| || ||||||||||||| || ||| ||| ||||||| ||
Sbjct: 133456780 atgggtctcagtgtcaagaatatgtctgtcaaagatattggtcatggtggtgtggctagt 133456721
Query: 362 gacagcaaaaatgacccacctatggaagcagctggctttacagctcaggtgattatcctg 421
||||| |||||||||||||| ||||||| |||||||| | ||||||||||||||||
Sbjct: 133456720 gacagtaaaaatgacccaccagtggaagctgctggcttcatgattcaggtgattatcctg 133456661
Query: 422 aaccatcctggccagatcagtgctggttacgcacctgtgctggattgccacacagctcac 481
|||||||| ||||| |||||||||| | || || |||| || ||||||||||||
Sbjct: 133456660 aaccatccaggccaactcagtgctggatgtacatctttgctcagttttcacacagctcac 133456601
Query: 482 attgcctgcaagtttgctgaactgaaggagaagattgat 520
||||| |||||||||||||| ||||||||||||| ||||
Sbjct: 133456600 attgcttgcaagtttgctgagctgaaggagaagactgat 133456562
Score = 127 bits (64), Expect = 1e-26
Identities = 101/112 (90%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 885 caatgcatcgtaaaaccttcagaaggaaaggagaatgttttgtggaccatttgttttgtg 944
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11961318 caatacatcataaaaccttcatttggaaaggagaatgttttgtggaccatttgttttgtg 11961377
Query: 945 tgtggcagtttttaagttattagtttttaaaatcagtactttttaatggaaa 996
| ||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 11961378 cgcggcag-ttttaagttattagtttttaaaatcagtaccctttaattgaaa 11961428
Score = 113 bits (57), Expect = 2e-22
Identities = 77/81 (95%), Gaps = 2/81 (2%)
Strand = Plus / Minus
Query: 974 aaatcagtactttttaatggaaacaacttgaccaaaaatctgtcacagaattttgagacc 1033
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 11876815 aaatcagtactttttaatggaaacaacttcaccaaaaatctgtcacagaattttg-gacc 11876757
Query: 1034 catta-aaaaaagtttaatga 1053
||||| || ||||||||||||
Sbjct: 11876756 cattacaacaaagtttaatga 11876736
Score = 103 bits (52), Expect = 2e-19
Identities = 166/202 (82%), Gaps = 4/202 (1%)
Strand = Plus / Minus
Query: 747 agaaagctcagaaggctaaatgaatattatccccaatacctgccaccccagtcttaatca 806
||||| |||||||||||||||||||||||| || |||| ||||| || ||||||||||
Sbjct: 133456330 agaaaactcagaaggctaaatgaatattattcctcatac-tgccaacctggtcttaatca 133456272
Query: 807 gtggtggaagaacggtctcagaactgtttgtctcaattggccatttaagtttaatagtaa 866
|||| | |||| | | |||||| ||| |||||||| | ||||||| |||| |||||
Sbjct: 133456271 gtggggtaagagcattttcagaatggttgatctcaatttgtcatttaaatttagtagtag 133456212
Query: 867 aagactggttaatgataacaatgcatcgtaaaaccttcagaaggaaaggagaatgttttg 926
||||||||||| |||||| ||| || ||||||||||| | |||||||||||||||||
Sbjct: 133456211 aagactggttactgataa---tgcgtcataaaaccttcaagaagaaaggagaatgttttg 133456155
Query: 927 tggaccatttgttttgtgtgtg 948
|| || |||| ||||||||||
Sbjct: 133456154 tgaactgtttgctttgtgtgtg 133456133
Score = 83.8 bits (42), Expect = 2e-13
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 919 atgttttgtggaccatttgttttgtgtgtggcagtttttaagttattagtttttaaaatc 978
||||||||||| |||||| ||||||||||||||| ||| |||||| ||||||||||||||
Sbjct: 11877116 atgttttgtgggccatttattttgtgtgtggcagcttt-aagttactagtttttaaaatc 11877058
Query: 979 agtacttttt 988
|||| |||||
Sbjct: 11877057 agtaattttt 11877048
>Sscrofa_Chr12
|| Length = 63588571
Score = 527 bits (266), Expect = e-147
Identities = 698/838 (83%), Gaps = 13/838 (1%)
Strand = Plus / Minus
Query: 5 ccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccacactg 64
|||||||||| |||||||||||||||| |||||||||||||| | |||||||| |||
Sbjct: 48459705 ccttggttcacaggatggaaagtcacccataaagatggcaatgtccatggaaccatgctg 48459646
Query: 65 cttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgcctg 124
|||||||||||||||||||| || ||||| ||| | |||||||||| |||||||| |||
Sbjct: 48459645 cttgaagctctggattgcatcctgccacctacttggccaactgacaggcccttgcatctg 48459586
Query: 125 cccctccaggacgtctacaaaattggtggtattggtacagtccctgtgggccgagtggag 184
|||||| |||| |||||||||||||||||| |||||| ||| || ||| ||||||||
Sbjct: 48459585 cccctc-aggatgtctacaaaattggtggttttggtaatgtctctttggattgagtggag 48459527
Query: 185 accggt--gttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaactg 242
| || |||||||||||||| || |||| ||||||| |||||| ||||||||||||
Sbjct: 48459526 attggctggttctcaaacctggtttgatggttacctttgttccagttgatgttacaactg 48459467
Query: 243 aagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaacg 302
| || || |||| ||||||||| || |||||||| ||||| | |||||||||| || |
Sbjct: 48459466 aggtaaaatctgctgaaatgcatcacaaagctttggatgaagactttcctggggagaatg 48459407
Query: 303 tgggctttaatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggtg 362
||||||||||||| |||||| ||||||||||||| |||| | |||||| ||| ||||||
Sbjct: 48459406 tgggctttaatgtaaaaaacatgtctgtcaaagatgttcattgtggcattgtt-ctggtg 48459348
Query: 363 acagcaaaaatgacccacctatggaagcagctggctttacagctcaggtgattatcctga 422
||||||||||||||||| | |||||||||||||||| | ||||||| |||||||| |||
Sbjct: 48459347 acagcaaaaatgacccatcagtggaagcagctggcttcatagctcagatgattatcttga 48459288
Query: 423 accatcctggccagatcagtgctggttacgcacctgtgctggattgccacacagctcaca 482
||||||| | | ||| ||||||| || || ||||| |||||| || |||
Sbjct: 48459287 accatccacactaaatccgtgctggata--------tggtggatcttcacacaactaaca 48459236
Query: 483 ttgcctgcaagtttgctgaactgaaggagaagattgatcgtcgttctgggaaaaagctgg 542
|| | | ||||| | |||| |||||||||||||| |||| || |||||||||||||||||
Sbjct: 48459235 ttac-tccaagtgttctgagctgaaggagaagatggatcatcattctgggaaaaagctgg 48459177
Query: 543 aagatggccccaagttcttgaaatctggtgatgctgccattgtcgatatggttcctggca 602
|| ||| || ||| |||||||||| || | |||||||||||| || ||||||||||| |
Sbjct: 48459176 aaaatgccctcaaattcttgaaatttgattctgctgccattgttgacatggttcctggta 48459117
Query: 603 agcccatgtgtgttgagagcttctctgactatcctcctctgggccgatttgctgttcgtg 662
|||||| ||||| ||||||||||||| |||||||| |||||| | |||| ||||| ||
Sbjct: 48459116 agcccacgtgtgctgagagcttctctttctatcctcttctgggtcattttgatgttcatg 48459057
Query: 663 acatgagacagacagttgctgtgggtgtcatcaaagctgtggacaagaaggcagctggag 722
|||||||||||| || | |||||||||| | || ||||||||||||||||||||||
Sbjct: 48459056 acatgagacagatgattattatgggtgtcataagagtagtggacaagaaggcagctggag 48458997
Query: 723 ctggcaaggtcaccaagtctgctcagaaagctcagaaggctaaatgaatattatccccaa 782
||||||||||||| || ||||| ||||| |||||||||||||||||||||||| ||||
Sbjct: 48458996 ctggcaaggtcactaactctgcctagaaaactcagaaggctaaatgaatattattcccat 48458937
Query: 783 tacctgccaccccagtcttaatcagtggtggaagaacggtctcagaactgtttgtctc 840
|||||||||| ||||||||||| || |||||||||| || |||||||||| |||||||
Sbjct: 48458936 tacctgccactccagtcttaatgagcggtggaagaatgggctcagaactgcttgtctc 48458879
Score = 155 bits (78), Expect = 6e-35
Identities = 165/190 (86%), Gaps = 3/190 (1%)
Strand = Plus / Minus
Query: 866 aaagactggttaatgataacaatgcatcgtaaaaccttcagaaggaaaggagaatgtttt 925
||||||||||||||||| ||||||||| |||||||||||||||| ||| || || | ||
Sbjct: 48458624 aaagactggttaatgatgacaatgcattgtaaaaccttcagaagagaagaaggatatctt 48458565
Query: 926 gtggaccattt-gttttgtgtgtggcagtttttaagttattagtttttaaaatcagtact 984
||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 48458564 gtggatcattttgttttgtgtgtggcagtttt-aagttgttagtttttaaaatcagtgtt 48458506
Query: 985 ttttaatggaaacaacttgaccaaaaatctgtcacagaattttgagacccattaaaa-aa 1043
||||||||||||||| || ||| | |||| |||||||||||| | ||||||||| ||
Sbjct: 48458505 ctttaatggaaacaacctgttcaagagtctgaaacagaattttgaaatccattaaaacaa 48458446
Query: 1044 agtttaatga 1053
||||||||||
Sbjct: 48458445 agtttaatga 48458436
>Sscrofa_Chr13
|| Length = 218635234
Score = 414 bits (209), Expect = e-113
Identities = 848/1052 (80%), Gaps = 38/1052 (3%)
Strand = Plus / Minus
Query: 2 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 61
||||||| ||||||||||| |||| || || |||||||||||||||||||||||| |||
Sbjct: 11468932 atgccttagttcaagggatagaaa--catccataaagatggcaatgccagtggaactaca 11468875
Query: 62 ctgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgc 121
||| |||||||| || ||||||| || | || ||| |||||||||||||||||||
Sbjct: 11468874 ctgtttgaagctttgaattgcatcctgctac-aacaactccaactgacaagcccttgaaa 11468816
Query: 122 -ctgcccctccaggacgtctacaaaattggtggtattggtacagtccctgtgggccgagt 180
|||| |||||| ||| | ||||||||||||| | |||||| |||| |||
Sbjct: 11468815 tctgctcctccaagaccgccacaaaattggtggcactggtactatccccatgg------- 11468763
Query: 181 ggagaccggtgttctcaaacctggcatggtggtcacctttgctccagtcaatgttacaac 240
|||| |||| |||||||| |||||||||||| |||||| ||||| || ||
Sbjct: 11468762 --agact--tgttttcaaaccttgcatggtggtcaattttgctttagtcagctttgtgac 11468707
Query: 241 tgaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaa 300
|||| | ||||||||| ||||||| ||||| |||||||||||||| ||||||||| || |
Sbjct: 11468706 tgaaataaagtctgtt-aaatgcatcatgaggctttgagtgaagctcttcctgggaacca 11468648
Query: 301 cgtgggctttaatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctgg 360
|||||||| | ||||| || |||||||||||||| |||||| |||||
Sbjct: 11468647 tgtgggcttcagtgtcaggaatgtgtctgtcaaaga---------tggcaacacggctga 11468597
Query: 361 tgacagcaaaaatgacccacctatggaagcagctggctttacagctcaggtgattatcct 420
| |||||||||| ||| ||| |||||||||| ||||| ||||||||| |||||||| |
Sbjct: 11468596 taacagcaaaaa-gactcactgatggaagcagtgggcttcacagctcagctgattatctt 11468538
Query: 421 gaaccatcctggccagatcagtgctggttacgcacctgtgctggattgccacacagctca 480
|| ||||| |||||||||||| |||| || ||| ||||| |||| || ||||||||||
Sbjct: 11468537 gagccatcaaggccagatcagtactggctatgcatctgtgttggactgtcacacagctcg 11468478
Query: 481 cattgcctgcaagtttgctgaactgaaggagaagattgatcgtcgttctgggaaaaagct 540
| | | |||||||||||||| |||||||||||| |||| | | || ||||| | |||
Sbjct: 11468477 ccctacatgcaagtttgctgagctgaaggagaagcatgattgccttttggggaagaggct 11468418
Query: 541 ggaagatggccccaagttcttgaaatctggtgatgctgccattgtcgatatggttcctgg 600
||||||||||||||| ||| |||||||||||||| | || || ||||||||||||||
Sbjct: 11468417 ggaagatggccccaaattccaaaaatctggtgatgccacaatggttgatatggttcctgg 11468358
Query: 601 caagcccatgtgtgttgagagcttctctgactatcctcctctgggccgatttgctgttcg 660
||| || ||||||||| | || ||| | | || ||||||||||| | | || |||| |
Sbjct: 11468357 caaacctatgtgtgttaacagtttccttaaataccctcctctgggtcattctgttgtttg 11468298
Query: 661 tgacatgagacagacagttgctgtgggtgtcatcaaagctgtggacaagaaggcagctgg 720
|||| || |||| |||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 11468297 tgacttgtgacaaacaggtgctgtgggtgtcatcaaaacagtggacaagaaggcagctgg 11468238
Query: 721 agctggcaaggtcaccaagtctgctcagaaagctcagaaggctaaatgaatattatcccc 780
|||||||||||||||||||||||| ||||| || ||||||||||| |||||
Sbjct: 11468237 agctggcaaggtcaccaagtctgcccagaa----ca-----ctaaatgaatactatcctt 11468187
Query: 781 aatacctgccaccccagtcttaatcagtggtggaagaacggtctcagaactgtttgtctc 840
|||| ||||| |||||||||||||| |||||||| | | |||||| |||| ||| ||||
Sbjct: 11468186 aatatttgcca-cccagtcttaatcaatggtggaaaagcagtctcaaaactatttctctc 11468128
Query: 841 aattggccatttaagtttaatagtaaaagactggttaatgataacaatgcatcgtaaaac 900
|| | ||| |||||||| ||| ||||| | ||||||||| || |||||| ||||||
Sbjct: 11468127 aactaaccacctaagtttagcagtcaaagagtagttaatgattactgtgcatcataaaac 11468068
Query: 901 cttcagaaggaaaggagaatgttttgtggaccatttgttttgtgtgtggcagtttttaag 960
||| ||||||||| |||| |||||||||||||||| || ||| |||||||| |||||||
Sbjct: 11468067 cttaagaaggaaaagagagtgttttgtggaccattgtttatgtatgtggcag-ttttaag 11468009
Query: 961 ttattagtttttaaaatcagtactttttaatggaaacaacttgaccaaaaatctgtcaca 1020
|| |||||| | ||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 11468008 ttcttagttccttaaatcagtactttctaatggaaacaacctaaccaaaaatctgtcact 11467949
Query: 1021 gaattttgagacccattaaaa-aaagtttaat 1051
|||||||||||| |||||||| ||||||||||
Sbjct: 11467948 gaattttgagactcattaaaacaaagtttaat 11467917
Score = 210 bits (106), Expect = 1e-51
Identities = 459/577 (79%), Gaps = 31/577 (5%)
Strand = Plus / Minus
Query: 149 ggtggtattggtacagtccctgtgggccgagtggagaccggtgttctcaaacctggcatg 208
|||||||||||||| ||||||||||| || |||||| |||||||||||||| || ||
Sbjct: 805050 ggtggtattggtactgtccctgtgggttgaagggagactggtgttctcaaaccaggtgtg 804991
Query: 209 gtggtcacctttgctccagtcaatgttacaactgaagtcaagtctgttgaaatgcaccat 268
||||||||||||||| || |||||||| ||||||||||||||| |||| |||||
Sbjct: 804990 tcagtcacctttgctccattcgtggttacaaccaaagtcaagtctgttgcaatgaaccat 804931
Query: 269 gaagctttgagtgaagcccttcctggggacaacgtgggctttaatgtcaaaaacgtgtct 328
||||||| || | |||| ||| |||||||||| |||||||| | ||||| || |||||
Sbjct: 804930 gaagctt-gaataaagcactttctggggacaatgtgggcttcactgtcaggaaggtgtca 804872
Query: 329 gtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccacctatggaa 388
| ||| || || || ||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 804871 g----agatgtctgttgtagcagtgtggctggtgacagcaaaaatgacccactgatggaa 804816
Query: 389 gcagctggctttacagctcaggtgattatcctgaaccatcctggccagatcagtgctggt 448
||| ||||||| |||||||| ||||||||| |||||||||| | || |||||| |||
Sbjct: 804815 gcaactggcttcacagctcaagtgattatcttgaaccatccagaacaattcagtgttgga 804756
Query: 449 tacgcacctgtgctggattgccacacagctcacattgcctgcaagtttgctgaactgaag 508
||| ||||||||||||||| | |||||||||| || ||||||||||||| ||||||
Sbjct: 804755 tacacacctgtgctggattattatacagctcacactgttggcaagtttgctgagctgaag 804696
Query: 509 gagaagattgatcgtcgttctgggaaaaagctggaagatggccccaagttcttgaaatct 568
| ||||| |||| ||| ||||| ||||| |||||| |||||
Sbjct: 804695 g-gaagactgattgtc-------------------tgatggtcccaaattcttgtaatct 804656
Query: 569 ggtgatgctgccattgtcgatatggttcctggcaagcccatgtgtgttgagagcttctct 628
|||||||||||||||| |||| ||||||||||||||||| | | |||||||| ||||
Sbjct: 804655 agtgatgctgccattgttgatacagttcctggcaagcccatatatattgagagcagctct 804596
Query: 629 gactatcctcctctgggccgatttgctgttcgtgacatgagacagacagttgctgtgggt 688
|||| |||||||||| | ||||||||| ||||||||||| ||| |||||| | ||
Sbjct: 804595 gact---ctcctctgggttgttttgctgtttgtgacatgagatagatggttgctttatgt 804539
Query: 689 gtcatcaaagctgtggacaagaaggcagctggagctg 725
|||| |||| |||||||||||||||| ||||||||
Sbjct: 804538 gtcaccaaa---gtggacaagaaggcaggtggagctg 804505
Score = 163 bits (82), Expect = 3e-37
Identities = 231/278 (83%), Gaps = 7/278 (2%)
Strand = Plus / Minus
Query: 141 acaaaattggtggtattggtacagtccctgtgggccgagtggagaccggtgttctcaaac 200
|||||||||||||| |||| | |||||| ||| | || ||||| |||||||||||||
Sbjct: 26413371 acaaaattggtggtggtggttctgtccctaagggtcaggttgagactggtgttctcaaac 26413312
Query: 201 ctggcatggtggtcacctttgctccagtcaatgttacaactgaagtcaagtctgttgaaa 260
||||||||||| ||||||||||| | | |||||||||||||||||||||| ||||||
Sbjct: 26413311 ctggcatggtgactccctttgctccaatgagtgttacaactgaagtcaagtctattgaaa 26413252
Query: 261 tgcaccatgaagctttgagtgaagcccttcctggggacaacgtgggctttaatgtcaaaa 320
|| || || |||||||||||| |||||||||||||| |||||||| | |||||| |
Sbjct: 26413251 tgaactgcgatgctttgagtgaaacccttcctggggaccgtgtgggcttcagtgtcaaga 26413192
Query: 321 acgtgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgacccac 380
| ||||| |||| ||| ||| ||||| ||||| | |||||||||||||||||||||
Sbjct: 26413191 atgtgtc-----aagatgtt-gtcatggcagtgtggat-gtgacagcaaaaatgacccac 26413139
Query: 381 ctatggaagcagctggctttacagctcaggtgattatc 418
| |||||||| |||||||| |||||||| |||||||||
Sbjct: 26413138 caatggaagcggctggcttcacagctcaagtgattatc 26413101
Score = 143 bits (72), Expect = 2e-31
Identities = 167/198 (84%), Gaps = 3/198 (1%)
Strand = Plus / Minus
Query: 242 gaagtcaagtctgttgaaatgcaccatgaagctttgagtgaagcccttcctggggacaac 301
|||||||| |||||||||| |||| ||||||| ||| ||| ||||||||||||
Sbjct: 32035207 gaagtcaaatctgttgaaaggcacagggaagcttggaggaaagtgcttcctggggactgt 32035148
Query: 302 gtgggctttaatgtcaaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggt 361
|||||||| |||||||| | |||||||||||||| ||| ||| || || ||||||||||
Sbjct: 32035147 gtgggcttcaatgtcaagagtgtgtctgtcaaagatgtttgtcatgacagtgtggctggt 32035088
Query: 362 gacagcaaaaatgacccacctatggaagcagctggctttacagctcaggtgattatcctg 421
|||||||||||||||||||| ||||||||||||||||| |||||||| || ||| ||
Sbjct: 32035087 gacagcaaaaatgacccaccgatggaagcagctggcttcacagctca---aataatcttg 32035031
Query: 422 aaccatcctggccagatc 439
|||||||| |||||||||
Sbjct: 32035030 aaccatccaggccagatc 32035013
Score = 79.8 bits (40), Expect = 3e-12
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 954 ttttaagttattagtttttaaaatcagtactttttaatggaaacaacttgaccaaaaatc 1013
|||||| || |||||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct: 197725883 ttttaatttcttagtttttaaaatcactactttt-aatggaaacaatacgaacaaaaatc 197725825
Query: 1014 tgtcacagaattttgagacccatt 1037
|||||||||||||| |||| ||||
Sbjct: 197725824 tgtcacagaattttaagacacatt 197725801
Score = 60.0 bits (30), Expect = 3e-06
Identities = 49/54 (90%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 958 aagttattagtttttaaaa-tcagtactttttaatggaaacaacttgaccaaaa 1010
||||||||| ||||||||| |||||| |||| |||||||||||||| |||||||
Sbjct: 49376054 aagttattactttttaaaaatcagtatttttaaatggaaacaacttaaccaaaa 49376001
>Sscrofa_Chr07
|| Length = 134764511
Score = 377 bits (190), Expect = e-102
Identities = 424/501 (84%), Gaps = 17/501 (3%)
Strand = Plus / Minus
Query: 378 cacctatggaagcagctggctttacagctcaggtgattatcctgaaccatcctggccaga 437
|||| ||||||||||||||||| | | |||||||||| ||| ||||| | || ||||| |
Sbjct: 81509545 caccaatggaagcagctggcttcaaaactcaggtgatcatcttgaactacccaggccaaa 81509486
Query: 438 tcagtgctggttacgcacctgtgctggattgccacacagctcacattgcctgcaagtttg 497
|||||||||| ||| ||| ||||||| ||| ||||||||||||||||| ||||||| ||
Sbjct: 81509485 tcagtgctggatacacacatgtgctgaattctcacacagctcacattgcttgcaagtatg 81509426
Query: 498 ctgaactgaaggagaagattgatcgtcgttctgggaaaaagctggaagatggccccaagt 557
|||| || ||| || |||||||| ||| |||||||| ||| ||||||||||||||||| |
Sbjct: 81509425 ctgagctaaagtaggagattgatggtcattctgggagaaatctggaagatggccccaaat 81509366
Query: 558 tcttgaaatctggtgatgctg----ccattgtcgatatggttcctggcaagc--ccatgt 611
||||||||||||||||||||| |||| | ||||||| ||| || | | ||||||
Sbjct: 81509365 tcttgaaatctggtgatgctggctgccatcattgatatggctcccggtatgattccatgt 81509306
Query: 612 gtgttgagagcttctctgactatcctcctctgggccgatttgctgttcgtgacatgagac 671
||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct: 81509305 gtgttgagagcttctctgactatccctctctgggccattttgctgttcatgacatgagac 81509246
Query: 672 agacagttgctgtgggtgtcatcaaagctgtggacaagaaggcagctggagctggcaagg 731
|| ||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||
Sbjct: 81509245 aggcagttgctgtgggtgtcatcaaagcaggggaccagaaggcagctggagctagcaagg 81509186
Query: 732 tcaccaagtctgctcagaaagctcagaaggctaaatgaatattatccccaatacctgcca 791
|||||||||||| |||||||| ||| |||| ||||||||||||| | |||
Sbjct: 81509185 acaccaagtctgcccagaaagccaaga---------gaatgttatccccaatactttcca 81509135
Query: 792 ccccagtcttaatcagtggtggaagaacggtctcagaactgtttgtctcaattggccatt 851
||| | ||||||||||||||||||| |||| |||| || |||||||||||||||| |
Sbjct: 81509134 ccc--attttaatcagtggtggaagaatggtcccagagctatttgtctcaattggccgct 81509077
Query: 852 taagtttaatagtaaaagact 872
|||||||||||||||||||||
Sbjct: 81509076 taagtttaatagtaaaagact 81509056
Score = 246 bits (124), Expect = 2e-62
Identities = 452/552 (81%), Gaps = 17/552 (3%)
Strand = Plus / Minus
Query: 439 cagtgctggttacgcacctgtgctggattgccacacagctcacattgcctgcaagtttgc 498
||||||||| || ||||||||| ||| | | |||||||||||| |||| |||||||| |
Sbjct: 13579494 cagtgctggctaagcacctgtgttgggtggtcacacagctcaccttgctggcaagttttc 13579435
Query: 499 tgaactgaaggagaagattgatcgtcgttctgggaaa-aagctggaagatggccccaagt 557
|| ||||| |||||||||||| || ||||||| || |||||||||||||| | ||| |
Sbjct: 13579434 cgagctgaaagagaagattgatgatcattctggggaagaagctggaagatggtctcaaat 13579375
Query: 558 tcttgaaatctggtgatgctgccattgtcgatatggttcctggcaagcccatgtgtgttg 617
| ||||||| ||||||||||||||| || | |||| ||||| ||| ||||||||||||
Sbjct: 13579374 ttttgaaatatggtgatgctgccatcgttaaagtggtccctggaaaggccatgtgtgttg 13579315
Query: 618 agagcttctctgactatcctcctctgggccgatttgctgttcgtgacatgagacagacag 677
||||| |||| |||| | || |||||||| ||||||||| ||||| ||||| || |
Sbjct: 13579314 agagcatctccaactagcttcttctgggccattttgctgttggtgacttgagatggatgg 13579255
Query: 678 ttgctgtgggtgtcatcaaagctgtggacaagaaggcagctggagctggcaaggtcacca 737
| | |||||||||||| |||| ||| ||||||||| |||||||||||||| |||||||
Sbjct: 13579254 tagttgtgggtgtcataaaagtagtgcacaagaaggtagctggagctggcactgtcacca 13579195
Query: 738 agtctgctcagaaagctcagaaggctaaatgaatattatccccaatacctgccaccccag 797
| || | |||||||||| ||||||||| |||||| || | ||||||||||||| ||
Sbjct: 13579194 aacctccccagaaagctctgaaggctaagtgaata-cat--actatacctgccaccctag 13579138
Query: 798 tcttaatcagtggtggaagaacggtctcagaactgtttgtctcaattggccatttaagtt 857
|||| |||| ||||||||| | ||||||||||||||| |||| |||| || |||
Sbjct: 13579137 ccttagccagttgtggaagaatgttctcagaactgtttg--tcaactggc----taggtt 13579084
Query: 858 taatag-taaaagactggttaatgataacaatgcatcgtaaaaccttcagaaggaaagga 916
||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 13579083 gaatagttgaaagactggtcaatgataacaatgcatcataaaaccttcagaaggaaagga 13579024
Query: 917 ----gaatgttttgtggaccatttgttttgtgtgtggcagtttttaagttattagttttt 972
| ||| ||| ||||||||||||||||||| || || |||||||||| ||||||||
Sbjct: 13579023 aggggcatgctttatggaccatttgttttgtgt-tgaca-attttaagttactagttttt 13578966
Query: 973 aaaatcagtact 984
|| || ||||||
Sbjct: 13578965 aacattagtact 13578954
Score = 188 bits (95), Expect = 4e-45
Identities = 176/203 (86%)
Strand = Plus / Minus
Query: 2 atgccttggttcaagggatggaaagtcacccgtaaagatggcaatgccagtggaaccaca 61
|||||||| ||||| |||| |||||||||| |||||||||| |||||||||||||||
Sbjct: 81510642 atgccttgcttcaaaggatagaaagtcacctgtaaagatgggaatgccagtggaaccttg 81510583
Query: 62 ctgcttgaagctctggattgcattctaccaccaactcgtccaactgacaagcccttgcgc 121
||||||||||||||||||||||| || | |||| | |||||||||||||| ||||| |
Sbjct: 81510582 ctgcttgaagctctggattgcatcctgctaccagtttgtccaactgacaagtccttgtgt 81510523
Query: 122 ctgcccctccaggacgtctacaaaattggtggtattggtacagtccctgtgggccgagtg 181
|||||||||||||| |||||||||||||||| || |||||| ||| |||||| | ||||
Sbjct: 81510522 ctgcccctccaggatgtctacaaaattggtgttagtggtactgtctctgtggatcaagtg 81510463
Query: 182 gagaccggtgttctcaaacctgg 204
|| || |||||||||||||||||
Sbjct: 81510462 gaaactggtgttctcaaacctgg 81510440
Score = 139 bits (70), Expect = 4e-30
Identities = 153/180 (85%), Gaps = 3/180 (1%)
Strand = Plus / Minus
Query: 197 aaacctggcatggtggtcacctttgctccagtcaatgttacaactgaagtcaagtctgtt 256
||||||||| ||||| ||||||||| |||||| |||||||||| |||||| |||| |
Sbjct: 81509985 aaacctggcttggtgatcacctttgttccagtgaatgttacaaatgaagtaaagt---tg 81509929
Query: 257 gaaatgcaccatgaagctttgagtgaagcccttcctggggacaacgtgggctttaatgtc 316
|||||||||||||||||||||||||||| | |||||||||||| |||| || | | ||
Sbjct: 81509928 gaaatgcaccatgaagctttgagtgaaggctttcctggggacagtgtggctttcagtatc 81509869
Query: 317 aaaaacgtgtctgtcaaagacgttcgtcgtggcaatgtggctggtgacagcaaaaatgac 376
| || |||||||||||||| |||| | ||||||||| |||||||||||||| |||||||
Sbjct: 81509868 atgaatgtgtctgtcaaagatgttcattgtggcaatgaggctggtgacagcagaaatgac 81509809
Score = 79.8 bits (40), Expect = 3e-12
Identities = 46/48 (95%)
Strand = Plus / Minus
Query: 345 gtggcaatgtggctggtgacagcaaaaatgacccacctatggaagcag 392
||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 13579539 gtggcaatgtggctggtgacagcaaaaatgacccaccaatggaggcag 13579492
Score = 69.9 bits (35), Expect = 3e-09
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 954 ttttaagttattagtttttaaaatcagtactttttaatggaaacaacttgaccaaaaatc 1013
||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||| ||
Sbjct: 81508678 ttttaagttattagttttt-aaattagtactttttaatg--aacaatttgaccaaacatt 81508622
Query: 1014 tgtcacagaatttt 1027
||||||||| ||||
Sbjct: 81508621 tgtcacagattttt 81508608
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,803,801
Number of extensions: 507
Number of successful extensions: 507
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 130
Length of query: 1118
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1097
Effective length of database: 2,808,413,156
Effective search space: 3080829232132
Effective search space used: 3080829232132
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)