Animal-Genome cDNA 20110601C-001322


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001322
         (1096 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001192487.1| uroporphyrinogen decarboxylase [Bos taurus].      579   e-165
Alignment   gi|XP_002686475.1| PREDICTED: uroporphyrinogen decarboxylase [B...   579   e-165

>ref|NP_001192487.1| uroporphyrinogen decarboxylase [Bos taurus].
          Length = 367

 Score =  579 bits (1493), Expect = e-165
 Identities = 293/346 (84%), Positives = 301/346 (86%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            MEA ES PQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1    MEAKESRPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                ATVASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGS+TM+QAKRW
Sbjct: 121  LQDPATVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMSQAKRW 180

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQRPQASHQLLRILTDALVPY              FESHAGHLGPQLF+KFALPYIRDV
Sbjct: 181  LYQRPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFSKFALPYIRDV 240

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
            +KRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGKTVT
Sbjct: 241  SKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKTVT 300

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            LQGNLDPCALYASEEEIG+LVQQML+DFG    +   G    PDMD
Sbjct: 301  LQGNLDPCALYASEEEIGKLVQQMLNDFGPQRYIANLGHGLYPDMD 346


>ref|XP_002686475.1| PREDICTED: uroporphyrinogen decarboxylase [Bos taurus].
          Length = 367

 Score =  579 bits (1493), Expect = e-165
 Identities = 293/346 (84%), Positives = 301/346 (86%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            MEA ES PQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1    MEAKESRPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                ATVASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGS+TM+QAKRW
Sbjct: 121  LQDPATVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMSQAKRW 180

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQRPQASHQLLRILTDALVPY              FESHAGHLGPQLF+KFALPYIRDV
Sbjct: 181  LYQRPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFSKFALPYIRDV 240

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
            +KRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGKTVT
Sbjct: 241  SKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKTVT 300

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            LQGNLDPCALYASEEEIG+LVQQML+DFG    +   G    PDMD
Sbjct: 301  LQGNLDPCALYASEEEIGKLVQQMLNDFGPQRYIANLGHGLYPDMD 346


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,166,201
Number of extensions: 1604045
Number of successful extensions: 6393
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6371
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001322
         (1096 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532602.2| PREDICTED: similar to Uroporphyrinogen decarbox...   558   e-159
Alignment   gi|XP_861894.1| PREDICTED: similar to Uroporphyrinogen decarbox...   510   e-144
Alignment   gi|XP_861812.1| PREDICTED: similar to Uroporphyrinogen decarbox...   496   e-140
Alignment   gi|XP_861922.1| PREDICTED: similar to Uroporphyrinogen decarbox...   468   e-132
Alignment   gi|XP_861837.1| PREDICTED: similar to Uroporphyrinogen decarbox...   378   e-105
Alignment   gi|XP_861870.1| PREDICTED: similar to Uroporphyrinogen decarbox...   333   2e-91

>ref|XP_532602.2| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
            isoform 1 [Canis familiaris].
          Length = 364

 Score =  558 bits (1438), Expect = e-159
 Identities = 283/346 (81%), Positives = 294/346 (84%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            ME N  G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1    METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                A VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYM+EGG S+TMAQAKRW
Sbjct: 121  LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMIEGGSSSTMAQAKRW 180

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQ+PQASHQLLRILTDALVPY              FESHAGHLGPQLFNKFALPY+RDV
Sbjct: 181  LYQKPQASHQLLRILTDALVPYLVGQVAAGAQL---FESHAGHLGPQLFNKFALPYVRDV 237

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
            AKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGK VT
Sbjct: 238  AKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKMVT 297

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            LQGNLDPCALYASEEEIG+LVQ+ML DFG    +   G    PDMD
Sbjct: 298  LQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 343


>ref|XP_861894.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
            isoform 5 [Canis familiaris].
          Length = 346

 Score =  510 bits (1313), Expect = e-144
 Identities = 262/346 (75%), Positives = 273/346 (78%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            ME N  G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1    METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQ                     ALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQ---------------------ALGMEVTMVPGKGPSFPEPLREERDLER 99

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                A VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYM+EGG S+TMAQAKRW
Sbjct: 100  LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMIEGGSSSTMAQAKRW 159

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQ+PQASHQLLRILTDALVPY              FESHAGHLGPQLFNKFALPY+RDV
Sbjct: 160  LYQKPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFNKFALPYVRDV 219

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
            AKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGK VT
Sbjct: 220  AKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKMVT 279

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            LQGNLDPCALYASEEEIG+LVQ+ML DFG    +   G    PDMD
Sbjct: 280  LQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 325


>ref|XP_861812.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
            isoform 2 [Canis familiaris].
          Length = 332

 Score =  496 bits (1276), Expect = e-140
 Identities = 253/311 (81%), Positives = 263/311 (84%), Gaps = 1/311 (0%)
 Frame = +2

Query: 167  MRQAGRYLPEFRETRAAQDFFSTCRSPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALG 346
            MRQAGRYLPEF+ETRAAQDFFSTCRSPE CCELTLQPLRRFPLDAAIIFSDILVVPQALG
Sbjct: 1    MRQAGRYLPEFKETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSDILVVPQALG 60

Query: 347  MEVTMVPGKGPSFXXXXXXXXXXXXXXXXATVASELDYVFQAITLTRQRLAGRVPLIGFA 526
            MEVTMVPGKGPSF                A VASEL YVFQAITLTRQRLAGRVPLIGFA
Sbjct: 61   MEVTMVPGKGPSFPEPLREERDLERLRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFA 120

Query: 527  GAPWTLMTYMVEGGGSNTMAQAKRWLYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXX 706
            GAPWTLMTYM+EGG S+TMAQAKRWLYQ+PQASHQLLRILTDALVPY             
Sbjct: 121  GAPWTLMTYMIEGGSSSTMAQAKRWLYQKPQASHQLLRILTDALVPYLVGQVAAGAQALQ 180

Query: 707  XFESHAGHLGPQLFNKFALPYIRDVAKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQA 886
             FESHAGHLGPQLFNKFALPY+RDVAKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQA
Sbjct: 181  LFESHAGHLGPQLFNKFALPYVRDVAKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQA 240

Query: 887  GYEVVGLDWTVAPEKARDRVGKTVTLQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLP 1066
            GYEVVGLDWTVAPEKAR+RVGK VTLQGNLDPCALYASEEEIG+LVQ+ML DFG    + 
Sbjct: 241  GYEVVGLDWTVAPEKARERVGKMVTLQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIA 300

Query: 1067 T-GARTLPDMD 1096
              G    PDMD
Sbjct: 301  NLGHGLYPDMD 311


>ref|XP_861922.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
            isoform 6 [Canis familiaris].
          Length = 321

 Score =  468 bits (1205), Expect = e-132
 Identities = 248/346 (71%), Positives = 259/346 (74%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            ME N  G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1    METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                A VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYM+EGG S+TMAQAKRW
Sbjct: 121  LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMIEGGSSSTMAQAKRW 180

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQ+PQASHQLLRILTDALVPY                                     +
Sbjct: 181  LYQKPQASHQLLRILTDALVPY-------------------------------------L 203

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
              +V AG Q         IIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGK VT
Sbjct: 204  VGQVAAGAQ---------IIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKMVT 254

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            LQGNLDPCALYASEEEIG+LVQ+ML DFG    +   G    PDMD
Sbjct: 255  LQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 300


>ref|XP_861837.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
            isoform 3 [Canis familiaris].
          Length = 272

 Score =  378 bits (971), Expect = e-105
 Identities = 195/251 (77%), Positives = 204/251 (81%), Gaps = 1/251 (0%)
 Frame = +2

Query: 347  MEVTMVPGKGPSFXXXXXXXXXXXXXXXXATVASELDYVFQAITLTRQRLAGRVPLIGFA 526
            MEVTMVPGKGPSF                A VASEL YVFQAITLTRQRLAGRVPLIGFA
Sbjct: 1    MEVTMVPGKGPSFPEPLREERDLERLRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFA 60

Query: 527  GAPWTLMTYMVEGGGSNTMAQAKRWLYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXX 706
            GAPWTLMTYM+EGG S+TMAQAKRWLYQ+PQASHQLLRILTDALVPY             
Sbjct: 61   GAPWTLMTYMIEGGSSSTMAQAKRWLYQKPQASHQLLRILTDALVPYLVGQVAAGAQALQ 120

Query: 707  XFESHAGHLGPQLFNKFALPYIRDVAKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQA 886
             FESHAGHLGPQLFNKFALPY+RDVAKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQA
Sbjct: 121  LFESHAGHLGPQLFNKFALPYVRDVAKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQA 180

Query: 887  GYEVVGLDWTVAPEKARDRVGKTVTLQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLP 1066
            GYEVVGLDWTVAPEKAR+RVGK VTLQGNLDPCALYASEEEIG+LVQ+ML DFG    + 
Sbjct: 181  GYEVVGLDWTVAPEKARERVGKMVTLQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIA 240

Query: 1067 T-GARTLPDMD 1096
              G    PDMD
Sbjct: 241  NLGHGLYPDMD 251


>ref|XP_861870.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
            isoform 4 [Canis familiaris].
          Length = 313

 Score =  333 bits (853), Expect = 2e-91
 Identities = 199/347 (57%), Positives = 211/347 (60%), Gaps = 2/347 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            ME N  G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1    METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                A VASEL YVFQAITLTRQRLAGRVPLIGFAGAP  L  +    G        K  
Sbjct: 121  LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAP-ALQLFESHAGHLGPQLFNKFA 179

Query: 602  L-YQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRD 778
            L Y R  A     R+    L P                 +  GH        FAL  +  
Sbjct: 180  LPYVRDVAKRVKARVQEAGLAPVPMIIF-----------AKDGH--------FALEEL-- 218

Query: 779  VAKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTV 958
                 +AG +  GL                             DWTVAPEKAR+RVGK V
Sbjct: 219  ----AQAGYEVVGL-----------------------------DWTVAPEKARERVGKMV 245

Query: 959  TLQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            TLQGNLDPCALYASEEEIG+LVQ+ML DFG    +   G    PDMD
Sbjct: 246  TLQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 292


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,075,161
Number of extensions: 1640235
Number of successful extensions: 6289
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6260
Number of HSP's successfully gapped: 8
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001322
         (1096 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000365.3| uroporphyrinogen decarboxylase [Homo sapiens].       570   e-163

>ref|NP_000365.3| uroporphyrinogen decarboxylase [Homo sapiens].
          Length = 367

 Score =  570 bits (1470), Expect = e-163
 Identities = 290/346 (83%), Positives = 296/346 (85%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            MEAN  GPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1    MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                  VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGS+TMAQAKRW
Sbjct: 121  LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW 180

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQRPQASHQLLRILTDALVPY              FESHAGHLGPQLFNKFALPYIRDV
Sbjct: 181  LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV 240

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
            AK+VKA L+EAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAP+KAR+ VGKTVT
Sbjct: 241  AKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVT 300

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFG-HSATLPTGARTLPDMD 1096
            LQGNLDPCALYASEEEIGQLV+QML DFG H      G    PDMD
Sbjct: 301  LQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMD 346


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,123,967
Number of extensions: 1610837
Number of successful extensions: 5982
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5963
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001322
         (1096 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033504.2| uroporphyrinogen decarboxylase [Mus musculus].       555   e-158

>ref|NP_033504.2| uroporphyrinogen decarboxylase [Mus musculus].
          Length = 367

 Score =  555 bits (1429), Expect = e-158
 Identities = 282/346 (81%), Positives = 291/346 (84%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            MEAN  G Q FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1    MEANGFGLQNFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                A  ASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGG S+TMAQAKRW
Sbjct: 121  LRDPAAAASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGSSSTMAQAKRW 180

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQRPQASH+LL ILTD LVPY              FESHAGHLG +LF+KFALPYIRDV
Sbjct: 181  LYQRPQASHKLLGILTDVLVPYLIGQVAAGAQALQLFESHAGHLGTELFSKFALPYIRDV 240

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
            AKRVKAGLQ+AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAP+KAR+RVGK VT
Sbjct: 241  AKRVKAGLQKAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARERVGKAVT 300

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            LQGNLDPCALYASEEEIG+LVQQML DFG    +   G    PDMD
Sbjct: 301  LQGNLDPCALYASEEEIGRLVQQMLDDFGPQRYIANLGHGLYPDMD 346


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,048,797
Number of extensions: 1334872
Number of successful extensions: 4771
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4748
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001322
         (1096 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128097.1| PREDICTED: uroporphyrinogen decarboxylase-li...   597   e-171

>ref|XP_003128097.1| PREDICTED: uroporphyrinogen decarboxylase-like [Sus scrofa].
          Length = 367

 Score =  597 bits (1539), Expect = e-171
 Identities = 303/346 (87%), Positives = 304/346 (87%), Gaps = 1/346 (0%)
 Frame = +2

Query: 62   MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
            MEA ESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1    MEATESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60

Query: 242  SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
            SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF            
Sbjct: 61   SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120

Query: 422  XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
                ATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW
Sbjct: 121  LRDPATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 180

Query: 602  LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
            LYQRPQASHQLLRILTDALVPY              FESHAGHLGPQLFNKFALPYIRDV
Sbjct: 181  LYQRPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFNKFALPYIRDV 240

Query: 782  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
            AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT
Sbjct: 241  AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 300

Query: 962  LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
            LQGNLDPCALYASEEEIGQLVQQMLSDFG    +   G    PDMD
Sbjct: 301  LQGNLDPCALYASEEEIGQLVQQMLSDFGPQRYIANLGHGLYPDMD 346


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,421,416
Number of extensions: 1037752
Number of successful extensions: 4117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4103
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001322
         (1096 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         400   e-109

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  400 bits (202), Expect = e-109
 Identities = 202/202 (100%)
 Strand = Plus / Minus

                                                                             
Query: 334       ccaggcactgggcatggaggtgactatggtgcctggcaaagggcccagcttcccagagcc 393
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913614 ccaggcactgggcatggaggtgactatggtgcctggcaaagggcccagcttcccagagcc 153913555

                                                                             
Query: 394       attacgagaagagcgagacttagagcgcctccgggacccagcaacagtggcctctgagct 453
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913554 attacgagaagagcgagacttagagcgcctccgggacccagcaacagtggcctctgagct 153913495

                                                                             
Query: 454       ggactatgtgttccaggccatcaccctcactcggcaacgactggctgggcgagtgccact 513
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913494 ggactatgtgttccaggccatcaccctcactcggcaacgactggctgggcgagtgccact 153913435

                                       
Query: 514       gattggctttgctggtgccccg 535
                 ||||||||||||||||||||||
Sbjct: 153913434 gattggctttgctggtgccccg 153913413



 Score =  317 bits (160), Expect = 7e-84
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                             
Query: 535       gtggactctgatgacatacatggttgagggtggcggctcaaacaccatggctcaggccaa 594
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913287 gtggactctgatgacatacatggttgagggtggcggctcaaacaccatggctcaggccaa 153913228

                                                                             
Query: 595       gcgctggctttaccagaggccgcaggccagtcaccagctgcttcgcatcctcactgatgc 654
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913227 gcgctggctttaccagaggccgcaggccagtcaccagctgcttcgcatcctcactgatgc 153913168

                                                             
Query: 655       tcttgtcccgtacctggtgggacaggtggctgctggtgcccagg 698
                 ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 153913167 tcttgtcccatacctggtgggacaggtggctgctggtgcccagg 153913124



 Score =  280 bits (141), Expect = 2e-72
 Identities = 141/141 (100%)
 Strand = Plus / Minus

                                                                             
Query: 695       caggcattgcagctctttgagtcccatgcagggcatcttggcccacagctcttcaataaa 754
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912797 caggcattgcagctctttgagtcccatgcagggcatcttggcccacagctcttcaataaa 153912738

                                                                             
Query: 755       tttgcactgccctacatccgtgatgtggccaagcgagtgaaggccgggctgcaggaggca 814
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912737 tttgcactgccctacatccgtgatgtggccaagcgagtgaaggccgggctgcaggaggca 153912678

                                      
Query: 815       ggcctggcaccagtgcccatg 835
                 |||||||||||||||||||||
Sbjct: 153912677 ggcctggcaccagtgcccatg 153912657



 Score =  226 bits (114), Expect = 2e-56
 Identities = 114/114 (100%)
 Strand = Plus / Minus

                                                                             
Query: 81        gtccccagggttttccggagctgaagaatgacaccttcctgcgagcagcctggggagaag 140
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153914281 gtccccagggttttccggagctgaagaatgacaccttcctgcgagcagcctggggagaag 153914222

                                                                       
Query: 141       aaacagactacactccggtttggtgcatgcggcaggcaggccgctacttaccag 194
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153914221 aaacagactacactccggtttggtgcatgcggcaggcaggccgctacttaccag 153914168



 Score =  204 bits (103), Expect = 7e-50
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                             
Query: 835       gatcatctttgctaaggatggacattttgccctggaggaactggcccaggctggctacga 894
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912491 gatcatctttgctaaggatggacattttgccctggaggaactggcccaggctggctacga 153912432

                                                            
Query: 895       ggtggttgggcttgactggacagtggctccagagaaagcccgg 937
                 |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912431 ggtggttgggcttgactggacagtggctccagagaaagcccgg 153912389



 Score =  165 bits (83), Expect = 6e-38
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                             
Query: 192       cagagtttagggaaaccagggctgcccaggactttttcagcacctgtcgatctccagagg 251
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153914047 cagagtttagggaaaccagggctgcccaggactttttcagcacctgtcgatctccagagg 153913988

                                        
Query: 252       tgtgctgtgaactgacgctgcag 274
                 |||||||||||||||||||||||
Sbjct: 153913987 tgtgctgtgaactgacgctgcag 153913965



 Score =  161 bits (81), Expect = 1e-36
 Identities = 81/81 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         gggggcgggcgcagactcaggttttagtggggacccggctcgcgtttacagacagctgat 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153915013 gggggcgggcgcagactcaggttttagtggggacccggctcgcgtttacagacagctgat 153914954

                                      
Query: 61        catggaggcgaacgagtctgg 81
                 |||||||||||||||||||||
Sbjct: 153914953 catggaggcgaacgagtctgg 153914933



 Score =  137 bits (69), Expect = 1e-29
 Identities = 69/69 (100%)
 Strand = Plus / Minus

                                                                             
Query: 936       gggaccgtgtggggaagacagtgaccctgcagggcaacctggacccctgtgccctgtatg 995
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912302 gggaccgtgtggggaagacagtgaccctgcagggcaacctggacccctgtgccctgtatg 153912243

                          
Query: 996       catctgagg 1004
                 |||||||||
Sbjct: 153912242 catctgagg 153912234



 Score =  131 bits (66), Expect = 9e-28
 Identities = 93/98 (94%), Gaps = 3/98 (3%)
 Strand = Plus / Minus

                                                                             
Query: 1002      aggaggaaattggacagctggtgcagcagatgctcagtgactttggg-cacagcgctaca 1060
                 ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 153911887 aggaggagattggacagctggtgcagcagatgctcagtgactttgggccacagcgctaca 153911828

                                                       
Query: 1061      ttgccaa-ctggggcacggacttta-cctgacatggac 1096
                 ||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 153911827 ttgccaacctgggccacggactttaccctgacatggac 153911790



 Score =  131 bits (66), Expect = 9e-28
 Identities = 66/66 (100%)
 Strand = Plus / Minus

                                                                             
Query: 273       agccactgcgtcgcttccccctggatgctgccatcatcttctccgacatcctcgttgtac 332
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913889 agccactgcgtcgcttccccctggatgctgccatcatcttctccgacatcctcgttgtac 153913830

                       
Query: 333       cccagg 338
                 ||||||
Sbjct: 153913829 cccagg 153913824


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,748,499
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 10
Length of query: 1096
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1075
Effective length of database: 2,808,413,156
Effective search space: 3019044142700
Effective search space used: 3019044142700
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)