Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001322
(1096 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192487.1| uroporphyrinogen decarboxylase [Bos taurus]. 579 e-165
Alignment gi|XP_002686475.1| PREDICTED: uroporphyrinogen decarboxylase [B... 579 e-165
>ref|NP_001192487.1| uroporphyrinogen decarboxylase [Bos taurus].
Length = 367
Score = 579 bits (1493), Expect = e-165
Identities = 293/346 (84%), Positives = 301/346 (86%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
MEA ES PQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1 MEAKESRPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
ATVASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGS+TM+QAKRW
Sbjct: 121 LQDPATVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMSQAKRW 180
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQRPQASHQLLRILTDALVPY FESHAGHLGPQLF+KFALPYIRDV
Sbjct: 181 LYQRPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFSKFALPYIRDV 240
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
+KRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGKTVT
Sbjct: 241 SKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKTVT 300
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
LQGNLDPCALYASEEEIG+LVQQML+DFG + G PDMD
Sbjct: 301 LQGNLDPCALYASEEEIGKLVQQMLNDFGPQRYIANLGHGLYPDMD 346
>ref|XP_002686475.1| PREDICTED: uroporphyrinogen decarboxylase [Bos taurus].
Length = 367
Score = 579 bits (1493), Expect = e-165
Identities = 293/346 (84%), Positives = 301/346 (86%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
MEA ES PQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1 MEAKESRPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
ATVASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGS+TM+QAKRW
Sbjct: 121 LQDPATVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMSQAKRW 180
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQRPQASHQLLRILTDALVPY FESHAGHLGPQLF+KFALPYIRDV
Sbjct: 181 LYQRPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFSKFALPYIRDV 240
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
+KRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGKTVT
Sbjct: 241 SKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKTVT 300
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
LQGNLDPCALYASEEEIG+LVQQML+DFG + G PDMD
Sbjct: 301 LQGNLDPCALYASEEEIGKLVQQMLNDFGPQRYIANLGHGLYPDMD 346
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,166,201
Number of extensions: 1604045
Number of successful extensions: 6393
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6371
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001322
(1096 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532602.2| PREDICTED: similar to Uroporphyrinogen decarbox... 558 e-159
Alignment gi|XP_861894.1| PREDICTED: similar to Uroporphyrinogen decarbox... 510 e-144
Alignment gi|XP_861812.1| PREDICTED: similar to Uroporphyrinogen decarbox... 496 e-140
Alignment gi|XP_861922.1| PREDICTED: similar to Uroporphyrinogen decarbox... 468 e-132
Alignment gi|XP_861837.1| PREDICTED: similar to Uroporphyrinogen decarbox... 378 e-105
Alignment gi|XP_861870.1| PREDICTED: similar to Uroporphyrinogen decarbox... 333 2e-91
>ref|XP_532602.2| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
isoform 1 [Canis familiaris].
Length = 364
Score = 558 bits (1438), Expect = e-159
Identities = 283/346 (81%), Positives = 294/346 (84%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
ME N G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1 METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
A VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYM+EGG S+TMAQAKRW
Sbjct: 121 LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMIEGGSSSTMAQAKRW 180
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQ+PQASHQLLRILTDALVPY FESHAGHLGPQLFNKFALPY+RDV
Sbjct: 181 LYQKPQASHQLLRILTDALVPYLVGQVAAGAQL---FESHAGHLGPQLFNKFALPYVRDV 237
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
AKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGK VT
Sbjct: 238 AKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKMVT 297
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
LQGNLDPCALYASEEEIG+LVQ+ML DFG + G PDMD
Sbjct: 298 LQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 343
>ref|XP_861894.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
isoform 5 [Canis familiaris].
Length = 346
Score = 510 bits (1313), Expect = e-144
Identities = 262/346 (75%), Positives = 273/346 (78%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
ME N G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1 METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQ ALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQ---------------------ALGMEVTMVPGKGPSFPEPLREERDLER 99
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
A VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYM+EGG S+TMAQAKRW
Sbjct: 100 LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMIEGGSSSTMAQAKRW 159
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQ+PQASHQLLRILTDALVPY FESHAGHLGPQLFNKFALPY+RDV
Sbjct: 160 LYQKPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFNKFALPYVRDV 219
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
AKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGK VT
Sbjct: 220 AKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKMVT 279
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
LQGNLDPCALYASEEEIG+LVQ+ML DFG + G PDMD
Sbjct: 280 LQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 325
>ref|XP_861812.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
isoform 2 [Canis familiaris].
Length = 332
Score = 496 bits (1276), Expect = e-140
Identities = 253/311 (81%), Positives = 263/311 (84%), Gaps = 1/311 (0%)
Frame = +2
Query: 167 MRQAGRYLPEFRETRAAQDFFSTCRSPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALG 346
MRQAGRYLPEF+ETRAAQDFFSTCRSPE CCELTLQPLRRFPLDAAIIFSDILVVPQALG
Sbjct: 1 MRQAGRYLPEFKETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSDILVVPQALG 60
Query: 347 MEVTMVPGKGPSFXXXXXXXXXXXXXXXXATVASELDYVFQAITLTRQRLAGRVPLIGFA 526
MEVTMVPGKGPSF A VASEL YVFQAITLTRQRLAGRVPLIGFA
Sbjct: 61 MEVTMVPGKGPSFPEPLREERDLERLRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFA 120
Query: 527 GAPWTLMTYMVEGGGSNTMAQAKRWLYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXX 706
GAPWTLMTYM+EGG S+TMAQAKRWLYQ+PQASHQLLRILTDALVPY
Sbjct: 121 GAPWTLMTYMIEGGSSSTMAQAKRWLYQKPQASHQLLRILTDALVPYLVGQVAAGAQALQ 180
Query: 707 XFESHAGHLGPQLFNKFALPYIRDVAKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQA 886
FESHAGHLGPQLFNKFALPY+RDVAKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQA
Sbjct: 181 LFESHAGHLGPQLFNKFALPYVRDVAKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQA 240
Query: 887 GYEVVGLDWTVAPEKARDRVGKTVTLQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLP 1066
GYEVVGLDWTVAPEKAR+RVGK VTLQGNLDPCALYASEEEIG+LVQ+ML DFG +
Sbjct: 241 GYEVVGLDWTVAPEKARERVGKMVTLQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIA 300
Query: 1067 T-GARTLPDMD 1096
G PDMD
Sbjct: 301 NLGHGLYPDMD 311
>ref|XP_861922.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
isoform 6 [Canis familiaris].
Length = 321
Score = 468 bits (1205), Expect = e-132
Identities = 248/346 (71%), Positives = 259/346 (74%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
ME N G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1 METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
A VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYM+EGG S+TMAQAKRW
Sbjct: 121 LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMIEGGSSSTMAQAKRW 180
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQ+PQASHQLLRILTDALVPY +
Sbjct: 181 LYQKPQASHQLLRILTDALVPY-------------------------------------L 203
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
+V AG Q IIFAKDGHFALEELAQAGYEVVGLDWTVAPEKAR+RVGK VT
Sbjct: 204 VGQVAAGAQ---------IIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARERVGKMVT 254
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
LQGNLDPCALYASEEEIG+LVQ+ML DFG + G PDMD
Sbjct: 255 LQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 300
>ref|XP_861837.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
isoform 3 [Canis familiaris].
Length = 272
Score = 378 bits (971), Expect = e-105
Identities = 195/251 (77%), Positives = 204/251 (81%), Gaps = 1/251 (0%)
Frame = +2
Query: 347 MEVTMVPGKGPSFXXXXXXXXXXXXXXXXATVASELDYVFQAITLTRQRLAGRVPLIGFA 526
MEVTMVPGKGPSF A VASEL YVFQAITLTRQRLAGRVPLIGFA
Sbjct: 1 MEVTMVPGKGPSFPEPLREERDLERLRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFA 60
Query: 527 GAPWTLMTYMVEGGGSNTMAQAKRWLYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXX 706
GAPWTLMTYM+EGG S+TMAQAKRWLYQ+PQASHQLLRILTDALVPY
Sbjct: 61 GAPWTLMTYMIEGGSSSTMAQAKRWLYQKPQASHQLLRILTDALVPYLVGQVAAGAQALQ 120
Query: 707 XFESHAGHLGPQLFNKFALPYIRDVAKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQA 886
FESHAGHLGPQLFNKFALPY+RDVAKRVKA +QEAGLAPVPMIIFAKDGHFALEELAQA
Sbjct: 121 LFESHAGHLGPQLFNKFALPYVRDVAKRVKARVQEAGLAPVPMIIFAKDGHFALEELAQA 180
Query: 887 GYEVVGLDWTVAPEKARDRVGKTVTLQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLP 1066
GYEVVGLDWTVAPEKAR+RVGK VTLQGNLDPCALYASEEEIG+LVQ+ML DFG +
Sbjct: 181 GYEVVGLDWTVAPEKARERVGKMVTLQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIA 240
Query: 1067 T-GARTLPDMD 1096
G PDMD
Sbjct: 241 NLGHGLYPDMD 251
>ref|XP_861870.1| PREDICTED: similar to Uroporphyrinogen decarboxylase (URO-D) (UPD)
isoform 4 [Canis familiaris].
Length = 313
Score = 333 bits (853), Expect = 2e-91
Identities = 199/347 (57%), Positives = 211/347 (60%), Gaps = 2/347 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
ME N G QGFPELKNDTFLRAAWGE+TDYTPVWCMRQAGRYLPEF+ETRAAQDFFSTCR
Sbjct: 1 METNGLGSQGFPELKNDTFLRAAWGEDTDYTPVWCMRQAGRYLPEFKETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
A VASEL YVFQAITLTRQRLAGRVPLIGFAGAP L + G K
Sbjct: 121 LRDPAAVASELGYVFQAITLTRQRLAGRVPLIGFAGAP-ALQLFESHAGHLGPQLFNKFA 179
Query: 602 L-YQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRD 778
L Y R A R+ L P + GH FAL +
Sbjct: 180 LPYVRDVAKRVKARVQEAGLAPVPMIIF-----------AKDGH--------FALEEL-- 218
Query: 779 VAKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTV 958
+AG + GL DWTVAPEKAR+RVGK V
Sbjct: 219 ----AQAGYEVVGL-----------------------------DWTVAPEKARERVGKMV 245
Query: 959 TLQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
TLQGNLDPCALYASEEEIG+LVQ+ML DFG + G PDMD
Sbjct: 246 TLQGNLDPCALYASEEEIGRLVQKMLDDFGPQRYIANLGHGLYPDMD 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,075,161
Number of extensions: 1640235
Number of successful extensions: 6289
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6260
Number of HSP's successfully gapped: 8
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001322
(1096 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000365.3| uroporphyrinogen decarboxylase [Homo sapiens]. 570 e-163
>ref|NP_000365.3| uroporphyrinogen decarboxylase [Homo sapiens].
Length = 367
Score = 570 bits (1470), Expect = e-163
Identities = 290/346 (83%), Positives = 296/346 (85%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
MEAN GPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1 MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
VASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGS+TMAQAKRW
Sbjct: 121 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW 180
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQRPQASHQLLRILTDALVPY FESHAGHLGPQLFNKFALPYIRDV
Sbjct: 181 LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV 240
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
AK+VKA L+EAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAP+KAR+ VGKTVT
Sbjct: 241 AKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVT 300
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFG-HSATLPTGARTLPDMD 1096
LQGNLDPCALYASEEEIGQLV+QML DFG H G PDMD
Sbjct: 301 LQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMD 346
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,123,967
Number of extensions: 1610837
Number of successful extensions: 5982
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5963
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001322
(1096 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033504.2| uroporphyrinogen decarboxylase [Mus musculus]. 555 e-158
>ref|NP_033504.2| uroporphyrinogen decarboxylase [Mus musculus].
Length = 367
Score = 555 bits (1429), Expect = e-158
Identities = 282/346 (81%), Positives = 291/346 (84%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
MEAN G Q FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1 MEANGFGLQNFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPE CCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
A ASEL YVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGG S+TMAQAKRW
Sbjct: 121 LRDPAAAASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGSSSTMAQAKRW 180
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQRPQASH+LL ILTD LVPY FESHAGHLG +LF+KFALPYIRDV
Sbjct: 181 LYQRPQASHKLLGILTDVLVPYLIGQVAAGAQALQLFESHAGHLGTELFSKFALPYIRDV 240
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
AKRVKAGLQ+AGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAP+KAR+RVGK VT
Sbjct: 241 AKRVKAGLQKAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARERVGKAVT 300
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
LQGNLDPCALYASEEEIG+LVQQML DFG + G PDMD
Sbjct: 301 LQGNLDPCALYASEEEIGRLVQQMLDDFGPQRYIANLGHGLYPDMD 346
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,048,797
Number of extensions: 1334872
Number of successful extensions: 4771
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4748
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001322
(1096 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128097.1| PREDICTED: uroporphyrinogen decarboxylase-li... 597 e-171
>ref|XP_003128097.1| PREDICTED: uroporphyrinogen decarboxylase-like [Sus scrofa].
Length = 367
Score = 597 bits (1539), Expect = e-171
Identities = 303/346 (87%), Positives = 304/346 (87%), Gaps = 1/346 (0%)
Frame = +2
Query: 62 MEANESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 241
MEA ESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
Sbjct: 1 MEATESGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60
Query: 242 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFXXXXXXXXXXXX 421
SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSF
Sbjct: 61 SPEVCCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREERDLER 120
Query: 422 XXXXATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 601
ATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW
Sbjct: 121 LRDPATVASELDYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSNTMAQAKRW 180
Query: 602 LYQRPQASHQLLRILTDALVPYXXXXXXXXXXXXXXFESHAGHLGPQLFNKFALPYIRDV 781
LYQRPQASHQLLRILTDALVPY FESHAGHLGPQLFNKFALPYIRDV
Sbjct: 181 LYQRPQASHQLLRILTDALVPYLVGQVAAGAQALQLFESHAGHLGPQLFNKFALPYIRDV 240
Query: 782 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 961
AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT
Sbjct: 241 AKRVKAGLQEAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPEKARDRVGKTVT 300
Query: 962 LQGNLDPCALYASEEEIGQLVQQMLSDFGHSATLPT-GARTLPDMD 1096
LQGNLDPCALYASEEEIGQLVQQMLSDFG + G PDMD
Sbjct: 301 LQGNLDPCALYASEEEIGQLVQQMLSDFGPQRYIANLGHGLYPDMD 346
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,421,416
Number of extensions: 1037752
Number of successful extensions: 4117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4103
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001322
(1096 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 400 e-109
>Sscrofa_Chr06
|| Length = 157765593
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Minus
Query: 334 ccaggcactgggcatggaggtgactatggtgcctggcaaagggcccagcttcccagagcc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913614 ccaggcactgggcatggaggtgactatggtgcctggcaaagggcccagcttcccagagcc 153913555
Query: 394 attacgagaagagcgagacttagagcgcctccgggacccagcaacagtggcctctgagct 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913554 attacgagaagagcgagacttagagcgcctccgggacccagcaacagtggcctctgagct 153913495
Query: 454 ggactatgtgttccaggccatcaccctcactcggcaacgactggctgggcgagtgccact 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913494 ggactatgtgttccaggccatcaccctcactcggcaacgactggctgggcgagtgccact 153913435
Query: 514 gattggctttgctggtgccccg 535
||||||||||||||||||||||
Sbjct: 153913434 gattggctttgctggtgccccg 153913413
Score = 317 bits (160), Expect = 7e-84
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 535 gtggactctgatgacatacatggttgagggtggcggctcaaacaccatggctcaggccaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913287 gtggactctgatgacatacatggttgagggtggcggctcaaacaccatggctcaggccaa 153913228
Query: 595 gcgctggctttaccagaggccgcaggccagtcaccagctgcttcgcatcctcactgatgc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913227 gcgctggctttaccagaggccgcaggccagtcaccagctgcttcgcatcctcactgatgc 153913168
Query: 655 tcttgtcccgtacctggtgggacaggtggctgctggtgcccagg 698
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 153913167 tcttgtcccatacctggtgggacaggtggctgctggtgcccagg 153913124
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 695 caggcattgcagctctttgagtcccatgcagggcatcttggcccacagctcttcaataaa 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912797 caggcattgcagctctttgagtcccatgcagggcatcttggcccacagctcttcaataaa 153912738
Query: 755 tttgcactgccctacatccgtgatgtggccaagcgagtgaaggccgggctgcaggaggca 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912737 tttgcactgccctacatccgtgatgtggccaagcgagtgaaggccgggctgcaggaggca 153912678
Query: 815 ggcctggcaccagtgcccatg 835
|||||||||||||||||||||
Sbjct: 153912677 ggcctggcaccagtgcccatg 153912657
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 81 gtccccagggttttccggagctgaagaatgacaccttcctgcgagcagcctggggagaag 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153914281 gtccccagggttttccggagctgaagaatgacaccttcctgcgagcagcctggggagaag 153914222
Query: 141 aaacagactacactccggtttggtgcatgcggcaggcaggccgctacttaccag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153914221 aaacagactacactccggtttggtgcatgcggcaggcaggccgctacttaccag 153914168
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 835 gatcatctttgctaaggatggacattttgccctggaggaactggcccaggctggctacga 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912491 gatcatctttgctaaggatggacattttgccctggaggaactggcccaggctggctacga 153912432
Query: 895 ggtggttgggcttgactggacagtggctccagagaaagcccgg 937
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912431 ggtggttgggcttgactggacagtggctccagagaaagcccgg 153912389
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 192 cagagtttagggaaaccagggctgcccaggactttttcagcacctgtcgatctccagagg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153914047 cagagtttagggaaaccagggctgcccaggactttttcagcacctgtcgatctccagagg 153913988
Query: 252 tgtgctgtgaactgacgctgcag 274
|||||||||||||||||||||||
Sbjct: 153913987 tgtgctgtgaactgacgctgcag 153913965
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 1 gggggcgggcgcagactcaggttttagtggggacccggctcgcgtttacagacagctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153915013 gggggcgggcgcagactcaggttttagtggggacccggctcgcgtttacagacagctgat 153914954
Query: 61 catggaggcgaacgagtctgg 81
|||||||||||||||||||||
Sbjct: 153914953 catggaggcgaacgagtctgg 153914933
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 936 gggaccgtgtggggaagacagtgaccctgcagggcaacctggacccctgtgccctgtatg 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153912302 gggaccgtgtggggaagacagtgaccctgcagggcaacctggacccctgtgccctgtatg 153912243
Query: 996 catctgagg 1004
|||||||||
Sbjct: 153912242 catctgagg 153912234
Score = 131 bits (66), Expect = 9e-28
Identities = 93/98 (94%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 1002 aggaggaaattggacagctggtgcagcagatgctcagtgactttggg-cacagcgctaca 1060
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 153911887 aggaggagattggacagctggtgcagcagatgctcagtgactttgggccacagcgctaca 153911828
Query: 1061 ttgccaa-ctggggcacggacttta-cctgacatggac 1096
||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 153911827 ttgccaacctgggccacggactttaccctgacatggac 153911790
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 273 agccactgcgtcgcttccccctggatgctgccatcatcttctccgacatcctcgttgtac 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153913889 agccactgcgtcgcttccccctggatgctgccatcatcttctccgacatcctcgttgtac 153913830
Query: 333 cccagg 338
||||||
Sbjct: 153913829 cccagg 153913824
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,748,499
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 10
Length of query: 1096
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1075
Effective length of database: 2,808,413,156
Effective search space: 3019044142700
Effective search space used: 3019044142700
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)