Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001365
(1679 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776433.1| monocyte differentiation antigen CD14 precursor... 554 e-158
Alignment gi|NP_776622.1| toll-like receptor 2 precursor [Bos taurus]. 50 6e-06
>ref|NP_776433.1| monocyte differentiation antigen CD14 precursor [Bos taurus].
Length = 373
Score = 554 bits (1428), Expect = e-158
Identities = 277/358 (77%), Positives = 303/358 (84%)
Frame = +2
Query: 383 RVSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIRGGGRSLEEFLLKSAS 562
RVSA T EPC++DD+D RCVCNFT P+PDWSSA+QC+ AVEVEI GGRSLE+FL K A
Sbjct: 17 RVSADTTEPCELDDDDFRCVCNFTDPKPDWSSAVQCMVAVEVEISAGGRSLEQFL-KGAD 75
Query: 563 ANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKELTLEDLEVTGQVPPPL 742
NPKQYAD +KALR+RRL +GAA+VPAQ+L VL ALG+SRLKELTLEDLEVTG PP
Sbjct: 76 TNPKQYADTIKALRVRRLKLGAAQVPAQLLVAVLRALGYSRLKELTLEDLEVTGPTPPTP 135
Query: 743 QETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQASSLAFPCAQLRAFPAL 922
E GPALTTL LRNVSW TGGAWLGELQQWL+P L+VL +AQA SLAFPCA L F AL
Sbjct: 136 LEAAGPALTTLSLRNVSWTTGGAWLGELQQWLKPGLRVLNIAQAHSLAFPCAGLSTFEAL 195
Query: 923 TTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDL 1102
TTLDLSDNP LG+ GL AALCP KFPAL+ LALRNAGMETPSGVCAALA A VQP LDL
Sbjct: 196 TTLDLSDNPSLGDTGLMAALCPNKFPALQYLALRNAGMETPSGVCAALAAARVQPQSLDL 255
Query: 1103 SHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVLDLSCNKLNRAPRPEE 1282
SHNSLR TA GA CVWP+AL SLNLSFA LEQVPKGLPPKL+VLDLSCNKL+R PR +E
Sbjct: 256 SHNSLRVTAPGATRCVWPSALRSLNLSFAGLEQVPKGLPPKLSVLDLSCNKLSREPRRDE 315
Query: 1283 LPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVSGTLALLQGARGFA 1456
LP V+DLTL+GNP++DP ALQHQ DPM SGVVP CARSALTMGVSG LALLQGARGFA
Sbjct: 316 LPEVNDLTLDGNPFLDPGALQHQNDPMISGVVPACARSALTMGVSGALALLQGARGFA 373
>ref|NP_776622.1| toll-like receptor 2 precursor [Bos taurus].
Length = 784
Score = 50.1 bits (118), Expect = 6e-06
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Frame = +2
Query: 851 KVLKVAQASSLAF--PCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDLALR 1024
+V +V +S F PC + +L LDLS+N + E L + C +P L+ L LR
Sbjct: 337 RVKRVTIENSKVFLVPCLLSQHLKSLEYLDLSENL-MSEETLKNSACKDAWPFLQTLVLR 395
Query: 1025 N---AGMETPSGVCAALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAEL 1195
+E + L + LD+S N+ + C WP + LNLS +
Sbjct: 396 QNRLKSLEKTGELLLTLENL----NNLDISKNNFLSMP---ETCQWPGKMKQLNLSSTRI 448
Query: 1196 EQVPKGLPPKLTVLDLSCNKLN 1261
+ + LP L +LD+S N L+
Sbjct: 449 HSLTQCLPQTLEILDVSNNNLD 470
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,392,080
Number of extensions: 2078145
Number of successful extensions: 13193
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13067
Number of HSP's successfully gapped: 2
Length of query: 559
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 452
Effective length of database: 14,140,958
Effective search space: 6391713016
Effective search space used: 6391713016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001365
(1679 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848746.1| PREDICTED: similar to Monocyte differentiation ... 399 e-111
Alignment gi|NP_001005264.2| toll-like receptor 2 precursor [Canis lupus ... 52 2e-06
>ref|XP_848746.1| PREDICTED: similar to Monocyte differentiation antigen CD14 precursor
(Myeloid cell-specific leucine-rich glycoprotein) [Canis
familiaris].
Length = 346
Score = 399 bits (1025), Expect = e-111
Identities = 215/357 (60%), Positives = 253/357 (70%)
Frame = +2
Query: 386 VSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIRGGGRSLEEFLLKSASA 565
VS + EPC++DD+D RC CNFT PQPDWSSA QC+ AVEVEI GGGRSLE+FL K A A
Sbjct: 17 VSETSLEPCEVDDDDFRCFCNFTDPQPDWSSAFQCMIAVEVEIHGGGRSLEQFL-KGADA 75
Query: 566 NPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKELTLEDLEVTGQVPPPLQ 745
+PKQYADM++ALRLRRLTV +A+VPA ++ L ALG+SRLKELTL+DLEV G
Sbjct: 76 DPKQYADMVRALRLRRLTVASAQVPAVLVTAFLRALGYSRLKELTLQDLEVNGTA----- 130
Query: 746 ETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQASSLAFPCAQLRAFPALT 925
+ +G W + P +V V LA A A
Sbjct: 131 --------------AAAGSGSHWACAVHP--HPPERV--VGNGKCLARRTA---AVAEAG 169
Query: 926 TLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDLS 1105
DLSDNPGLGE GL +ALCP+KFPAL+ L LRNAGM TP+GVCAA+A AGVQP LDLS
Sbjct: 170 PQDLSDNPGLGEHGLASALCPQKFPALQALVLRNAGMHTPNGVCAAMAVAGVQPRHLDLS 229
Query: 1106 HNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVLDLSCNKLNRAPRPEEL 1285
HNSLRATA GA CVWP+AL SLNLSF+ L QVPKGLP +L+VLDL CNKLNR PR EEL
Sbjct: 230 HNSLRATAPGAPACVWPSALDSLNLSFSGLGQVPKGLPARLSVLDLRCNKLNREPRLEEL 289
Query: 1286 PAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVSGTLALLQGARGFA 1456
P V +LTL+GNP++DPEA ++QE+P SGVVP CARS L +G+SGTLA+LQ GFA
Sbjct: 290 PKVSNLTLDGNPFLDPEAPKYQENPTTSGVVPSCARSGLAVGMSGTLAVLQRVGGFA 346
>ref|NP_001005264.2| toll-like receptor 2 precursor [Canis lupus familiaris].
Length = 785
Score = 51.6 bits (122), Expect = 2e-06
Identities = 44/161 (27%), Positives = 72/161 (44%)
Frame = +2
Query: 836 LQPSLKVLKVAQASSLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDL 1015
L +K + V + PC+ + +L LDLSDN + E L + C +P L+ L
Sbjct: 335 LTEDVKRITVESSKVFLVPCSLSQHLKSLEYLDLSDNLVV-EEYLRNSACQHAWPLLQTL 393
Query: 1016 ALRNAGMETPSGVCAALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAEL 1195
LR +++ L + LD+S N+ + C WP L LNLS +
Sbjct: 394 ILRQNRLKSLEKTGETLLTLKNLVN-LDISKNNYLSMP---ETCQWPEKLKCLNLSDTRM 449
Query: 1196 EQVPKGLPPKLTVLDLSCNKLNRAPRPEELPAVDDLTLEGN 1318
+ + + +P L +LD+S N L LP + +L++ N
Sbjct: 450 QSITRCIPQTLEILDVSNNNLESFSL--ILPQLKELSISRN 488
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,391,867
Number of extensions: 2147792
Number of successful extensions: 13351
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13236
Number of HSP's successfully gapped: 4
Length of query: 559
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 451
Effective length of database: 15,274,216
Effective search space: 6888671416
Effective search space used: 6888671416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001365
(1679 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001167576.1| monocyte differentiation antigen CD14 precur... 510 e-144
Alignment gi|NP_001167575.1| monocyte differentiation antigen CD14 precur... 510 e-144
Alignment gi|NP_001035110.1| monocyte differentiation antigen CD14 precur... 510 e-144
Alignment gi|NP_000582.1| monocyte differentiation antigen CD14 precursor... 510 e-144
Alignment gi|NP_003255.2| toll-like receptor 2 precursor [Homo sapiens]. 53 7e-07
>ref|NP_001167576.1| monocyte differentiation antigen CD14 precursor [Homo sapiens].
Length = 375
Score = 510 bits (1314), Expect = e-144
Identities = 256/359 (71%), Positives = 295/359 (82%), Gaps = 2/359 (0%)
Frame = +2
Query: 386 VSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIRGGGRSLEEFLLK-SAS 562
VSA TPEPC++DDED RCVCNF+ PQPDWS A QCV+AVEVEI GG +LE FL + A
Sbjct: 17 VSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIHAGGLNLEPFLKRVDAD 76
Query: 563 ANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKELTLEDLEVTGQVPPPL 742
A+P+QYAD +KALR+RRLTVGAA+VPAQ+L L L +SRLKELTLEDL++TG +PP
Sbjct: 77 ADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLP 136
Query: 743 QETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQASSLAFPCAQLRAFPAL 922
E G AL++LRLRNVSWATG +WL ELQQWL+P LKVL +AQA S AF C Q+RAFPAL
Sbjct: 137 LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 196
Query: 923 TTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDL 1102
T+LDLSDNPGLGERGL AALCP KFPA+++LALRN GMETP+GVCAALA AGVQPH LDL
Sbjct: 197 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 256
Query: 1103 SHNSLRATA-AGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVLDLSCNKLNRAPRPE 1279
SHNSLRAT A C+W +AL+SLNLSFA LEQVPKGLP KL VLDLSCN+LNRAP+P+
Sbjct: 257 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSCNRLNRAPQPD 316
Query: 1280 ELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVSGTLALLQGARGFA 1456
ELP VD+LTL+GNP++ P E M SGVVP CARS L++GVSGTL LLQGARGFA
Sbjct: 317 ELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVPACARSTLSVGVSGTLVLLQGARGFA 375
>ref|NP_001167575.1| monocyte differentiation antigen CD14 precursor [Homo sapiens].
Length = 375
Score = 510 bits (1314), Expect = e-144
Identities = 256/359 (71%), Positives = 295/359 (82%), Gaps = 2/359 (0%)
Frame = +2
Query: 386 VSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIRGGGRSLEEFLLK-SAS 562
VSA TPEPC++DDED RCVCNF+ PQPDWS A QCV+AVEVEI GG +LE FL + A
Sbjct: 17 VSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIHAGGLNLEPFLKRVDAD 76
Query: 563 ANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKELTLEDLEVTGQVPPPL 742
A+P+QYAD +KALR+RRLTVGAA+VPAQ+L L L +SRLKELTLEDL++TG +PP
Sbjct: 77 ADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLP 136
Query: 743 QETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQASSLAFPCAQLRAFPAL 922
E G AL++LRLRNVSWATG +WL ELQQWL+P LKVL +AQA S AF C Q+RAFPAL
Sbjct: 137 LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 196
Query: 923 TTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDL 1102
T+LDLSDNPGLGERGL AALCP KFPA+++LALRN GMETP+GVCAALA AGVQPH LDL
Sbjct: 197 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 256
Query: 1103 SHNSLRATA-AGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVLDLSCNKLNRAPRPE 1279
SHNSLRAT A C+W +AL+SLNLSFA LEQVPKGLP KL VLDLSCN+LNRAP+P+
Sbjct: 257 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSCNRLNRAPQPD 316
Query: 1280 ELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVSGTLALLQGARGFA 1456
ELP VD+LTL+GNP++ P E M SGVVP CARS L++GVSGTL LLQGARGFA
Sbjct: 317 ELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVPACARSTLSVGVSGTLVLLQGARGFA 375
>ref|NP_001035110.1| monocyte differentiation antigen CD14 precursor [Homo sapiens].
Length = 375
Score = 510 bits (1314), Expect = e-144
Identities = 256/359 (71%), Positives = 295/359 (82%), Gaps = 2/359 (0%)
Frame = +2
Query: 386 VSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIRGGGRSLEEFLLK-SAS 562
VSA TPEPC++DDED RCVCNF+ PQPDWS A QCV+AVEVEI GG +LE FL + A
Sbjct: 17 VSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIHAGGLNLEPFLKRVDAD 76
Query: 563 ANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKELTLEDLEVTGQVPPPL 742
A+P+QYAD +KALR+RRLTVGAA+VPAQ+L L L +SRLKELTLEDL++TG +PP
Sbjct: 77 ADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLP 136
Query: 743 QETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQASSLAFPCAQLRAFPAL 922
E G AL++LRLRNVSWATG +WL ELQQWL+P LKVL +AQA S AF C Q+RAFPAL
Sbjct: 137 LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 196
Query: 923 TTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDL 1102
T+LDLSDNPGLGERGL AALCP KFPA+++LALRN GMETP+GVCAALA AGVQPH LDL
Sbjct: 197 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 256
Query: 1103 SHNSLRATA-AGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVLDLSCNKLNRAPRPE 1279
SHNSLRAT A C+W +AL+SLNLSFA LEQVPKGLP KL VLDLSCN+LNRAP+P+
Sbjct: 257 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSCNRLNRAPQPD 316
Query: 1280 ELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVSGTLALLQGARGFA 1456
ELP VD+LTL+GNP++ P E M SGVVP CARS L++GVSGTL LLQGARGFA
Sbjct: 317 ELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVPACARSTLSVGVSGTLVLLQGARGFA 375
>ref|NP_000582.1| monocyte differentiation antigen CD14 precursor [Homo sapiens].
Length = 375
Score = 510 bits (1314), Expect = e-144
Identities = 256/359 (71%), Positives = 295/359 (82%), Gaps = 2/359 (0%)
Frame = +2
Query: 386 VSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIRGGGRSLEEFLLK-SAS 562
VSA TPEPC++DDED RCVCNF+ PQPDWS A QCV+AVEVEI GG +LE FL + A
Sbjct: 17 VSATTPEPCELDDEDFRCVCNFSEPQPDWSEAFQCVSAVEVEIHAGGLNLEPFLKRVDAD 76
Query: 563 ANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKELTLEDLEVTGQVPPPL 742
A+P+QYAD +KALR+RRLTVGAA+VPAQ+L L L +SRLKELTLEDL++TG +PP
Sbjct: 77 ADPRQYADTVKALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLP 136
Query: 743 QETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQASSLAFPCAQLRAFPAL 922
E G AL++LRLRNVSWATG +WL ELQQWL+P LKVL +AQA S AF C Q+RAFPAL
Sbjct: 137 LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 196
Query: 923 TTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDL 1102
T+LDLSDNPGLGERGL AALCP KFPA+++LALRN GMETP+GVCAALA AGVQPH LDL
Sbjct: 197 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 256
Query: 1103 SHNSLRATA-AGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVLDLSCNKLNRAPRPE 1279
SHNSLRAT A C+W +AL+SLNLSFA LEQVPKGLP KL VLDLSCN+LNRAP+P+
Sbjct: 257 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSCNRLNRAPQPD 316
Query: 1280 ELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVSGTLALLQGARGFA 1456
ELP VD+LTL+GNP++ P E M SGVVP CARS L++GVSGTL LLQGARGFA
Sbjct: 317 ELPEVDNLTLDGNPFLVPGTALPHEGSMNSGVVPACARSTLSVGVSGTLVLLQGARGFA 375
>ref|NP_003255.2| toll-like receptor 2 precursor [Homo sapiens].
Length = 784
Score = 53.1 bits (126), Expect = 7e-07
Identities = 47/167 (28%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Frame = +2
Query: 836 LQPSLKVLKVAQASSLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDL 1015
L +K + V + PC + +L LDLS+N + E L + C +P+L+ L
Sbjct: 334 LTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENL-MVEEYLKNSACEDAWPSLQTL 392
Query: 1016 ALRN---AGMETPSGVCAALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSF 1186
LR A +E L +D+S NS + C WP + LNLS
Sbjct: 393 ILRQNHLASLEKTGETLLTLKNLT----NIDISKNSFHSMP---ETCQWPEKMKYLNLSS 445
Query: 1187 AELEQVPKGLPPKLTVLDLSCNKLNRAPRPEELPAVDDLTLEGNPYM 1327
+ V +P L +LD+S N LN LP + +L + N M
Sbjct: 446 TRIHSVTGCIPKTLEILDVSNNNLNLFSL--NLPQLKELYISRNKLM 490
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,491,287
Number of extensions: 2061866
Number of successful extensions: 12126
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 12000
Number of HSP's successfully gapped: 5
Length of query: 559
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 451
Effective length of database: 14,737,052
Effective search space: 6646410452
Effective search space used: 6646410452
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001365
(1679 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033971.1| monocyte differentiation antigen CD14 precursor... 412 e-115
Alignment gi|NP_001157792.1| chondroadherin-like [Mus musculus]. 50 4e-06
>ref|NP_033971.1| monocyte differentiation antigen CD14 precursor [Mus musculus].
Length = 366
Score = 412 bits (1060), Expect = e-115
Identities = 221/357 (61%), Positives = 265/357 (74%), Gaps = 2/357 (0%)
Frame = +2
Query: 389 SAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIRGGGRSLEEFLLK--SAS 562
S A PEPC++D+E C CNF+ P+PDWSSA C+ A +VE+ GGGRSLE +LLK
Sbjct: 16 SPAPPEPCELDEES--CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLE-YLLKRVDTE 72
Query: 563 ANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKELTLEDLEVTGQVPPPL 742
A+ Q+ D++K+L L+RLTV AAR+P++IL L LG S L+ELTLE+LEVTG PPPL
Sbjct: 73 ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 132
Query: 743 QETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQASSLAFPCAQLRAFPAL 922
E GP L L LRNVSWAT AWL ELQQWL+P LKVL +AQA SL F C Q+R FPAL
Sbjct: 133 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 192
Query: 923 TTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDL 1102
+TLDLSDNP LGERGL +ALCP KFP L+ LALRNAGMETPSGVC+ALA A VQ LDL
Sbjct: 193 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 252
Query: 1103 SHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVLDLSCNKLNRAPRPEE 1282
SHNSLR AAGA C WP+ L+SLNLSF L+QVPKGLP KL+VLDLS N+L+R P P+E
Sbjct: 253 SHNSLR-DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDE 311
Query: 1283 LPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVSGTLALLQGARGF 1453
LP V +L+L+GNP++D E+ + SGVV A S+ + +SGTLALL G R F
Sbjct: 312 LPQVGNLSLKGNPFLDSES---HSEKFNSGVVTAGAPSSQAVALSGTLALLLGDRLF 365
>ref|NP_001157792.1| chondroadherin-like [Mus musculus].
Length = 748
Score = 50.4 bits (119), Expect = 4e-06
Identities = 62/188 (32%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Frame = +2
Query: 842 PSLKVLKVAQASSLAFPCAQLRAFPALTTLDLSDN------PG--LGERGL--------- 970
P+L L + L P LRA P L +L L DN PG G R L
Sbjct: 496 PNLGYLYLEHNRFLRIPGTALRALPTLVSLHLQDNAVDRLAPGDLAGARALRCLYLSGNH 555
Query: 971 -----TAALCPRKFPALEDLAL-RNAGMETPSGVCAALAGAGVQPHRLDLSHNSLRATAA 1132
AL P + LE L L RN E P+G L L LS N LRA
Sbjct: 556 ITQVSPGALGPAR--ELEKLHLDRNRLREVPTGALEGLPAL----KELQLSGNPLRALPD 609
Query: 1133 GARECVWPAALSSLNLSFAELEQVP----KGLPPKLTVLDLSCNKLNRAPRPEELPAVDD 1300
GA + V +L L L+ ++LEQ+ GL L L L N+L P P L ++
Sbjct: 610 GAFQPV-GRSLQQLFLNSSDLEQISPRAFSGLGKGLRSLYLHKNQLQSLPAPLGLSGLEL 668
Query: 1301 LTLEGNPY 1324
+ L GNP+
Sbjct: 669 VDLSGNPF 676
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,268,690
Number of extensions: 1675513
Number of successful extensions: 9043
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8955
Number of HSP's successfully gapped: 2
Length of query: 559
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 452
Effective length of database: 12,403,707
Effective search space: 5606475564
Effective search space used: 5606475564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001365
(1679 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354359.1| PREDICTED: monocyte differentiation antigen ... 716 0.0
Alignment gi|NP_001090914.2| monocyte differentiation antigen CD14 [Sus s... 713 0.0
Alignment gi|NP_998926.1| toll-like receptor 2 [Sus scrofa]. 53 6e-07
Alignment gi|NP_001025705.1| toll-like receptor 10 [Sus scrofa]. 50 4e-06
>ref|XP_003354359.1| PREDICTED: monocyte differentiation antigen CD14-like [Sus scrofa].
Length = 373
Score = 716 bits (1848), Expect = 0.0
Identities = 361/373 (96%), Positives = 361/373 (96%)
Frame = +2
Query: 338 MVRXXXXXXXXXXXXRVSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIR 517
MVR RVSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIR
Sbjct: 1 MVRLPCPLLLLLPLLRVSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIR 60
Query: 518 GGGRSLEEFLLKSASANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKEL 697
GGGRSLEEFLLKSASANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKEL
Sbjct: 61 GGGRSLEEFLLKSASANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKEL 120
Query: 698 TLEDLEVTGQVPPPLQETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQAS 877
TLEDLEVTGQVPPPLQETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQAS
Sbjct: 121 TLEDLEVTGQVPPPLQETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQAS 180
Query: 878 SLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVC 1057
SLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVC
Sbjct: 181 SLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVC 240
Query: 1058 AALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVL 1237
AALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVL
Sbjct: 241 AALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVL 300
Query: 1238 DLSCNKLNRAPRPEELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVS 1417
DLSCNKLNRAPRPEELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVS
Sbjct: 301 DLSCNKLNRAPRPEELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVS 360
Query: 1418 GTLALLQGARGFA 1456
GTLALLQGARGFA
Sbjct: 361 GTLALLQGARGFA 373
>ref|NP_001090914.2| monocyte differentiation antigen CD14 [Sus scrofa].
Length = 373
Score = 713 bits (1841), Expect = 0.0
Identities = 359/373 (96%), Positives = 361/373 (96%)
Frame = +2
Query: 338 MVRXXXXXXXXXXXXRVSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIR 517
MVR RVSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIR
Sbjct: 1 MVRLPCPLLLLLPLLRVSAATPEPCQIDDEDVRCVCNFTHPQPDWSSALQCVAAVEVEIR 60
Query: 518 GGGRSLEEFLLKSASANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKEL 697
GGGRSL+EFLLKSASANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKEL
Sbjct: 61 GGGRSLDEFLLKSASANPKQYADMLKALRLRRLTVGAARVPAQILALVLHALGFSRLKEL 120
Query: 698 TLEDLEVTGQVPPPLQETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQAS 877
TLEDLEVTGQVPPPLQETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQAS
Sbjct: 121 TLEDLEVTGQVPPPLQETPGPALTTLRLRNVSWATGGAWLGELQQWLQPSLKVLKVAQAS 180
Query: 878 SLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGMETPSGVC 1057
SLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAG+ETPSGVC
Sbjct: 181 SLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDLALRNAGVETPSGVC 240
Query: 1058 AALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVL 1237
AALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVL
Sbjct: 241 AALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSFAELEQVPKGLPPKLTVL 300
Query: 1238 DLSCNKLNRAPRPEELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVS 1417
DLSCNKLNRAPRPEELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVS
Sbjct: 301 DLSCNKLNRAPRPEELPAVDDLTLEGNPYMDPEALQHQEDPMASGVVPPCARSALTMGVS 360
Query: 1418 GTLALLQGARGFA 1456
GTLALLQGARGFA
Sbjct: 361 GTLALLQGARGFA 373
>ref|NP_998926.1| toll-like receptor 2 [Sus scrofa].
Length = 785
Score = 52.8 bits (125), Expect = 6e-07
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 3/164 (1%)
Frame = +2
Query: 836 LQPSLKVLKVAQASSLAFPCAQLRAFPALTTLDLSDNPGLGERGLTAALCPRKFPALEDL 1015
L ++K + + + PC+ + +L LDLS+N + E L + C +P L L
Sbjct: 335 LTGAVKRITIENSKVFLVPCSLSQHLKSLEYLDLSENL-MSEEYLKNSACEHAWPFLHTL 393
Query: 1016 ALRN---AGMETPSGVCAALAGAGVQPHRLDLSHNSLRATAAGARECVWPAALSSLNLSF 1186
LR +E V L LD+S N+ + C WP + LNLS
Sbjct: 394 ILRQNHLKSLEKTGEVLVTLKNLT----NLDISKNNFDSMP---ETCQWPEKMKYLNLSS 446
Query: 1187 AELEQVPKGLPPKLTVLDLSCNKLNRAPRPEELPAVDDLTLEGN 1318
+ + LP L VLD+S N LN LP + +L + N
Sbjct: 447 TRIHSLTHCLPQTLEVLDISNNNLNSFSL--SLPQLKELYISRN 488
>ref|NP_001025705.1| toll-like receptor 10 [Sus scrofa].
Length = 811
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Frame = +2
Query: 986 PRKFPALEDLALRNAGMETPSGVCAALAGAGVQPHRLDLSHNSLRATAAGARECVWPAAL 1165
P + P L+ L L++ +ET S V + ++ LDLS N L+ +C+WP L
Sbjct: 368 PVQLPHLKTLILKDNKLETLSLVSCFVRNTSLE--HLDLSQNLLQYE--NDEKCLWPETL 423
Query: 1166 SSLNLSFAEL-EQVPKGLPPKLTVLDLSCNKLNRAPRP-EELPAVDDLTLEGNPYMDPEA 1339
++NLSF +L + V + LP + +LDL+ N ++ P+ L ++ +L L N D
Sbjct: 424 ITMNLSFNKLADSVFRCLPRNIQMLDLNNNNIHTVPKEIIHLTSLQELNLAFNFLTDLPG 483
Query: 1340 LQH 1348
H
Sbjct: 484 CSH 486
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,674,004
Number of extensions: 1352029
Number of successful extensions: 8538
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8466
Number of HSP's successfully gapped: 4
Length of query: 559
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 455
Effective length of database: 8,754,644
Effective search space: 3983363020
Effective search space used: 3983363020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001365
(1679 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 2484 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 2484 bits (1253), Expect = 0.0
Identities = 1258/1260 (99%)
Strand = Plus / Minus
Query: 384 gtgtgtctgcggccaccccggagccctgccaaatagacgacgaagacgtccgctgcgtct 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293158 gtgtgtctgcggccaccccggagccctgccaaatagacgacgaagacgtccgctgcgtct 148293099
Query: 444 gcaacttcacgcatccgcagccggactggtccagcgccctgcagtgcgtggctgccgtcg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293098 gcaacttcacgcatccgcagccggactggtccagcgccctgcagtgcgtggctgccgtcg 148293039
Query: 504 aggtggagatccgcggcggcggccggagcctggaagagttccttttaaagagcgccagcg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293038 aggtggagatccgcggcggcggccggagcctggaagagttccttttaaagagcgccagcg 148292979
Query: 564 ccaacccgaagcagtacgcggacatgctcaaggcgctgcgcttgcggcgactcacggtgg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292978 ccaacccgaagcagtacgcggacatgctcaaggcgctgcgcttgcggcgactcacggtgg 148292919
Query: 624 gcgctgcgcgggttcctgctcagattctggccctggtcctgcatgcgctcgggttctccc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292918 gcgctgcgcgggttcctgctcagattctggccctggtcctgcatgcgctcgggttctccc 148292859
Query: 684 gcctcaaggaactgacgctcgaggacctggaggtaaccggccaggtaccgccgccgcttc 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292858 gcctcaaggaactgacgctcgaggacctggaggtaaccggccaggtaccgccgccgcttc 148292799
Query: 744 aggaaacgccgggacctgcgctcaccaccctcagactccgtaatgtgtcgtgggccaccg 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292798 aggaaacgccgggacctgcgctcaccaccctcagactccgtaatgtgtcgtgggccaccg 148292739
Query: 804 gaggtgcctggctcggcgaactgcagcagtggctccagccaagcctcaaggtactgaaag 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292738 gaggtgcctggctcggcgaactgcagcagtggctccagccaagcctcaaggtactgaaag 148292679
Query: 864 tggcgcaagcaagctcgcttgcctttccgtgcgcccagcttcgcgccttcccggctctca 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292678 tggcgcaagcaagctcgcttgcctttccgtgcgcccagcttcgcgccttcccggctctca 148292619
Query: 924 ccaccctggacctatctgacaatcccgggctgggcgagcgcgggctgactgcagctctct 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292618 ccaccctggacctatctgacaatcccgggctgggcgagcgcgggctgactgcagctctct 148292559
Query: 984 gtccgcgcaagttcccggccctcgaggatctggcgctgcgcaacgcggggatggagacac 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292558 gtccgcgcaagttcccggccctcgaggatctggcgctgcgcaacgcggggatggagacac 148292499
Query: 1044 ccagcggcgtgtgcgcggcgctggcgggggcgggcgtgcaaccccaccgcctggacctca 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292498 ccagcggcgtgtgcgcggcgctggcgggggcgggcgtgcaaccccaccgcctggacctca 148292439
Query: 1104 gtcacaactcgctgcgcgccaccgccgcgggcgcccgggagtgtgtctggcctgccgccc 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292438 gtcacaactcgctgcgcgccaccgccgcgggcgcccgggagtgtgtctggcctgccgccc 148292379
Query: 1164 tgagctctctcaatttgtcattcgctgagctggagcaagtgcctaaaggactgccgccca 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292378 tgagctctctcaatttgtcattcgctgagctggagcaagtgcctaaaggactgccgccca 148292319
Query: 1224 agctcaccgtgcttgatctcagctgcaacaagctgaacagagcgccgcggccagaggagc 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292318 agctcaccgtgcttgatctcagctgcaacaagctgaacagagcgccgcggccagaggagc 148292259
Query: 1284 tgcccgccgtggatgacctgaccctggaagggaatccctatatggatcctgaagccctcc 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292258 tgcccgccgtggatgacctgaccctggaagggaatccctatatggatcctgaagccctcc 148292199
Query: 1344 agcaccaggaagacccgatggcctctggcgtggtcccaccctgtgcgcgttccgccttga 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292198 agcaccaggaagacccgatggcctctggcgtggtcccaccctgtgcgcgttccgccttga 148292139
Query: 1404 ccatgggggtgtcgggaaccctggcgctgcttcagggagcccggggcttcgcctaaggcc 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292138 ccatgggggtgtcgggaaccctggcgctgcttcagggagcccggggcttcgcctaaggcc 148292079
Query: 1464 caaggaaggggaattactggctcagactgccgtggctccgggggagcctcctcaggacaa 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292078 caaggaaggggaattactggctcagactgccgtggctccgggggagcctcctcaggacaa 148292019
Query: 1524 ctcaaccaaccacccctctgccccaccttcattaaaatcttgaacaacagctcgtggtgt 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148292018 ctcaaccaaccacccctctgccccaccttcattaaaatcttgaacaacagctcgtggtgt 148291959
Query: 1584 cattcactncatagatgttactgggccttgctggatggggatccattctatttaagcttt 1643
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148291958 cattcactcaatagatgttactgggccttgctggatggggatccattctatttaagcttt 148291899
Score = 676 bits (341), Expect = 0.0
Identities = 341/341 (100%)
Strand = Plus / Minus
Query: 1 cactgcctagtgccaaggattctagaggccttgcaagatccttccggttagggccccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293621 cactgcctagtgccaaggattctagaggccttgcaagatccttccggttagggccccact 148293562
Query: 61 cctgctgcgtcaggcaggcaacatccctcattgcaaaatttcgcagaagtgtagcgaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293561 cctgctgcgtcaggcaggcaacatccctcattgcaaaatttcgcagaagtgtagcgaacg 148293502
Query: 121 tgggtggttgggaggaagagaggtgggaggtggcagagttcaaagagtagggaacagagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293501 tgggtggttgggaggaagagaggtgggaggtggcagagttcaaagagtagggaacagagt 148293442
Query: 181 gacaccccccggattacacaaacccccaaagtctgccaaagagtgaggacagatagcgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293441 gacaccccccggattacacaaacccccaaagtctgccaaagagtgaggacagatagcgtt 148293382
Query: 241 tgtggagcctggaagccagggagtgccgcggttaaaggagccacagccctttcgagagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293381 tgtggagcctggaagccagggagtgccgcggttaaaggagccacagccctttcgagagcc 148293322
Query: 301 ggcgggagacgcagaggctttgaggaccttatcgaccatgg 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 148293321 ggcgggagacgcagaggctttgaggaccttatcgaccatgg 148293281
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,873,098
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 1679
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1657
Effective length of database: 2,808,408,574
Effective search space: 4653533007118
Effective search space used: 4653533007118
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)