Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001549
(1237 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like... 229 4e-60
Alignment gi|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like... 229 4e-60
Alignment gi|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like... 229 4e-60
Alignment gi|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like is... 229 4e-60
Alignment gi|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus]. 226 2e-59
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 122 5e-28
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 122 5e-28
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 122 5e-28
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 122 5e-28
Alignment gi|NP_001073729.1| GTPase, IMAP family member 5-like [Bos tauru... 115 6e-26
>ref|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 310
Score = 229 bits (584), Expect = 4e-60
Identities = 114/161 (70%), Positives = 130/161 (80%)
Frame = +3
Query: 330 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 509
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 102 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 161
Query: 510 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVE 689
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV ELM LVE
Sbjct: 162 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 221
Query: 690 DLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 812
+LVRD GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 222 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 262
>ref|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 298
Score = 229 bits (584), Expect = 4e-60
Identities = 114/161 (70%), Positives = 130/161 (80%)
Frame = +3
Query: 330 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 509
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 90 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 149
Query: 510 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVE 689
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV ELM LVE
Sbjct: 150 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 209
Query: 690 DLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 812
+LVRD GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 210 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 250
>ref|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 310
Score = 229 bits (584), Expect = 4e-60
Identities = 114/161 (70%), Positives = 130/161 (80%)
Frame = +3
Query: 330 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 509
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 102 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 161
Query: 510 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVE 689
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV ELM LVE
Sbjct: 162 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 221
Query: 690 DLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 812
+LVRD GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 222 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 262
>ref|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 298
Score = 229 bits (584), Expect = 4e-60
Identities = 114/161 (70%), Positives = 130/161 (80%)
Frame = +3
Query: 330 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 509
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 90 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 149
Query: 510 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVE 689
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV ELM LVE
Sbjct: 150 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 209
Query: 690 DLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 812
+LVRD GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 210 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 250
>ref|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus].
Length = 294
Score = 226 bits (577), Expect = 2e-59
Identities = 113/161 (70%), Positives = 129/161 (80%)
Frame = +3
Query: 330 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 509
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++A +V
Sbjct: 90 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAARAVV 149
Query: 510 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVE 689
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV ELM LVE
Sbjct: 150 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVRELMGLVE 209
Query: 690 DLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 812
+LVRD GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 210 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 250
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 122 bits (307), Expect = 5e-28
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Frame = +3
Query: 321 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 497
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 99 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 158
Query: 498 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELM 677
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM
Sbjct: 159 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 218
Query: 678 RLVEDLVRDRGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 821
++E L ++ G TN+++ AQ L G L KV +VA+++QG
Sbjct: 219 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 273
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 307
Score = 122 bits (307), Expect = 5e-28
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Frame = +3
Query: 321 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 497
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 85 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 144
Query: 498 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELM 677
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM
Sbjct: 145 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 204
Query: 678 RLVEDLVRDRGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 821
++E L ++ G TN+++ AQ L G L KV +VA+++QG
Sbjct: 205 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 259
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 122 bits (307), Expect = 5e-28
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Frame = +3
Query: 321 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 497
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 99 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 158
Query: 498 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELM 677
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM
Sbjct: 159 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 218
Query: 678 RLVEDLVRDRGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 821
++E L ++ G TN+++ AQ L G L KV +VA+++QG
Sbjct: 219 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 273
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 122 bits (307), Expect = 5e-28
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 8/175 (4%)
Frame = +3
Query: 321 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 497
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 85 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 144
Query: 498 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELM 677
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM
Sbjct: 145 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 204
Query: 678 RLVEDLVRDRGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 821
++E L ++ G TN+++ AQ L G L KV +VA+++QG
Sbjct: 205 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 259
>ref|NP_001073729.1| GTPase, IMAP family member 5-like [Bos taurus].
Length = 297
Score = 115 bits (289), Expect = 6e-26
Identities = 71/174 (40%), Positives = 97/174 (55%), Gaps = 8/174 (4%)
Frame = +3
Query: 321 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 497
P E D + E G CY VTQLG FT QD A VK +FG G
Sbjct: 74 PIFESRAQDQEVYENIGACYLLSVPGPHVLLLVTQLGHFTKQDVVAMTRVKEVFGAGAER 133
Query: 498 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELM 677
+ +++FT KEDLA GSL +Y+ +++N LR LV +C R CAFNN A+G EQ Q+ +LM
Sbjct: 134 YMVILFTHKEDLAGGSLDEYMANTDNLRLRSLVQKCRRRYCAFNNWASGDEQRGQLAQLM 193
Query: 678 RLVEDLVRDRGGAPYTNDVYHLAQAL----GGVSPEERLR---KVAERVAQKQQ 818
++E L R+ GA TN+++ AQ L GG E + R KV +VA+++Q
Sbjct: 194 AVIEGLEREHQGAFLTNELFFDAQMLQQMGGGAHGEGQRRYLDKVRLQVAKQKQ 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,440,997
Number of extensions: 952349
Number of successful extensions: 4583
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4563
Number of HSP's successfully gapped: 24
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001549
(1237 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 177 2e-44
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 140 3e-33
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 137 2e-32
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 114 3e-25
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 98 1e-20
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 89 7e-18
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 78 2e-14
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 177 bits (449), Expect = 2e-44
Identities = 92/160 (57%), Positives = 109/160 (68%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
+E R D C ERGRCY VTQLGRFTAQD+QA RGV+ LFG GV A +
Sbjct: 151 AEGRRADRGCAERGRCYLLSAPGPHALLLVTQLGRFTAQDEQAVRGVRELFGPGVLARAV 210
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
VVFTR+EDLA S DYVR ++N+ALR LVAECGGRVCA +NRA G E+EAQ EL+ L
Sbjct: 211 VVFTRREDLAGASPHDYVRATDNRALRALVAECGGRVCALDNRAEGAEREAQAGELLALA 270
Query: 687 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVA 806
L R+ AP+TNDVY LA L G +P+ LR+V ER+A
Sbjct: 271 ARLAREHADAPFTNDVYRLAAELRGAAPDGGLRRVCERLA 310
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 140 bits (352), Expect = 3e-33
Identities = 77/151 (50%), Positives = 94/151 (62%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
SE +D KE RCY VTQLGRFT QDQQ + +K +FG+ V HTI
Sbjct: 83 SERDHSDSLYKEVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEIFGEDVMRHTI 142
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
V+FT KEDL SL DY+ D +N+AL +LVA CGGRVCAF+N ATG +++ QV ELM L+
Sbjct: 143 VLFTHKEDLKGESLTDYILDIDNKALCKLVAACGGRVCAFDNHATGSDRDDQVKELMALM 202
Query: 687 EDLVRDRGGAPYTNDVYHLAQALGGVSPEER 779
EDLV +R G YTN +Y L V ER
Sbjct: 203 EDLVLERRGEHYTNGLYGLVTECESVWSRER 233
Score = 135 bits (341), Expect = 6e-32
Identities = 73/140 (52%), Positives = 87/140 (62%)
Frame = +3
Query: 336 ARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVF 515
A+T K G CY VT LGRFTAQD A R VK +FG G H +V+F
Sbjct: 363 AQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLF 422
Query: 516 TRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDL 695
T KEDLA SL DY+ D++N +LR LV ECG R CAFNNRATG EQ Q+ LM +VE L
Sbjct: 423 THKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVERL 482
Query: 696 VRDRGGAPYTNDVYHLAQAL 755
R+ GGA Y+ND++ AQ L
Sbjct: 483 ERETGGAFYSNDLFFQAQLL 502
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 137 bits (345), Expect = 2e-32
Identities = 79/174 (45%), Positives = 99/174 (56%)
Frame = +3
Query: 234 LEVAEPLCPSRHHEVNPRKTEEAKR*RKSPCSEVARTDPDCKERGRCYXXXXXXXXXXXX 413
++ EP C P + +R ++ P A+T K G CY
Sbjct: 78 VQAGEPACDQNV----PGGDRDLER-KEHPGGRHAQTQELYKAIGDCYLLSAPGPHVLLL 132
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VT LGRFTAQD A R VK +FG G H +V+FT KEDLA SL DY+ D++N +LR L
Sbjct: 133 VTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLFTHKEDLAGESLDDYLADTDNHSLRSL 192
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYHLAQAL 755
V ECG R CAFNNRATG EQ Q+ LM +VE L R+ GGA Y+ND++ AQ L
Sbjct: 193 VQECGRRYCAFNNRATGEEQREQLARLMAVVERLERETGGAFYSNDLFFQAQLL 246
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 114 bits (284), Expect = 3e-25
Identities = 61/151 (40%), Positives = 89/151 (58%)
Frame = +3
Query: 345 DPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRK 524
D CKE RC V QLGR+T ++Q+ +KA+FG H I++FTRK
Sbjct: 75 DTTCKEISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFGKPALKHMIMLFTRK 134
Query: 525 EDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRD 704
++L + SL D++ +S + L+ + ECG R CAFNNRA E+EAQV EL+ L+E +V+
Sbjct: 135 DNLEDQSLSDFI-ESADVKLKNITKECGDRYCAFNNRAKEAEKEAQVQELVELIEQMVQS 193
Query: 705 RGGAPYTNDVYHLAQALGGVSPEERLRKVAE 797
GGA +++D+Y EERL++ AE
Sbjct: 194 NGGAYFSDDIYK--------DTEERLKRKAE 216
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 98.2 bits (243), Expect = 1e-20
Identities = 45/114 (39%), Positives = 76/114 (66%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
V QLG FT +D++A + ++ +FG+ V +TIV+FTRKEDL E + DY++++EN+ L+ +
Sbjct: 590 VFQLGWFTQEDKRAVKELETIFGEEVLKYTIVLFTRKEDL-EVDIADYIKNAENRTLQNI 648
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYHLAQAL 755
+ CGGR+CAFNN+ TG +E Q L+ + L+ GG Y ++++++
Sbjct: 649 IKRCGGRICAFNNKETGQAREDQAAVLLTMANQLIESHGGHGYPQKWENISKSI 702
Score = 82.8 bits (203), Expect = 6e-16
Identities = 46/118 (38%), Positives = 67/118 (56%)
Frame = +3
Query: 369 RCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSL 548
RC V +G + +D++ GV+ +FG + IVVFTRK+DL S+
Sbjct: 146 RCLELCAPSLHVLLLVIAIGCYELEDKEVVCGVQEVFGAEARRYMIVVFTRKDDLEGDSV 205
Query: 549 QDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPY 722
QDY+ ++ LR+LV CGGR CA NN+ + E+ QV EL+ +V+ LV + GG PY
Sbjct: 206 QDYIEGLDS--LRELVENCGGRYCALNNKGSEEERVGQVRELLGMVQRLVGENGG-PY 260
Score = 72.8 bits (177), Expect = 6e-13
Identities = 39/104 (37%), Positives = 62/104 (59%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VT LG F+ +D+ ++A FGD + I++FTRKEDL + L+ +++ S + AL +L
Sbjct: 390 VTPLGSFSKKDEVVLDTLQASFGDKFVEYLIILFTRKEDLGDQDLEMFLK-SRSTALCKL 448
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYT 725
+ +C R C F+ R T E++ Q EL++ V LV+ G P T
Sbjct: 449 IKKCKDRYCVFSYRVTREEEQHQAEELLQTVVSLVQQHGDRPCT 492
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 89.4 bits (220), Expect = 7e-18
Identities = 47/132 (35%), Positives = 75/132 (56%)
Frame = +3
Query: 354 CKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 533
C+E C V LGR+T ++++A + +FG + I++FTRK+DL
Sbjct: 101 CREIAHCILLTSPGPHALLLVVPLGRYTQEERKAMEKILQMFGPRARRYMILLFTRKDDL 160
Query: 534 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGG 713
QDY++D+ ++ +++LV R C FNNRATG EQEAQ +L+ LV+ +V + G
Sbjct: 161 DGMHFQDYLKDA-SEDIQELVDMFRDRYCVFNNRATGTEQEAQRMQLLTLVQRVVMENEG 219
Query: 714 APYTNDVYHLAQ 749
YTN ++ A+
Sbjct: 220 GCYTNKMFQKAE 231
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 77.8 bits (190), Expect = 2e-14
Identities = 39/69 (56%), Positives = 50/69 (72%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VTQLGRFT +D+QA RG++ FG GV AHT++VFTR+EDL GSL++YVR ++N L
Sbjct: 187 VTQLGRFTEEDRQAVRGLQEAFGVGVLAHTVLVFTRREDLGGGSLEEYVRRTDNLHPALL 246
Query: 594 VAECGGRVC 620
A C R C
Sbjct: 247 DAVCARRHC 255
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,050,082
Number of extensions: 976527
Number of successful extensions: 4739
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4723
Number of HSP's successfully gapped: 10
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001549
(1237 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 201 9e-52
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 147 2e-35
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 123 4e-28
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 110 3e-24
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 110 3e-24
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 107 2e-23
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 97 3e-20
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 90 4e-18
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 201 bits (512), Expect = 9e-52
Identities = 107/186 (57%), Positives = 132/186 (70%), Gaps = 4/186 (2%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
S+V++TDP C+ERG CY VTQLGRFTAQDQQA R V+ +FG+ V +
Sbjct: 89 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMV 148
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
+VFTRKEDLA GSL DYV ++EN+ALR+LVAECGGRVCAF+NRATG EQEAQV +L+ +V
Sbjct: 149 IVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMV 208
Query: 687 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ----GCCLQRFLCEKP 854
E LV + GA Y+N+VY LAQ L PEERLR+VAERVA + Q G L L +
Sbjct: 209 EGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERVAARVQRRPWGAWLSARLWKWL 268
Query: 855 KAQRTW 872
K+ R+W
Sbjct: 269 KSPRSW 274
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 147 bits (371), Expect = 2e-35
Identities = 76/146 (52%), Positives = 97/146 (66%), Gaps = 2/146 (1%)
Frame = +3
Query: 357 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 536
KE RCY VTQLGR+T+QDQQA + VK +FG+ HTIV+FT KEDL
Sbjct: 93 KEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152
Query: 537 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 716
GSL DY+ DS+N+AL +LVA CGGR+CAFNNRA G Q+ QV ELM +EDL+ ++ G
Sbjct: 153 GGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGD 212
Query: 717 PYTNDVYHLAQ--ALGGVSPEERLRK 788
YTN +Y L Q G V +ER+++
Sbjct: 213 HYTNGLYSLIQRSKCGPVGSDERVKE 238
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 123 bits (308), Expect = 4e-28
Identities = 69/136 (50%), Positives = 86/136 (63%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VTQLGRFT +DQQ R ++ +FG GV HTI+VFTRKEDLA GSL+DYVR++ NQAL L
Sbjct: 129 VTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKEDLAGGSLEDYVRETNNQALAWL 188
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPE 773
R C FNNRA G EQEAQ+ ELM VE ++ + G Y+N Y Q
Sbjct: 189 DVTLARRHCGFNNRAQGEEQEAQLRELMEKVEAIMWENEGDYYSNKAYQYTQ------QN 242
Query: 774 ERLRKVAERVAQKQQG 821
RL+++ ER + QG
Sbjct: 243 FRLKELQERQVSQGQG 258
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 110 bits (275), Expect = 3e-24
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Frame = +3
Query: 357 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 536
K G CY V QLGRFTAQD A R VK +FG G H +++FT KEDL
Sbjct: 302 KNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLG 361
Query: 537 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 716
+L DYV +++N +L+ LV EC R CAFNN + EQ Q EL+ ++E L R+R G+
Sbjct: 362 GQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGS 421
Query: 717 PYTNDVY---HLAQALGGVSPEERLRKVAERV 803
++ND++ L Q G + +E R+ +V
Sbjct: 422 FHSNDLFLDAQLLQRTGAGACQEDYRQYQAKV 453
Score = 55.1 bits (131), Expect = 1e-07
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWR 461
S+V++TDP C+ERG CY VTQLGRFTAQDQQA R
Sbjct: 89 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVR 133
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 110 bits (275), Expect = 3e-24
Identities = 62/152 (40%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Frame = +3
Query: 357 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 536
K G CY V QLGRFTAQD A R VK +FG G H +++FT KEDL
Sbjct: 98 KNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLG 157
Query: 537 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 716
+L DYV +++N +L+ LV EC R CAFNN + EQ Q EL+ ++E L R+R G+
Sbjct: 158 GQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGS 217
Query: 717 PYTNDVY---HLAQALGGVSPEERLRKVAERV 803
++ND++ L Q G + +E R+ +V
Sbjct: 218 FHSNDLFLDAQLLQRTGAGACQEDYRQYQAKV 249
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 107 bits (268), Expect = 2e-23
Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 3/147 (2%)
Frame = +3
Query: 357 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 536
+E RC V QLGRFT +D+ A ++A+FG + + I++FTRKEDL
Sbjct: 512 EEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKEDLG 571
Query: 537 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRG-- 710
G+L+D++++S+N+ALR++ +CG RVCAFNN+ TG QE QV L+ V DL ++ G
Sbjct: 572 AGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQETQVKALLTKVNDLRKESGWS 631
Query: 711 GAPYTND-VYHLAQALGGVSPEERLRK 788
G P+T + V L + + +S E+L K
Sbjct: 632 GYPHTQENVSKLIKNVQEMSQAEKLLK 658
Score = 89.0 bits (219), Expect = 8e-18
Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
V +G FT +D++ +G++ +FG H I+VFTRK+DL + LQD++ +N+ L+QL
Sbjct: 100 VIAIGHFTREDEETAKGIQQVFGAEARRHIIIVFTRKDDLGDDLLQDFI--EKNKPLKQL 157
Query: 594 VAECGGRVCAFNNRATG-PEQEAQVTELMRLVEDLVRDRGGAPYTNDVYHLAQALGGVSP 770
V + GR C FNN+ EQ QV EL+R VE LV GG YH+ G
Sbjct: 158 VQDYEGRYCIFNNKTNSKDEQITQVLELLRKVESLVNTNGGP------YHVNFKTEGSRF 211
Query: 771 EERLRKVAERVAQKQQG 821
++ + + A + K QG
Sbjct: 212 QDCVNEAASQEGDKPQG 228
Score = 72.8 bits (177), Expect = 6e-13
Identities = 38/99 (38%), Positives = 58/99 (58%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VT LG +T D+ ++ FG+ + I++ TRKEDL + L ++R+S N+AL L
Sbjct: 330 VTPLGFYTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTFLRNS-NKALYGL 388
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRG 710
+ +C R AFN RATG E++ Q EL+ +E +V G
Sbjct: 389 IQKCKNRYSAFNYRATGEEEQRQADELLEKIESMVHQNG 427
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 97.1 bits (240), Expect = 3e-20
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Frame = +3
Query: 345 DPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRK 524
D CKE RC V LGR+T ++Q+ +KA+FG H +++FTRK
Sbjct: 75 DTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKSAMKHMVILFTRK 134
Query: 525 EDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RATGPEQEAQVTELMRLVEDLV 698
E+L S D++ D++ L+ +V ECG R CAF+N + + E+E+QV EL+ L+E +V
Sbjct: 135 EELEGQSFHDFIADAD-VGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQELVELIEKMV 193
Query: 699 RDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE 797
+ GA +++D+Y EERL++ E
Sbjct: 194 QCNEGAYFSDDIYK--------DTEERLKQREE 218
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 90.1 bits (222), Expect = 4e-18
Identities = 57/187 (30%), Positives = 98/187 (52%), Gaps = 22/187 (11%)
Frame = +3
Query: 357 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 536
KE RC V LGR+T ++ +A + +FG+ + I++FTRK+DL
Sbjct: 101 KEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 160
Query: 537 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 716
+ +L DY+R++ ++ L+ G R CA NN+ATG EQEAQ +L+ L++ +VR+
Sbjct: 161 DTNLHDYLREAPED-IQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEG 219
Query: 717 PYTNDVYHLA--------QALGGV--------------SPEERLRKVAERVAQKQQGCCL 830
YTN +Y A QA+ + EE++RK+ ++V Q+++ +
Sbjct: 220 CYTNRMYQRAEEEIQKQTQAMQELHRVELEREKARIREEYEEKIRKLEDKVEQEKRKKQM 279
Query: 831 QRFLCEK 851
++ L E+
Sbjct: 280 EKKLAEQ 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,308,006
Number of extensions: 962439
Number of successful extensions: 4637
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4535
Number of HSP's successfully gapped: 11
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001549
(1237 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 178 9e-45
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 178 9e-45
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 130 3e-30
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 130 3e-30
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 105 7e-23
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 103 4e-22
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 97 2e-20
Alignment gi|NP_997651.1| GTPase IMAP family member 8 [Mus musculus]. 97 2e-20
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 89 7e-18
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 79 7e-15
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 178 bits (451), Expect = 9e-45
Identities = 92/164 (56%), Positives = 112/164 (68%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
SE+ RTDP C E RC+ VTQLGRFT QD QA VK LFG V A T+
Sbjct: 88 SEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMARTV 147
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
VVFTR+EDLA SLQDYV ++N+ALR LVAECGGRVCA NNRATG E+EAQ +L+ +V
Sbjct: 148 VVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSEREAQAEQLLGMV 207
Query: 687 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ 818
LVR+ GGA Y+N+VY L Q P++++ KVAE VA++ Q
Sbjct: 208 ACLVREHGGAHYSNEVYELVQDTRCADPQDQVAKVAEIVAERMQ 251
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 178 bits (451), Expect = 9e-45
Identities = 92/164 (56%), Positives = 112/164 (68%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
SE+ RTDP C E RC+ VTQLGRFT QD QA VK LFG V A T+
Sbjct: 88 SEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMARTV 147
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
VVFTR+EDLA SLQDYV ++N+ALR LVAECGGRVCA NNRATG E+EAQ +L+ +V
Sbjct: 148 VVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSEREAQAEQLLGMV 207
Query: 687 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ 818
LVR+ GGA Y+N+VY L Q P++++ KVAE VA++ Q
Sbjct: 208 ACLVREHGGAHYSNEVYELVQDTRCADPQDQVAKVAEIVAERMQ 251
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 130 bits (326), Expect = 3e-30
Identities = 79/186 (42%), Positives = 110/186 (59%), Gaps = 13/186 (6%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
S+ D D K+ G CY VTQLGRFTA+D A R VK +FG GV H I
Sbjct: 88 SKAQNQDMD-KDIGDCYLLCAPGPHVLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
V+FTRKEDL E SL+++V ++N++LR L ECG R CAFNNRA+G EQ+ Q+ ELM LV
Sbjct: 147 VLFTRKEDLEEKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQGQLAELMALV 206
Query: 687 EDLVRDRGGAPYTNDVYHLAQAL--GGVSPEER-----LRKVAERV------AQKQQGCC 827
L ++ G+ ++ND++ A+AL G S + L KV + V ++Q+G
Sbjct: 207 RRLEQECEGSFHSNDLFLHAEALLREGYSVHQEAYRCYLAKVRQEVEKQRRELEEQEGSW 266
Query: 828 LQRFLC 845
+ + +C
Sbjct: 267 IAKMIC 272
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 130 bits (326), Expect = 3e-30
Identities = 71/143 (49%), Positives = 94/143 (65%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
S+ D D K+ G CY VTQLGRFTA+D A R VK +FG GV H I
Sbjct: 84 SKAQNQDMD-KDIGDCYLLCAPGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMI 142
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
V+FTRKEDLAE SL+++V ++N++LR LV ECG R CAFNNRA+G EQ+ Q+ ELM LV
Sbjct: 143 VLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRRYCAFNNRASGEEQQGQLAELMALV 202
Query: 687 EDLVRDRGGAPYTNDVYHLAQAL 755
L ++ G+ ++ND++ A+ L
Sbjct: 203 RRLEQECEGSFHSNDLFLHAETL 225
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 105 bits (262), Expect = 7e-23
Identities = 60/153 (39%), Positives = 86/153 (56%)
Frame = +3
Query: 339 RTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFT 518
+ + C E RC V QL RFT ++Q+ +KA+FG+ V + IV+FT
Sbjct: 73 KLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFGEEVMKYMIVLFT 132
Query: 519 RKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLV 698
RK+DL + SL D++ DS+ L+ ++ ECG R A NN+A E+E QV ELM LVE LV
Sbjct: 133 RKDDLEDQSLSDFIADSDTN-LKSIIKECGNRCLAINNKAERAERETQVQELMGLVETLV 191
Query: 699 RDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE 797
++ GG +++ VY A E RL+K E
Sbjct: 192 QNNGGLYFSHPVYKDA--------ERRLKKQVE 216
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 103 bits (256), Expect = 4e-22
Identities = 51/104 (49%), Positives = 75/104 (72%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
V Q+GR+TA+DQ R ++ +FG+ + A+TI+VFTRKEDLAEGSL++Y++++ N++L L
Sbjct: 191 VIQVGRYTAEDQAVARCLQEIFGNTILAYTILVFTRKEDLAEGSLEEYIQENNNKSLDVL 250
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYT 725
C R C FNN+A G EQEAQ+ +LM VE ++ + G YT
Sbjct: 251 DVACERRHCGFNNKAQGDEQEAQLKKLMEEVELILWENEGHCYT 294
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 97.4 bits (241), Expect = 2e-20
Identities = 43/97 (44%), Positives = 68/97 (70%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
V QLGRFT +D+ ++A F + + + IV+FTRKEDL +G L DY +++N+AL+++
Sbjct: 568 VLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKI 627
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRD 704
+ +C GRVCAFNN+ TG +QE QV L+++ L ++
Sbjct: 628 LKKCNGRVCAFNNKETGEDQETQVKGLLKIANSLKKN 664
Score = 65.9 bits (159), Expect = 6e-11
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VT +G +T +D++ G+ G H IVVFTR+++L E SL +Y+ E +L++L
Sbjct: 138 VTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKE--SLKEL 195
Query: 594 VAECGG-RVCAFNNRATGPEQEAQVTELMRLVEDLVRD 704
+ G R C FNN+A ++E QV +L+ +E L+ +
Sbjct: 196 IKNIGSRRCCTFNNKADKKQRELQVFKLLDAIELLMME 233
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/102 (35%), Positives = 56/102 (54%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VT LG D + +K +FG+ + TIV+FTRKED + +L ++ EN AL L
Sbjct: 368 VTPLGSSLKSDDDVFSIIKRIFGEKFTKFTIVLFTRKEDFEDQALDKVIK--ENDALYNL 425
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 719
+ G R FN RA+ E+++QV +L+ +E +V+ P
Sbjct: 426 TQKFGERYAIFNYRASVEEEQSQVGKLLSQIEKMVQCHSNKP 467
>ref|NP_997651.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 97.4 bits (241), Expect = 2e-20
Identities = 43/97 (44%), Positives = 68/97 (70%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
V QLGRFT +D+ ++A F + + + IV+FTRKEDL +G L DY +++N+AL+++
Sbjct: 568 VLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKI 627
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRD 704
+ +C GRVCAFNN+ TG +QE QV L+++ L ++
Sbjct: 628 LKKCNGRVCAFNNKETGEDQETQVKGLLKIANSLKKN 664
Score = 65.9 bits (159), Expect = 6e-11
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VT +G +T +D++ G+ G H IVVFTR+++L E SL +Y+ E +L++L
Sbjct: 138 VTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKE--SLKEL 195
Query: 594 VAECGG-RVCAFNNRATGPEQEAQVTELMRLVEDLVRD 704
+ G R C FNN+A ++E QV +L+ +E L+ +
Sbjct: 196 IKNIGSRRCCTFNNKADKKQRELQVFKLLDAIELLMME 233
Score = 63.9 bits (154), Expect = 2e-10
Identities = 36/102 (35%), Positives = 56/102 (54%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VT LG D + +K +FG+ + TIV+FTRKED + +L ++ EN AL L
Sbjct: 368 VTPLGSSLKSDDDVFSIIKRIFGEKFTKFTIVLFTRKEDFEDQALDKVIK--ENDALYNL 425
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 719
+ G R FN RA+ E+++QV +L+ +E +V+ P
Sbjct: 426 TQKFGERYAIFNYRASVEEEQSQVGKLLSQIEKMVQCHSNKP 467
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 89.0 bits (219), Expect = 7e-18
Identities = 45/128 (35%), Positives = 73/128 (57%)
Frame = +3
Query: 354 CKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 533
C E RC V +L R+T ++Q+ +K LFG+ + I++FT KEDL
Sbjct: 78 CFEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFGEAALKYMIILFTHKEDL 137
Query: 534 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGG 713
+ SL ++V D+ + L ++++CG R AFNN+A EQE QV +L+ L E +V GG
Sbjct: 138 EDQSLDNFVSDA-GEKLNNIISQCGKRYLAFNNKAALDEQENQVQQLIELTEKMVAQNGG 196
Query: 714 APYTNDVY 737
+ +++ +Y
Sbjct: 197 SYFSDKIY 204
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 79.0 bits (193), Expect = 7e-15
Identities = 38/114 (33%), Positives = 69/114 (60%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
V LGR+T ++ +A + + +FG I++ TRK+DL + + +Y+ + + +++
Sbjct: 120 VVPLGRYTVEEHKATQKILDMFGKQARRFMILLLTRKDDLEDTDIHEYLEKAP-KFFQEV 178
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYHLAQAL 755
+ E R C FNNRA+G E+E Q +L+ LV+ +VR+ GG +TN +Y A+ +
Sbjct: 179 MHEFQNRYCLFNNRASGAEKEEQKMQLLTLVQSMVRENGGRCFTNKMYESAECV 232
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,397,654
Number of extensions: 806251
Number of successful extensions: 3607
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3569
Number of HSP's successfully gapped: 16
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001549
(1237 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 347 8e-96
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 298 5e-81
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 136 2e-32
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 112 3e-25
Alignment gi|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelia... 90 2e-18
Alignment gi|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like ... 90 2e-18
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 68 9e-12
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 347 bits (890), Expect = 8e-96
Identities = 170/183 (92%), Positives = 171/183 (93%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
SEVARTDPDCKERGRCY VTQLGRFTAQDQQAWRGVKALFGDGVSAHTI
Sbjct: 93 SEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 152
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTEL+RLV
Sbjct: 153 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELLRLV 212
Query: 687 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR 866
EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR
Sbjct: 213 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR 272
Query: 867 TWW 875
TWW
Sbjct: 273 TWW 275
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 298 bits (762), Expect = 5e-81
Identities = 154/186 (82%), Positives = 159/186 (85%), Gaps = 3/186 (1%)
Frame = +3
Query: 327 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 506
SEVARTDPDCKERGRCY VTQLGRFTAQDQQAWRGVKALFGDGVSAHTI
Sbjct: 89 SEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 148
Query: 507 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLV 686
VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTEL+RLV
Sbjct: 149 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELLRLV 208
Query: 687 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVA---QKQQGCCLQRFLCEKPK 857
EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE+VA KQ+ L + P+
Sbjct: 209 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAEQVAGRQLKQRWGWLLASRWKWPE 268
Query: 858 AQRTWW 875
A TWW
Sbjct: 269 ALGTWW 274
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 136 bits (343), Expect = 2e-32
Identities = 71/131 (54%), Positives = 87/131 (66%)
Frame = +3
Query: 357 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 536
+E RC+ VTQLGRFT +D+Q R VK LFG V HTIV+FTRKEDL
Sbjct: 138 EEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRHTIVLFTRKEDLE 197
Query: 537 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 716
GSL Y+ S+N+AL +LVA CGGRVCAFNNRA G ++AQV ELM L+E LVR + G
Sbjct: 198 GGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMDLIESLVRAKKGD 257
Query: 717 PYTNDVYHLAQ 749
YTN +Y ++
Sbjct: 258 CYTNQLYRQSE 268
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 112 bits (281), Expect = 3e-25
Identities = 55/105 (52%), Positives = 76/105 (72%)
Frame = +3
Query: 414 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 593
VTQLGRFT +DQ+ R ++ +FG GV AHTI+VFTRKEDL GSL++Y+R+++N+ L QL
Sbjct: 166 VTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQL 225
Query: 594 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTN 728
C R C FNN+ G EQEAQ+ ELM+ +E ++ + G Y+N
Sbjct: 226 DVICERRHCGFNNKVEGAEQEAQLEELMQQIESILWENEGHYYSN 270
>ref|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelial-like [Sus scrofa].
Length = 767
Score = 90.1 bits (222), Expect = 2e-18
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Frame = +3
Query: 465 VKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RA 638
+KA+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 582 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRT 640
Query: 639 TGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE 797
E+EAQ+ EL+ L+E +VRD GA YT+ +Y +ERLR E
Sbjct: 641 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 685
>ref|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like [Sus scrofa].
Length = 208
Score = 90.1 bits (222), Expect = 2e-18
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Frame = +3
Query: 465 VKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RA 638
+KA+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 23 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRT 81
Query: 639 TGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE 797
E+EAQ+ EL+ L+E +VRD GA YT+ +Y +ERLR E
Sbjct: 82 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 126
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like
[Sus scrofa].
Length = 315
Score = 68.2 bits (165), Expect = 9e-12
Identities = 55/170 (32%), Positives = 84/170 (49%)
Frame = +3
Query: 357 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 536
KE RC V LGR T Q QA + + G+ I + TRK+DL
Sbjct: 95 KEICRCMILTSPGXHALLLVIPLGR-TRQRAQASSKIXPV-GERAMQRMIXLVTRKDDLE 152
Query: 537 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 716
+Y R++ ++++R+L+ + R C NNRATG E++ Q +L+ LV +V++ G
Sbjct: 153 GTDFHEYXREA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGER 211
Query: 717 PYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR 866
YTN +Y ++ + EE R ER K + C EKPK+Q+
Sbjct: 212 YYTNYLYEKSEEVIQKVIEENRRAELEREKAKGRQECE-----EKPKSQQ 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,156,358
Number of extensions: 613670
Number of successful extensions: 3076
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 7
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001549
(1237 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 932 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 932 bits (470), Expect = 0.0
Identities = 479/482 (99%)
Strand = Plus / Plus
Query: 325 gctccgaagtcgcccggacagaccccgactgcaaggagagaggccgctgctacctgctcg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874231 gctccgaagtcgcccggacagaccccgactgcaaggagagaggccgctgctacctgctcg 6874290
Query: 385 cagcccccgggccccacgccctgctcctggtgacccagctgggccgcttcacggcccagg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874291 cagcccccgggccccacgccctgctcctggtgacccagctgggccgcttcacggcccagg 6874350
Query: 445 accagcaggcctggaggggggtgaaggcgctgttcggggacggggtctcggcgcacacga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874351 accagcaggcctggaggggggtgaaggcgctgttcggggacggggtctcggcgcacacga 6874410
Query: 505 tcgtggtcttcacccgcaaggaggacctggcggagggctccctgcaggactacgtgcgcg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874411 tcgtggtcttcacccgcaaggaggacctggcggagggctccctgcaggactacgtgcgcg 6874470
Query: 565 acagcgagaaccaggcgctcaggcagctggtggccgagtgcgggggccgcgtctgcgcct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874471 acagcgagaaccaggcgctcaggcagctggtggccgagtgcgggggccgcgtctgcgcct 6874530
Query: 625 ttaacaaccgcgccacgggtcccgagcaggaggcgcaggtgacggagctgatgaggctgg 684
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6874531 ttaacaaccgcgccacgggtcccgagcaggaggcgcaggtgacggagctgctgaggctgg 6874590
Query: 685 tggaggatctggtgagggaccgcggcggcgccccctacaccaacgacgtgtaccacctgg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874591 tggaggatctggtgagggaccgcggcggcgccccctacaccaacgacgtgtaccacctgg 6874650
Query: 745 cgcaggccctgggcggcgtgagcccggaggagaggctccgcaaggtggcggagcgagtgg 804
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 6874651 cgcaggccctgggcggcgtgagcccggaggagaggctccgcaaggtggccgagcaagtgg 6874710
Query: 805 ca 806
||
Sbjct: 6874711 ca 6874712
Score = 73.8 bits (37), Expect = 2e-10
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 389 ccccgggccccacgccctgctcctggtgacccagctgggccgcttcacg 437
|||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 6631213 ccccgggccccacgccgtcctcctggtgacacagctgggccgcttcacg 6631165
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,527,544
Number of extensions: 1753
Number of successful extensions: 1753
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1753
Number of HSP's successfully gapped: 2
Length of query: 1237
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1216
Effective length of database: 2,808,413,156
Effective search space: 3415030397696
Effective search space used: 3415030397696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)