Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001734
(1024 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014411.1| histone H3.3 [Bos taurus]. 265 6e-71
Alignment gi|NP_001229500.1| H3 histone, family 3B [Bos taurus]. 265 6e-71
Alignment gi|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus]. 261 9e-70
Alignment gi|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus]. 261 9e-70
Alignment gi|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus]. 260 2e-69
Alignment gi|NP_001092840.1| H3 histone, family 3C [Bos taurus]. 258 5e-69
Alignment gi|NP_001160041.1| histone H3.2 [Bos taurus]. 258 5e-69
Alignment gi|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos... 258 5e-69
Alignment gi|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos... 258 5e-69
Alignment gi|XP_001249529.1| PREDICTED: H3 histone, family 3A [Bos taurus]. 258 5e-69
>ref|NP_001014411.1| histone H3.3 [Bos taurus].
Length = 136
Score = 265 bits (676), Expect = 6e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001229500.1| H3 histone, family 3B [Bos taurus].
Length = 136
Score = 265 bits (676), Expect = 6e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002688969.1| PREDICTED: histone H3.3B-like [Bos taurus].
Length = 136
Score = 261 bits (666), Expect = 9e-70
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
+PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136
>ref|XP_002684244.1| PREDICTED: H3 histone, family 3A [Bos taurus].
Length = 136
Score = 261 bits (666), Expect = 9e-70
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTA KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTASKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
+PKDIQLARRIRGERA
Sbjct: 121 IPKDIQLARRIRGERA 136
>ref|XP_002688445.1| PREDICTED: histone H3.3B-like [Bos taurus].
Length = 136
Score = 260 bits (664), Expect = 2e-69
Identities = 133/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARK+APS GGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKTAPSIGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQD+KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001092840.1| H3 histone, family 3C [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 131/136 (96%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQL TKAARKSAPSTGG+KKPHRYRPGTVALREIRR+QKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLVTKAARKSAPSTGGMKKPHRYRPGTVALREIRRHQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT+
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTV 120
Query: 508 MPKDIQLARRIRGERA 555
MP+DIQLARRIRGERA
Sbjct: 121 MPRDIQLARRIRGERA 136
>ref|NP_001160041.1| histone H3.2 [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002686103.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_002686099.1| PREDICTED: histone cluster 2, H3c2-like [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001249529.1| PREDICTED: H3 histone, family 3A [Bos taurus].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQL TKAARK+APS GGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLTTKAARKTAPSIGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQD+KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDYKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,863,893
Number of extensions: 926347
Number of successful extensions: 2607
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 2589
Number of HSP's successfully gapped: 59
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001734
(1024 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_858804.1| PREDICTED: similar to H3 histone, family 3B iso... 265 7e-71
Alignment gi|XP_533123.2| PREDICTED: similar to H3 histone, family 3B iso... 265 7e-71
Alignment gi|XP_537232.1| PREDICTED: similar to H3 histone, family 3B iso... 265 7e-71
Alignment gi|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicte... 259 4e-69
Alignment gi|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicte... 259 4e-69
Alignment gi|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isof... 258 5e-69
Alignment gi|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isof... 258 5e-69
Alignment gi|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familia... 258 5e-69
Alignment gi|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicte... 256 2e-68
Alignment gi|XP_545428.1| PREDICTED: similar to histone 1, H2ai (predicte... 256 2e-68
>ref|XP_858804.1| PREDICTED: similar to H3 histone, family 3B isoform 4 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_533123.2| PREDICTED: similar to H3 histone, family 3B isoform 2 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_537232.1| PREDICTED: similar to H3 histone, family 3B isoform 1 [Canis
familiaris].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_859248.1| PREDICTED: similar to histone 1, H2ai (predicted) isoform 3 [Canis
familiaris].
Length = 259
Score = 259 bits (661), Expect = 4e-69
Identities = 133/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA*VKA 567
MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140
>ref|XP_537880.2| PREDICTED: similar to histone 1, H2ai (predicted) isoform 1 [Canis
familiaris].
Length = 259
Score = 259 bits (661), Expect = 4e-69
Identities = 133/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA*VKA 567
MPKDIQLARRIRGERA VK+
Sbjct: 121 MPKDIQLARRIRGERAEVKS 140
>ref|XP_540290.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
familiaris].
Length = 174
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174
>ref|XP_540285.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Canis
familiaris].
Length = 174
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 39 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 98
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 99 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 158
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 159 MPKDIQLARRIRGERA 174
>ref|XP_850744.1| PREDICTED: similar to CG31613-PA [Canis familiaris].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_854287.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis
familiaris].
Length = 156
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 21 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 80
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 81 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 140
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 141 MPKDIQLARRIRGERA 156
>ref|XP_545428.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis
familiaris].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,480,854
Number of extensions: 960551
Number of successful extensions: 2754
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2748
Number of HSP's successfully gapped: 29
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001734
(1024 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002098.1| histone H3.3 [Homo sapiens]. 265 7e-71
Alignment gi|NP_005315.1| histone H3.3 [Homo sapiens]. 265 7e-71
Alignment gi|NP_001005464.1| histone H3.2 [Homo sapiens]. 258 5e-69
Alignment gi|NP_066403.2| histone H3.2 [Homo sapiens]. 258 5e-69
Alignment gi|NP_001116847.1| histone H3.2 [Homo sapiens]. 258 5e-69
Alignment gi|NP_003521.2| histone cluster 1, H3d [Homo sapiens]. 256 2e-68
Alignment gi|NP_066298.1| histone H3.1 [Homo sapiens]. 256 2e-68
Alignment gi|NP_003527.1| histone H3.1 [Homo sapiens]. 256 2e-68
Alignment gi|NP_003528.1| histone H3.1 [Homo sapiens]. 256 2e-68
Alignment gi|NP_003526.1| histone H3.1 [Homo sapiens]. 256 2e-68
>ref|NP_002098.1| histone H3.3 [Homo sapiens].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_005315.1| histone H3.3 [Homo sapiens].
Length = 136
Score = 265 bits (676), Expect = 7e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001005464.1| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_066403.2| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_001116847.1| histone H3.2 [Homo sapiens].
Length = 136
Score = 258 bits (660), Expect = 5e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003521.2| histone cluster 1, H3d [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_066298.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003527.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003528.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_003526.1| histone H3.1 [Homo sapiens].
Length = 136
Score = 256 bits (655), Expect = 2e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,799,052
Number of extensions: 939415
Number of successful extensions: 2454
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2450
Number of HSP's successfully gapped: 19
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001734
(1024 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032237.1| histone H3.3 [Mus musculus]. 265 6e-71
Alignment gi|NP_032236.1| histone H3.3 [Mus musculus]. 265 6e-71
Alignment gi|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus]. 263 1e-70
Alignment gi|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus ... 261 6e-70
Alignment gi|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus]. 260 1e-69
Alignment gi|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus]. 259 2e-69
Alignment gi|NP_473386.1| histone H3.2 [Mus musculus]. 258 4e-69
Alignment gi|NP_038576.1| histone H3.2 [Mus musculus]. 258 4e-69
Alignment gi|NP_835587.1| histone H3.2 [Mus musculus]. 258 4e-69
Alignment gi|NP_835512.1| histone H3.2 [Mus musculus]. 258 4e-69
>ref|NP_032237.1| histone H3.3 [Mus musculus].
Length = 136
Score = 265 bits (676), Expect = 6e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_032236.1| histone H3.3 [Mus musculus].
Length = 136
Score = 265 bits (676), Expect = 6e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003085943.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 263 bits (673), Expect = 1e-70
Identities = 135/136 (99%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKATE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001477409.1| PREDICTED: histone H3.3-like isoform 1 [Mus musculus].
Length = 136
Score = 261 bits (667), Expect = 6e-70
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPS GGVKKPHRYRPGTVALREIRRYQK+TE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSIGGVKKPHRYRPGTVALREIRRYQKATE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_894986.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 260 bits (665), Expect = 1e-69
Identities = 134/136 (98%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MA TKQTARKSTGGKAPRKQLATKA RKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MALTKQTARKSTGGKAPRKQLATKATRKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003086287.1| PREDICTED: histone H3.3-like [Mus musculus].
Length = 136
Score = 259 bits (663), Expect = 2e-69
Identities = 134/136 (98%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MA TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MALTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLV EIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVXEIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_473386.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_038576.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_835587.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|NP_835512.1| histone H3.2 [Mus musculus].
Length = 136
Score = 258 bits (660), Expect = 4e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,323,787
Number of extensions: 794762
Number of successful extensions: 2124
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 2118
Number of HSP's successfully gapped: 30
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001734
(1024 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999095.1| histone H3.3 [Sus scrofa]. 265 4e-71
Alignment gi|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa]. 265 4e-71
Alignment gi|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa]. 258 3e-69
Alignment gi|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa]. 258 3e-69
Alignment gi|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410... 258 4e-69
Alignment gi|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_003356599.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_001927401.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
Alignment gi|XP_001927414.1| PREDICTED: histone H3.1-like [Sus scrofa]. 256 1e-68
>ref|NP_999095.1| histone H3.3 [Sus scrofa].
Length = 136
Score = 265 bits (676), Expect = 4e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003131242.1| PREDICTED: histone H3.3-like [Sus scrofa].
Length = 136
Score = 265 bits (676), Expect = 4e-71
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003355255.1| PREDICTED: histone H3.2-like [Sus scrofa].
Length = 136
Score = 258 bits (660), Expect = 3e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003125833.1| PREDICTED: histone H3.2 [Sus scrofa].
Length = 136
Score = 258 bits (660), Expect = 3e-69
Identities = 132/136 (97%), Positives = 135/136 (99%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356567.1| PREDICTED: hypothetical protein LOC100627410 [Sus scrofa].
Length = 282
Score = 258 bits (659), Expect = 4e-69
Identities = 133/136 (97%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
+ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 147 VARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 206
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 207 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 266
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLA IRGERA
Sbjct: 267 MPKDIQLAHCIRGERA 282
>ref|XP_003128260.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356602.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_003356599.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001927401.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>ref|XP_001927414.1| PREDICTED: histone H3.1-like [Sus scrofa].
Length = 136
Score = 256 bits (655), Expect = 1e-68
Identities = 131/136 (96%), Positives = 134/136 (98%)
Frame = +1
Query: 148 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 327
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 328 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 507
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 508 MPKDIQLARRIRGERA 555
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,061,212
Number of extensions: 594349
Number of successful extensions: 1632
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1628
Number of HSP's successfully gapped: 17
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001734
(1024 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 922 0.0
Sscrofa_Chr07 184 6e-44
Sscrofa_Chr04 137 1e-29
Sscrofa_Chr09 117 1e-23
Sscrofa_Chr03 96 5e-17
Sscrofa_Chr15 60 3e-06
Sscrofa_ChrX 58 1e-05
>Sscrofa_Chr12
|| Length = 63588571
Score = 922 bits (465), Expect = 0.0
Identities = 559/585 (95%), Gaps = 6/585 (1%)
Strand = Plus / Plus
Query: 427 caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579820 caggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgccatc 5579879
Query: 487 cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579880 cacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccggatacgggga 5579939
Query: 547 gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579940 gagagagcttaagtgaaggcagtttttatggtgttttgtagtaaattctgtaaaatactt 5579999
Query: 607 tggtttaatttgtgacnnnnnnngtaagaaattgtttataatatgttgcatttgtactta 666
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 5580000 tggtttaatttgtgactttttttgtaagaaattgtttataatatgttgcatttgtactta 5580059
Query: 667 agtcattccatctttcactcaggatgaatgcgaaaagtgactgttcacagacctcagtga 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580060 agtcattccatctttcactcaggatgaatgcgaaaagtgactgttcacagacctcagtga 5580119
Query: 727 tgtgagcactgttgctcaggagtgacaagttgctaatatgcagaagggatgggtgatatt 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580120 tgtgagcactgttgctcaggagtgacaagttgctaatatgcagaagggatgggtgatatt 5580179
Query: 787 tcttgcttctcatgatgcatgtttctgtatgttaatgacctggtgggtagctattaaggt 846
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 5580180 tcttgcttctcatgatgcatgtttctgtatgttaatgacttgttgggtagctattaaggt 5580239
Query: 847 actaaaatttgat-aatgtgtacagggtccttttggcataaaactgggtatgacttgatc 905
|||| || ||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 5580240 actagaa-ttgataaatgtgtacagggtccttttgcaataaaactggttatgacttgatc 5580298
Query: 906 ccagtgttt-accattggggcttgtaagtctgaccatacatcacggtgatagaatgtggg 964
| ||||||| || ||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 5580299 caagtgtttaacaattggggctgttaagtctgaccatacatcactgtgatagaatgtggg 5580358
Query: 965 c-ttttcaagggtgaggat-cnagtcttaacc-cagtgtaactta 1006
| ||||||||||||| ||| | |||||||||| ||||||||||||
Sbjct: 5580359 ctttttcaagggtgaagatacaagtcttaaccacagtgtaactta 5580403
Score = 317 bits (160), Expect = 7e-84
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 267 tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 326
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579573 tcgctccaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 5579632
Query: 327 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579633 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 5579692
Query: 387 aactgacttgaggttccagagcgccgccattggtgcgcttcagg 430
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579693 aactgacttgaggttccagagcgccgccattggtgcgcttcagg 5579736
Score = 270 bits (136), Expect = 1e-69
Identities = 139/140 (99%)
Strand = Plus / Plus
Query: 137 ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5579323 ggtaaaagaaaatggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgc 5579382
Query: 197 cccgcaaacagctggccactaaagctgccaggaaaagcgccccctctaccggcggggtga 256
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5579383 cccgcaaacagctggccactaaagctgccaggaaaagcgctccctctaccggcggggtga 5579442
Query: 257 aaaaacctcatcgctacagg 276
||||||||||||||||||||
Sbjct: 5579443 aaaaacctcatcgctacagg 5579462
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 11 ctggagcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgact 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578727 ctggagcgcagagcggtttggtcgttcgttggagttgcttcttgctttggttcggcgact 5578786
Query: 71 gcggctcttcattgggcggcgggagcggcacggcggtgggggaagcggcctcagacttcg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578787 gcggctcttcattgggcggcgggagcggcacggcggtgggggaagcggcctcagacttcg 5578846
Query: 131 ctgttgggtaa 141
|||||||||||
Sbjct: 5578847 ctgttgggtaa 5578857
>Sscrofa_Chr07
|| Length = 134764511
Score = 184 bits (93), Expect = 6e-44
Identities = 315/389 (80%)
Strand = Plus / Minus
Query: 148 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 207
||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 23089448 atggctcgtaccaagcagacagctcgcaagtccaccggcggcaaggcgccgcgcaagcag 23089389
Query: 208 ctggccactaaagctgccaggaaaagcgccccctctaccggcggggtgaaaaaacctcat 267
|||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 23089388 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 23089329
Query: 268 cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 327
|||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 23089328 cgctactggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 23089269
Query: 328 cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 387
|| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 23089268 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 23089209
Query: 388 actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 447
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || |||
Sbjct: 23089208 accgacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 23089149
Query: 448 ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 507
|||||||| | || || || ||||| ||||||||||||||||| ||| | |||||||||
Sbjct: 23089148 ctggtggggctcttcgaggacaccaacctgtgtgccatccacgccaagcgcgtcaccatc 23089089
Query: 508 atgcccaaagacatccagttggctcgccg 536
|||||||| ||||||||| ||||||||||
Sbjct: 23089088 atgcccaaggacatccagctggctcgccg 23089060
Score = 176 bits (89), Expect = 2e-41
Identities = 314/389 (80%)
Strand = Plus / Minus
Query: 148 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacag 207
||||| || ||||||||||| ||||| |||||||| || || || ||||| ||||| |||
Sbjct: 22080010 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcag 22079951
Query: 208 ctggccactaaagctgccaggaaaagcgccccctctaccggcggggtgaaaaaacctcat 267
|||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 22079950 ctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcac 22079891
Query: 268 cgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggag 327
|||||| ||||||| || || || || || || ||||| || ||||| ||||||||||||
Sbjct: 22079890 cgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacggag 22079831
Query: 328 cttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaa 387
|| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 22079830 ctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaag 22079771
Query: 388 actgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtac 447
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || |||
Sbjct: 22079770 acggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctac 22079711
Query: 448 ctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccatc 507
|||||||| | || || || ||||| ||||| ||||||||||| ||| | |||||||||
Sbjct: 22079710 ctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatc 22079651
Query: 508 atgcccaaagacatccagttggctcgccg 536
|||||||| ||||||||| ||||||||||
Sbjct: 22079650 atgcccaaggacatccagctggctcgccg 22079622
Score = 168 bits (85), Expect = 4e-39
Identities = 304/377 (80%)
Strand = Plus / Minus
Query: 160 aagcagactgctcgtaagtccacgggtgggaaagcgccccgcaaacagctggccactaaa 219
|||||||| ||||| |||||||| || || || ||||| ||||| ||||||||||| ||
Sbjct: 23187070 aagcagaccgctcgcaagtccaccggcggcaaggcgccgcgcaagcagctggccaccaag 23187011
Query: 220 gctgccaggaaaagcgccccctctaccggcggggtgaaaaaacctcatcgctacaggccc 279
|| ||| | || ||||| ||| | |||||||| ||||| || || || |||||| |||||
Sbjct: 23187010 gcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgcaccgctaccggccc 23186951
Query: 280 gggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacggagcttctgatccgg 339
|| || || || || || || ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 23186950 ggcacggtggccctgcgcgagatccggcgctaccagaagtccacggagctgctgatccgc 23186891
Query: 340 aagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactgacttgagg 399
|||||||| |||||| || ||||| | |||||||| ||||| ||||| || ||| || |
Sbjct: 23186890 aagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaagacggacctgcgc 23186831
Query: 400 ttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgtacctggtgggttta 459
||||||||| | ||| | ||||| |||||||| | || || ||||||||||| |
Sbjct: 23186830 ttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggcctacctggtggggctc 23186771
Query: 460 tttgaagataccaatctgtgtgccatccacgctaagagagtcaccatcatgcccaaagac 519
|| || || ||||| ||||| ||||||||||| ||| | ||||||||||||||||| |||
Sbjct: 23186770 ttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccatcatgcccaaggac 23186711
Query: 520 atccagttggctcgccg 536
|||||| ||||||||||
Sbjct: 23186710 atccagctggctcgccg 23186694
Score = 167 bits (84), Expect = 1e-38
Identities = 331/412 (80%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 148 atggcccgaaccaagcagactgctcgtaagtccacgggtgggaaag-cgccccgcaaaca 206
||||| || ||||||||||| ||||| |||||||| || || || | |||| ||||| ||
Sbjct: 23179687 atggctcgtaccaagcagaccgctcgcaagtccaccggcggcaagggcgccgcgcaagca 23179628
Query: 207 gctggccactaaagctgccaggaaaagcgccccctctaccggcggggtgaaaaaacctca 266
||||||||| || || ||| | || ||||| ||| | |||||||| ||||| || || ||
Sbjct: 23179627 gctggccaccaaggcggcccgcaagagcgcgcccgccaccggcggcgtgaagaagccgca 23179568
Query: 267 tcgctacaggcccgggaccgtcgcgcttcgagaaatccgtcgttaccaaaagtccacgga 326
|||||| ||||||| || || || || || || ||||| || ||||| |||||||||||
Sbjct: 23179567 ccgctaccggcccggcacggtggccctgcgcgagatccggcgctaccagaagtccacgga 23179508
Query: 327 gcttctgatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaa 386
||| |||||||| |||||||| |||||| || ||||| | |||||||| ||||| |||||
Sbjct: 23179507 gctgctgatccgcaagctgccgttccagcggctggtgcgcgagatcgcgcaggacttcaa 23179448
Query: 387 aactgacttgaggttccagagcgccgccattggtgcgcttcaggaggctagtgaagcgta 446
|| ||| || | ||||||||| | ||| | ||||| |||||||| | || || ||
Sbjct: 23179447 gacggacctgcgcttccagagctcggccgtgatggcgctgcaggaggcgtgcgaggccta 23179388
Query: 447 cctggtgggtttatttgaagataccaatctgtgtgccatccacgctaagagagtcaccat 506
||||||||| | || || || ||||| ||||| ||||||||||| ||| | ||||||||
Sbjct: 23179387 cctggtggggctcttcgaggacaccaacctgtgcgccatccacgccaagcgcgtcaccat 23179328
Query: 507 catgcccaaagacatccagttggctcgccggatacggggagagagagcttaa 558
||||||||| ||||||||| |||||||||| || || || || |||||||||
Sbjct: 23179327 catgcccaaggacatccagctggctcgccgcatccgcggggaaagagcttaa 23179276
Score = 103 bits (52), Expect = 2e-19
Identities = 229/288 (79%)
Strand = Plus / Plus
Query: 238 ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 297
|||||||| || |||||||| ||||||||||| |||||||| || ||||| || || ||
Sbjct: 5756374 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 5756433
Query: 298 gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagagg 357
||||| | ||||| || |||||||| || |||||||| || ||||| ||||||||| |
Sbjct: 5756434 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 5756493
Query: 358 ttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccatt 417
||||| |||| || || ||||| |||||||| || || | |||||||| || || |||
Sbjct: 5756494 ctggtgcgggaaattgctcaggacttcaaaacagatctgcgcttccagagtgcagctatt 5756553
Query: 418 ggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctg 477
||||| | |||||||| ||||| || || ||||| || | |||||||| ||||| |||
Sbjct: 5756554 ggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacctg 5756613
Query: 478 tgtgccatccacgctaagagagtcaccatcatgcccaaagacatccag 525
||||| ||||| || || | || || || ||||| ||||||||||||
Sbjct: 5756614 tgtgctatccatgccaaacgtgtaacaattatgccaaaagacatccag 5756661
>Sscrofa_Chr04
|| Length = 143465943
Score = 137 bits (69), Expect = 1e-29
Identities = 237/293 (80%)
Strand = Plus / Minus
Query: 244 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 303
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108522382 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108522323
Query: 304 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 363
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108522322 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108522263
Query: 364 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 423
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108522262 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108522203
Query: 424 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 483
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108522202 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108522143
Query: 484 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 536
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108522142 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108522090
Score = 137 bits (69), Expect = 1e-29
Identities = 237/293 (80%)
Strand = Plus / Minus
Query: 244 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 303
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108799627 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108799568
Query: 304 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 363
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108799567 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108799508
Query: 364 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 423
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108799507 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108799448
Query: 424 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 483
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108799447 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108799388
Query: 484 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 536
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108799387 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108799335
Score = 137 bits (69), Expect = 1e-29
Identities = 237/293 (80%)
Strand = Plus / Plus
Query: 244 accggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcgagaaatc 303
|||||||| ||||| || || || |||||| |||| || ||||| || || || || |||
Sbjct: 108826607 accggcggcgtgaagaagccccaccgctaccggccgggcaccgtggccctgcgggagatc 108826666
Query: 304 cgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagaggttggtg 363
|| || ||||| ||||| || ||||| |||||||| ||||||||||||||| | |||||
Sbjct: 108826667 cggcgctaccagaagtcgaccgagctgctgatccgcaagctgcccttccagcgcctggtg 108826726
Query: 364 agggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccattggtgcg 423
| |||||||| ||||| ||||| || ||| || | ||||||||| | ||| | |||
Sbjct: 108826727 cgcgagatcgcgcaggacttcaagacggacctgcgcttccagagctcggccgtgatggcg 108826786
Query: 424 cttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatctgtgtgcc 483
|| |||||||| || || || ||||||||||| | |||||||| || || |||||||||
Sbjct: 108826787 ctgcaggaggcgagcgaggcctacctggtggggctgtttgaagacacgaacctgtgtgcc 108826846
Query: 484 atccacgctaagagagtcaccatcatgcccaaagacatccagttggctcgccg 536
|||||||| ||| | || |||||||||||||||||||||||| |||| |||||
Sbjct: 108826847 atccacgccaagcgcgtgaccatcatgcccaaagacatccagctggcccgccg 108826899
>Sscrofa_Chr09
|| Length = 153670197
Score = 117 bits (59), Expect = 1e-23
Identities = 71/75 (94%)
Strand = Plus / Minus
Query: 741 ctcaggagtgacaagttgctaatatgcagaagggatgggtgatatttcttgcttctcatg 800
||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct: 22972573 ctcaggagtgacacgttgctaatatgcagaaggaatgagtgatatttcttgcttatcatg 22972514
Query: 801 atgcatgtttctgta 815
|||||||||||||||
Sbjct: 22972513 atgcatgtttctgta 22972499
>Sscrofa_Chr03
|| Length = 144787322
Score = 95.6 bits (48), Expect = 5e-17
Identities = 202/252 (80%), Gaps = 1/252 (0%)
Strand = Plus / Plus
Query: 238 ccctctaccggcggggtgaaaaaacctcatcgctacaggcccgggaccgtcgcgcttcga 297
|||||||| || |||||||| ||||||||||| |||||||| || ||||| || || ||
Sbjct: 106880436 ccctctactggaggggtgaagaaacctcatcgttacaggcctggtaccgtggcactccgt 106880495
Query: 298 gaaatccgtcgttaccaaaagtccacggagcttctgatccggaagctgcccttccagag- 356
||||| | ||||| || |||||||| || |||||||| || ||||| ||||||||| |
Sbjct: 106880496 gaaattagacgttatcagaagtccactgaacttctgattcgcaagcttcccttccagcgt 106880555
Query: 357 gttggtgagggagatcgcccaggatttcaaaactgacttgaggttccagagcgccgccat 416
|||||| |||| || || ||||| |||||||| || || | |||||||| || || ||
Sbjct: 106880556 cttggtgcgggaaattgctcaggacttcaaaacagatatgcgcttccagagtgcagctat 106880615
Query: 417 tggtgcgcttcaggaggctagtgaagcgtacctggtgggtttatttgaagataccaatct 476
|||||| | |||||||| ||||| || || ||||| || | |||||||| ||||| ||
Sbjct: 106880616 tggtgctttgcaggaggcaagtgaggcctatctggttggcctttttgaagacaccaacct 106880675
Query: 477 gtgtgccatcca 488
|||||| |||||
Sbjct: 106880676 gtgtgctatcca 106880687
>Sscrofa_Chr15
|| Length = 157681621
Score = 60.0 bits (30), Expect = 3e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 333 gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 392
||||| ||||| ||| ||||||||||||| ||||||| || |||||| |||||||||||
Sbjct: 153929629 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 153929570
Query: 393 ct 394
||
Sbjct: 153929569 ct 153929568
Score = 60.0 bits (30), Expect = 3e-06
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 333 gatccggaagctgcccttccagaggttggtgagggagatcgcccaggatttcaaaactga 392
||||| ||||| ||| ||||||||||||| ||||||| || |||||| |||||||||||
Sbjct: 154371033 gatccagaagcggcctttccagaggttggggagggagttcacccagggcttcaaaactga 154371092
Query: 393 ct 394
||
Sbjct: 154371093 ct 154371094
>Sscrofa_ChrX
|| Length = 144288218
Score = 58.0 bits (29), Expect = 1e-05
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 730 gagcactgttgctcaggagtgacaagttgctaatatgcagaagggatgggtgatatttct 789
||||||||| ||||| ||||| ||| ||||||| | ||||| |||||||||||| ||
Sbjct: 112566904 gagcactgtggctcaagagtggcaaactgctaatctacagaatggatgggtgatagtttc 112566963
Query: 790 tgcttctcatgatgcatgtttctgtatgttaat 822
| || |||||||||||| ||| ||||| |||||
Sbjct: 112566964 tcctcctcatgatgcatatttttgtatattaat 112566996
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,004,599
Number of extensions: 171
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 24
Length of query: 1024
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1003
Effective length of database: 2,808,413,156
Effective search space: 2816838395468
Effective search space used: 2816838395468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)