Animal-Genome cDNA 20110601C-001760


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001760
         (1263 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001108328.1| tubulin alpha-1B chain [Bos taurus].              697   0.0  
Alignment   gi|NP_001159977.1| tubulin alpha-1B chain [Bos taurus].              695   0.0  
Alignment   gi|NP_001029376.1| tubulin alpha-1C chain [Bos taurus].              693   0.0  
Alignment   gi|NP_001039875.1| tubulin alpha-1D chain [Bos taurus].              693   0.0  
Alignment   gi|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos ...   690   0.0  
Alignment   gi|XP_001254236.1| PREDICTED: tubulin alpha-1C chain-like isofo...   690   0.0  
Alignment   gi|NP_001033252.1| tubulin alpha-3 chain [Bos taurus].               689   0.0  
Alignment   gi|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus].             689   0.0  
Alignment   gi|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus].             689   0.0  
Alignment   gi|XP_002685663.1| PREDICTED: tubulin alpha-1C chain-like [Bos ...   688   0.0  

>ref|NP_001108328.1| tubulin alpha-1B chain [Bos taurus].
          Length = 451

 Score =  697 bits (1798), Expect = 0.0
 Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_001159977.1| tubulin alpha-1B chain [Bos taurus].
          Length = 451

 Score =  695 bits (1793), Expect = 0.0
 Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_001029376.1| tubulin alpha-1C chain [Bos taurus].
          Length = 449

 Score =  693 bits (1789), Expect = 0.0
 Identities = 342/379 (90%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            R+RKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_001039875.1| tubulin alpha-1D chain [Bos taurus].
          Length = 452

 Score =  693 bits (1789), Expect = 0.0
 Identities = 341/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos taurus].
          Length = 449

 Score =  690 bits (1780), Expect = 0.0
 Identities = 340/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            R+RKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY NLNRL+SQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLMSQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     +++RAVCMLS
Sbjct: 361  TVVPGGDLAKVERAVCMLS 379


>ref|XP_001254236.1| PREDICTED: tubulin alpha-1C chain-like isoform 1 [Bos taurus].
          Length = 449

 Score =  690 bits (1780), Expect = 0.0
 Identities = 340/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            R+RKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY NLNRL+SQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLMSQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     +++RAVCMLS
Sbjct: 361  TVVPGGDLAKVERAVCMLS 379


>ref|NP_001033252.1| tubulin alpha-3 chain [Bos taurus].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_002685663.1| PREDICTED: tubulin alpha-1C chain-like [Bos taurus].
          Length = 449

 Score =  688 bits (1775), Expect = 0.0
 Identities = 339/379 (89%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            R+RKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL+IERPTYTNLNRL+SQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLNIERPTYTNLNRLMSQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPR HFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRTHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++T+R IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTERTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,705,476
Number of extensions: 1644796
Number of successful extensions: 5859
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5779
Number of HSP's successfully gapped: 42
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001760
         (1263 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   698   0.0  
Alignment   gi|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   698   0.0  
Alignment   gi|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   696   0.0  
Alignment   gi|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   695   0.0  
Alignment   gi|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   695   0.0  
Alignment   gi|XP_862497.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   695   0.0  
Alignment   gi|XP_534814.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   695   0.0  
Alignment   gi|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   693   0.0  
Alignment   gi|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   689   0.0  
Alignment   gi|XP_849904.1| PREDICTED: similar to Tubulin alpha-3 chain (Al...   689   0.0  

>ref|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis
            familiaris].
          Length = 417

 Score =  698 bits (1802), Expect = 0.0
 Identities = 346/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) isoform
            2 [Canis familiaris].
          Length = 449

 Score =  698 bits (1802), Expect = 0.0
 Identities = 346/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
            familiaris].
          Length = 518

 Score =  696 bits (1795), Expect = 0.0
 Identities = 349/408 (85%), Positives = 357/408 (87%), Gaps = 17/408 (4%)
 Frame = +3

Query: 90   STPVACAC*P----------------VTTMRECISIHVGQAGVQIGNACWELYCLEHGIQ 221
            + P  CAC P                    RECISIHVGQAGVQIGNACWELYCLEHGIQ
Sbjct: 39   TAPAVCACAPGRCGPAAFKTDFYFYLFFPQRECISIHVGQAGVQIGNACWELYCLEHGIQ 98

Query: 222  PDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ 401
            PDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ
Sbjct: 99   PDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ 158

Query: 402  LITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXX 581
            LITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH            
Sbjct: 159  LITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTS 218

Query: 582  LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 761
            LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD
Sbjct: 219  LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 278

Query: 762  ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT 941
            ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT
Sbjct: 279  ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT 338

Query: 942  YAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAA 1121
            YAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYMACCLLYRGD+VPKDVNAA
Sbjct: 339  YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA 398

Query: 1122 IAPLQTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*RPWQIQRAVCMLS 1262
            IA ++TKR+IQFVDWCPTGFKV      P   P     ++QRAVCMLS
Sbjct: 399  IATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 446


>ref|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform 13 [Canis familiaris].
          Length = 451

 Score =  695 bits (1793), Expect = 0.0
 Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform 12 [Canis familiaris].
          Length = 451

 Score =  695 bits (1793), Expect = 0.0
 Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_862497.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis
            familiaris].
          Length = 419

 Score =  695 bits (1793), Expect = 0.0
 Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_534814.1| PREDICTED: similar to tubulin, alpha 1 isoform 1 [Canis familiaris].
          Length = 451

 Score =  695 bits (1793), Expect = 0.0
 Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
            familiaris].
          Length = 460

 Score =  693 bits (1789), Expect = 0.0
 Identities = 341/378 (90%), Positives = 351/378 (92%), Gaps = 1/378 (0%)
 Frame = +3

Query: 132  RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 311
            RECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 11   RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 70

Query: 312  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 491
            VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLDR
Sbjct: 71   VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDR 130

Query: 492  IRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 671
            IRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTAV
Sbjct: 131  IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 190

Query: 672  VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 851
            VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS
Sbjct: 191  VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 250

Query: 852  LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQ 1031
            LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQ
Sbjct: 251  LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ 310

Query: 1032 MVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDPH 1208
            MVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P 
Sbjct: 311  MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPT 370

Query: 1209 CGPW*RPWQIQRAVCMLS 1262
              P     ++QRAVCMLS
Sbjct: 371  VVPGGDLAKVQRAVCMLS 388


>ref|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 2 [Canis
            familiaris].
          Length = 418

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_849904.1| PREDICTED: similar to Tubulin alpha-3 chain (Alpha-tubulin 3) isoform
            1 [Canis familiaris].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,075,592
Number of extensions: 1700050
Number of successful extensions: 6592
Number of sequences better than 1.0e-05: 104
Number of HSP's gapped: 6420
Number of HSP's successfully gapped: 123
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001760
         (1263 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_116093.1| tubulin alpha-1C chain [Homo sapiens].               698   0.0  
Alignment   gi|NP_006073.2| tubulin alpha-1B chain [Homo sapiens].               697   0.0  
Alignment   gi|NP_006000.2| tubulin alpha-1A chain [Homo sapiens].               695   0.0  
Alignment   gi|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens].             689   0.0  
Alignment   gi|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens].             689   0.0  
Alignment   gi|NP_997195.1| tubulin alpha-3E chain [Homo sapiens].               685   0.0  
Alignment   gi|NP_005991.1| tubulin alpha-4A chain [Homo sapiens].               682   0.0  
Alignment   gi|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens].      633   0.0  
Alignment   gi|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapi...   534   e-152
Alignment   gi|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapien...   528   e-150

>ref|NP_116093.1| tubulin alpha-1C chain [Homo sapiens].
          Length = 449

 Score =  698 bits (1801), Expect = 0.0
 Identities = 346/379 (91%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_006073.2| tubulin alpha-1B chain [Homo sapiens].
          Length = 451

 Score =  697 bits (1798), Expect = 0.0
 Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_006000.2| tubulin alpha-1A chain [Homo sapiens].
          Length = 451

 Score =  695 bits (1793), Expect = 0.0
 Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_997195.1| tubulin alpha-3E chain [Homo sapiens].
          Length = 450

 Score =  685 bits (1767), Expect = 0.0
 Identities = 336/379 (88%), Positives = 348/379 (91%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA+NYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAASNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDY KKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYSKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_005991.1| tubulin alpha-4A chain [Homo sapiens].
          Length = 448

 Score =  682 bits (1761), Expect = 0.0
 Identities = 336/379 (88%), Positives = 347/379 (91%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1    MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKEIID VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKL+DQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens].
          Length = 449

 Score =  633 bits (1633), Expect = 0.0
 Identities = 309/379 (81%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAV +DLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD
Sbjct: 61   HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapiens].
          Length = 446

 Score =  534 bits (1375), Expect = e-152
 Identities = 253/387 (65%), Positives = 314/387 (81%), Gaps = 9/387 (2%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDG--------QMPSDKTIGGGDDSFNTF 284
            MREC+SIH+GQAG+QIG+ACWELYCLEHGIQP+G        Q+ + K +   + SF+TF
Sbjct: 1    MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAK-MEHTNASFDTF 59

Query: 285  FSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGK 464
            F ET AGKHVPRA+FVDLEPTVID +RTG +R LFHPEQL++GKEDAANNYARG Y++G 
Sbjct: 60   FCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGS 119

Query: 465  EIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIY 644
            E+IDLVL+R RKLA+QC GLQGFL+F             LLMERL+ +Y +K+KLEFS+Y
Sbjct: 120  EVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVY 179

Query: 645  PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIS 824
            PAP++STAVVEPYNS+LTTH+T EH+DC FMVDNEA+YDIC R L +E P++ ++NRL+ 
Sbjct: 180  PAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVV 239

Query: 825  QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEIT 1004
            Q+VSSITASLRF+G LNVDL EFQTNLVPYPRIHFP+  +AP++SA+KAYHEQ +V++IT
Sbjct: 240  QVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDIT 299

Query: 1005 NACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFK 1184
             ACFE +NQ+VKCDPR GKYMACCLLYRGD+VPK+VNAAIA  +++ ++QFVDWCPTGFK
Sbjct: 300  TACFESSNQLVKCDPRLGKYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFK 359

Query: 1185 VAFIT-DPHCGPW*RPWQIQRAVCMLS 1262
            V      P   P     ++ R++CMLS
Sbjct: 360  VGINNRPPTVMPGGDLAKVHRSICMLS 386


>ref|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapiens].
          Length = 383

 Score =  528 bits (1361), Expect = e-150
 Identities = 259/312 (83%), Positives = 277/312 (88%), Gaps = 1/312 (0%)
 Frame = +3

Query: 330  VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLAD 509
            +DLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRIRKL D
Sbjct: 2    IDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTD 61

Query: 510  QCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS 689
             C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVVEPYNS
Sbjct: 62   ACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNS 121

Query: 690  ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGA 869
            ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGA
Sbjct: 122  ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGA 181

Query: 870  LNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDP 1049
            LNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +QMVKCDP
Sbjct: 182  LNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDP 241

Query: 1050 RHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*R 1226
            RHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV      P   P   
Sbjct: 242  RHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGD 301

Query: 1227 PWQIQRAVCMLS 1262
              ++QRAVCMLS
Sbjct: 302  LAKVQRAVCMLS 313


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,076,163
Number of extensions: 1667923
Number of successful extensions: 5808
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 5746
Number of HSP's successfully gapped: 30
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001760
         (1263 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033474.1| tubulin alpha-1C chain [Mus musculus].               698   0.0  
Alignment   gi|NP_035784.1| tubulin alpha-1B chain [Mus musculus].               697   0.0  
Alignment   gi|NP_035783.1| tubulin alpha-1A chain [Mus musculus].               695   0.0  
Alignment   gi|NP_033475.1| tubulin alpha-3 chain [Mus musculus].                689   0.0  
Alignment   gi|NP_033472.1| tubulin alpha-3 chain [Mus musculus].                689   0.0  
Alignment   gi|NP_033473.1| tubulin alpha-4A chain [Mus musculus].               682   0.0  
Alignment   gi|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mu...   672   0.0  
Alignment   gi|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mu...   672   0.0  
Alignment   gi|NP_059075.1| tubulin alpha-8 chain [Mus musculus].                633   0.0  
Alignment   gi|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus].        531   e-151

>ref|NP_033474.1| tubulin alpha-1C chain [Mus musculus].
          Length = 449

 Score =  698 bits (1801), Expect = 0.0
 Identities = 346/379 (91%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_035784.1| tubulin alpha-1B chain [Mus musculus].
          Length = 451

 Score =  697 bits (1798), Expect = 0.0
 Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_035783.1| tubulin alpha-1A chain [Mus musculus].
          Length = 451

 Score =  695 bits (1793), Expect = 0.0
 Identities = 344/379 (90%), Positives = 350/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_033475.1| tubulin alpha-3 chain [Mus musculus].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_033472.1| tubulin alpha-3 chain [Mus musculus].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_033473.1| tubulin alpha-4A chain [Mus musculus].
          Length = 448

 Score =  682 bits (1761), Expect = 0.0
 Identities = 336/379 (88%), Positives = 347/379 (91%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1    MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKEIID VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKL+DQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mus musculus].
          Length = 450

 Score =  672 bits (1734), Expect = 0.0
 Identities = 336/379 (88%), Positives = 344/379 (90%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQ DGQMPS KTI GGDDSFNTF SETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGK 59

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 60   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 119

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
             IRKLADQC GLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 120  TIRKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 179

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLISQIVSSITA
Sbjct: 180  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITA 239

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHE L+VAEITNACFEPAN
Sbjct: 240  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPAN 299

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD++PKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 300  QMVKCDPRHGKYMACCLLYRGDVIPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 359

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 360  TVVPGGDLAKVQRAVCMLS 378


>ref|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mus musculus].
          Length = 450

 Score =  672 bits (1734), Expect = 0.0
 Identities = 336/379 (88%), Positives = 344/379 (90%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQ DGQMPS KTI GGDDSFNTF SETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGK 59

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 60   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 119

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
             IRKLADQC GLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 120  TIRKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 179

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLISQIVSSITA
Sbjct: 180  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITA 239

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHE L+VAEITNACFEPAN
Sbjct: 240  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPAN 299

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD++PKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 300  QMVKCDPRHGKYMACCLLYRGDVIPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 359

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 360  TVVPGGDLAKVQRAVCMLS 378


>ref|NP_059075.1| tubulin alpha-8 chain [Mus musculus].
          Length = 449

 Score =  633 bits (1633), Expect = 0.0
 Identities = 310/379 (81%), Positives = 331/379 (87%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD
Sbjct: 61   HVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFEP +
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus].
          Length = 446

 Score =  531 bits (1369), Expect = e-151
 Identities = 255/386 (66%), Positives = 311/386 (80%), Gaps = 8/386 (2%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK-------TIGGGDDSFNTFF 287
            MREC+SIH+GQAGVQIG+ACWELYCLEHGIQPDG +   +        +   + S +TFF
Sbjct: 1    MRECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFF 60

Query: 288  SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE 467
             ET AGKHVPR +F+DLEPTVID +R G Y  LFHPEQL+ GKEDAAN YARG Y++G E
Sbjct: 61   HETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSE 120

Query: 468  IIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYP 647
            +I+LVL+RIRKLA+QC+GLQGFL++             LLMERLSV+Y KK KLEFS+YP
Sbjct: 121  VIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYP 180

Query: 648  APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQ 827
            +P++STAVVEPYN+ILTTH+T+E+SDCAFMVDNEA+YDIC+  L IERP+Y ++NRLI+Q
Sbjct: 181  SPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIERPSYASINRLIAQ 240

Query: 828  IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITN 1007
            + SSITASLRF+G LNVDL EFQTNLVPYPRIHFP+   AP+ISAEKAY EQL+V+++T 
Sbjct: 241  VSSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTA 300

Query: 1008 ACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKV 1187
            +CFE +NQ+VKCDPR GKYMACCLLYRGD+VPKDVN AIA ++++ ++QFVDWCPTGFKV
Sbjct: 301  SCFEVSNQLVKCDPRLGKYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKV 360

Query: 1188 AF-ITDPHCGPW*RPWQIQRAVCMLS 1262
                  P   P     ++QRAVCMLS
Sbjct: 361  GINYQPPAVVPGGDLARVQRAVCMLS 386


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,543,821
Number of extensions: 1394103
Number of successful extensions: 4949
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 4884
Number of HSP's successfully gapped: 28
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001760
         (1263 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ...   697   0.0  
Alignment   gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].              697   0.0  
Alignment   gi|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrof...   693   0.0  
Alignment   gi|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa].    689   0.0  
Alignment   gi|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus s...   689   0.0  
Alignment   gi|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrof...   682   0.0  
Alignment   gi|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus s...   622   e-178
Alignment   gi|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 ...   620   e-178
Alignment   gi|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 ...   620   e-178
Alignment   gi|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus s...   554   e-158

>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
          Length = 449

 Score =  697 bits (1799), Expect = 0.0
 Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
          Length = 451

 Score =  697 bits (1798), Expect = 0.0
 Identities = 345/379 (91%), Positives = 352/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrofa].
          Length = 452

 Score =  693 bits (1789), Expect = 0.0
 Identities = 341/379 (89%), Positives = 351/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPRGDLAKVQRAVCMLS 379


>ref|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus scrofa].
          Length = 450

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/379 (89%), Positives = 349/379 (92%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKLAD CTGLQGFL+FH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACC+LYRGD+VPKDVNAAIA ++TKR IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrofa].
          Length = 448

 Score =  682 bits (1761), Expect = 0.0
 Identities = 336/379 (88%), Positives = 347/379 (91%), Gaps = 1/379 (0%)
 Frame = +3

Query: 129  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 308
            MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1    MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60

Query: 309  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 488
            HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKEIID VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120

Query: 489  RIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 668
            RIRKL+DQCTGLQGFLVFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 669  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 848
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 849  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN 1028
            SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPAN
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 1029 QMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKVAF-ITDP 1205
            QMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA ++TKR+IQFVDWCPTGFKV      P
Sbjct: 301  QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 1206 HCGPW*RPWQIQRAVCMLS 1262
               P     ++QRAVCMLS
Sbjct: 361  TVVPGGDLAKVQRAVCMLS 379


>ref|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
          Length = 413

 Score =  622 bits (1604), Expect = e-178
 Identities = 300/356 (84%), Positives = 319/356 (89%)
 Frame = +3

Query: 120  VTTMRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETG 299
            V   RECIS+HVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG
Sbjct: 48   VGPFRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETG 107

Query: 300  AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 479
             GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDL
Sbjct: 108  NGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDL 167

Query: 480  VLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQV 659
            VLDRIRKL D C+GLQGFL+FH            LLMERLS+DYGKKSKLEF+IYPAPQV
Sbjct: 168  VLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQV 227

Query: 660  STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 839
            STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS
Sbjct: 228  STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 287

Query: 840  ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 1019
            ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQL+VAEIT++CFE
Sbjct: 288  ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFE 347

Query: 1020 PANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVDWCPTGFKV 1187
            P +QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVDWCPTGFKV
Sbjct: 348  PNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKV 403


>ref|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 [Sus scrofa].
          Length = 414

 Score =  620 bits (1600), Expect = e-178
 Identities = 310/344 (90%), Positives = 317/344 (92%), Gaps = 1/344 (0%)
 Frame = +3

Query: 234  MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 413
            MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG
Sbjct: 1    MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 60

Query: 414  KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLME 593
            KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH            LLME
Sbjct: 61   KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLME 120

Query: 594  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 773
            RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR
Sbjct: 121  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 180

Query: 774  NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 953
            NLDIERPTYTNLNRL+SQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV
Sbjct: 181  NLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 240

Query: 954  ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPL 1133
            ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA +
Sbjct: 241  ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 300

Query: 1134 QTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*RPWQIQRAVCMLS 1262
            +TKR+IQFVDWCPTGFKV      P   P     ++QRAVCMLS
Sbjct: 301  KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 344


>ref|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 [Sus scrofa].
          Length = 414

 Score =  620 bits (1600), Expect = e-178
 Identities = 310/344 (90%), Positives = 317/344 (92%), Gaps = 1/344 (0%)
 Frame = +3

Query: 234  MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 413
            MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG
Sbjct: 1    MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 60

Query: 414  KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLME 593
            KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFH            LLME
Sbjct: 61   KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLME 120

Query: 594  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 773
            RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR
Sbjct: 121  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 180

Query: 774  NLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 953
            NLDIERPTYTNLNRL+SQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV
Sbjct: 181  NLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 240

Query: 954  ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPL 1133
            ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGD+VPKDVNAAIA +
Sbjct: 241  ISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATI 300

Query: 1134 QTKRNIQFVDWCPTGFKVAF-ITDPHCGPW*RPWQIQRAVCMLS 1262
            +TKR+IQFVDWCPTGFKV      P   P     ++QRAVCMLS
Sbjct: 301  KTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLS 344


>ref|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
          Length = 666

 Score =  554 bits (1427), Expect = e-158
 Identities = 268/314 (85%), Positives = 284/314 (90%)
 Frame = +3

Query: 264  DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR 443
            DDSF TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYAR
Sbjct: 270  DDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYAR 329

Query: 444  GHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSVDYGKKS 623
            GHYT+GKE IDLVLDRIRKL D C+GLQGFL+FH            LLMERLS+DYGKKS
Sbjct: 330  GHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKS 389

Query: 624  KLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 803
            KLEF+IYPAPQVSTAVVEPYNSILTTHTTLEHS+ AFMVDNEAIYDICRRNLDIERPTYT
Sbjct: 390  KLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSESAFMVDNEAIYDICRRNLDIERPTYT 449

Query: 804  NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQ 983
            NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISAEKAYHEQ
Sbjct: 450  NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQ 509

Query: 984  LTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDLVPKDVNAAIAPLQTKRNIQFVD 1163
            L+VAEIT++CFEP +QMVKCDPRHGKYMACC+LYRGD+VPKDVN AIA ++TKR IQFVD
Sbjct: 510  LSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVD 569

Query: 1164 WCPTGFKVAFITDP 1205
            WCPTGFKV     P
Sbjct: 570  WCPTGFKVGINYQP 583


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,634,181
Number of extensions: 1061173
Number of successful extensions: 3845
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 3795
Number of HSP's successfully gapped: 29
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001760
         (1263 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1332   0.0  
Sscrofa_Chr13                                                        1183   0.0  
Sscrofa_Chr03                                                         835   0.0  
Sscrofa_Chr11                                                         739   0.0  
Sscrofa_Chr15                                                         511   e-142
Sscrofa_Chr14                                                         436   e-119
gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891      424   e-116
gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   278   7e-72
Sscrofa_Chr10                                                          66   5e-08

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1332 bits (672), Expect = 0.0
 Identities = 744/764 (97%), Gaps = 3/764 (0%)
 Strand = Plus / Plus

                                                                            
Query: 503      ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675141 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15675200

                                                                            
Query: 563      gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675201 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15675260

                                                                            
Query: 623      caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675261 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15675320

                                                                            
Query: 683      caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675321 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15675380

                                                                            
Query: 743      caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675381 caatgaggccatctacgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 15675440

                                                                            
Query: 803      taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
                ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675441 taatctgaaccgcctcatgagccaaattgtgtcctccatcactgcttccctgaggtttga 15675500

                                                                            
Query: 863      tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675501 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 15675560

                                                                            
Query: 923      ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
                |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 15675561 ccatttccctctggccacatacgcccccgtcatctctgctgagaaagcctaccatgaaca 15675620

                                                                            
Query: 983      gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15675621 gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 15675680

                                                                            
Query: 1043     tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15675681 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggttcc 15675740

                                                                            
Query: 1103     caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
                ||||||||||||||||||||| ||| || || | |||||||||| |||||||||||||||
Sbjct: 15675741 caaagacgtcaatgccgccatcgccaccatcaagaccaagcgcagcatccagtttgtgga 15675800

                                                                            
Query: 1163     ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggtccctgg 1220
                ||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||
Sbjct: 15675801 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtccctgg 15675860

                                                            
Query: 1221     tgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
                || |||||  | |||| |||||||||||||||||||||||||||
Sbjct: 15675861 tggagacctggccaaagtacagcgggcagtgtgcatgctgagca 15675904



 Score = 1324 bits (668), Expect = 0.0
 Identities = 743/764 (97%), Gaps = 3/764 (0%)
 Strand = Plus / Minus

                                                                            
Query: 503      ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557777 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15557718

                                                                            
Query: 563      gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557717 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15557658

                                                                            
Query: 623      caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557657 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15557598

                                                                            
Query: 683      caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557597 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15557538

                                                                            
Query: 743      caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15557537 caatgaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacac 15557478

                                                                            
Query: 803      taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557477 taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 15557418

                                                                            
Query: 863      tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557417 tggggccctgaacgttgatctgacagaattccagaccaacctggtgccctacccccgcat 15557358

                                                                            
Query: 923      ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
                ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 15557357 ccatttccctctggccacatacgcccctgtcatctctgctgagaaagcctaccatgaaca 15557298

                                                                            
Query: 983      gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15557297 gctttctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 15557238

                                                                            
Query: 1043     tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15557237 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggttcc 15557178

                                                                            
Query: 1103     caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
                ||||||||||||||| ||||||||| || || | |||||||||| |||||||||||||||
Sbjct: 15557177 caaagacgtcaatgctgccattgccaccatcaagaccaagcgcagcatccagtttgtgga 15557118

                                                                            
Query: 1163     ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggtccctgg 1220
                ||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||
Sbjct: 15557117 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtccctgg 15557058

                                                            
Query: 1221     tgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
                || |||||  | |||| |||||||||||||||||||||||||||
Sbjct: 15557057 tggagacctggccaaagtacagcgggcagtgtgcatgctgagca 15557014



 Score = 1213 bits (612), Expect = 0.0
 Identities = 729/764 (95%), Gaps = 3/764 (0%)
 Strand = Plus / Minus

                                                                            
Query: 503      ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593636 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15593577

                                                                            
Query: 563      gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593576 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15593517

                                                                            
Query: 623      caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593516 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15593457

                                                                            
Query: 683      caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593456 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15593397

                                                                            
Query: 743      caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15593396 caatgaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacac 15593337

                                                                            
Query: 803      taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
                ||| |||||  |  | ||  | || |||||||||||||||||||||||||||||||||||
Sbjct: 15593336 taacctgaataggttgataggtcagattgtgtcctccatcactgcttccctgaggtttga 15593277

                                                                            
Query: 863      tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 15593276 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctatccccgcat 15593217

                                                                            
Query: 923      ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
                ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct: 15593216 ccatttccctctggccacatatgcccctgtcatctctgctgagaaagcctaccatgaaca 15593157

                                                                            
Query: 983      gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
                |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 15593156 gctttctgtagcagagatcaccaatgcttgctttgagccagccaaccagatggtgaaatg 15593097

                                                                            
Query: 1043     tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 15593096 tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacgtggttcc 15593037

                                                                            
Query: 1103     caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
                ||||||||||||||||||||| ||| || || | |||||||| | |||||||||||||||
Sbjct: 15593036 caaagacgtcaatgccgccatcgccaccatcaagaccaagcgtaccatccagtttgtgga 15592977

                                                                            
Query: 1163     ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggtccctgg 1220
                ||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||| ||
Sbjct: 15592976 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtccccgg 15592917

                                                            
Query: 1221     tgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
                || |||||  | |||| |||||||||||||||||||||||||||
Sbjct: 15592916 tggagacctggccaaagtacagcgggcagtgtgcatgctgagca 15592873



 Score =  444 bits (224), Expect = e-122
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                            
Query: 131      gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558559 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15558500

                                                                            
Query: 191      ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558499 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15558440

                                                                            
Query: 251      cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558439 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 15558380

                                                            
Query: 311      tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 354
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558379 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 15558336



 Score =  444 bits (224), Expect = e-122
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                            
Query: 131      gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594415 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15594356

                                                                            
Query: 191      ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594355 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15594296

                                                                            
Query: 251      cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594295 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 15594236

                                                            
Query: 311      tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 354
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594235 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 15594192



 Score =  440 bits (222), Expect = e-121
 Identities = 552/662 (83%)
 Strand = Plus / Plus

                                                                            
Query: 525      cagggcttcttggttttccacagctttggcgggggaacgggttctgggttcacctccctg 584
                ||||||||| || | |||||||| ||||| ||||| || || ||||| ||||| || |||
Sbjct: 72522876 cagggcttcctgatcttccacagttttggggggggcaccggctctggcttcacttctctg 72522935

                                                                            
Query: 585      ctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccatttac 644
                ||||||||||| |||||  | ||||| ||||||||||||||||| |||||  |||| |||
Sbjct: 72522936 ctgatggaacgcctctccctggattacggcaagaagtccaagctagagtttgccatctac 72522995

                                                                            
Query: 645      ccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccacccac 704
                || || |||||||| ||||| || || || || ||||||||||||||||| |||||||||
Sbjct: 72522996 ccggcaccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacccac 72523055

                                                                            
Query: 705      accaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatgacatc 764
                ||||||||||| || || || |||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 72523056 accaccctggaacattcagactgtgccttcatggtggacaacgaggccatctacgacatc 72523115

                                                                            
Query: 765      tgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttattagc 824
                || || || ||||| || || || ||||| |||||||| || || |||||||| || |||
Sbjct: 72523116 tgccgcaggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatcagc 72523175

                                                                            
Query: 825      caaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttgatctg 884
                || || |||||||||||||| || |||||| | |||||||||||||| || || || |||
Sbjct: 72523176 cagatcgtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggacctg 72523235

                                                                            
Query: 885      acagaattccagaccaacctggtgccctacccccgcatccatttccctctggccacatac 944
                || || ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||
Sbjct: 72523236 accgagttccagaccaacctggtgccctacccccgcatccacttccccctggtcacctac 72523295

                                                                            
Query: 945      gcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagatcact 1004
                || ||| ||||||||||||| || |||||||| || |||||  |||| || |||||||| 
Sbjct: 72523296 gcacccatcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatcacc 72523355

                                                                            
Query: 1005     aatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaaatac 1064
                |   | |||||||||||   || |||||||||||| ||||| || || ||||| || |||
Sbjct: 72523356 agctcctgctttgagcccaacagccagatggtgaagtgtgatccccgtcatggcaagtac 72523415

                                                                            
Query: 1065     atggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgccatt 1124
                |||||||||||| || | ||||| || ||| |||| ||||| |||||||| | |||||||
Sbjct: 72523416 atggcctgctgcatgctctaccggggggacgtggtgcccaaggacgtcaacgtcgccatt 72523475

                                                                            
Query: 1125     gcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggcttcaag 1184
                ||| || || | |||||| | | |||||||||||| |||||||| ||||| |||||||||
Sbjct: 72523476 gccgccatcaagaccaagaggaccatccagtttgtagactggtgtcccacaggcttcaag 72523535

                  
Query: 1185     gt 1186
                ||
Sbjct: 72523536 gt 72523537



 Score =  436 bits (220), Expect = e-119
 Identities = 223/224 (99%)
 Strand = Plus / Plus

                                                                            
Query: 131      gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672306 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15672365

                                                                            
Query: 191      ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672366 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15672425

                                                                            
Query: 251      cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
                |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 15672426 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggagctggcaagca 15672485

                                                            
Query: 311      tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 354
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672486 tgtgcccagggcagtgtttgtagacctggaacccacagtcattg 15672529



 Score =  414 bits (209), Expect = e-113
 Identities = 359/405 (88%), Gaps = 18/405 (4%)
 Strand = Plus / Minus

                                                                            
Query: 863      tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 23375374 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23375315

                                                                            
Query: 923      ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
                ||||||| ||||||||||||||||||| |      ||| |        |||||| |||| 
Sbjct: 23375314 ccatttctctctggccacatacgcccctg------ctgtt--------ctaccaggaacg 23375269

                                                                            
Query: 983      gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23375268 gctttctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 23375209

                                                                            
Query: 1043     tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
                 ||||||| ||||||||||||||||||||| ||||| ||||||| ||||||| |||||||
Sbjct: 23375208 cgaccctcaccatggtaaatacatggcctgatgcctattgtaccatggtgacgtggttcc 23375149

                                                                            
Query: 1103     caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
                ||||||| ||||||||||||||||| || || | |||||||||| |||||||||||||||
Sbjct: 23375148 caaagacatcaatgccgccattgccaccatcaagaccaagcgcagcatccagtttgtgga 23375089

                                                                            
Query: 1163     ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggt-ccctg 1219
                ||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||  ||||
Sbjct: 23375088 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtggcctg 23375029

                                                             
Query: 1220     gtgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
                  | |||||  | |||| |||||||||||||||||||||||||||
Sbjct: 23375028 acggagacctggccaaagtacagcgggcagtgtgcatgctgagca 23374984



 Score =  414 bits (209), Expect = e-113
 Identities = 359/405 (88%), Gaps = 18/405 (4%)
 Strand = Plus / Minus

                                                                            
Query: 863      tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 23553189 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23553130

                                                                            
Query: 923      ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
                ||||||| ||||||||||||||||||| |      ||| |        |||||| |||| 
Sbjct: 23553129 ccatttctctctggccacatacgcccctg------ctgtt--------ctaccaggaacg 23553084

                                                                            
Query: 983      gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
                |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23553083 gctttctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 23553024

                                                                            
Query: 1043     tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
                 ||||||| ||||||||||||||||||||| ||||| ||||||| ||||||| |||||||
Sbjct: 23553023 cgaccctcaccatggtaaatacatggcctgatgcctattgtaccatggtgacgtggttcc 23552964

                                                                            
Query: 1103     caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
                ||||||| ||||||||||||||||| || || | |||||||||| |||||||||||||||
Sbjct: 23552963 caaagacatcaatgccgccattgccaccatcaagaccaagcgcagcatccagtttgtgga 23552904

                                                                            
Query: 1163     ctggtgccccactggcttcaagg-tggcatttatta-cagacccccactgtggt-ccctg 1219
                ||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||  ||||
Sbjct: 23552903 ctggtgccccactggcttcaaggttggcattaattaccagccccccactgtggtggcctg 23552844

                                                             
Query: 1220     gtgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
                  | |||||  | |||| |||||||||||||||||||||||||||
Sbjct: 23552843 acggagacctggccaaagtacagcgggcagtgtgcatgctgagca 23552799



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                            
Query: 354      gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558187 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15558128

                                                                            
Query: 414      aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558127 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15558068

                                               
Query: 474      gacctcgtcttggaccgaattcggaaactgg 504
                |||||||||||||||||||||||||||||||
Sbjct: 15558067 gacctcgtcttggaccgaattcggaaactgg 15558037



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                            
Query: 354      gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15594043 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15593984

                                                                            
Query: 414      aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15593983 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15593924

                                               
Query: 474      gacctcgtcttggaccgaattcggaaactgg 504
                |||||||||||||||||||||||||||||||
Sbjct: 15593923 gacctcgtcttggaccgaattcggaaactgg 15593893



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                            
Query: 354      gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672678 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15672737

                                                                            
Query: 414      aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15672738 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15672797

                                               
Query: 474      gacctcgtcttggaccgaattcggaaactgg 504
                |||||||||||||||||||||||||||||||
Sbjct: 15672798 gacctcgtcttggaccgaattcggaaactgg 15672828



 Score =  194 bits (98), Expect = 8e-47
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                            
Query: 34       agtgcgttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtcta 93
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15559999 agtgcgttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtcta 15559940

                                                      
Query: 94       ctcctgttgcctgcgcttgctgaccggtaaccaccatg 131
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 15559939 ctcctgttgcctgcgcttgctgaccggtaaccaccatg 15559902



 Score =  103 bits (52), Expect = 2e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                            
Query: 138      tgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctc 197
                ||||| ||| ||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct: 72519106 tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 72519165

                                        
Query: 198      tactgcctggaacacggcatccag 221
                | ||||||||| ||||||||||||
Sbjct: 72519166 ttctgcctggagcacggcatccag 72519189



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 84/97 (86%)
 Strand = Plus / Plus

                                                                            
Query: 372      acctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgccaat 431
                |||||||||||||||||||| || |||||||| |||||||| || || ||||| ||||| 
Sbjct: 72520765 acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 72520824

                                                     
Query: 432      aactatgcccgaggtcactacaccattggcaaggaga 468
                ||||||||||| || ||||||||  | ||||||||||
Sbjct: 72520825 aactatgcccggggccactacacagtgggcaaggaga 72520861


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 1183 bits (597), Expect = 0.0
 Identities = 1071/1227 (87%), Gaps = 44/1227 (3%)
 Strand = Plus / Minus

                                                                             
Query: 43        ctcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtctactcctgttg 102
                 ||||||| ||||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct: 106118504 ctcaccttgactcttagcttgtcagtgatggtaaccaggactcagtgtctactcctgttg 106118445

                                                                             
Query: 103       cctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccacgttggccaag 162
                 ||||| ||||||||| || | |||   || ||||||||||||| |||||| |||||||||
Sbjct: 106118444 cctgcacttgctgactggcagccatggtgtgtgagtgcatctctatccacattggccaag 106118385

                                                                             
Query: 163       ctggtgtccagatcggcaatgcctgctgggagctctactgcctggaacacggcatccagc 222
                 |||||||||||||| ||| ||||||||||||||| ||||||||||||||           
Sbjct: 106118384 ctggtgtccagatcagcagtgcctgctgggagctatactgcctggaaca----------- 106118336

                                                                             
Query: 223       ccgatggccagatgccgagtgacaagaccattgggggaggagatgactccttcaacacct 282
                           ||| || ||| ||||||||  |||||||||||||||||||||||||||||
Sbjct: 106118335 ----------gataccaagtaacaagacccctgggggaggagatgactccttcaacacct 106118286

                                                                             
Query: 283       tcttca-gtgagacaggcgctggcaagcatgtgcccagggcagtgtttgtagacctggaa 341
                 |||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 106118285 tctttaagtgagataggagctggcaagcatgtgcccagggcag-gtttgtagacctggaa 106118227

                                                                             
Query: 342       cccacagtcattgatgaagttcgcactggcacctaccgccagctcttccaccctgagcag 401
                 ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 106118226 cccacagtcattgatgaagttagcactggcacctactgcctgctcttccaccctgagcag 106118167

                                                                             
Query: 402       ctcatcacaggcaaggaagatgctgccaataactatgcccgaggtcactacaccattggc 461
                 ||||||||||||||  |||||||||||||||||||| || || |||||||  ||||||||
Sbjct: 106118166 ctcatcacaggcaaaaaagatgctgccaataactattccagaagtcactatcccattggc 106118107

                                                                             
Query: 462       aaggagatcattgacctcgtcttggaccgaattcggaaactggctgaccagtgcacaggt 521
                 |||||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||||||
Sbjct: 106118106 aaggagatcattgacctcatcttggacccagttcagaa-ctggctgaccagtgcacaggt 106118048

                                                                             
Query: 522       cttcagggcttcttggttttccacagctttggcgggggaa-cgggttctgggttcacctc 580
                 ||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||||
Sbjct: 106118047 cttcagggcttcttggttttccacagctttggttggggaaactggttctgggttcacctc 106117988

                                                                             
Query: 581       cctgctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccat 640
                  ||||||||||||||| |||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 106117987 tctgctgatggaacgtttctctgtcgattatgggaataagtccaagctggaattctccat 106117928

                                                                             
Query: 641       ttacccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccac 700
                 |||  |||||||| |||||||||||||||||| |||||| ||||  |||||||| |||||
Sbjct: 106117927 ttattcagccccctaggtttccacagctgtaggtgagccttacatttccatccttaccac 106117868

                                                                             
Query: 701       ccacaccaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatga 760
                 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106117867 ccacaccaccgtggagaactctgattgtgccttcatggtagacaatgaggccatctatga 106117808

                                                                             
Query: 761       catctgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttat 820
                 ||||| || |||||||||||||||||| | |||| ||||||||| |||||||| ||| ||
Sbjct: 106117807 catctttcatagaaaccttgatattgagcacccatcctacactactctgaaccacctcat 106117748

                                                                             
Query: 821       tagccaaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttga 880
                 |||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct: 106117747 tagccagattgtgtcctccatcactgcttctctgaggtttgatggagccatgaatgttga 106117688

                                                                             
Query: 881       tctgacagaattccagaccaacctggtgccctacccccgcatccatttccctctggccac 940
                 |||||||||||||||||||| | || |||||||| || ||||||||||||||||||||||
Sbjct: 106117687 tctgacagaattccagaccagcttgttgccctactcctgcatccatttccctctggccac 106117628

                                                                             
Query: 941       atacgcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagat 1000
                 ||| ||||| |||||||||||||| |||| |              |||||||||||||||
Sbjct: 106117627 atatgcccctgtcatctctgctgagaaagtc--------------tactgtagcagagat 106117582

                                                                             
Query: 1001      cactaatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaa 1060
                 ||| ||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 106117581 caccaatgcttgctttaggccagccaaccagatggtgaaatttgatcctcgccatggtaa 106117522

                                                                             
Query: 1061      atacatggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgc 1120
                 |||||||||||||||||||||||||||||| | |  ||||||| |||| ||||||||| |
Sbjct: 106117521 atacatggcctgctgcctgttgtaccgtggcgtcacggttcccgaagaagtcaatgccac 106117462

                                                                             
Query: 1121      cattgcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggctt 1180
                 ||||||| || |  | ||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 106117461 cattgccaccataaagaccaagcacagcattcagtttgtggactggtgccccaatggctt 106117402

                                                                             
Query: 1181      -caaggtggcatttatta-cagacccccactgtggtccctggtgaagaccctggcaaa-- 1236
                   ||| ||||||| || | ||| | ||||||||||||||| ||| |||  ||||||||  
Sbjct: 106117401 aaaagctggcattgataaccagccacccactgtggtcccttgtggaga-tctggcaaaag 106117343

                                            
Query: 1237      tacagcgggcagtgtgcatgctgagca 1263
                 ||||| |||| |||||| |||||||||
Sbjct: 106117342 tacagagggctgtgtgcgtgctgagca 106117316



 Score = 1176 bits (593), Expect = 0.0
 Identities = 1070/1227 (87%), Gaps = 44/1227 (3%)
 Strand = Plus / Minus

                                                                             
Query: 43        ctcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtctactcctgttg 102
                 ||||||| ||||||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct: 105966938 ctcaccttgactcttagcttgtcagtgatggtaaccaggactcagtgtctactcctgttg 105966879

                                                                             
Query: 103       cctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccacgttggccaag 162
                 ||||| ||||||||| || | |||   || ||||||||||||| |||||| |||||||||
Sbjct: 105966878 cctgcacttgctgactggcagccatggtgtgtgagtgcatctctatccacattggccaag 105966819

                                                                             
Query: 163       ctggtgtccagatcggcaatgcctgctgggagctctactgcctggaacacggcatccagc 222
                 |||||||||||||| ||| ||||||||||||||| ||||||||||||||           
Sbjct: 105966818 ctggtgtccagatcagcagtgcctgctgggagctatactgcctggaaca----------- 105966770

                                                                             
Query: 223       ccgatggccagatgccgagtgacaagaccattgggggaggagatgactccttcaacacct 282
                           ||| || ||| ||||||||  |||||||||||||||||||||||||||||
Sbjct: 105966769 ----------gataccaagtaacaagacccctgggggaggagatgactccttcaacacct 105966720

                                                                             
Query: 283       tcttca-gtgagacaggcgctggcaagcatgtgcccagggcagtgtttgtagacctggaa 341
                 |||| | |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 105966719 tctttaagtgagataggagctggcaagcatgtgcccagggcag-gtttgtagacctggaa 105966661

                                                                             
Query: 342       cccacagtcattgatgaagttcgcactggcacctaccgccagctcttccaccctgagcag 401
                 ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 105966660 cccacagtcattgatgaagttagcactggcacctactgcctgctcttccaccctgagcag 105966601

                                                                             
Query: 402       ctcatcacaggcaaggaagatgctgccaataactatgcccgaggtcactacaccattggc 461
                 ||||||||||||||  |||||||||||||||||||| || || |||||||  ||||||||
Sbjct: 105966600 ctcatcacaggcaaaaaagatgctgccaataactattccagaagtcactatcccattggc 105966541

                                                                             
Query: 462       aaggagatcattgacctcgtcttggaccgaattcggaaactggctgaccagtgcacaggt 521
                 |||||||||||||||||| ||||||||| | ||| ||| |||||||||||||||||||||
Sbjct: 105966540 aaggagatcattgacctcatcttggacccagttcagaa-ctggctgaccagtgcacaggt 105966482

                                                                             
Query: 522       cttcagggcttcttggttttccacagctttggcgggggaa-cgggttctgggttcacctc 580
                 ||||||||||||||||||||||||||||||||  |||||| | |||||||||||||||||
Sbjct: 105966481 cttcagggcttcttggttttccacagctttggttggggaaactggttctgggttcacctc 105966422

                                                                             
Query: 581       cctgctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccat 640
                  ||||||||||||||| |||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 105966421 tctgctgatggaacgtttctctgtcgattatgggaataagtccaagctggaattctccat 105966362

                                                                             
Query: 641       ttacccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccac 700
                 |||  |||||||| |||||||||||||||||| |||||| ||||  |||||||| |||||
Sbjct: 105966361 ttattcagccccctaggtttccacagctgtaggtgagccttacatttccatccttaccac 105966302

                                                                             
Query: 701       ccacaccaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatga 760
                 |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105966301 ccacaccaccgtggagaactctgattgtgccttcatggtagacaatgaggccatctatga 105966242

                                                                             
Query: 761       catctgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttat 820
                 ||||| || |||||||||||||||||| | |||| ||||||||| |||||||| ||| ||
Sbjct: 105966241 catctttcatagaaaccttgatattgagcacccatcctacactactctgaaccacctcat 105966182

                                                                             
Query: 821       tagccaaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttga 880
                 |||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct: 105966181 tagccagattgtgtcctccatcactgcttctctgaggtttgatggagccatgaatgttga 105966122

                                                                             
Query: 881       tctgacagaattccagaccaacctggtgccctacccccgcatccatttccctctggccac 940
                 |||||||||||||||||||| | || |||||||| || ||||||||||||||||||||||
Sbjct: 105966121 tctgacagaattccagaccagcttgttgccctactcctgcatccatttccctctggccac 105966062

                                                                             
Query: 941       atacgcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagat 1000
                 ||| ||||| |||||||||||||| |||| |              |||||||||||||||
Sbjct: 105966061 atatgcccctgtcatctctgctgagaaagtc--------------tactgtagcagagat 105966016

                                                                             
Query: 1001      cactaatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaa 1060
                 | | ||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 105966015 ccccaatgcttgctttaggccagccaaccagatggtgaaatttgatcctcgccatggtaa 105965956

                                                                             
Query: 1061      atacatggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgc 1120
                 |||||||||||||||||||||||||||||| | |  ||||||| |||| ||||||||| |
Sbjct: 105965955 atacatggcctgctgcctgttgtaccgtggcgtcacggttcccgaagaagtcaatgccac 105965896

                                                                             
Query: 1121      cattgcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggctt 1180
                 ||||||| || |  | ||||||| || ||| |||||||||||||||||||||| ||||||
Sbjct: 105965895 cattgccaccataaagaccaagcacagcattcagtttgtggactggtgccccaatggctt 105965836

                                                                             
Query: 1181      -caaggtggcatttatta-cagacccccactgtggtccctggtgaagaccctggcaaa-- 1236
                   ||| ||||||| || | ||| | ||||||||||||||| ||| |||  ||||||||  
Sbjct: 105965835 aaaagctggcattgataaccagccacccactgtggtcccttgtggaga-tctggcaaaag 105965777

                                            
Query: 1237      tacagcgggcagtgtgcatgctgagca 1263
                 ||||| |||| |||||| |||||||||
Sbjct: 105965776 tacagagggctgtgtgcgtgctgagca 105965750


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  835 bits (421), Expect = 0.0
 Identities = 800/922 (86%), Gaps = 17/922 (1%)
 Strand = Plus / Plus

                                                                            
Query: 128      catgcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctg 187
                ||||| |||||||||| |||||||||||||||| ||| ||||||||||| ||| ||||||
Sbjct: 49835567 catgcttgagtgcatccccatccacgttggccaggctagtgtccagatcagcagtgcctg 49835626

                                                                            
Query: 188      ctgggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaa 247
                 |||||| ||| ||||||||||||| |||||||||  ||| |||||||||| ||||||||
Sbjct: 49835627 ttgggagttctcctgcctggaacacagcatccagcgtgatagccagatgccaagtgacaa 49835686

                                                                            
Query: 248      gaccattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaa 307
                | |||||||   ||||||||||||||||| ||||||||| ||||         |||||||
Sbjct: 49835687 gtccattgg---aggagatgactccttcagcaccttcttgagtg---------ctggcaa 49835734

                                                                            
Query: 308      gcatgtgcccagggcagtgtttgtagacctggaacccacagtcattgatgaagttcgcac 367
                 |  ||||||||||||||||| ||  ||||||||||| || |||||||||| ||| ||||
Sbjct: 49835735 ac--gtgcccagggcagtgttagtcaacctggaaccctcaatcattgatgacgtttgcac 49835792

                                                                            
Query: 368      tggcacctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgc 427
                |||||||||| |||||||| |||||| |||||| |||||||||||||||||||||| | |
Sbjct: 49835793 tggcacctac-gccagctcctccaccgtgagcatctcatcacaggcaaggaagatggtac 49835851

                                                                            
Query: 428      caataactatgcccgaggtcactacaccattggcaaggagatcattgacctcgtcttgga 487
                | ||||| | ||||  |||||| |||||||||| |  |||||||||||||  ||||||||
Sbjct: 49835852 cgataaccacgccccgggtcaccacaccattggtactgagatcattgaccgtgtcttgga 49835911

                                                                            
Query: 488      ccgaattcggaaactggctgaccagtgcacaggtcttcagggcttcttggttttccacag 547
                || | |   ||| |||||||||  ||||||| | || |||||||||||||||||||||||
Sbjct: 49835912 cccagtgtagaagctggctgactggtgcacatgcctccagggcttcttggttttccacag 49835971

                                                                            
Query: 548      ctttggcgggggaacgggttctgggttcacctccctgctgatggaacgtctctctgtcga 607
                || ||| |||||||| | |||||||||||||| |||||| |||| |||||||||||||||
Sbjct: 49835972 ctctggtgggggaactgattctgggttcaccttcctgcttatgggacgtctctctgtcga 49836031

                                                                            
Query: 608      ttatggcaagaagtccaagctggagttctccatttacccagccccccaggtttccacagc 667
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct: 49836032 ttatggcaagaagtccaagctggaggtctccatttacccagccccccaggtttgcactgc 49836091

                                                                            
Query: 668      tgtagttgagccctacaactccatcctcaccacccacaccaccctggagcactctgattg 727
                |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 49836092 tgtagttgagccctacaactccatcctctccacccacaccacccaggagcactctgattg 49836151

                                                                            
Query: 728      tgccttcatggtagacaatgaggccatctatgacatctgtcgtagaaaccttgatattga 787
                |||||||||||||| | |  || ||||||||||||||||| ||||||| |  ||||||||
Sbjct: 49836152 tgccttcatggtaggccacaagtccatctatgacatctgtggtagaaaacacgatattga 49836211

                                                                            
Query: 788      acgcccaacctacactaatctgaaccgccttattagccaaattgtgtcctccatcactgc 847
                 |||||||||||||||  |||||||| | | ||||| |  ||||||||||||||||||||
Sbjct: 49836212 gcgcccaacctacactcctctgaacctcgtcattag-ctgattgtgtcctccatcactgc 49836270

                                                                            
Query: 848      ttccctgaggtttgatggggccctgaatgttgatctgacagaattccagaccaacctggt 907
                ||||||| |||| | ||| |||||||| |||||||||||||||| |||||||| | || |
Sbjct: 49836271 ttccctggggttgggtggagccctgaacgttgatctgacagaatgccagaccaccttgat 49836330

                                                                            
Query: 908      gccctacccccgcatccatttccctctggccacatacgcccccgtcatctctgctgaaaa 967
                |||||  | | ||||||||||||||||  |||| || | ||| |||||||||||||| ||
Sbjct: 49836331 gccctgtcgctgcatccatttccctctttccactta-ggccctgtcatctctgctgagaa 49836389

                                                                            
Query: 968      agcctaccatgaacagcttactgtagcagagatcactaatgcttgctttgagccagccaa 1027
                ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 49836390 agcctaccatgaacagctttctgtagcagagatcactaatgcttggttagagccagccaa 49836449

                                      
Query: 1028     ccagatggtgaaatgtgaccct 1049
                |||||||||||| | |||||||
Sbjct: 49836450 ccagatggtgaagtatgaccct 49836471



 Score =  769 bits (388), Expect = 0.0
 Identities = 589/648 (90%), Gaps = 6/648 (0%)
 Strand = Plus / Plus

                                                                             
Query: 621       tccaagctggagttctccatttacccagcccc-ccaggtttccacagctgtagttgagcc 679
                 |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 132554009 tccaagctggagctctccatttacccagcccctccaggtttccacagctgtagttgagcc 132554068

                                                                             
Query: 680       ctacaactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggt 739
                 |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 132554069 ctacaactccatcctcaccacccacaccaccctggagcactcaggttgtgccttcatggt 132554128

                                                                             
Query: 740       agacaatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaaccta 799
                 || ||| |||||| ||| ||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 132554129 aggcaacgaggccgtctctgacacctgtcgtagaaacctcgatattgagcgcccaacctg 132554188

                                                                             
Query: 800       cactaatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtt 859
                 |||||||| |||||| ||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct: 132554189 cactaatccgaaccgtcttatcagccagattgtgtcctccatcgctgcttccctgaggtt 132554248

                                                                             
Query: 860       tgatggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccg 919
                 |||||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 132554249 tgatggggctttgaatgtggatctcacagaattccagaccaacctggtgccctacccccg 132554308

                                                                             
Query: 920       catccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatga 979
                 |||||| ||||||||||||||| | ||||| ||||||||||||| | |||||||||| ||
Sbjct: 132554309 catccacttccctctggccacacatgcccctgtcatctctgctg-agaagcctaccagga 132554367

                                                                             
Query: 980       acagcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaa 1039
                 ||||||| ||||||||||| || |||||||| ||||  | ||||||||||||||||||||
Sbjct: 132554368 acagctttctgtagcagaggtcgctaatgctggcttcaaaccagccaaccagatggtgaa 132554427

                                                                             
Query: 1040      atgtgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggt 1099
                 |||  |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||
Sbjct: 132554428 atgcaaccctcgccatggtaaatccatggcctgctgcctgttgtaccatggtgacgtggt 132554487

                                                                             
Query: 1100      tcccaaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgt 1159
                 |||||||||||||||||||||||| ||| || || | |||||||||| ||||||||||||
Sbjct: 132554488 tcccaaagacgtcaatgccgccatcgccaccatcaagaccaagcgcagcatccagtttgt 132554547

                                                                             
Query: 1160      ggactggtgccccactggcttcaagg-tggcatttatta-cag-acccccactgtggtcc 1216
                 |||||||||||||||||||||||||| ||||||| |||| |||  |||||||||||||| 
Sbjct: 132554548 ggactggtgccccactggcttcaaggttggcattaattaccagcccccccactgtggtct 132554607

                                                                 
Query: 1217      ctggtgaagaccctggcaaa-tacagcgggcagtgtgcatgctgagca 1263
                 |||| | |||||  | |||| |||||||||| ||||||||||||||||
Sbjct: 132554608 ctggcggagacctggccaaagtacagcgggctgtgtgcatgctgagca 132554655



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1148     catccagtttgtggactggtgccccactggcttcaaggtggcatttatta-cagaccccc 1206
                |||||||||||||||||||| |||  |||||||||||  |||||| |||| |||   |||
Sbjct: 49836878 catccagtttgtggactggtaccctgctggcttcaagtcggcattaattaccagcttccc 49836937

                                      
Query: 1207     actgtggtccctggtgaagacc 1228
                |||||||||||||||| |||||
Sbjct: 49836938 actgtggtccctggtggagacc 49836959


>Sscrofa_Chr11 
||          Length = 87690581

 Score =  739 bits (373), Expect = 0.0
 Identities = 1007/1195 (84%), Gaps = 45/1195 (3%)
 Strand = Plus / Plus

                                                                            
Query: 33       gagtgcgttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtct 92
                |||||| ||||||||||| |||||||||||||| | || | ||||||||||| ||| |||
Sbjct: 32577490 gagtgccttactcacctcaactcttagcttgtcagcgatgataaccaggacttggtatct 32577549

                                                                            
Query: 93       actcctgttgcctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccac 152
                 |||||| ||||  |||||||||| | ||| |||||||| |||  |||||||||||||||
Sbjct: 32577550 gctcctgctgccctcgcttgctgatcagtagccaccatgtgtg--tgcatctccatccac 32577607

                                                                            
Query: 153      gttggccaagctggtgtcca-gatcggcaatgcctgctgggagctctactgcctggaaca 211
                 |||||||   ||||| ||| ||  | |||||| | |||||| |||||| ||||  ||  
Sbjct: 32577608 attggccacattggtgcccacgactgacaatgcatcctgggaactctaccgccttcaat- 32577666

                                                                            
Query: 212      cggcatccagcccgatggccagatgccgagtgacaagaccattgggggaggagatgactc 271
                 |||           |||||||||||| |||||||||||||||| |||| ||||||||||
Sbjct: 32577667 -ggc-----------tggccagatgccaagtgacaagaccattgagggaagagatgactc 32577714

                                                                            
Query: 272      cttcaacaccttcttcagtgaga-caggcg-ctggcaagcatgtgcccagggcagtgttt 329
                |||||| ||||| |||||||||| |||||  ||| | ||||||| |||||||||||||||
Sbjct: 32577715 cttcaatacctttttcagtgagaacaggcaactgaccagcatgtacccagggcagtgttt 32577774

                                                                            
Query: 330      gtagacctggaacccacagtcattgatgaagttcgcact--ggcacctaccgccagctct 387
                ||||| ||| |||||| | ||||||||||||||| ||||  |||||||||  ||||||||
Sbjct: 32577775 gtagatctgaaacccagaatcattgatgaagttcacactttggcacctactcccagctct 32577834

                                                                            
Query: 388      tccaccctgagcagctcatcacaggcaaggaagatgctgccaataactatgcccgaggtc 447
                ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 32577835 tccaccctgagcagctcatcacaggcaaggaagatgctgtcaataactatgcctgaggtc 32577894

                                                                            
Query: 448      actacaccattggcaaggagatcattgacctcgtcttggaccgaattcggaaactggctg 507
                ||| |||||||||||||||||||||||| || || |||||| ||||| ||||||||||||
Sbjct: 32577895 acttcaccattggcaaggagatcattgatcttgtgttggactgaattgggaaactggctg 32577954

                                                                            
Query: 508      accagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgggtt 567
                || |||||| |||||||||| | ||||||| |||| |||||||  | |||| ||| ||| 
Sbjct: 32577955 acaagtgcataggtcttcagtgtttcttggctttc-acagctt--gtggggaaactggt- 32578010

                                                                            
Query: 568      ctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaagc 627
                ||||||| |||||||||| |||| ||| ||||| |||| |||| ||||| || |||| ||
Sbjct: 32578011 ctgggtttacctccctgcagatg-aacatctct-tgtcaatta-ggcaaaaa-tcca-gc 32578065

                                                                            
Query: 628      tggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaact 687
                |||| |||||  || ||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct: 32578066 tggaattctctgtt-acccagccccc-aggtttccacagctgtaattaagccctataact 32578123

                                                                            
Query: 688      ccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaatg 747
                |||||||||||         ||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 32578124 ccatcctcacc---------accctggagcactctgattgtgtgttcattgtagacaatg 32578174

                                                                            
Query: 748      aggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacactaatc 807
                ||||||||| ||||||||||| |||||||||  || |||| | ||||  |||||||||||
Sbjct: 32578175 aggccatctgtgacatctgtcatagaaacctcaattttgagcacccagtctacactaatc 32578234

                                                                            
Query: 808      tgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatgggg 867
                | |||| |||||||||||| | ||||||||||||||||||||| ||||| |||| | | |
Sbjct: 32578235 ttaaccaccttattagccagactgtgtcctccatcactgcttctctgagctttggt-gag 32578293

                                                                            
Query: 868      ccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatccatt 927
                 ||||||||||||  |||||||||||| ||||| | || ||||||| |||| ||||||||
Sbjct: 32578294 acctgaatgttgacgtgacagaattccggaccagcttgttgccctatccccacatccatt 32578353

                                                                            
Query: 928      tccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagctta 987
                ||||| ||| |||||| ||||| |||||||||||||||||| ||||||||| ||||||| 
Sbjct: 32578354 tccctgtggtcacatatgcccctgtcatctctgctgaaaaa-cctaccatggacagcttg 32578412

                                                                            
Query: 988      ctgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgacc 1047
                || ||||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 32578413 ctatagcagaaatcactaatgcttgttttgagccagccaaccagatagtgaaatgtggcc 32578472

                                                                            
Query: 1048     ctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcccaaag 1107
                ||| |||  || |||||||||| |||| |||| ||||  ||||  |  | |||| |||||
Sbjct: 32578473 ctcacca-agtgaatacatggcttgctacctgctgtatagtggcaatgttgttctcaaag 32578531

                                                                            
Query: 1108     acgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggactggt 1167
                || ||||||| ||||||||| || || | ||||| |||| ||||||||||||||| ||||
Sbjct: 32578532 acatcaatgctgccattgccaccatcaagaccaatcgcagcatccagtttgtggaatggt 32578591

                                                                       
Query: 1168     gccccactggcttc-aaggtggcatttatta-cagacccccactgtggtccctgg 1220
                | |||||||||||| ||| ||||||| |||| ||| | ||| |||||||||||||
Sbjct: 32578592 gacccactggcttcaaagttggcattaattaccagcctccccctgtggtccctgg 32578646


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  511 bits (258), Expect = e-142
 Identities = 576/682 (84%)
 Strand = Plus / Minus

                                                                             
Query: 505       ctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgg 564
                 |||| ||||||||||| |||||||||||| |||| |||||||||||||| || || || |
Sbjct: 134326171 ctgatcagtgcacaggacttcagggcttcctggtgttccacagctttggaggcggcaccg 134326112

                                                                             
Query: 565       gttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtcca 624
                 | ||||| |||||||| || ||||||||  | |||||||| || || |||||||| ||||
Sbjct: 134326111 gctctggcttcacctcgctcctgatggagaggctctctgttgactacggcaagaaatcca 134326052

                                                                             
Query: 625       agctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctaca 684
                 |||| ||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||||
Sbjct: 134326051 agctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagccctaca 134325992

                                                                             
Query: 685       actccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagaca 744
                 |||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 134325991 actccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtggaca 134325932

                                                                             
Query: 745       atgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacacta 804
                 | || ||||| || |||||||| ||  | ||||| || || || || || |||||||| |
Sbjct: 134325931 acgaagccatttacgacatctgccgccgcaacctggacatcgagcgtcccacctacacca 134325872

                                                                             
Query: 805       atctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatg 864
                 | || |||||||| || |||||||| || ||||||||||| || |||||| | ||||| |
Sbjct: 134325871 acctcaaccgcctcatcagccaaatcgtctcctccatcacagcgtccctgcgctttgacg 134325812

                                                                             
Query: 865       gggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatcc 924
                 ||||||| || || || ||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 134325811 gggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcatcc 134325752

                                                                             
Query: 925       atttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagc 984
                 | ||||| |||||||| || || || ||||||||||| || || |||||||| || ||||
Sbjct: 134325751 acttcccgctggccacctatgcaccagtcatctctgcagagaaggcctaccacgagcagc 134325692

                                                                             
Query: 985       ttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtg 1044
                 |  | || ||||||||||| || || ||||| ||||| ||||||||||||||||| ||||
Sbjct: 134325691 tgtcggtggcagagatcaccaacgcctgcttcgagcctgccaaccagatggtgaagtgtg 134325632

                                                                             
Query: 1045      accctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttccca 1104
                 | || || ||||| || |||||||||||||||||| ||||||| || ||| |||| ||||
Sbjct: 134325631 atccccgtcatggcaagtacatggcctgctgcctgctgtaccgaggagacgtggtgccca 134325572

                                                                             
Query: 1105      aagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggact 1164
                 | || |||||||||||||| ||  || || | ||||||||||  ||||||||||||||||
Sbjct: 134325571 aggatgtcaatgccgccatcgctgccatcaagaccaagcgcagtatccagtttgtggact 134325512

                                       
Query: 1165      ggtgccccactggcttcaaggt 1186
                 |||||||||| |||||||||||
Sbjct: 134325511 ggtgccccacgggcttcaaggt 134325490



 Score =  500 bits (252), Expect = e-138
 Identities = 576/684 (84%)
 Strand = Plus / Plus

                                                                             
Query: 503       ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 562
                 |||||||||||||||||| || || || ||| |  | |||||||||||||| || || ||
Sbjct: 134346378 ggctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcac 134346437

                                                                             
Query: 563       gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 622
                  || ||||| |||||||| || |||||||| || |||||||| || || |||||||| ||
Sbjct: 134346438 cggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatc 134346497

                                                                             
Query: 623       caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 682
                 |||||| ||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct: 134346498 caagctcgagttctccatctaccctgccccgcaggtgtccacagccgtggtcgagcccta 134346557

                                                                             
Query: 683       caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 742
                 |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 134346558 caactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtgga 134346617

                                                                             
Query: 743       caatgaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 802
                 ||| || |||||||| |||||||| ||  | ||||| || || || || || ||||||||
Sbjct: 134346618 caacgaagccatctacgacatctgccgccgcaacctggacatcgagcgtcccacctacac 134346677

                                                                             
Query: 803       taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 862
                  || || |||||||| ||  ||||||| || ||||||||||| || |||||| | |||||
Sbjct: 134346678 caacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttga 134346737

                                                                             
Query: 863       tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 922
                 ||||||||| || || || ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 134346738 tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 134346797

                                                                             
Query: 923       ccatttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaaca 982
                 ||| ||||| |||||||| || || || ||||||||||| || || |||||||| || ||
Sbjct: 134346798 ccacttccccctggccacctatgcaccagtcatctctgcagagaaggcctaccacgagca 134346857

                                                                             
Query: 983       gcttactgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatg 1042
                 |||  | || ||||||||||| || || ||||| ||||| ||||||||||||||||| ||
Sbjct: 134346858 gctgtcggtggcagagatcaccaacgcctgcttcgagcctgccaaccagatggtgaagtg 134346917

                                                                             
Query: 1043      tgaccctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcc 1102
                 ||| || || ||||| || |||||||||||||||||| ||||||| || ||| |||| ||
Sbjct: 134346918 tgatccccgtcatggcaagtacatggcctgctgcctgctgtaccgaggagacgtggtgcc 134346977

                                                                             
Query: 1103      caaagacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtgga 1162
                 ||| || |||||||||||||| ||  || || | ||||||||||  ||||||||||||||
Sbjct: 134346978 caaggatgtcaatgccgccatcgctgccatcaagaccaagcgcagtatccagtttgtgga 134347037

                                         
Query: 1163      ctggtgccccactggcttcaaggt 1186
                 |||||||||||| |||||||||||
Sbjct: 134347038 ctggtgccccacgggcttcaaggt 134347061



 Score =  208 bits (105), Expect = 5e-51
 Identities = 177/201 (88%)
 Strand = Plus / Minus

                                                                             
Query: 131       gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
                 |||||| ||||||||  |||| ||||| || || ||||||||||| ||||||||||||||
Sbjct: 134327107 gcgtgaatgcatctcagtccatgttgggcaggcaggtgtccagatgggcaatgcctgctg 134327048

                                                                             
Query: 191       ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
                 |||||||||||| |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct: 134327047 ggagctctactgtctggaacatgggatccagccggatgggcagatgcccagtgacaagac 134326988

                                                                             
Query: 251       cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
                 |||||| |||||||| |||||||||| |||||||||| |||| || || ||||| |||||
Sbjct: 134326987 cattggtggaggagacgactccttcaccaccttcttctgtgaaactggtgctggaaagca 134326928

                                      
Query: 311       tgtgcccagggcagtgtttgt 331
                 ||||||| ||||||| |||||
Sbjct: 134326927 tgtgccccgggcagtttttgt 134326907



 Score =  184 bits (93), Expect = 8e-44
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                             
Query: 131       gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 190
                 |||||||||||||||  ||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 134344993 gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 134345052

                                                                             
Query: 191       ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 250
                 ||||||||||||| ||||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 134345053 ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 134345112

                                                                             
Query: 251       cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 310
                 ||| || ||||| || ||||||||||| || ||||| || || || ||||| || |||||
Sbjct: 134345113 catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 134345172

                                      
Query: 311       tgtgcccagggcagtgtttgt 331
                 ||||||| |||||||||||||
Sbjct: 134345173 tgtgccccgggcagtgtttgt 134345193



 Score =  172 bits (87), Expect = 3e-40
 Identities = 135/151 (89%)
 Strand = Plus / Plus

                                                                             
Query: 354       gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
                 ||||| ||||| || ||||| ||||||||||||||||| || |||||||||||||| || 
Sbjct: 134345531 gatgaggttcggacgggcacgtaccgccagctcttccatccggagcagctcatcactggg 134345590

                                                                             
Query: 414       aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 473
                 ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 134345591 aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 134345650

                                                
Query: 474       gacctcgtcttggaccgaattcggaaactgg 504
                 ||||| ||  |||||||||||||||| ||||
Sbjct: 134345651 gacctggtgctggaccgaattcggaagctgg 134345681



 Score =  107 bits (54), Expect = 1e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                             
Query: 368       tggcacctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgc 427
                 |||| ||||||| |||||||||||||| |||||||||||||| || || || ||||| ||
Sbjct: 134326557 tggcccctaccggcagctcttccacccagagcagctcatcactgggaaagaggatgcggc 134326498

                                                                   
Query: 428       caataactatgcccgaggtcactacaccattggcaaggagatcattgacc 477
                  || ||||||||||| |||||||||||||| |||||||| || |||||||
Sbjct: 134326497 taacaactatgcccgtggtcactacaccatcggcaaggaaattattgacc 134326448


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  436 bits (220), Expect = e-119
 Identities = 565/680 (83%)
 Strand = Plus / Minus

                                                                            
Query: 507      gaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgggt 566
                |||| |||||| || || ||||||||| |  | |||||||||||||| || || || || 
Sbjct: 54046279 gacctgtgcacggggctgcagggcttcctcatcttccacagctttgggggcggcaccggc 54046220

                                                                            
Query: 567      tctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaag 626
                || || ||| | || ||||| ||||| || ||||| || || || |||||||||||||||
Sbjct: 54046219 tcgggcttcgcatctctgctcatggagcggctctcggtggactacggcaagaagtccaag 54046160

                                                                            
Query: 627      ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
                ||||||||| |||||||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 54046159 ctggagttcgccatttacccggccccccaggtctccacggccgtggtggagccctacaac 54046100

                                                                            
Query: 687      tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
                |||||||| ||||| ||||| |||||||||||||| || || ||||||||||| ||||| 
Sbjct: 54046099 tccatcctgaccacgcacacgaccctggagcactcggactgcgccttcatggtggacaac 54046040

                                                                            
Query: 747      gaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacactaat 806
                ||||||||||| |||||||||||  | ||||| || || || || || |||||||| || 
Sbjct: 54046039 gaggccatctacgacatctgtcggcgcaacctggacatcgagcggcccacctacaccaac 54045980

                                                                            
Query: 807      ctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatggg 866
                || || || || ||  | || || |||||||||||||| || |||||| | || || |||
Sbjct: 54045979 ctcaatcgtctgatcgggcagatcgtgtcctccatcacagcctccctgcgcttcgacggg 54045920

                                                                            
Query: 867      gccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatccat 926
                ||||| || || || ||||| || ||||||||||||||||| ||||||||||||||||| 
Sbjct: 54045919 gccctcaacgtggacctgacggagttccagaccaacctggtcccctacccccgcatccac 54045860

                                                                            
Query: 927      ttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagctt 986
                ||||| |||||||| |||||||| |||||||| || || || |||||||| || ||||| 
Sbjct: 54045859 ttccccctggccacctacgccccggtcatctcggccgagaaggcctaccacgagcagctg 54045800

                                                                            
Query: 987      actgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgac 1046
                 |||| || |||||||| || || ||||| ||||| |||||||||||||| || ||||||
Sbjct: 54045799 tctgtggccgagatcaccaacgcctgcttcgagccggccaaccagatggtcaagtgtgac 54045740

                                                                            
Query: 1047     cctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcccaaa 1106
                |||||||| || || ||||||||||||||| || ||||| | || ||| |||| ||||||
Sbjct: 54045739 cctcgccacggcaagtacatggcctgctgcatgctgtacaggggagacgtggtccccaaa 54045680

                                                                            
Query: 1107     gacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggactgg 1166
                |||||||| || ||||| ||| || || | |||||||||| |||||||||||||||||||
Sbjct: 54045679 gacgtcaacgcggccatcgccaccatcaagaccaagcgcaccatccagtttgtggactgg 54045620

                                    
Query: 1167     tgccccactggcttcaaggt 1186
                ||||| ||||| ||||||||
Sbjct: 54045619 tgcccgactgggttcaaggt 54045600



 Score =  436 bits (220), Expect = e-119
 Identities = 565/680 (83%)
 Strand = Plus / Plus

                                                                            
Query: 507      gaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaacgggt 566
                |||| |||||| || || ||||||||| |  | |||||||||||||| || || || || 
Sbjct: 54217763 gacctgtgcacggggctgcagggcttcctcatcttccacagctttgggggcggcaccggc 54217822

                                                                            
Query: 567      tctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtccaag 626
                || || ||| | || ||||| ||||| || ||||| || || || |||||||||||||||
Sbjct: 54217823 tcgggcttcgcatctctgctcatggagcggctctcggtggactacggcaagaagtccaag 54217882

                                                                            
Query: 627      ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
                ||||||||| |||||||||| ||||||||||| ||||| || || || ||||||||||||
Sbjct: 54217883 ctggagttcgccatttacccggccccccaggtctccacggccgtggtggagccctacaac 54217942

                                                                            
Query: 687      tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
                |||||||| ||||| ||||| |||||||||||||| || || ||||||||||| ||||| 
Sbjct: 54217943 tccatcctgaccacgcacacgaccctggagcactcggactgcgccttcatggtggacaac 54218002

                                                                            
Query: 747      gaggccatctatgacatctgtcgtagaaaccttgatattgaacgcccaacctacactaat 806
                ||||||||||| |||||||||||  | ||||| || || || || || |||||||| || 
Sbjct: 54218003 gaggccatctacgacatctgtcggcgcaacctggacatcgagcggcccacctacaccaac 54218062

                                                                            
Query: 807      ctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttgatggg 866
                || || || || ||  | || || |||||||||||||| || |||||| | || || |||
Sbjct: 54218063 ctcaatcgtctgatcgggcagatcgtgtcctccatcacagcctccctgcgcttcgacggg 54218122

                                                                            
Query: 867      gccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcatccat 926
                ||||| || || || ||||| || ||||||||||||||||| ||||||||||||||||| 
Sbjct: 54218123 gccctcaacgtggacctgacggagttccagaccaacctggtcccctacccccgcatccac 54218182

                                                                            
Query: 927      ttccctctggccacatacgcccccgtcatctctgctgaaaaagcctaccatgaacagctt 986
                ||||| |||||||| |||||||| |||||||| || || || |||||||| || ||||| 
Sbjct: 54218183 ttccccctggccacctacgccccggtcatctcggccgagaaggcctaccacgagcagctg 54218242

                                                                            
Query: 987      actgtagcagagatcactaatgcttgctttgagccagccaaccagatggtgaaatgtgac 1046
                 |||| || |||||||| || || ||||| ||||| |||||||||||||| || ||||||
Sbjct: 54218243 tctgtggccgagatcaccaacgcctgcttcgagccggccaaccagatggtcaagtgtgac 54218302

                                                                            
Query: 1047     cctcgccatggtaaatacatggcctgctgcctgttgtaccgtggtgacttggttcccaaa 1106
                |||||||| || || ||||||||||||||| || ||||| | || ||| |||| ||||||
Sbjct: 54218303 cctcgccacggcaagtacatggcctgctgcatgctgtacaggggagacgtggtccccaaa 54218362

                                                                            
Query: 1107     gacgtcaatgccgccattgcccccctccaaaccaagcgcaacatccagtttgtggactgg 1166
                |||||||| || ||||| ||| || || | |||||||||| |||||||||||||||||||
Sbjct: 54218363 gacgtcaacgcggccatcgccaccatcaagaccaagcgcaccatccagtttgtggactgg 54218422

                                    
Query: 1167     tgccccactggcttcaaggt 1186
                ||||| ||||| ||||||||
Sbjct: 54218423 tgcccgactgggttcaaggt 54218442



 Score =  182 bits (92), Expect = 3e-43
 Identities = 182/212 (85%)
 Strand = Plus / Minus

                                                                            
Query: 135      gagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggag 194
                ||||||||||| |||||||| || || || || || ||||||||||||||||||||||||
Sbjct: 54047701 gagtgcatctctatccacgtggggcaggcaggggttcagatcggcaatgcctgctgggag 54047642

                                                                            
Query: 195      ctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagaccatt 254
                || |||||||| ||||| || || ||||||||||| |||||||| |||||||| ||||| 
Sbjct: 54047641 ctgtactgccttgaacatggaattcagcccgatggtcagatgcccagtgacaaaaccatc 54047582

                                                                            
Query: 255      gggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagcatgtg 314
                || || || || ||||| |||||||| |||||||||||||| || || |||||||| |||
Sbjct: 54047581 ggcggtggggacgactcgttcaacacgttcttcagtgagactggggccggcaagcacgtg 54047522

                                                
Query: 315      cccagggcagtgtttgtagacctggaacccac 346
                ||||| || |||||||| |||||||| |||||
Sbjct: 54047521 cccagagccgtgtttgtggacctggagcccac 54047490



 Score =  182 bits (92), Expect = 3e-43
 Identities = 182/212 (85%)
 Strand = Plus / Plus

                                                                            
Query: 135      gagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctgggag 194
                ||||||||||| |||||||| || || || || || ||||||||||||||||||||||||
Sbjct: 54216341 gagtgcatctctatccacgtggggcaggcaggggttcagatcggcaatgcctgctgggag 54216400

                                                                            
Query: 195      ctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagaccatt 254
                || |||||||| ||||| || || ||||||||||| |||||||| |||||||| ||||| 
Sbjct: 54216401 ctgtactgccttgaacatggaattcagcccgatggtcagatgcccagtgacaaaaccatc 54216460

                                                                            
Query: 255      gggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagcatgtg 314
                || || || || ||||| |||||||| |||||||||||||| || || |||||||| |||
Sbjct: 54216461 ggcggtggggacgactcgttcaacacgttcttcagtgagactggggccggcaagcacgtg 54216520

                                                
Query: 315      cccagggcagtgtttgtagacctggaacccac 346
                ||||| || |||||||| |||||||| |||||
Sbjct: 54216521 cccagagctgtgtttgtggacctggagcccac 54216552



 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                            
Query: 354      gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
                |||||||| ||||| || |||||| | |||||||||||||| |||||||| ||||| || 
Sbjct: 54046693 gatgaagtgcgcacggggacctacaggcagctcttccacccggagcagctgatcaccggg 54046634

                                                                        
Query: 414      aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagat 469
                |||||||| || ||||| || || ||| |||| ||||||||||| |||||||||||
Sbjct: 54046633 aaggaagacgcagccaacaattacgccagaggccactacaccatcggcaaggagat 54046578



 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 99/116 (85%)
 Strand = Plus / Plus

                                                                            
Query: 354      gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 413
                |||||||| ||||| || |||||| | |||||||||||||| |||||||| ||||| || 
Sbjct: 54217349 gatgaagtgcgcacggggacctacaggcagctcttccacccggagcagctgatcaccggg 54217408

                                                                        
Query: 414      aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagat 469
                |||||||| || ||||| || || ||| |||| ||||||||||| |||||||||||
Sbjct: 54217409 aaggaagacgcagccaacaattacgccagaggccactacaccatcggcaaggagat 54217464


>gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891
          Length = 58772

 Score =  424 bits (214), Expect = e-116
 Identities = 550/662 (83%)
 Strand = Plus / Minus

                                                                         
Query: 525   cagggcttcttggttttccacagctttggcgggggaacgggttctgggttcacctccctg 584
             ||||||||| || | |||||||| ||||| ||||| || || ||||| ||||| || |||
Sbjct: 17341 cagggcttcctgatcttccacagttttggggggggcaccggctctggcttcacttctctg 17282

                                                                         
Query: 585   ctgatggaacgtctctctgtcgattatggcaagaagtccaagctggagttctccatttac 644
             ||||||||||| |||||  | ||||| ||||||||||||||||| |||||  |||| |||
Sbjct: 17281 ctgatggaacgcctctccctggattacggcaagaagtccaagctagagtttgccatctac 17222

                                                                         
Query: 645   ccagccccccaggtttccacagctgtagttgagccctacaactccatcctcaccacccac 704
             || || |||||||| ||||| || || || || ||||||||||||||||| |||||||||
Sbjct: 17221 ccggcaccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacccac 17162

                                                                         
Query: 705   accaccctggagcactctgattgtgccttcatggtagacaatgaggccatctatgacatc 764
             ||||||||||| || || ||  ||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 17161 accaccctggaacattcagaaagtgccttcatggtggacaacgaggccatctacgacatc 17102

                                                                         
Query: 765   tgtcgtagaaaccttgatattgaacgcccaacctacactaatctgaaccgccttattagc 824
             || || || ||||| || || || ||||| |||||||| || || |||||||| || |||
Sbjct: 17101 tgccgcaggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatcagc 17042

                                                                         
Query: 825   caaattgtgtcctccatcactgcttccctgaggtttgatggggccctgaatgttgatctg 884
             || || |||||||||||||| || |||||| | |||||||||||||| || || || |||
Sbjct: 17041 cagatcgtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggacctg 16982

                                                                         
Query: 885   acagaattccagaccaacctggtgccctacccccgcatccatttccctctggccacatac 944
             || || ||||||||||||||||||||||||||||||||||| ||||| |||| ||| |||
Sbjct: 16981 accgagttccagaccaacctggtgccctacccccgcatccacttccccctggtcacctac 16922

                                                                         
Query: 945   gcccccgtcatctctgctgaaaaagcctaccatgaacagcttactgtagcagagatcact 1004
             || ||| ||||||||||||| || |||||||| || |||||  |||| || |||||||| 
Sbjct: 16921 gcacccatcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatcacc 16862

                                                                         
Query: 1005  aatgcttgctttgagccagccaaccagatggtgaaatgtgaccctcgccatggtaaatac 1064
             |   | |||||||||||   || |||||||||||| ||||| || || ||||| || |||
Sbjct: 16861 agctcctgctttgagcccaacagccagatggtgaagtgtgatccccgtcatggcaagtac 16802

                                                                         
Query: 1065  atggcctgctgcctgttgtaccgtggtgacttggttcccaaagacgtcaatgccgccatt 1124
             |||||||||||| || | ||||| || ||| |||| ||||| |||||||| | |||||||
Sbjct: 16801 atggcctgctgcatgctctaccggggggacgtggtgcccaaggacgtcaacgtcgccatt 16742

                                                                         
Query: 1125  gcccccctccaaaccaagcgcaacatccagtttgtggactggtgccccactggcttcaag 1184
             ||  || || | |||||| | | |||||||||||| |||||||| ||||| |||||||||
Sbjct: 16741 gctgccatcaagaccaagaggaccatccagtttgtagactggtgtcccacaggcttcaag 16682

               
Query: 1185  gt 1186
             ||
Sbjct: 16681 gt 16680



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                         
Query: 372   acctaccgccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgccaat 431
             |||||||||||||||||||| || |||||||| |||||||| || || ||||| ||||| 
Sbjct: 19380 acctaccgccagctcttccatccagagcagctgatcacaggaaaagaggatgcagccaac 19321

                                                  
Query: 432   aactatgcccgaggtcactacaccattggcaaggaga 468
             ||||||||||| || ||||||||  | ||||||||||
Sbjct: 19320 aactatgcccggggccactacacagtgggcaaggaga 19284


>gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3926
          Length = 32274

 Score =  278 bits (140), Expect = 7e-72
 Identities = 212/232 (91%), Gaps = 3/232 (1%)
 Strand = Plus / Plus

                                                                        
Query: 39   gttactcacctcgactcttagcttgtcggggacggtaaccaggactcggtgtctactcct 98
            |||||||||||| ||||||||||||||||| |||| |||||| ||||||  |||||||||
Sbjct: 7245 gttactcacctcaactcttagcttgtcggg-acggcaaccagaactcggcttctactcct 7303

                                                                        
Query: 99   gttgcctgcgcttgctgaccggtaaccaccatgcgtgagtgcatctccatccacgttggc 158
            | |||||||||||||||||||  | ||||||||| |||||||||||||||||||| ||||
Sbjct: 7304 gctgcctgcgcttgctgaccgc-agccaccatgcatgagtgcatctccatccacgctggc 7362

                                                                        
Query: 159  caagctggtgtccagatcggcaatgcctgctgggagctctactgcctggaacacggcatc 218
            |||||  |||||||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7363 caagcctgtgtccaggttggcagtgcctgctgggagctctactgcctggaacacggcatc 7422

                                                                
Query: 219  cagcccgatggccagatgccgagtgacaagaccattgggggaggagatgact 270
            ||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 7423 cagcctgatggccagatgcc-agtgacaagactattgggggaggagatgact 7473


>Sscrofa_Chr10 
||          Length = 79102373

 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 111/137 (81%)
 Strand = Plus / Minus

                                                                            
Query: 627      ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
                |||||||||||| | ||||||||||||  | | ||||| || || || ||||| || |||
Sbjct: 71596981 ctggagttctccgtctacccagcccccaggatctccactgccgtggtggagccttataac 71596922

                                                                            
Query: 687      tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
                ||| |||| ||||| ||| ||||| | |||||||| || ||  ||||| || | ||||||
Sbjct: 71596921 tccgtccttaccacacaccccaccatagagcactcagactgcaccttcctgctggacaat 71596862

                                 
Query: 747      gaggccatctatgacat 763
                |||||| ||||||||||
Sbjct: 71596861 gaggccgtctatgacat 71596845



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                            
Query: 627      ctggagttctccatttacccagccccccaggtttccacagctgtagttgagccctacaac 686
                |||||||||||| | ||||||||||||  | | ||||| || || || ||||| || |||
Sbjct: 71671920 ctggagttctccgtctacccagcccccaggatctccactgccgtggtggagccttataac 71671979

                                                                            
Query: 687      tccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtagacaat 746
                ||| |||| ||||| ||| ||||| | |||||||| || ||  ||||| || | ||||||
Sbjct: 71671980 tccgtccttaccacacaccccaccatagagcactcagactgcaccttcctgctggacaat 71672039

                                 
Query: 747      gaggccatctatgacat 763
                |||||| ||||||||||
Sbjct: 71672040 gaggccgtctatgacat 71672056



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                            
Query: 148      tccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctctactgcctgg 207
                ||||| ||||||||||||| |||||||| ||  |||| || ||||| ||||| |||||||
Sbjct: 71599685 tccacattggccaagctggcgtccagattggggatgcttgttgggaactctattgcctgg 71599626

                                
Query: 208      aacacggcatccagcc 223
                |||| || ||||||||
Sbjct: 71599625 aacatgggatccagcc 71599610



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 65/76 (85%)
 Strand = Plus / Plus

                                                                            
Query: 148      tccacgttggccaagctggtgtccagatcggcaatgcctgctgggagctctactgcctgg 207
                ||||| ||||||||||||| |||||||| ||  |||| || ||||| ||||| |||||||
Sbjct: 71669216 tccacattggccaagctggcgtccagattggggatgcttgttgggaactctattgcctgg 71669275

                                
Query: 208      aacacggcatccagcc 223
                |||| || ||||||||
Sbjct: 71669276 aacatgggatccagcc 71669291


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,161,782
Number of extensions: 239
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 53
Length of query: 1263
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1242
Effective length of database: 2,808,413,156
Effective search space: 3488049139752
Effective search space used: 3488049139752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)