Animal-Genome cDNA 20110601C-001821


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001821
         (1704 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001038186.1| citrate synthase, mitochondrial precursor [B...   913   0.0  

>ref|NP_001038186.1| citrate synthase, mitochondrial precursor [Bos taurus].
          Length = 466

 Score =  913 bits (2360), Expect = 0.0
 Identities = 449/466 (96%), Positives = 457/466 (98%)
 Frame = +1

Query: 226  MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
            MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQ R+K FRQQHG TVV
Sbjct: 1    MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQTRVKAFRQQHGKTVV 60

Query: 406  GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
            GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQK+LPKAKGGEEPLPEGLF
Sbjct: 61   GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLF 120

Query: 586  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
            WLLVTGQIPTEEQVSWLS+EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAA+TALNSES 
Sbjct: 121  WLLVTGQIPTEEQVSWLSQEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSEST 180

Query: 766  FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
            FARAY+EGI+RTKYWELIYED MDLIAKLPCVAAKIYRNLYREGSSIGAID KLDWSHNF
Sbjct: 181  FARAYSEGINRTKYWELIYEDSMDLIAKLPCVAAKIYRNLYREGSSIGAIDPKLDWSHNF 240

Query: 946  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
            TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300

Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
            HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301  HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360

Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
            REFALKHLP DPMFKLVAQLYKIVPN+LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361  REFALKHLPQDPMFKLVAQLYKIVPNILLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420

Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
            TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGL+K VDSK G
Sbjct: 421  TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFVDSKSG 466


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,118,802
Number of extensions: 1879715
Number of successful extensions: 9153
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9020
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 460
Effective length of database: 14,107,870
Effective search space: 6489620200
Effective search space used: 6489620200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001821
         (1704 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531634.2| PREDICTED: similar to citrate synthase [Canis f...   929   0.0  

>ref|XP_531634.2| PREDICTED: similar to citrate synthase [Canis familiaris].
          Length = 466

 Score =  929 bits (2400), Expect = 0.0
 Identities = 459/466 (98%), Positives = 462/466 (99%)
 Frame = +1

Query: 226  MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
            MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHG TVV
Sbjct: 1    MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVV 60

Query: 406  GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
            GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQK+LPKAKGGEEPLPEGLF
Sbjct: 61   GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGEEPLPEGLF 120

Query: 586  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
            WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN
Sbjct: 121  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 180

Query: 766  FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
            FARAYAEGI+RTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF
Sbjct: 181  FARAYAEGINRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 240

Query: 946  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
            TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300

Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
            HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301  HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360

Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
            REFALKHLPHD MFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361  REFALKHLPHDSMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420

Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
            TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGL+K VDSK G
Sbjct: 421  TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFVDSKSG 466


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,661,071
Number of extensions: 1918750
Number of successful extensions: 9479
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9366
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 460
Effective length of database: 15,274,216
Effective search space: 7026139360
Effective search space used: 7026139360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001821
         (1704 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004068.2| citrate synthase, mitochondrial precursor [Homo...   906   0.0  

>ref|NP_004068.2| citrate synthase, mitochondrial precursor [Homo sapiens].
          Length = 466

 Score =  906 bits (2341), Expect = 0.0
 Identities = 447/466 (95%), Positives = 454/466 (97%)
 Frame = +1

Query: 226  MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
            MALLTAAARL G KNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHG TVV
Sbjct: 1    MALLTAAARLLGTKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGKTVV 60

Query: 406  GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
            GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRG+SIPECQK+LPKAKGGEEPLPEGLF
Sbjct: 61   GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKAKGGEEPLPEGLF 120

Query: 586  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
            WLLVTG IPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAA+TALNSESN
Sbjct: 121  WLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESN 180

Query: 766  FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
            FARAYA+GI RTKYWELIYED MDLIAKLPCVAAKIYRNLYREGS IGAIDS LDWSHNF
Sbjct: 181  FARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKIYRNLYREGSGIGAIDSNLDWSHNF 240

Query: 946  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
            TNMLGYTD QFTEL RLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241  TNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300

Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
            HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301  HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360

Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
            REFALKHLP+DPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361  REFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420

Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
            TVLFGVSRALGVLAQLIWSRALGFPLERPKSMST+GL+K VDSK G
Sbjct: 421  TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEGLMKFVDSKSG 466


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,717,599
Number of extensions: 1910680
Number of successful extensions: 9234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9083
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 460
Effective length of database: 14,737,052
Effective search space: 6779043920
Effective search space used: 6779043920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001821
         (1704 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080720.1| citrate synthase, mitochondrial precursor [Mus ...   909   0.0  
Alignment   gi|NP_082221.2| citrate synthase-like protein [Mus musculus].        860   0.0  

>ref|NP_080720.1| citrate synthase, mitochondrial precursor [Mus musculus].
          Length = 464

 Score =  909 bits (2348), Expect = 0.0
 Identities = 444/464 (95%), Positives = 457/464 (98%)
 Frame = +1

Query: 226  MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
            MALLTAA RL GAKN+SCLVLAARHASASSTNLKD+L++LIPKEQARIKTF+QQHG TVV
Sbjct: 1    MALLTAATRLLGAKNSSCLVLAARHASASSTNLKDVLSNLIPKEQARIKTFKQQHGKTVV 60

Query: 406  GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
            GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF
Sbjct: 61   GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 120

Query: 586  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
            WLLVTGQ+PTEEQVSWLS+EWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN
Sbjct: 121  WLLVTGQMPTEEQVSWLSREWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 180

Query: 766  FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
            FARAYAEG++R KYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDS+LDWSHNF
Sbjct: 181  FARAYAEGMNRAKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSRLDWSHNF 240

Query: 946  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
            TNMLGYTD QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241  TNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300

Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
            HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRY+CQ
Sbjct: 301  HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQ 360

Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
            REFALKHLP DPMFKLVAQLYKIVPN+LLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361  REFALKHLPKDPMFKLVAQLYKIVPNILLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420

Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 1617
            TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGL+K VDSK
Sbjct: 421  TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLMKFVDSK 464


>ref|NP_082221.2| citrate synthase-like protein [Mus musculus].
          Length = 466

 Score =  860 bits (2222), Expect = 0.0
 Identities = 418/466 (89%), Positives = 443/466 (95%)
 Frame = +1

Query: 226  MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
            MALLTAAA   G KN  CLVLAARHASASSTNLKD+L +LIPKEQARIKTFR++HG TVV
Sbjct: 1    MALLTAAAWFLGTKNPPCLVLAARHASASSTNLKDVLRNLIPKEQARIKTFRKKHGKTVV 60

Query: 406  GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
            GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQK+LPKAKGG+EPLPEGLF
Sbjct: 61   GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKLLPKAKGGKEPLPEGLF 120

Query: 586  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
            WLLVTGQ+PTEEQVSWLS+EW KRAALPSHVVTMLDNFPT LHPMSQLSAAIT LN+ESN
Sbjct: 121  WLLVTGQMPTEEQVSWLSQEWVKRAALPSHVVTMLDNFPTKLHPMSQLSAAITVLNNESN 180

Query: 766  FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
            FARAYA+G++RTKYWEL YEDCMDL+AKLPCVAAKIYRNLYRE  +I AIDSKLDWSHNF
Sbjct: 181  FARAYAQGMNRTKYWELTYEDCMDLLAKLPCVAAKIYRNLYREDRNIEAIDSKLDWSHNF 240

Query: 946  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
            TNMLGYTD QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA+NGLAGPL
Sbjct: 241  TNMLGYTDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAALNGLAGPL 300

Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
            HGLANQEVLVWLTQLQKEVG+D SDEKL++YIWNTLNSGRVVPGYGHAVLRKTDPRY+CQ
Sbjct: 301  HGLANQEVLVWLTQLQKEVGEDASDEKLKNYIWNTLNSGRVVPGYGHAVLRKTDPRYSCQ 360

Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
            REFALKHLP DPMFKLV QLYKIVP++LLEQGKAKNPWPNVDAHSGVLLQYYGM EMNYY
Sbjct: 361  REFALKHLPKDPMFKLVGQLYKIVPDILLEQGKAKNPWPNVDAHSGVLLQYYGMREMNYY 420

Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK*G 1623
            TVLFGVSRALGVL+QLIWSRALGFPLERPKSMSTD L+K V+S+ G
Sbjct: 421  TVLFGVSRALGVLSQLIWSRALGFPLERPKSMSTDALMKFVNSESG 466


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,573,969
Number of extensions: 1612175
Number of successful extensions: 7689
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7550
Number of HSP's successfully gapped: 2
Length of query: 568
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 461
Effective length of database: 12,403,707
Effective search space: 5718108927
Effective search space used: 5718108927
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001821
         (1704 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999441.1| citrate synthase, mitochondrial precursor [Sus ...   940   0.0  
Alignment   gi|XP_003355512.1| PREDICTED: citrate synthase, mitochondrial-l...   549   e-156
Alignment   gi|XP_003355511.1| PREDICTED: citrate synthase, mitochondrial-l...   272   5e-73
Alignment   gi|XP_003355514.1| PREDICTED: hypothetical protein LOC100621942...    67   4e-11

>ref|NP_999441.1| citrate synthase, mitochondrial precursor [Sus scrofa].
          Length = 464

 Score =  940 bits (2429), Expect = 0.0
 Identities = 464/464 (100%), Positives = 464/464 (100%)
 Frame = +1

Query: 226  MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 405
            MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV
Sbjct: 1    MALLTAAARLFGAKNASCLVLAARHASASSTNLKDILADLIPKEQARIKTFRQQHGNTVV 60

Query: 406  GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 585
            GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF
Sbjct: 61   GQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLF 120

Query: 586  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 765
            WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN
Sbjct: 121  WLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESN 180

Query: 766  FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 945
            FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF
Sbjct: 181  FARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNF 240

Query: 946  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 1125
            TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL
Sbjct: 241  TNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPL 300

Query: 1126 HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 1305
            HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ
Sbjct: 301  HGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQ 360

Query: 1306 REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 1485
            REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY
Sbjct: 361  REFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYY 420

Query: 1486 TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 1617
            TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK
Sbjct: 421  TVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 464


>ref|XP_003355512.1| PREDICTED: citrate synthase, mitochondrial-like [Sus scrofa].
          Length = 279

 Score =  549 bits (1415), Expect = e-156
 Identities = 269/275 (97%), Positives = 271/275 (98%)
 Frame = +1

Query: 793  HRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 972
            +R   + LIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA
Sbjct: 5    NRKTEFMLIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDA 64

Query: 973  QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 1152
            QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL
Sbjct: 65   QFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVL 124

Query: 1153 VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 1332
            VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP
Sbjct: 125  VWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLP 184

Query: 1333 HDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA 1512
            HDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA
Sbjct: 185  HDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRA 244

Query: 1513 LGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 1617
            LGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK
Sbjct: 245  LGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK 279


>ref|XP_003355511.1| PREDICTED: citrate synthase, mitochondrial-like [Sus scrofa].
          Length = 140

 Score =  272 bits (695), Expect = 5e-73
 Identities = 130/131 (99%), Positives = 131/131 (100%)
 Frame = +1

Query: 424 MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG 603
           MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG
Sbjct: 1   MMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTG 60

Query: 604 QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA 783
           QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA
Sbjct: 61  QIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA 120

Query: 784 EGIHRTKYWEL 816
           EGIHRTKYWE+
Sbjct: 121 EGIHRTKYWEV 131


>ref|XP_003355514.1| PREDICTED: hypothetical protein LOC100621942 [Sus scrofa].
          Length = 711

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +3

Query: 183 LPSFPPRQISEFACHGLTHCGRPALRSQECI 275
           LPSFPPRQISEFACHGLTHCGRPALRSQ+ +
Sbjct: 169 LPSFPPRQISEFACHGLTHCGRPALRSQDAL 199


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,590,592
Number of extensions: 1202889
Number of successful extensions: 6080
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5971
Number of HSP's successfully gapped: 4
Length of query: 568
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 464
Effective length of database: 8,754,644
Effective search space: 4062154816
Effective search space used: 4062154816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001821
         (1704 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr13                                                        2125   0.0  
Sscrofa_Chr05                                                         438   e-120

>Sscrofa_Chr13 
||          Length = 218635234

 Score = 2125 bits (1072), Expect = 0.0
 Identities = 1404/1509 (93%), Gaps = 18/1509 (1%)
 Strand = Plus / Plus

                                                                            
Query: 169      cctgccgcatttctcttccctccttccctccccgccagatctccgaattcgcctgccatg 228
                |||||| || |||||||||| |||||||||||| |||||||||| |||||  |  |||||
Sbjct: 87524162 cctgccacagttctcttcccgccttccctccccaccagatctccaaattccaccaccatg 87524221

                                                                            
Query: 229      gccttactcactgcggccgcccggctcttcggagccaagaatgcatcctgtcttgttctt 288
                || ||||| ||||| || |||| |||||| ||||||||||||||||||||| ||||||||
Sbjct: 87524222 gctttacttactgcagc-gcccagctctttggagccaagaatgcatcctgtattgttctt 87524280

                                                                            
Query: 289      gctgcccggcatgccagtgcttcttccacgaacttaaaagacattttggctgacctgata 348
                |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 87524281 gctgcctggcatgccagcgcttcttccacgaacttgaaagacattttggctgacctgata 87524340

                                                                            
Query: 349      cctaaggagcaagccagaattaagaccttcaggcagcaacacggcaacaccgtggtgggc 408
                |||||||||||| ||||||||||||| |||||||  ||||| ||||| |  |||||||||
Sbjct: 87524341 cctaaggagcaaaccagaattaagactttcaggcgtcaacatggcaagatggtggtgggc 87524400

                                                                            
Query: 409      caaatcactgtggacatgatgtatggtggcatgagaggcatgaagggattggtgtatgaa 468
                ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 87524401 caaatcactgtggacatgatgtatggtg-----agaggcatgaagggattggtgtatgaa 87524455

                                                                            
Query: 469      acatcggttcttgatcctgatgagggcatccgtttccgaggctacagtatccctgaatgc 528
                || | ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct: 87524456 acgttggttcttgatcctgatgagagcatctgtttctgaggctacagtgtccctgaatgc 87524515

                                                                            
Query: 529      cagaaaatgctgcccaaggctaagggtggggaagaaccgctgccagagggcttattttgg 588
                |||||| ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct: 87524516 cagaaactgctgcccaaggctaagggtgggaaagaacccctgccagagggcttcttttgg 87524575

                                                                            
Query: 589      ctgctggtaactggacagatcccaacagaggagcaggtgtcttggctctcaaaagagtgg 648
                |||||||||| |||||||||||||||||||| | ||||| |||| |||||||||||||||
Sbjct: 87524576 ctgctggtaattggacagatcccaacagaggggtaggtgacttgcctctcaaaagagtgg 87524635

                                                                            
Query: 649      gcaaagagggcagctctgccttcccatgtggtcaccatgctggacaactttcccacgaat 708
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 87524636 gcaaagagggcagctctgccttcccatgtggtcacc-tgctggacaactttcccatgaat 87524694

                                                                            
Query: 709      ctacaccccatgtctcagctcagtgcagccattacagccctcaacagtgaaagtaacttt 768
                |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 87524695 ctacaccccatgtctcagcttagtgcagccattacagccctcaacagtgaaagtaacttt 87524754

                                                                            
Query: 769      gcccgagcatatgcagagggtatccaccgaaccaagtactgggagttgatttatgaagac 828
                |||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||
Sbjct: 87524755 gcccgagcatatgcagggggtgtcctccgaactaagtactaggagttgatttatgaagac 87524814

                                                                            
Query: 829      tgtatggatctgatcgcaaagctaccttgtgttgcagcaaagatctaccggaatctctac 888
                ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||  ||
Sbjct: 87524815 tgtatggatctgatcacaaagctaccttgtgttgcagcaaagatctactggaatct--ac 87524872

                                                                            
Query: 889      cgggagggcagcagtattggggccattgattctaaactggactggtcccacaatttcacc 948
                 || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 87524873 tggtagggcagcagtattagggccattgattctaagctggactggtcccacaatttcacg 87524932

                                                                            
Query: 949      aacatgttaggctatactgatgctcagttcacggagctcatgcgcttgtacctcaccatc 1008
                ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 87524933 aacatgttaggctatactgatgctcagttcacggagctcatgcccttgtacctcaccatc 87524992

                                                                            
Query: 1009     cacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgcc 1068
                |||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||
Sbjct: 87524993 cacagtgaccatgaaggtggcagtctaaatgcttataccagccatttggtgggcagtgcc 87525052

                                                                            
Query: 1069     ctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctacat 1128
                 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 87525053 ttttcagacccctacttgtcctttgcagcagccatgaatgggctgacagggcccttacat 87525112

                                                                            
Query: 1129     gggctggca----aatcaggaagtgcttgtttggctgacacagctgcagaaggaagtcgg 1184
                || ||||||    |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 87525113 ggactggcaggcaaatcaggaagtgcttgtttggctgacacagctacagaaagaagttgg 87525172

                                                                            
Query: 1185     caaagatgtgtcagatgagaagttacgagactacatctggaatacactcaactcaggacg 1244
                ||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| 
Sbjct: 87525173 caaagatgtatcagatgagaagttatgagactacatctggaacacactcaactcaggaca 87525232

                                                                            
Query: 1245     ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 1304
                ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct: 87525233 ggttgtcccaggctatggccatgcagtactaaggaagactgatccacaagatacctgtca 87525292

                                                                            
Query: 1305     aa-gagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagc 1363
                || |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 87525293 aaagagagtttgctctgaaacgcctgcctcatgaccccgtgtttaagctggttgctcagc 87525352

                                                                            
Query: 1364     tgtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggccca 1423
                ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 87525353 tgtacgagattgtgcccaatgtcctcctggagcagggcaaggccaagaatccttggccca 87525412

                                                                            
Query: 1424     atgtggatgctcacagtggggtgctgctccagtactatggcatgacggagatgaactact 1483
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87525413 atgtggatgctcacagtggggtgctgctccagtactatggcatgacggagatgaactact 87525472

                                                                            
Query: 1484     acacagtcctgttcggggtatcacgggcactgggtgtattagcacagctcatctggagcc 1543
                |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct: 87525473 acacagtcctgttcagggtatcacgggcactgggtgtattagcatagctcatctggagct 87525532

                                                                            
Query: 1544     gagccttaggcttccctctagagaggcccaagtccatgagcacagacggtctgataaaac 1603
                |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| 
Sbjct: 87525533 gagccttaggcttccctctagagaggcccaagtccatgagcacagatggtctgatgaaat 87525592

                                                                            
Query: 1604     ttgtggactctaagtgagggtgaaactgaagactgggaagaaactaactaccagaaagtg 1663
                ||||||||||||||| |||||||||||||||||||||| ||    |||||||||||||||
Sbjct: 87525593 ttgtggactctaagtcagggtgaaactgaagactgggagga----aactaccagaaagtg 87525648

                         
Query: 1664     agggatctt 1672
                |||||||||
Sbjct: 87525649 agggatctt 87525657


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  438 bits (221), Expect = e-120
 Identities = 221/221 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1453     cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 1512
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162694 cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 23162635

                                                                            
Query: 1513     ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 1572
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162634 ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 23162575

                                                                            
Query: 1573     aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 1632
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162574 aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 23162515

                                                         
Query: 1633     agactgggaagaaactaactaccagaaagtgagggatcttt 1673
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23162514 agactgggaagaaactaactaccagaaagtgagggatcttt 23162474



 Score =  438 bits (221), Expect = e-120
 Identities = 221/221 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1453     cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 1512
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172384 cagtactatggcatgacggagatgaactactacacagtcctgttcggggtatcacgggca 23172443

                                                                            
Query: 1513     ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 1572
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172444 ctgggtgtattagcacagctcatctggagccgagccttaggcttccctctagagaggccc 23172503

                                                                            
Query: 1573     aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 1632
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172504 aagtccatgagcacagacggtctgataaaacttgtggactctaagtgagggtgaaactga 23172563

                                                         
Query: 1633     agactgggaagaaactaactaccagaaagtgagggatcttt 1673
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23172564 agactgggaagaaactaactaccagaaagtgagggatcttt 23172604



 Score =  418 bits (211), Expect = e-114
 Identities = 211/211 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1245     ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 1304
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163224 ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 23163165

                                                                            
Query: 1305     aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 1364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163164 aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 23163105

                                                                            
Query: 1365     gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 1424
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163104 gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 23163045

                                               
Query: 1425     tgtggatgctcacagtggggtgctgctccag 1455
                |||||||||||||||||||||||||||||||
Sbjct: 23163044 tgtggatgctcacagtggggtgctgctccag 23163014



 Score =  418 bits (211), Expect = e-114
 Identities = 211/211 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1245     ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 1304
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171854 ggttgtcccaggctatggccacgcagtactaaggaagactgatccacgatatacctgtca 23171913

                                                                            
Query: 1305     aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 1364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171914 aagagagtttgctctgaaacacctgcctcatgaccccatgtttaagctggttgctcagct 23171973

                                                                            
Query: 1365     gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 1424
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171974 gtacaagattgtgcccaatgtcctcctggaacagggcaaggctaagaatccttggcccaa 23172033

                                               
Query: 1425     tgtggatgctcacagtggggtgctgctccag 1455
                |||||||||||||||||||||||||||||||
Sbjct: 23172034 tgtggatgctcacagtggggtgctgctccag 23172064



 Score =  400 bits (202), Expect = e-108
 Identities = 202/202 (100%)
 Strand = Plus / Minus

                                                                            
Query: 812      agttgatttatgaagactgtatggatctgatcgcaaagctaccttgtgttgcagcaaaga 871
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164935 agttgatttatgaagactgtatggatctgatcgcaaagctaccttgtgttgcagcaaaga 23164876

                                                                            
Query: 872      tctaccggaatctctaccgggagggcagcagtattggggccattgattctaaactggact 931
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164875 tctaccggaatctctaccgggagggcagcagtattggggccattgattctaaactggact 23164816

                                                                            
Query: 932      ggtcccacaatttcaccaacatgttaggctatactgatgctcagttcacggagctcatgc 991
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23164815 ggtcccacaatttcaccaacatgttaggctatactgatgctcagttcacggagctcatgc 23164756

                                      
Query: 992      gcttgtacctcaccatccacag 1013
                ||||||||||||||||||||||
Sbjct: 23164755 gcttgtacctcaccatccacag 23164734



 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                            
Query: 622      caggtgtcttggctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtc 681
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083501 caggtgtcttggctctcaaaagagtgggcaaagagggcagctctgccttcccatgtggtc 23083442

                                                                            
Query: 682      accatgctggacaactttcccacgaatctacaccccatgtctcagctcagtgcagccatt 741
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083441 accatgctggacaactttcccacgaatctacaccccatgtctcagctcagtgcagccatt 23083382

                                                                            
Query: 742      acagccctcaacagtgaaagtaactttgcccgagcatatgcagagggtatccaccgaacc 801
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083381 acagccctcaacagtgaaagtaactttgcccgagcatatgcagagggtatccaccgaacc 23083322

                            
Query: 802      aagtactgggag 813
                ||||||||||||
Sbjct: 23083321 aagtactgggag 23083310



 Score =  272 bits (137), Expect = 6e-70
 Identities = 137/137 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1008     ccacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgc 1067
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163908 ccacagtgaccatgaaggtggcaatgtaagtgctcataccagccatttggtgggcagtgc 23163849

                                                                            
Query: 1068     cctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctaca 1127
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163848 cctttcagacccctacttgtcctttgcagcagccatgaatgggctggcagggcccctaca 23163789

                                 
Query: 1128     tgggctggcaaatcagg 1144
                |||||||||||||||||
Sbjct: 23163788 tgggctggcaaatcagg 23163772



 Score =  270 bits (136), Expect = 2e-69
 Identities = 136/136 (100%)
 Strand = Plus / Minus

                                                                            
Query: 491      agggcatccgtttccgaggctacagtatccctgaatgccagaaaatgctgcccaaggcta 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083866 agggcatccgtttccgaggctacagtatccctgaatgccagaaaatgctgcccaaggcta 23083807

                                                                            
Query: 551      agggtggggaagaaccgctgccagagggcttattttggctgctggtaactggacagatcc 610
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23083806 agggtggggaagaaccgctgccagagggcttattttggctgctggtaactggacagatcc 23083747

                                
Query: 611      caacagaggagcaggt 626
                ||||||||||||||||
Sbjct: 23083746 caacagaggagcaggt 23083731



 Score =  216 bits (109), Expect = 3e-53
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                            
Query: 318      gaacttaaaagacattttggctgacctgatacctaaggagcaagccagaattaagacctt 377
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085470 gaacttaaaagacattttggctgacctgatacctaaggagcaagccagaattaagacctt 23085411

                                                                 
Query: 378      caggcagcaacacggcaacaccgtggtgggccaaatcactgtggacatg 426
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23085410 caggcagcaacacggcaacaccgtggtgggccaaatcactgtggacatg 23085362



 Score =  212 bits (107), Expect = 5e-52
 Identities = 107/107 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1141     caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 1200
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163673 caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 23163614

                                                               
Query: 1201     gagaagttacgagactacatctggaatacactcaactcaggacgggt 1247
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23163613 gagaagttacgagactacatctggaatacactcaactcaggacgggt 23163567



 Score =  212 bits (107), Expect = 5e-52
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1141     caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 1200
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171404 caggaagtgcttgtttggctgacacagctgcagaaggaagtcggcaaagatgtgtcagat 23171463

                                                               
Query: 1201     gagaagttacgagactacatctggaatacactcaactcaggacgggt 1247
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23171464 gagaagttacgagactacatctggaatacactcaactcaggacgggt 23171510



 Score =  135 bits (68), Expect = 9e-29
 Identities = 68/68 (100%)
 Strand = Plus / Minus

                                                                            
Query: 426      gatgtatggtggcatgagaggcatgaagggattggtgtatgaaacatcggttcttgatcc 485
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23084476 gatgtatggtggcatgagaggcatgaagggattggtgtatgaaacatcggttcttgatcc 23084417

                        
Query: 486      tgatgagg 493
                ||||||||
Sbjct: 23084416 tgatgagg 23084409


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,387,768
Number of extensions: 425
Number of successful extensions: 425
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 14
Length of query: 1704
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1682
Effective length of database: 2,808,408,574
Effective search space: 4723743221468
Effective search space used: 4723743221468
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)