Animal-Genome cDNA 20110601C-001878


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001878
         (1121 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039614.1| transgelin [Bos taurus].                          407   e-114
Alignment   gi|NP_001029671.1| transgelin-3 [Bos taurus].                        281   1e-75
Alignment   gi|NP_001013617.1| transgelin-2 [Bos taurus].                        272   3e-73
Alignment   gi|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].        234   1e-61
Alignment   gi|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].                234   1e-61
Alignment   gi|NP_001033268.1| calponin-3 [Bos taurus].                          147   1e-35
Alignment   gi|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].          147   2e-35
Alignment   gi|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].     147   2e-35
Alignment   gi|NP_001039844.1| calponin-1 [Bos taurus].                          139   3e-33
Alignment   gi|NP_001030497.1| calponin-2 [Bos taurus].                          130   2e-30

>ref|NP_001039614.1| transgelin [Bos taurus].
          Length = 201

 Score =  407 bits (1047), Expect = e-114
 Identities = 199/201 (99%), Positives = 201/201 (100%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201


>ref|NP_001029671.1| transgelin-3 [Bos taurus].
          Length = 199

 Score =  281 bits (718), Expect = 1e-75
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|NP_001013617.1| transgelin-2 [Bos taurus].
          Length = 199

 Score =  272 bits (696), Expect = 3e-73
 Identities = 129/200 (64%), Positives = 164/200 (82%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRYFSDNQLQEGKNVIGLQMG 179

Query: 613 SNRGASQAGMTGYGRPRQII 672
           +NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199


>ref|XP_002690168.1| PREDICTED: transgelin 2-like [Bos taurus].
          Length = 199

 Score =  234 bits (597), Expect = 1e-61
 Identities = 112/200 (56%), Positives = 149/200 (74%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GP+YG+S+EVQ KI+K+YD +LE+ L++WI  QC   V RP  G   FQ WLK+G 
Sbjct: 1   MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           +L +L+N LYP+G  PVK  +   +  FKQM Q++QFL+AAE YG+   D+ QTVDL+EG
Sbjct: 61  VLCELINGLYPEGQAPVKKIQ-ASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEG 119

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           K++A VQRTLM LG L V  +DG + GDPNWF KK++E+ R F ++QLQEGK++ GLQMG
Sbjct: 120 KNMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMG 179

Query: 613 SNRGASQAGMTGYGRPRQII 672
           +N GASQAG+T Y  P QI+
Sbjct: 180 TNHGASQAGLTDYAMPCQIL 199


>ref|XP_582214.3| PREDICTED: transgelin 2 [Bos taurus].
          Length = 199

 Score =  234 bits (597), Expect = 1e-61
 Identities = 112/200 (56%), Positives = 149/200 (74%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GP+YG+S+EVQ KI+K+YD +LE+ L++WI  QC   V RP  G   FQ WLK+G 
Sbjct: 1   MANRGPAYGLSQEVQQKIDKQYDADLEQILIQWITTQCRKHVSRPQPGCTNFQNWLKDGT 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           +L +L+N LYP+G  PVK  +   +  FKQM Q++QFL+AAE YG+   D+ QTVDL+EG
Sbjct: 61  VLCELINGLYPEGQAPVKKIQ-ASTTAFKQMGQISQFLQAAERYGINTNDISQTVDLWEG 119

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           K++A VQRTLM LG L V  +DG + GDPNWF KK++E+ R F ++QLQEGK++ GLQMG
Sbjct: 120 KNMACVQRTLMNLGRLVVAWDDGLFSGDPNWFTKKSKENPRYFPDNQLQEGKNLFGLQMG 179

Query: 613 SNRGASQAGMTGYGRPRQII 672
           +N GASQAG+T Y  P QI+
Sbjct: 180 TNHGASQAGLTDYAMPCQIL 199


>ref|NP_001033268.1| calponin-3 [Bos taurus].
          Length = 329

 Score =  147 bits (372), Expect = 1e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 59  CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQAGMT YG  R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188


>ref|XP_002686086.1| PREDICTED: calponin 3-like [Bos taurus].
          Length = 329

 Score =  147 bits (370), Expect = 2e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 59  CELINKLQPGPVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQAGMT YG  R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188


>ref|XP_001254702.1| PREDICTED: calponin 3 isoform 1 [Bos taurus].
          Length = 329

 Score =  147 bits (370), Expect = 2e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGA------NFQLGLKDGIIL 58

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 59  CELINKLQPGPVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQAGMT YG  R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188


>ref|NP_001039844.1| calponin-1 [Bos taurus].
          Length = 297

 Score =  139 bits (351), Expect = 3e-33
 Identities = 79/197 (40%), Positives = 116/197 (58%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           N+GP+YG+S EV++K+ +KYD + E+ L EWI    G  +G        F   LK+G+IL
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            + +N L P   K V    N  +  + Q+E +  F+KA   YGV   D+F+  DLFE  +
Sbjct: 61  CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
              VQ TL+AL S+A TK +       N  +K A++ +R F   +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ GMT YG  R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188


>ref|NP_001030497.1| calponin-2 [Bos taurus].
          Length = 309

 Score =  130 bits (327), Expect = 2e-30
 Identities = 81/197 (41%), Positives = 119/197 (60%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV+++++ KYD + E  L  WI    G  VG PD     FQ  LK+G+IL
Sbjct: 7   NKGPSYGLSAEVKNRLQSKYDPQKEAELRSWIEGLTGLSVG-PD-----FQKGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
             L+N L P GS P K+  N     + Q+E ++ F+KA   YG+   D+F+  DLFE  +
Sbjct: 61  CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           L  VQ +L+AL   A TK     +   +  +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 LTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTN 173

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ+GMT YG  R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,957,766
Number of extensions: 1455289
Number of successful extensions: 7274
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7218
Number of HSP's successfully gapped: 10
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001878
         (1121 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Can...   403   e-112
Alignment   gi|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Can...   392   e-109
Alignment   gi|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Can...   384   e-107
Alignment   gi|XP_535738.1| PREDICTED: similar to neuronal protein [Canis f...   281   6e-76
Alignment   gi|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis famil...   280   2e-75
Alignment   gi|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth...   140   3e-33
Alignment   gi|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth...   140   3e-33
Alignment   gi|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isof...   126   4e-29
Alignment   gi|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familia...   125   6e-29
Alignment   gi|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isof...   115   1e-25

>ref|XP_536561.2| PREDICTED: similar to transgelin isoform 1 [Canis familiaris].
          Length = 201

 Score =  403 bits (1036), Expect = e-112
 Identities = 197/201 (98%), Positives = 200/201 (99%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCG DVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201


>ref|XP_861115.1| PREDICTED: similar to transgelin isoform 3 [Canis familiaris].
          Length = 220

 Score =  392 bits (1006), Expect = e-109
 Identities = 197/220 (89%), Positives = 200/220 (90%), Gaps = 19/220 (8%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCG DVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK-------------------KAQEHKR 555
           KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK                   KAQEHKR
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKYVAARVPCPESLSWLPTSRKAQEHKR 180

Query: 556 EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 675
           EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS
Sbjct: 181 EFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS 220


>ref|XP_861087.1| PREDICTED: similar to transgelin isoform 2 [Canis familiaris].
          Length = 196

 Score =  384 bits (986), Expect = e-107
 Identities = 191/201 (95%), Positives = 194/201 (96%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI++QCG DVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVMQCGSDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDL+EG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLYEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK      REFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMK-----YREFTESQLQEGKHVIGLQMG 175

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 176 SNRGASQAGMTGYGRPRQIIS 196


>ref|XP_535738.1| PREDICTED: similar to neuronal protein [Canis familiaris].
          Length = 199

 Score =  281 bits (720), Expect = 6e-76
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIAHPPPGRAHFQQWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|XP_852741.1| PREDICTED: similar to transgelin 2 [Canis familiaris].
          Length = 271

 Score =  280 bits (716), Expect = 2e-75
 Identities = 133/209 (63%), Positives = 168/209 (80%)
 Frame = +1

Query: 46  PRGTPLPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLG 225
           P   PLP  MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  
Sbjct: 64  PPQPPLPFGMANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGREN 123

Query: 226 FQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDM 405
           FQ WLK+G +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+
Sbjct: 124 FQNWLKDGTVLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDI 182

Query: 406 FQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEG 585
           FQTVDL+EGK++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEG
Sbjct: 183 FQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEG 242

Query: 586 KHVIGLQMGSNRGASQAGMTGYGRPRQII 672
           K+VIGLQMG+NRGASQAGMTGYG PRQI+
Sbjct: 243 KNVIGLQMGTNRGASQAGMTGYGMPRQIL 271


>ref|XP_867647.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 3
           [Canis familiaris].
          Length = 258

 Score =  140 bits (352), Expect = 3e-33
 Identities = 79/197 (40%), Positives = 117/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           N+GP+YG+S EV++K+ +KYD + E+ L EWI    G  +G        F   LK+G+IL
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            + +N L P   K V    N  +  + Q+E +  F+KA   YGV   D+F+  DLFE  +
Sbjct: 61  CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
              VQ TL+AL S+A TK +       N  +K A++ +R+F   +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ GMT YG  R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188


>ref|XP_542053.1| PREDICTED: similar to calponin 1, basic, smooth muscle isoform 1
           [Canis familiaris].
          Length = 297

 Score =  140 bits (352), Expect = 3e-33
 Identities = 79/197 (40%), Positives = 117/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           N+GP+YG+S EV++K+ +KYD + E+ L EWI    G  +G        F   LK+G+IL
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            + +N L P   K V    N  +  + Q+E +  F+KA   YGV   D+F+  DLFE  +
Sbjct: 61  CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
              VQ TL+AL S+A TK +       N  +K A++ +R+F   +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ GMT YG  R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188


>ref|XP_854646.1| PREDICTED: similar to calponin 2 isoform a isoform 1 [Canis
           familiaris].
          Length = 309

 Score =  126 bits (316), Expect = 4e-29
 Identities = 80/197 (40%), Positives = 117/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++++  KYD + E  L  WI    G  +G PD     FQ  LK+GVIL
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGVIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
             L+N L P GS P K+  N     + Q+E ++ F+KA   YG+   D+F+  DLFE  +
Sbjct: 61  CTLMNKLQP-GSVP-KI--NRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ +L+AL   A TK     +   +  +K +++ +R F ++ ++ G  VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTN 173

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ+GMT YG  R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190


>ref|XP_537063.2| PREDICTED: similar to calponin 3 [Canis familiaris].
          Length = 360

 Score =  125 bits (315), Expect = 6e-29
 Identities = 75/183 (40%), Positives = 105/183 (57%)
 Frame = +1

Query: 121 KIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPDGSKP 300
           KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL +L+N L P   K 
Sbjct: 50  KIASKYDHQAEEDLRNWIEEVTGMSIGT------NFQLGLKDGIILCELINKLQPGSVKK 103

Query: 301 VKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKDLAAVQRTLMALGSL 480
           V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  ++  VQ TL+AL  L
Sbjct: 104 V----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGL 159

Query: 481 AVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRP 660
           A TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N+ ASQAGMT YG  
Sbjct: 160 AKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTR 216

Query: 661 RQI 669
           R +
Sbjct: 217 RHL 219


>ref|XP_868614.1| PREDICTED: similar to calponin 2 isoform a isoform 2 [Canis
           familiaris].
          Length = 300

 Score =  115 bits (287), Expect = 1e-25
 Identities = 76/197 (38%), Positives = 110/197 (55%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++++  KYD + E  L  WI    G  +G PD     FQ  LK+GVIL
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGVIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
             L+N L P GS P K+  N     + Q+E ++ F+KA   YG+   D+F+  DLFE  +
Sbjct: 61  CTLMNKLQP-GSVP-KI--NRSLQNWHQLENLSTFIKAMVSYGMNPVDLFEANDLFESGN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ     L S              +  +K +++ +R F ++ ++ G  VIGLQMG+N
Sbjct: 117 MTQVQAKTKGLQS------------GVDIGVKYSEKQERNFDDATMKAGHCVIGLQMGTN 164

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ+GMT YG  R +
Sbjct: 165 KCASQSGMTAYGTRRHL 181


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,093,981
Number of extensions: 1502293
Number of successful extensions: 7742
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7671
Number of HSP's successfully gapped: 13
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001878
         (1121 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001522.1| transgelin [Homo sapiens].                        406   e-113
Alignment   gi|NP_003177.2| transgelin [Homo sapiens].                           406   e-113
Alignment   gi|NP_037391.2| transgelin-3 [Homo sapiens].                         281   6e-76
Alignment   gi|NP_001008274.1| transgelin-3 [Homo sapiens].                      281   6e-76
Alignment   gi|NP_001008273.1| transgelin-3 [Homo sapiens].                      281   6e-76
Alignment   gi|NP_003555.1| transgelin-2 [Homo sapiens].                         273   2e-73
Alignment   gi|NP_001830.1| calponin-3 [Homo sapiens].                           147   2e-35
Alignment   gi|NP_001290.2| calponin-1 [Homo sapiens].                           139   4e-33
Alignment   gi|NP_004359.1| calponin-2 isoform a [Homo sapiens].                 125   5e-29
Alignment   gi|NP_958434.1| calponin-2 isoform b [Homo sapiens].                 102   8e-22

>ref|NP_001001522.1| transgelin [Homo sapiens].
          Length = 201

 Score =  406 bits (1043), Expect = e-113
 Identities = 199/201 (99%), Positives = 200/201 (99%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGV KTDMFQTVDLFEG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KD+AAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201


>ref|NP_003177.2| transgelin [Homo sapiens].
          Length = 201

 Score =  406 bits (1043), Expect = e-113
 Identities = 199/201 (99%), Positives = 200/201 (99%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGV KTDMFQTVDLFEG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLFEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KD+AAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201


>ref|NP_037391.2| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  281 bits (720), Expect = 6e-76
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|NP_001008274.1| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  281 bits (720), Expect = 6e-76
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|NP_001008273.1| transgelin-3 [Homo sapiens].
          Length = 199

 Score =  281 bits (720), Expect = 6e-76
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|NP_003555.1| transgelin-2 [Homo sapiens].
          Length = 199

 Score =  273 bits (699), Expect = 2e-73
 Identities = 129/200 (64%), Positives = 165/200 (82%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           +L +L+N+LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  VLCELINALYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179

Query: 613 SNRGASQAGMTGYGRPRQII 672
           +NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199


>ref|NP_001830.1| calponin-3 [Homo sapiens].
          Length = 329

 Score =  147 bits (371), Expect = 2e-35
 Identities = 85/197 (43%), Positives = 118/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGP------NFQLGLKDGIIL 58

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 59  CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQAGMT YG  R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188


>ref|NP_001290.2| calponin-1 [Homo sapiens].
          Length = 297

 Score =  139 bits (351), Expect = 4e-33
 Identities = 78/197 (39%), Positives = 117/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           N+GP+YG+S EV++K+ +KYD + E+ L EWI    G  +G        F   LK+G+IL
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            + +N L P   K +    N  +  + Q+E +  F+KA   YGV   D+F+  DLFE  +
Sbjct: 61  CEFINKLQPGSVKKI----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
              VQ TL+AL S+A TK +       N  +K A++ +R+F   +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPGKLREGRNIIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ GMT YG  R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188


>ref|NP_004359.1| calponin-2 isoform a [Homo sapiens].
          Length = 309

 Score =  125 bits (315), Expect = 5e-29
 Identities = 79/197 (40%), Positives = 117/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++++  KYD + E  L  WI    G  +G PD     FQ  LK+G IL
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG-PD-----FQKGLKDGTIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
             L+N L P GS P K+  N     + Q+E ++ F+KA   YG+   D+F+  DLFE  +
Sbjct: 61  CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ +L+AL   A TK     +   +  +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTN 173

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ+GMT YG  R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190


>ref|NP_958434.1| calponin-2 isoform b [Homo sapiens].
          Length = 270

 Score =  102 bits (253), Expect = 8e-22
 Identities = 75/198 (37%), Positives = 103/198 (52%), Gaps = 1/198 (0%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++++  KYD + E  L  WI    G  +G PD     FQ  LK+G IL
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRTWIEGLTGLSIG-PD-----FQKGLKDGTIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
             L+N L P GS P K+  N     + Q+E ++ F+KA   YG+   D+F+  DLFE  +
Sbjct: 61  CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKH-VIGLQMGS 615
           +  VQ +L+AL     T       G   +  ++   H  +     L    H  I LQMG+
Sbjct: 117 MTQVQVSLLALAGKMGTNKCASQSGMTAYGTRR---HLYDPKNHILPPMDHSTISLQMGT 173

Query: 616 NRGASQAGMTGYGRPRQI 669
           N+ ASQ GMT  G  R I
Sbjct: 174 NKCASQVGMTAPGTRRHI 191


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,931,157
Number of extensions: 1455531
Number of successful extensions: 7453
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7398
Number of HSP's successfully gapped: 10
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001878
         (1121 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035656.1| transgelin [Mus musculus].                           398   e-111
Alignment   gi|NP_062728.1| transgelin-3 [Mus musculus].                         281   9e-76
Alignment   gi|NP_848713.1| transgelin-2 [Mus musculus].                         277   9e-75
Alignment   gi|NP_082320.1| calponin-3 [Mus musculus].                           147   1e-35
Alignment   gi|NP_034052.3| calponin-1 [Mus musculus].                           139   3e-33
Alignment   gi|NP_031751.1| calponin-2 [Mus musculus].                           127   1e-29

>ref|NP_035656.1| transgelin [Mus musculus].
          Length = 201

 Score =  398 bits (1022), Expect = e-111
 Identities = 193/201 (96%), Positives = 200/201 (99%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWI+VQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYP+GSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGV KTDMFQTVDL+EG
Sbjct: 61  ILSKLVNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KD+AAVQRTLMALGSLAVTKNDG+YRGDPNWFMKKAQEHKR+FT+SQLQEGKHVIGLQMG
Sbjct: 121 KDMAAVQRTLMALGSLAVTKNDGNYRGDPNWFMKKAQEHKRDFTDSQLQEGKHVIGLQMG 180

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201


>ref|NP_062728.1| transgelin-3 [Mus musculus].
          Length = 199

 Score =  281 bits (718), Expect = 9e-76
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRAHFQKWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEVYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|NP_848713.1| transgelin-2 [Mus musculus].
          Length = 199

 Score =  277 bits (709), Expect = 9e-75
 Identities = 132/200 (66%), Positives = 165/200 (82%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIEK+YD +LE+ L++WI  QC  DVG+P  GR  FQ WLK+G 
Sbjct: 1   MANRGPSYGLSREVQQKIEKQYDADLEQILIQWITTQCREDVGQPQPGRENFQKWLKDGT 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           +L KL+NSLYP+G  PVK  +   SM FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  VLCKLINSLYPEGQAPVKKIQ-ASSMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179

Query: 613 SNRGASQAGMTGYGRPRQII 672
           +NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199


>ref|NP_082320.1| calponin-3 [Mus musculus].
          Length = 330

 Score =  147 bits (372), Expect = 1e-35
 Identities = 85/197 (43%), Positives = 119/197 (60%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++KI  KYD++ EE L  WI    G  +G        FQ+ LK+G+IL
Sbjct: 5   NKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGLGIGT------NFQLGLKDGIIL 58

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+   D+F+  DLFE  +
Sbjct: 59  CELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGN 114

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ TL+AL  LA TK    +    +  +K A++  R F E +L+ G+ VIGLQMG+N
Sbjct: 115 MTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQAGMT YG  R +
Sbjct: 172 KCASQAGMTAYGTRRHL 188


>ref|NP_034052.3| calponin-1 [Mus musculus].
          Length = 297

 Score =  139 bits (351), Expect = 3e-33
 Identities = 79/197 (40%), Positives = 116/197 (58%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           N+GP+YG+S EV++K+ +KYD + E+ L EWI    G  +G        F   LK+G+IL
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQREQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            + +N L P   K V    N  +  + Q+E +  F+KA   YGV   D+F+  DLFE  +
Sbjct: 61  CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
              VQ TL+AL S+A TK +       N  +K A++ +R F   +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERRFEPEKLREGRNIIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ GMT YG  R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188


>ref|NP_031751.1| calponin-2 [Mus musculus].
          Length = 305

 Score =  127 bits (320), Expect = 1e-29
 Identities = 80/197 (40%), Positives = 118/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++++  KYD + E  L  WI    G  +G PD     FQ  LK+GVIL
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGVIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
             L+N L P GS P K+  N     + Q+E ++ F+KA   YG+   D+F+  DLFE  +
Sbjct: 61  CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ +L+AL   A TK     +   +  +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQMGTN 173

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ+GMT YG  R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,231,218
Number of extensions: 1195928
Number of successful extensions: 5823
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5785
Number of HSP's successfully gapped: 6
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001878
         (1121 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].               417   e-117
Alignment   gi|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].     409   e-114
Alignment   gi|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].     409   e-114
Alignment   gi|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus ...   281   6e-76
Alignment   gi|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus ...   281   6e-76
Alignment   gi|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus ...   273   1e-73
Alignment   gi|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus ...   273   1e-73
Alignment   gi|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].               148   6e-36
Alignment   gi|NP_999043.1| calponin-1 [Sus scrofa].                             140   2e-33
Alignment   gi|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].     130   2e-30

>ref|XP_003357356.1| PREDICTED: transgelin [Sus scrofa].
          Length = 213

 Score =  417 bits (1073), Expect = e-117
 Identities = 205/205 (100%), Positives = 205/205 (100%)
 Frame = +1

Query: 61  LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL 240
           LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL
Sbjct: 9   LPTNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWL 68

Query: 241 KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD 420
           KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD
Sbjct: 69  KNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVD 128

Query: 421 LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG 600
           LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG
Sbjct: 129 LFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIG 188

Query: 601 LQMGSNRGASQAGMTGYGRPRQIIS 675
           LQMGSNRGASQAGMTGYGRPRQIIS
Sbjct: 189 LQMGSNRGASQAGMTGYGRPRQIIS 213


>ref|XP_003129930.1| PREDICTED: transgelin isoform 2 [Sus scrofa].
          Length = 201

 Score =  409 bits (1051), Expect = e-114
 Identities = 201/201 (100%), Positives = 201/201 (100%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201


>ref|XP_003129929.1| PREDICTED: transgelin isoform 1 [Sus scrofa].
          Length = 201

 Score =  409 bits (1051), Expect = e-114
 Identities = 201/201 (100%), Positives = 201/201 (100%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV
Sbjct: 1   MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG
Sbjct: 61  ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 120

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG
Sbjct: 121 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 180

Query: 613 SNRGASQAGMTGYGRPRQIIS 675
           SNRGASQAGMTGYGRPRQIIS
Sbjct: 181 SNRGASQAGMTGYGRPRQIIS 201


>ref|XP_003361052.1| PREDICTED: transgelin-3-like isoform 2 [Sus scrofa].
          Length = 199

 Score =  281 bits (718), Expect = 6e-76
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|XP_003361051.1| PREDICTED: transgelin-3-like isoform 1 [Sus scrofa].
          Length = 199

 Score =  281 bits (718), Expect = 6e-76
 Identities = 135/201 (67%), Positives = 170/201 (84%), Gaps = 1/201 (0%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GPSYG+SREVQ KIE+KYD +LE +LV+WII+QC  D+  P  GR  FQ WL +G 
Sbjct: 1   MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPPGRTHFQKWLMDGT 60

Query: 253 ILSKLVNSLYPDGSKPV-KVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFE 429
           +L KL+NSLYP G +P+ K+ E+   M FKQMEQ++QFLKAAE YGV  TD+FQTVDL+E
Sbjct: 61  VLCKLINSLYPPGQEPIPKISES--KMAFKQMEQISQFLKAAEIYGVRTTDIFQTVDLWE 118

Query: 430 GKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQM 609
           GKD+AAVQRTLMALGS+AVTK+DG YRG+P+WF +KAQ+++R F+E QL++G++VIGLQM
Sbjct: 119 GKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQM 178

Query: 610 GSNRGASQAGMTGYGRPRQII 672
           GSN+GASQAGMTGYG PRQI+
Sbjct: 179 GSNKGASQAGMTGYGMPRQIM 199


>ref|XP_003355153.1| PREDICTED: transgelin-2-like isoform 2 [Sus scrofa].
          Length = 199

 Score =  273 bits (698), Expect = 1e-73
 Identities = 129/200 (64%), Positives = 164/200 (82%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179

Query: 613 SNRGASQAGMTGYGRPRQII 672
           +NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199


>ref|XP_003125720.2| PREDICTED: transgelin-2-like isoform 1 [Sus scrofa].
          Length = 199

 Score =  273 bits (698), Expect = 1e-73
 Identities = 129/200 (64%), Positives = 164/200 (82%)
 Frame = +1

Query: 73  MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGV 252
           MAN+GP+YG+SREVQ KIEK+YD +LE+ L++WI  QC  DVGRP  GR  FQ WLK+G 
Sbjct: 1   MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGT 60

Query: 253 ILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEG 432
           +L +L+N LYP+G  PVK  +   +M FKQMEQ++QFL+AAE YG+  TD+FQTVDL+EG
Sbjct: 61  VLCELINGLYPEGQAPVKKIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEG 119

Query: 433 KDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMG 612
           K++A VQRTLM LG LAV ++DG + GDPNWF KK++E+ R F+++QLQEGK+VIGLQMG
Sbjct: 120 KNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMG 179

Query: 613 SNRGASQAGMTGYGRPRQII 672
           +NRGASQAGMTGYG PRQI+
Sbjct: 180 TNRGASQAGMTGYGMPRQIL 199


>ref|XP_003125950.1| PREDICTED: calponin-3 [Sus scrofa].
          Length = 579

 Score =  148 bits (373), Expect = 6e-36
 Identities = 89/212 (41%), Positives = 122/212 (57%), Gaps = 5/212 (2%)
 Frame = +1

Query: 49  RGTPLP-----TNMANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDR 213
           R  PLP         NKGPSYG+S EV++KI  KYD + EE L  WI    G  +G    
Sbjct: 240 RAQPLPGPRIIMTHFNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGT--- 296

Query: 214 GRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVT 393
               FQ+ LK+G+IL +L+N L P   K V    N  S+ + Q+E +  F+KA + YG+ 
Sbjct: 297 ---SFQLGLKDGIILCELINKLQPGSVKKV----NESSLNWPQLENIGNFIKAIQAYGMK 349

Query: 394 KTDMFQTVDLFEGKDLAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQ 573
             D+F+  DLFE  ++  VQ TL+AL  LA TK    +    +  +K A++  R F E +
Sbjct: 350 PHDIFEANDLFENGNMTQVQTTLVALAGLAKTKG---FHTTIDIGVKYAEKQTRRFDEGK 406

Query: 574 LQEGKHVIGLQMGSNRGASQAGMTGYGRPRQI 669
           L+ G+ VIGLQMG+N+ ASQAGMT YG  R +
Sbjct: 407 LKAGQSVIGLQMGTNKCASQAGMTAYGTRRHL 438


>ref|NP_999043.1| calponin-1 [Sus scrofa].
          Length = 297

 Score =  140 bits (352), Expect = 2e-33
 Identities = 79/197 (40%), Positives = 117/197 (59%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           N+GP+YG+S EV++K+ +KYD + E+ L EWI    G  +G        F   LK+G+IL
Sbjct: 7   NRGPAYGLSAEVKNKLAQKYDHQQEQELREWIEGVTGRRIGN------NFMDGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
            + +N L P   K V    N  +  + Q+E +  F+KA   YGV   D+F+  DLFE  +
Sbjct: 61  CEFINKLQPGSVKKV----NESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
              VQ TL+AL S+A TK +       N  +K A++ +R+F   +L+EG+++IGLQMG+N
Sbjct: 117 HTQVQSTLLALASMAKTKGN-----KVNVGVKYAEKQERKFEPEKLREGRNIIGLQMGTN 171

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ GMT YG  R +
Sbjct: 172 KFASQQGMTAYGTRRHL 188


>ref|XP_003354007.1| PREDICTED: calponin-2 isoform 1 [Sus scrofa].
          Length = 309

 Score =  130 bits (326), Expect = 2e-30
 Identities = 80/197 (40%), Positives = 119/197 (60%)
 Frame = +1

Query: 79  NKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGRPDRGRLGFQVWLKNGVIL 258
           NKGPSYG+S EV++++  KYD + E  L  WI    G  +G PD     FQ  LK+G+IL
Sbjct: 7   NKGPSYGLSAEVKNRLLSKYDPQKEAELRSWIEGLTGLSIG-PD-----FQKGLKDGIIL 60

Query: 259 SKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVTKTDMFQTVDLFEGKD 438
             L+N L P GS P K+  N     + Q+E ++ F+KA   YG+   D+F+  DLFE  +
Sbjct: 61  CTLMNKLQP-GSVP-KI--NRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 116

Query: 439 LAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHKREFTESQLQEGKHVIGLQMGSN 618
           +  VQ +L+AL   A TK     + D +  +K +++ +R F ++ ++ G+ VIGLQMG+N
Sbjct: 117 MTQVQVSLLALAGKAKTKG---LQSDVDIGVKYSEKQQRNFDDATMKAGQCVIGLQMGTN 173

Query: 619 RGASQAGMTGYGRPRQI 669
           + ASQ+GMT YG  R +
Sbjct: 174 KCASQSGMTAYGTRRHL 190


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,427,150
Number of extensions: 948777
Number of successful extensions: 4844
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4799
Number of HSP's successfully gapped: 13
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001878
         (1121 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                        1037   0.0  
Sscrofa_Chr14                                                          84   2e-13
Sscrofa_Chr13                                                          68   1e-08
gb|JH118611.1| Sus scrofa unplaced genomic scaffold ChrUScaf1265       66   4e-08

>Sscrofa_Chr09 
||          Length = 153670197

 Score = 1037 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Plus

                                                                            
Query: 534      gaaagcccaggagcataagagggaattcacagagagccaactgcaggagggaaagcatgt 593
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636122 gaaagcccaggagcataagagggaattcacagagagccaactgcaggagggaaagcatgt 49636181

                                                                            
Query: 594      cattggcctgcagatgggcagcaacagaggggcctcccaggctggcatgacaggctacgg 653
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636182 cattggcctgcagatgggcagcaacagaggggcctcccaggctggcatgacaggctacgg 49636241

                                                                            
Query: 654      acgacctcggcagatcatcagttagagggggtggggcaaccctggccccgcccttgccca 713
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636242 acgacctcggcagatcatcagttagagggggtggggcaaccctggccccgcccttgccca 49636301

                                                                            
Query: 714      gctcgctggctgcagccatcccgcctcgcccgcctcaccctcacccgtgtggctccttca 773
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636302 gctcgctggctgcagccatcccgcctcgcccgcctcaccctcacccgtgtggctccttca 49636361

                                                                            
Query: 774      gccctggccaagcttcgaggctccatcactgagcaaaggtgactgcacttgggcagctcg 833
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636362 gccctggccaagcttcgaggctccatcactgagcaaaggtgactgcacttgggcagctcg 49636421

                                                                            
Query: 834      cccgcacccctcagcccaacttccaaccccaaagcactgctcccccagcccacctcccag 893
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636422 cccgcacccctcagcccaacttccaaccccaaagcactgctcccccagcccacctcccag 49636481

                                                                            
Query: 894      ttcctccattggctctactgtctcctcatcccaggctgagccggggagacatgggctggc 953
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636482 ttcctccattggctctactgtctcctcatcccaggctgagccggggagacatgggctggc 49636541

                                                                            
Query: 954      ggtggcctgggtgtgggcaagtccaccatcctccttggcagcaaatgcctgttgaaagaa 1013
                ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || 
Sbjct: 49636542 ggtggcctgggtgtgggcaagtccaccatcctccttggcagcagatgcctgttgaaggag 49636601

                                                                       
Query: 1014     acccagcccaacctccccccatttttttgctggaatagtttgggggttgaaattc 1068
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49636602 acccagcccaacctccccccatttttttgctggaatagtttgggggttgaaattc 49636656



 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Plus

                                                                            
Query: 61       cttcccaccaacatggccaacaagggtccttcctatggcatgagccgagaagtgcaatcc 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634791 cttcccaccaacatggccaacaagggtccttcctatggcatgagccgagaagtgcaatcc 49634850

                                                                            
Query: 121      aaaattgagaagaagtacgacgaggagctggaggaacggctggtggagtggatcatagtg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634851 aaaattgagaagaagtacgacgaggagctggaggaacggctggtggagtggatcatagtg 49634910

                                                                            
Query: 181      cagtgtggccctgatgtagggcgcccggaccgtgggcgcctgggcttccaggtctggctg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49634911 cagtgtggccctgatgtagggcgcccggaccgtgggcgcctgggcttccaggtctggctg 49634970

                            
Query: 241      aagaatggcgtg 252
                ||||||||||||
Sbjct: 49634971 aagaatggcgtg 49634982



 Score =  357 bits (180), Expect = 8e-96
 Identities = 180/180 (100%)
 Strand = Plus / Plus

                                                                            
Query: 252      gattttgagcaagctggtcaacagcctgtatcctgacggctccaaacccgtgaaggtgcc 311
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635088 gattttgagcaagctggtcaacagcctgtatcctgacggctccaaacccgtgaaggtgcc 49635147

                                                                            
Query: 312      cgagaacccaccctccatggtcttcaagcaaatggagcaggtggctcagttcttaaaggc 371
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635148 cgagaacccaccctccatggtcttcaagcaaatggagcaggtggctcagttcttaaaggc 49635207

                                                                            
Query: 372      cgctgaggactatggcgtcaccaagactgacatgttccagactgttgacctcttcgaagg 431
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635208 cgctgaggactatggcgtcaccaagactgacatgttccagactgttgacctcttcgaagg 49635267



 Score =  210 bits (106), Expect = 1e-51
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                            
Query: 429      aggcaaagacctggccgcggtgcagaggaccctgatggctctgggcagcttggccgtgac 488
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635538 aggcaaagacctggccgcggtgcagaggaccctgatggctctgggcagcttggccgtgac 49635597

                                                              
Query: 489      caagaatgatggacactaccgtggcgatcccaactggtttatgaag 534
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49635598 caagaatgatggacactaccgtggcgatcccaactggtttatgaag 49635643



 Score =  119 bits (60), Expect = 3e-24
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        atcctgtctgtccaagtccagacagagctcactccttccttcgagcctcgaggaacccct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49631168 atcctgtctgtccaagtccagacagagctcactccttccttcgagcctcgaggaacccct 49631227


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 611      gcagcaacagaggggcctcccaggctggcatgacaggctacggacgacctcggcagatca 670
                ||||||||||| |||||||||||||||||||| ||| ||||||| ||||| ||||  |||
Sbjct: 67175546 gcagcaacagatgggcctcccaggctggcatgccagactacggatgaccttggcatttca 67175605

                          
Query: 671      tcagttagag 680
                ||||||||||
Sbjct: 67175606 tcagttagag 67175615


>Sscrofa_Chr13 
||          Length = 218635234

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                             
Query: 592       gtcattggcctgcagatgggcagcaacagaggggcctcccaggctggcatgacaggctac 651
                 ||||| ||||||||||||||||||||||  || ||||||||||| |||||||| || |||
Sbjct: 157489393 gtcatcggcctgcagatgggcagcaacaagggagcctcccaggcaggcatgactgggtac 157489334

                   
Query: 652       gg 653
                 ||
Sbjct: 157489333 gg 157489332



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                      
Query: 448       gtgcagaggaccctgatggctctgggcagcttggccgtgaccaagaatgatgg 500
                 |||||||||||||||||||||||||||||| | || || |||||| |||||||
Sbjct: 157490991 gtgcagaggaccctgatggctctgggcagcgttgcagtcaccaaggatgatgg 157490939


>gb|JH118611.1| Sus scrofa unplaced genomic scaffold ChrUScaf1265
          Length = 87301

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 448   gtgcagaggaccctgatggctctgggcagcttggccgtgaccaagaatgatgg 500
             |||||||||||||||||||||||||||||| | || || |||||| |||||||
Sbjct: 77200 gtgcagaggaccctgatggctctgggcagcgttgcagtcaccaaggatgatgg 77252


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,180,515
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 9
Length of query: 1121
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1100
Effective length of database: 2,808,413,156
Effective search space: 3089254471600
Effective search space used: 3089254471600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)