Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001894
(1812 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ... 640 0.0
Alignment gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con... 640 0.0
Alignment gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ... 213 5e-55
Alignment gi|NP_001093775.1| transforming, acidic coiled-coil containing ... 119 9e-27
Alignment gi|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bo... 50 9e-06
Alignment gi|XP_604226.3| PREDICTED: retinoic acid induced 14-like, parti... 50 9e-06
>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 742
Score = 640 bits (1650), Expect(2) = 0.0
Identities = 377/621 (60%), Positives = 415/621 (66%), Gaps = 29/621 (4%)
Frame = +3
Query: 3 EEPEHDVSKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEAAAPRSVGGTQDEAM 182
EEPEHD SKIS+VRPFSIE++ DV A GT A G PAV G QD
Sbjct: 137 EEPEHDASKISVVRPFSIESRNCGDVPVAPGTAALLG--PAV-----------GVQD--- 180
Query: 183 TEDNVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXXAIGSEFLGSDPALEGT 362
N +T GA+ E D GS PEP G A+GSE + PALE
Sbjct: 181 ---NEAMTAGAALEADPGAGSPRPEPGAGRSRLRKPRPVPLRKKALGSELSEATPALEDM 237
Query: 363 HLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGS 542
RP V E+ G + QK P + E PG D +DSG E E+AR
Sbjct: 238 ---RP--------VGED------GKAGSQKCAPEMMETPG---GDAHDSGAEQPEDARSP 277
Query: 543 PLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAE 722
PL+ + DFAED E ESR +LP+K GRK G+R+ P+V GAK
Sbjct: 278 PLQCEFDFAEDTETVESRRALPRKPGRKPGSRVMPQVH--------GAK----------- 318
Query: 723 DAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTL 902
+PP +P P SP L P G P QH PPL +QGSY FD D DES DPFKP++
Sbjct: 319 -------APP-EPGPGASPTLRPRGGPLARQHSPPLSAQGSYRFDPDLFDESSDPFKPSM 370
Query: 903 TLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI 1082
T DF SPAGN ++EILESPKK KSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI
Sbjct: 371 TFASGDFDSPAGNQVNEILESPKKAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI 430
Query: 1083 SDISNRDGHATDEEKLASTTCGQKPTGAEGKG---------------------------- 1178
SDISNRDGHATDEEKLAST+ QKPTGAEGKG
Sbjct: 431 SDISNRDGHATDEEKLASTSSVQKPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEA 490
Query: 1179 -MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREE 1355
EK+ KMEKDGST+P LE+P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREE
Sbjct: 491 GSEKDPCQKMEKDGSTVPALLESPVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREE 550
Query: 1356 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 1535
IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+ME
Sbjct: 551 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTME 610
Query: 1536 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 1715
KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL
Sbjct: 611 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 670
Query: 1716 KIHAEEKLNKPMKKLLRFEQK 1778
KIHAEEKL+K +++ + K
Sbjct: 671 KIHAEEKLDKANEEIAQVRTK 691
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 691 KAKAESAALHAGL 703
>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 666
Score = 640 bits (1650), Expect(2) = 0.0
Identities = 377/621 (60%), Positives = 415/621 (66%), Gaps = 29/621 (4%)
Frame = +3
Query: 3 EEPEHDVSKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEAAAPRSVGGTQDEAM 182
EEPEHD SKIS+VRPFSIE++ DV A GT A G PAV G QD
Sbjct: 61 EEPEHDASKISVVRPFSIESRNCGDVPVAPGTAALLG--PAV-----------GVQD--- 104
Query: 183 TEDNVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXXAIGSEFLGSDPALEGT 362
N +T GA+ E D GS PEP G A+GSE + PALE
Sbjct: 105 ---NEAMTAGAALEADPGAGSPRPEPGAGRSRLRKPRPVPLRKKALGSELSEATPALEDM 161
Query: 363 HLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGS 542
RP V E+ G + QK P + E PG D +DSG E E+AR
Sbjct: 162 ---RP--------VGED------GKAGSQKCAPEMMETPG---GDAHDSGAEQPEDARSP 201
Query: 543 PLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAE 722
PL+ + DFAED E ESR +LP+K GRK G+R+ P+V GAK
Sbjct: 202 PLQCEFDFAEDTETVESRRALPRKPGRKPGSRVMPQVH--------GAK----------- 242
Query: 723 DAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTL 902
+PP +P P SP L P G P QH PPL +QGSY FD D DES DPFKP++
Sbjct: 243 -------APP-EPGPGASPTLRPRGGPLARQHSPPLSAQGSYRFDPDLFDESSDPFKPSM 294
Query: 903 TLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI 1082
T DF SPAGN ++EILESPKK KSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI
Sbjct: 295 TFASGDFDSPAGNQVNEILESPKKAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI 354
Query: 1083 SDISNRDGHATDEEKLASTTCGQKPTGAEGKG---------------------------- 1178
SDISNRDGHATDEEKLAST+ QKPTGAEGKG
Sbjct: 355 SDISNRDGHATDEEKLASTSSVQKPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEA 414
Query: 1179 -MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREE 1355
EK+ KMEKDGST+P LE+P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREE
Sbjct: 415 GSEKDPCQKMEKDGSTVPALLESPVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREE 474
Query: 1356 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 1535
IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL+ME
Sbjct: 475 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTME 534
Query: 1536 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 1715
KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL
Sbjct: 535 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 594
Query: 1716 KIHAEEKLNKPMKKLLRFEQK 1778
KIHAEEKL+K +++ + K
Sbjct: 595 KIHAEEKLDKANEEIAQVRTK 615
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 615 KAKAESAALHAGL 627
>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
taurus].
Length = 2893
Score = 213 bits (542), Expect = 5e-55
Identities = 106/160 (66%), Positives = 130/160 (81%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2803
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 2804 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 2843
Score = 99.0 bits (245), Expect = 1e-20
Identities = 105/372 (28%), Positives = 148/372 (39%), Gaps = 60/372 (16%)
Frame = +3
Query: 324 SEFLGSDPALEGTHLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER------PGV 485
S L + ALE P+ +C E AE + P G R+Q PP + P
Sbjct: 2129 SSALLEEAALEPAAAPKAACPLD-SEGAEGAVPPASGGGRVQNSPPIGRRTLPPATAPEA 2187
Query: 486 PSSDTNDSGFEVLEEARGSPLRLQLDFAEDVEDAESRESLP---QKLGRKLGNRL----- 641
+DSG + A+G +RL+ D++ED ++++ P +K+G+K ++
Sbjct: 2188 VEVTPSDSGGQEDSPAKGLSVRLEFDYSEDKGSWDTQQETPPPTKKIGKKPVAKMPLRRP 2247
Query: 642 ----TPEVRKDCSGEPVGAKDLELLPGLAAEDAPGLRDSPPLDPHPWESPGLGPFGSPSI 809
TPE + P + D P + + D W+ P PF S S
Sbjct: 2248 KMKKTPEKLDNTPASPTRSP-------AEPNDIPIAKGTYTFDIDKWDDPNFNPFSSTSK 2300
Query: 810 LQHCPPLPSQGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI-----------SEI 956
+Q P LP Q SY FD D DES DPFK S SPA I +
Sbjct: 2301 MQESPKLPQQ-SYNFDPDACDESTDPFKTCSKAPSSPSKSPASFEIPASAIEANGVDGDG 2359
Query: 957 LESP-KKPKSRLITSGCKVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATDEEKL 1130
L P KK K+ L T +VKK +S D SQD A + + + HATDEEKL
Sbjct: 2360 LSKPAKKKKTPLKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISAVVHATDEEKL 2419
Query: 1131 AST----TCGQKPTGAEGKGMEKEMSLK-------------------------MEKDGST 1223
A T TC A+ + + L MEK GS+
Sbjct: 2420 AVTNQKWTCMTVDLEADKQDYPQPSDLSTFVNETKFNSPTEELDYRNSYEIEYMEKIGSS 2479
Query: 1224 MPGTLEAPMEKA 1259
+P +AP ++A
Sbjct: 2480 LPQDNDAPKKQA 2491
>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
Length = 810
Score = 119 bits (298), Expect = 9e-27
Identities = 133/506 (26%), Positives = 212/506 (41%), Gaps = 75/506 (14%)
Frame = +3
Query: 486 PSSDTNDSGFEVLEEARGSPLRLQLDFAEDVEDAESRESLP-QKLGRKLG---------- 632
P + ++ + R P+RL+ DF+ DA + S P +K G+ LG
Sbjct: 283 PGAQGEETCGQAASSLRSGPVRLEFDFS----DATGKRSPPLRKRGKALGLKPPSRRPEA 338
Query: 633 --NRLTPEVRKDC-------------------------SGEP---------VGAKDLELL 704
+ T E K C SGE + L L
Sbjct: 339 RPGKATLEAGKGCELTLRGSDGPSWDKPDDPDCNPAADSGEARPLEHPQSGQATEALSLS 398
Query: 705 PGLAAEDAPGLRD---SPPLDPHPWESPGLG---PFGSPSILQHCPPLPSQGSYCFDQDD 866
++D PG R +P W + LG P SPS P P+ + ++
Sbjct: 399 RQACSDDTPGTRAPARTPGAAGEGWTTGSLGGSAPLSSPS--SEPPTAPTNPTPPTERGP 456
Query: 867 IDESLDPFKPTLTLTGSDFVSPAGNHISEILESPKKPK--SRLITSGCKVKKYEAQSLAL 1040
+PTL L G F PA E+L + + + K QSL L
Sbjct: 457 --------EPTLDLNGEQFRDPA-----EVLGAGAELDYLEQFGAPSFKESALRKQSLYL 503
Query: 1041 --DGCSQDEGAVISQISD-------ISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEM 1193
D QD ++ S + + A++E T G G + ++K
Sbjct: 504 NFDPLLQDSPQGLTPSSSGRPRGLPVPSAGPLASEESPGLMQTAGGFSLGLRARSVDKPS 563
Query: 1194 S--------LKMEKDGST---MPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLT 1340
S L ++ G+ +PG AP + P + +D + S+ D + +
Sbjct: 564 SGSPPEAQLLDLDFPGAPGIPIPGL--APCDLGPGAPLLPVGPIVDVLQYSQKDLDSAV- 620
Query: 1341 LIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQ 1520
E KE E + K ++ +LEM KI+ +E T+ Q++E+ Q+ ++ Q
Sbjct: 621 ----EATQKENEV--LRGKCAALQERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQ 674
Query: 1521 QLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQ 1700
++ EK Q ADL+S+E+S SDLF+R+E K V+EG++ NEE+LKKC +DY+ RV++E Q
Sbjct: 675 KVLKEKAQLTADLHSMEKSFSDLFKRFEKQKEVIEGYRTNEESLKKCVEDYIERVEKEAQ 734
Query: 1701 RYQALKIHAEEKLNKPMKKLLRFEQK 1778
+YQALK AEEKL + +++ + K
Sbjct: 735 KYQALKAQAEEKLRQASEEIAQVRSK 760
>ref|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bos taurus].
Length = 951
Score = 49.7 bits (117), Expect = 9e-06
Identities = 58/309 (18%), Positives = 135/309 (43%), Gaps = 3/309 (0%)
Frame = +3
Query: 858 QDDIDESLDPFKPTLTLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLA 1037
Q++I + D K +T D ++ +++ K S L + Y+
Sbjct: 576 QEEITKLKDTLKNQMTQEAGDEAEDMKEAMNRMIDELNKQVSELS------QLYKEAQAE 629
Query: 1038 LDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDG 1217
L+ + + + D++ H + EKL T + E K K+ +
Sbjct: 630 LEDYRKRKS-----LEDVTAEYIHKAEHEKLMQVTNVSRAKAEEALSEMKSQYSKVLNEL 684
Query: 1218 STMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKK 1397
+ + ++A E + VS+ + + + + ++ ++E + +KE E + +K+
Sbjct: 685 TQLKQLVDAQKENS-VSIT-EHLQVITTLRTTAKEMEGKISSLKEHLASKEGEVAKLEKQ 742
Query: 1398 YEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERS 1577
E + + + + YEK + + E S+ + K + EKE+A +++ +
Sbjct: 743 LLEEKAAMTDAMVPRSAYEKLQSSL---ESEVSVLASKLRDSVK-EKEKAHSEVAQIRSE 798
Query: 1578 LSDLFRRYENLKGVLEGFKKN-EEALKKC--AQDYLARVKQEEQRYQALKIHAEEKLNKP 1748
+S + R EN++ +L+ ++ E L+KC AQ+ LA +K+ + L+ ++K+N+
Sbjct: 799 VSQMKREKENIQTLLKSKEQEVNELLQKCQHAQEELAEMKRHSESSSKLEEDKDKKINEM 858
Query: 1749 MKKLLRFEQ 1775
K++ + ++
Sbjct: 859 SKEVTKLKE 867
>ref|XP_604226.3| PREDICTED: retinoic acid induced 14-like, partial [Bos taurus].
Length = 939
Score = 49.7 bits (117), Expect = 9e-06
Identities = 58/309 (18%), Positives = 135/309 (43%), Gaps = 3/309 (0%)
Frame = +3
Query: 858 QDDIDESLDPFKPTLTLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLA 1037
Q++I + D K +T D ++ +++ K S L + Y+
Sbjct: 564 QEEITKLKDTLKNQMTQEAGDEAEDMKEAMNRMIDELNKQVSELS------QLYKEAQAE 617
Query: 1038 LDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDG 1217
L+ + + + D++ H + EKL T + E K K+ +
Sbjct: 618 LEDYRKRKS-----LEDVTAEYIHKAEHEKLMQVTNVSRAKAEEALSEMKSQYSKVLNEL 672
Query: 1218 STMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKK 1397
+ + ++A E + VS+ + + + + ++ ++E + +KE E + +K+
Sbjct: 673 TQLKQLVDAQKENS-VSIT-EHLQVITTLRTTAKEMEGKISSLKEHLASKEGEVAKLEKQ 730
Query: 1398 YEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERS 1577
E + + + + YEK + + E S+ + K + EKE+A +++ +
Sbjct: 731 LLEEKAAMTDAMVPRSAYEKLQSSL---ESEVSVLASKLRDSVK-EKEKAHSEVAQIRSE 786
Query: 1578 LSDLFRRYENLKGVLEGFKKN-EEALKKC--AQDYLARVKQEEQRYQALKIHAEEKLNKP 1748
+S + R EN++ +L+ ++ E L+KC AQ+ LA +K+ + L+ ++K+N+
Sbjct: 787 VSQMKREKENIQTLLKSKEQEVNELLQKCQHAQEELAEMKRHSESSSKLEEDKDKKINEM 846
Query: 1749 MKKLLRFEQ 1775
K++ + ++
Sbjct: 847 SKEVTKLKE 855
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 72,906,897
Number of extensions: 2187617
Number of successful extensions: 11098
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 11016
Number of HSP's successfully gapped: 9
Length of query: 604
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 496
Effective length of database: 14,107,870
Effective search space: 6997503520
Effective search space used: 6997503520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001894
(1812 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil... 770 0.0
Alignment gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil... 754 0.0
Alignment gi|XP_856593.1| PREDICTED: similar to transforming acidic coile... 454 e-128
Alignment gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil... 438 e-123
Alignment gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil... 213 5e-55
Alignment gi|XP_536226.2| PREDICTED: similar to transforming acidic coile... 115 1e-25
Alignment gi|XP_852295.1| PREDICTED: similar to Transforming acidic coile... 90 6e-18
>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 1 [Canis familiaris].
Length = 771
Score = 770 bits (1988), Expect(2) = 0.0
Identities = 416/592 (70%), Positives = 463/592 (78%)
Frame = +3
Query: 3 EEPEHDVSKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEAAAPRSVGGTQDEAM 182
EEPEHD S+IS+VRPFSIE K T++ AALGT+AA+G V GEA+ D+AM
Sbjct: 137 EEPEHDSSRISVVRPFSIEAKNSTNIPAALGTRAAYGCVTVVSGEASPSSIPEAILDKAM 196
Query: 183 TEDNVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXXAIGSEFLGSDPALEGT 362
TE +GVTL STE DLK GS+ PEP IG EFL +D ALEGT
Sbjct: 197 TEGTMGVTLETSTESDLKAGSSSPEPVPSRSKLRKPKPVPLRKKTIG-EFLETDIALEGT 255
Query: 363 HLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGS 542
LP+ S +F PDE+ N+S S L +RIQK PP KE PSSDTNDSG E+LEE+R S
Sbjct: 256 PLPQASYQFCPDEMDGNTS-SLLEGARIQKSPPDTKETSSTPSSDTNDSGVELLEESRNS 314
Query: 543 PLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAE 722
PL+L+ DF EDVE+ ESR+ LP+K+GRKLG++L P+V+KD +PVGAK ++ AA+
Sbjct: 315 PLKLEFDFTEDVENIESRKGLPRKVGRKLGSKLPPKVQKDSINKPVGAKGVDQPADPAAD 374
Query: 723 DAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTL 902
AP + S LDP W+SP PFG S LQ+ P L S+GSY FD ES+DPFKPT
Sbjct: 375 SAPPSQASAKLDPSQWDSPNFNPFGGHSTLQNSPLLSSKGSYHFD-----ESMDPFKPTT 429
Query: 903 TLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI 1082
TL SDF S AGNHI+EILESPKK KSRLITSGCKVKKYE QSLALDGCSQDEGAVISQI
Sbjct: 430 TLASSDFCS-AGNHINEILESPKKAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQI 488
Query: 1083 SDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAP 1262
SDISNRDGHATDEEKLAST+ GQK GAE KG+EKEM KMEKDGS M G LE+ MEKAP
Sbjct: 489 SDISNRDGHATDEEKLASTSSGQKSAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAP 548
Query: 1263 VSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIV 1442
VSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIV
Sbjct: 549 VSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIV 608
Query: 1443 AEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVL 1622
AEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVL
Sbjct: 609 AEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVL 668
Query: 1623 EGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
EGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKL+K +++ + K
Sbjct: 669 EGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTK 720
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 720 KAKAESAALHAGL 732
>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 2 [Canis familiaris].
Length = 800
Score = 754 bits (1948), Expect(2) = 0.0
Identities = 416/621 (66%), Positives = 463/621 (74%), Gaps = 29/621 (4%)
Frame = +3
Query: 3 EEPEHDVSKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEAAAPRSVGGTQDEAM 182
EEPEHD S+IS+VRPFSIE K T++ AALGT+AA+G V GEA+ D+AM
Sbjct: 137 EEPEHDSSRISVVRPFSIEAKNSTNIPAALGTRAAYGCVTVVSGEASPSSIPEAILDKAM 196
Query: 183 TEDNVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXXAIGSEFLGSDPALEGT 362
TE +GVTL STE DLK GS+ PEP IG EFL +D ALEGT
Sbjct: 197 TEGTMGVTLETSTESDLKAGSSSPEPVPSRSKLRKPKPVPLRKKTIG-EFLETDIALEGT 255
Query: 363 HLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGS 542
LP+ S +F PDE+ N+S S L +RIQK PP KE PSSDTNDSG E+LEE+R S
Sbjct: 256 PLPQASYQFCPDEMDGNTS-SLLEGARIQKSPPDTKETSSTPSSDTNDSGVELLEESRNS 314
Query: 543 PLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAE 722
PL+L+ DF EDVE+ ESR+ LP+K+GRKLG++L P+V+KD +PVGAK ++ AA+
Sbjct: 315 PLKLEFDFTEDVENIESRKGLPRKVGRKLGSKLPPKVQKDSINKPVGAKGVDQPADPAAD 374
Query: 723 DAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTL 902
AP + S LDP W+SP PFG S LQ+ P L S+GSY FD ES+DPFKPT
Sbjct: 375 SAPPSQASAKLDPSQWDSPNFNPFGGHSTLQNSPLLSSKGSYHFD-----ESMDPFKPTT 429
Query: 903 TLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQI 1082
TL SDF S AGNHI+EILESPKK KSRLITSGCKVKKYE QSLALDGCSQDEGAVISQI
Sbjct: 430 TLASSDFCS-AGNHINEILESPKKAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQI 488
Query: 1083 SDISNRDGHATDEEKLASTTCGQKPTGAEGKG---------------------------- 1178
SDISNRDGHATDEEKLAST+ GQK GAE KG
Sbjct: 489 SDISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEA 548
Query: 1179 -MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREE 1355
+EKEM KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREE
Sbjct: 549 GIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREE 608
Query: 1356 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSME 1535
IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+ME
Sbjct: 609 IITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTME 668
Query: 1536 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 1715
KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL
Sbjct: 669 KEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQAL 728
Query: 1716 KIHAEEKLNKPMKKLLRFEQK 1778
KIHAEEKL+K +++ + K
Sbjct: 729 KIHAEEKLDKANEEIAQVRTK 749
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 749 KAKAESAALHAGL 761
>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
protein 1 short isoform isoform 3 [Canis familiaris].
Length = 366
Score = 454 bits (1167), Expect(2) = e-128
Identities = 236/273 (86%), Positives = 247/273 (90%)
Frame = +3
Query: 960 ESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST 1139
+S + KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST
Sbjct: 43 DSQAETKSLSFRSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST 102
Query: 1140 TCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSES 1319
+ GQK GAE KG+EKEM KMEKDGS M G LE+ MEKAPVSVAC GESPLDGICLSES
Sbjct: 103 SSGQKSAGAEVKGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGESPLDGICLSES 162
Query: 1320 DKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASM 1499
DKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SM
Sbjct: 163 DKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSM 222
Query: 1500 TSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLA 1679
TSQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLA
Sbjct: 223 TSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLA 282
Query: 1680 RVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
RVKQEEQRYQALKIHAEEKL+K +++ + K
Sbjct: 283 RVKQEEQRYQALKIHAEEKLDKANEEIAQVRTK 315
Score = 25.4 bits (54), Expect(2) = e-128
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 315 KAKAESAALHAGL 327
>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 4 [Canis familiaris].
Length = 395
Score = 438 bits (1127), Expect(2) = e-123
Identities = 236/302 (78%), Positives = 247/302 (81%), Gaps = 29/302 (9%)
Frame = +3
Query: 960 ESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST 1139
+S + KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST
Sbjct: 43 DSQAETKSLSFRSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST 102
Query: 1140 TCGQKPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPG 1232
+ GQK GAE KG +EKEM KMEKDGS M G
Sbjct: 103 SSGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTG 162
Query: 1233 TLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETR 1412
LE+ MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETR
Sbjct: 163 LLESSMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETR 222
Query: 1413 QEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLF 1592
QEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLF
Sbjct: 223 QEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLF 282
Query: 1593 RRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFE 1772
RRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKL+K +++ +
Sbjct: 283 RRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVR 342
Query: 1773 QK 1778
K
Sbjct: 343 TK 344
Score = 25.4 bits (54), Expect(2) = e-123
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 344 KAKAESAALHAGL 356
>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 2 isoform a [Canis familiaris].
Length = 2885
Score = 213 bits (542), Expect = 5e-55
Identities = 106/160 (66%), Positives = 130/160 (81%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2795
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 2796 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 2835
Score = 99.4 bits (246), Expect = 1e-20
Identities = 103/373 (27%), Positives = 151/373 (40%), Gaps = 65/373 (17%)
Frame = +3
Query: 336 GSDPA------LEGTHLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKE------RP 479
GS PA L+ +P+ C E AE + P G R+Q PP ++ P
Sbjct: 2120 GSGPAVSEEAPLDLAAVPKAPCPLD-SEGAEGAIPLASGSGRVQNSPPVGRKPSPLATAP 2178
Query: 480 GVPSSDTNDSGFEVLEEARGSPLRLQLDFAEDVEDAESRESLP---QKLGRKLGNRL--- 641
++SG + +G +RL+ D++ED ++++ P +KLG+K ++
Sbjct: 2179 EAAEVTPSESGGQEDSPVKGLSVRLEFDYSEDKGSWDTQQENPPPTKKLGKKPVAKMPLR 2238
Query: 642 ------TPEVRKDCSGEPVGAKDLELLPGLAAEDAPGLRDSPPLDPHPWESPGLGPFGSP 803
TPE + P + D D P + + D W+ P PF S
Sbjct: 2239 RPKMKKTPEKLDNTPASPTRSPD-------EPNDIPMAKGTYTFDIDKWDDPNFNPFSST 2291
Query: 804 SILQHCPPLPSQGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI-----------S 950
S +Q P LP Q SY FD D DES+DPFK + S SPA I
Sbjct: 2292 SKMQESPKLPQQ-SYNFDPDACDESIDPFKTSSKTPSSPSKSPASFEIPASAIEANGVDG 2350
Query: 951 EILESP-KKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEK 1127
+ L P KK K+ L T +VK+ +S D SQD + + + + HATDEEK
Sbjct: 2351 DGLNKPAKKKKTPLKTDTFRVKRSPKRSPLSDPPSQDPTPAATPETPVISAVVHATDEEK 2410
Query: 1128 LAST----TCGQKPTGAEGKGMEKEMSLK-------------------------MEKDGS 1220
LA T TC A+ + + L MEK GS
Sbjct: 2411 LAVTNQKWTCVTVDLEADKQDYPQPSDLSTFVNDTKFNSPTEELDYRNSYEIEYMEKIGS 2470
Query: 1221 TMPGTLEAPMEKA 1259
++P +AP ++A
Sbjct: 2471 SLPQDDDAPKKQA 2483
>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
familiaris].
Length = 945
Score = 115 bits (288), Expect = 1e-25
Identities = 67/189 (35%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
Frame = +3
Query: 1230 GTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK 1391
G +AP ++ P GG S +D + ++ D A + +REE + +
Sbjct: 714 GAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE-------NSLLR 766
Query: 1392 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 1571
+ + + LEM KI+ +E + Q +E+ Q+ ++ Q++ EK+Q ADL+S+E
Sbjct: 767 SRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAADLSSME 826
Query: 1572 RSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNKPM 1751
+S SDLF+R+E K V+EG+ NEE+LKKC +DY+ R+++E QRYQALK HAEEKL
Sbjct: 827 KSFSDLFKRFEKQKEVIEGYHTNEESLKKCVEDYIVRIEKEGQRYQALKAHAEEKLKLAS 886
Query: 1752 KKLLRFEQK 1778
+++ + K
Sbjct: 887 EEIAQVRSK 895
>ref|XP_852295.1| PREDICTED: similar to Transforming acidic coiled-coil-containing
protein 3 (ERIC-1) [Canis familiaris].
Length = 450
Score = 90.1 bits (222), Expect = 6e-18
Identities = 42/87 (48%), Positives = 63/87 (72%)
Frame = +3
Query: 1518 QQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEE 1697
Q++ EK+Q A L+S+E+S SDLF+R+E K V++G+ NEE+LKKC +DY+ R+++E
Sbjct: 314 QKILKEKDQLAAYLSSMEKSFSDLFKRFEKQKEVIQGYHTNEESLKKCVEDYIVRIEKEG 373
Query: 1698 QRYQALKIHAEEKLNKPMKKLLRFEQK 1778
Q YQALK HAEEKL +++ + K
Sbjct: 374 QWYQALKAHAEEKLKLASEEIAQVRGK 400
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,303,760
Number of extensions: 2264819
Number of successful extensions: 12085
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 12001
Number of HSP's successfully gapped: 12
Length of query: 604
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 495
Effective length of database: 15,240,880
Effective search space: 7544235600
Effective search space used: 7544235600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001894
(1812 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006274.2| transforming acidic coiled-coil-containing prot... 763 0.0
Alignment gi|NP_001139688.1| transforming acidic coiled-coil-containing p... 692 0.0
Alignment gi|NP_001116296.1| transforming acidic coiled-coil-containing p... 432 e-121
Alignment gi|NP_996744.2| transforming acidic coiled-coil-containing prot... 212 1e-54
Alignment gi|NP_996743.1| transforming acidic coiled-coil-containing prot... 212 1e-54
Alignment gi|NP_996742.1| transforming acidic coiled-coil-containing prot... 212 1e-54
Alignment gi|NP_008928.1| transforming acidic coiled-coil-containing prot... 212 1e-54
Alignment gi|NP_006333.1| transforming acidic coiled-coil-containing prot... 134 2e-31
>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
sapiens].
Length = 805
Score = 763 bits (1970), Expect(2) = 0.0
Identities = 413/622 (66%), Positives = 464/622 (74%), Gaps = 30/622 (4%)
Frame = +3
Query: 3 EEPEHDVSKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEAAAPRSVGGTQDEAM 182
EEPEHD SKISIVRPFSIETK TD+ A LGTKAAHG AV G+A QDEAM
Sbjct: 137 EEPEHDFSKISIVRPFSIETKDSTDISAVLGTKAAHGCVTAVSGKALPSSPPDALQDEAM 196
Query: 183 TEDNVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXX-AIGSEFLGSDPALEG 359
TE ++GVTL AS E DLK G++ PE AIG EF ++ A+EG
Sbjct: 197 TEGSMGVTLEASAEADLKAGNSCPELVPSRRSKLRKPKPVPLRKKAIGGEFSDTNAAVEG 256
Query: 360 THLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARG 539
T LP+ S F P+E+ EN+SP LG +R QK PP +KE PG SSDTNDSG E+ EE+R
Sbjct: 257 TPLPKASYHFSPEELDENTSPL-LGDARFQKSPPDLKETPGTLSSDTNDSGVELGEESRS 315
Query: 540 SPLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAA 719
SPL+L+ DF ED + E+R++LP+KLGRKLG+ LTP+++KD + G LE A
Sbjct: 316 SPLKLEFDFTEDTGNIEARKALPRKLGRKLGSTLTPKIQKDGISKSAG---LEQPTDPVA 372
Query: 720 EDAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPT 899
D P + S DP WESP PFGS S+LQ+ PPL S+GSY FD D+ DES+DPFKPT
Sbjct: 373 RDGPLSQTSSKPDPSQWESPSFNPFGSHSVLQNSPPLSSEGSYHFDPDNFDESMDPFKPT 432
Query: 900 LTLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQ 1079
TLT SDF SP GNH++EILESPKK KSRLITSGCKVKK+E QSLALD CS+DEGAVISQ
Sbjct: 433 TTLTSSDFCSPTGNHVNEILESPKKAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQ 492
Query: 1080 ISDISNRDGHATDEEKLASTTCGQKPTGAEGKG--------------------------- 1178
ISDISNRDGHATDEEKLAST+CGQK GAE KG
Sbjct: 493 ISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSE 552
Query: 1179 --MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIRE 1352
+EKE KME+DGST+ G LE+ EKAPVSV+CGGESPLDGICLSESDKTAVLTLIRE
Sbjct: 553 AGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIRE 612
Query: 1353 EIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSM 1532
EIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+M
Sbjct: 613 EIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTM 672
Query: 1533 EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA 1712
EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA
Sbjct: 673 EKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQA 732
Query: 1713 LKIHAEEKLNKPMKKLLRFEQK 1778
LKIHAEEKL+K +++ + K
Sbjct: 733 LKIHAEEKLDKANEEIAQVRTK 754
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 754 KAKAESAALHAGL 766
>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
sapiens].
Length = 610
Score = 692 bits (1787), Expect(2) = 0.0
Identities = 374/563 (66%), Positives = 423/563 (75%), Gaps = 30/563 (5%)
Frame = +3
Query: 180 MTEDNVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXX-AIGSEFLGSDPALE 356
MTE ++GVTL AS E DLK G++ PE AIG EF ++ A+E
Sbjct: 1 MTEGSMGVTLEASAEADLKAGNSCPELVPSRRSKLRKPKPVPLRKKAIGGEFSDTNAAVE 60
Query: 357 GTHLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEAR 536
GT LP+ S F P+E+ EN+SP LG +R QK PP +KE PG SSDTNDSG E+ EE+R
Sbjct: 61 GTPLPKASYHFSPEELDENTSPL-LGDARFQKSPPDLKETPGTLSSDTNDSGVELGEESR 119
Query: 537 GSPLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLA 716
SPL+L+ DF ED + E+R++LP+KLGRKLG+ LTP+++KD + G LE
Sbjct: 120 SSPLKLEFDFTEDTGNIEARKALPRKLGRKLGSTLTPKIQKDGISKSAG---LEQPTDPV 176
Query: 717 AEDAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKP 896
A D P + S DP WESP PFGS S+LQ+ PPL S+GSY FD D+ DES+DPFKP
Sbjct: 177 ARDGPLSQTSSKPDPSQWESPSFNPFGSHSVLQNSPPLSSEGSYHFDPDNFDESMDPFKP 236
Query: 897 TLTLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVIS 1076
T TLT SDF SP GNH++EILESPKK KSRLITSGCKVKK+E QSLALD CS+DEGAVIS
Sbjct: 237 TTTLTSSDFCSPTGNHVNEILESPKKAKSRLITSGCKVKKHETQSLALDACSRDEGAVIS 296
Query: 1077 QISDISNRDGHATDEEKLASTTCGQKPTGAEGKG-------------------------- 1178
QISDISNRDGHATDEEKLAST+CGQK GAE KG
Sbjct: 297 QISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSS 356
Query: 1179 ---MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIR 1349
+EKE KME+DGST+ G LE+ EKAPVSV+CGGESPLDGICLSESDKTAVLTLIR
Sbjct: 357 EAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIR 416
Query: 1350 EEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLS 1529
EEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+
Sbjct: 417 EEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLT 476
Query: 1530 MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQ 1709
MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQ
Sbjct: 477 MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQ 536
Query: 1710 ALKIHAEEKLNKPMKKLLRFEQK 1778
ALKIHAEEKL+K +++ + K
Sbjct: 537 ALKIHAEEKLDKANEEIAQVRTK 559
Score = 25.4 bits (54), Expect(2) = 0.0
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 559 KAKAESAALHAGL 571
>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2 [Homo
sapiens].
Length = 395
Score = 432 bits (1110), Expect(2) = e-121
Identities = 231/302 (76%), Positives = 247/302 (81%), Gaps = 29/302 (9%)
Frame = +3
Query: 960 ESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST 1139
+S + KS SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST
Sbjct: 43 DSQAETKSLSFRSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLAST 102
Query: 1140 TCGQKPTGAEGKG-----------------------------MEKEMSLKMEKDGSTMPG 1232
+CGQK GAE KG +EKE KME+DGST+ G
Sbjct: 103 SCGQKSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLG 162
Query: 1233 TLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETR 1412
LE+ EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETR
Sbjct: 163 LLESSAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETR 222
Query: 1413 QEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLF 1592
QEVLEMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL+MEKEQALADLNSVERSLSDLF
Sbjct: 223 QEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLF 282
Query: 1593 RRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFE 1772
RRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKL+K +++ +
Sbjct: 283 RRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVR 342
Query: 1773 QK 1778
K
Sbjct: 343 TK 344
Score = 25.4 bits (54), Expect(2) = e-121
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 344 KAKAESAALHAGL 356
>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
sapiens].
Length = 2948
Score = 212 bits (539), Expect = 1e-54
Identities = 105/160 (65%), Positives = 130/160 (81%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 2858
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 2859 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 2898
Score = 97.4 bits (241), Expect = 4e-20
Identities = 110/376 (29%), Positives = 153/376 (40%), Gaps = 68/376 (18%)
Frame = +3
Query: 336 GSDPAL-EGTHL-----PRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER------P 479
G PAL E T L P+ +C E AE P G R+Q PP ++ P
Sbjct: 2182 GPSPALLEETPLEPAVGPKAACPLD-SESAEGVVPPASGGGRVQNSPPVGRKTLPLTTAP 2240
Query: 480 GVPSSDTNDSGFEVLEEARGSPLRLQLDFAEDVEDAESRESLP---QKLGRKLGNRL--- 641
+DSG + A+G +RL+ D++ED ++++ P +K+G+K ++
Sbjct: 2241 EAGEVTPSDSGGQEDSPAKGLSVRLEFDYSEDKSSWDNQQENPPPTKKIGKKPVAKMPLR 2300
Query: 642 ------TPEVRKDCSGEPVGAKDLELLPGLAAE--DAPGLRDSPPLDPHPWESPGLGPFG 797
TPE + P P AE D P + + D W+ P PF
Sbjct: 2301 RPKMKKTPEKLDNTPASP---------PRSPAEPNDIPIAKGTYTFDIDKWDDPNFNPFS 2351
Query: 798 SPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI---------- 947
S S +Q P LP Q SY FD D DES+DPFK + S SPA I
Sbjct: 2352 STSKMQESPKLPQQ-SYNFDPDTCDESVDPFKTSSKTPSSPSKSPASFEIPASAMEANGV 2410
Query: 948 -SEILESP-KKPKSRLITSGCKVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATD 1118
+ L P KK K+ L T +VKK +S D SQD A + + + HATD
Sbjct: 2411 DGDGLNKPAKKKKTPLKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISAVVHATD 2470
Query: 1119 EEKLAST----TCGQKPTGAEGKGMEKEMSLK-------------------------MEK 1211
EEKLA T TC A+ + + L MEK
Sbjct: 2471 EEKLAVTNQKWTCMTVDLEADKQDYPQPSDLSTFVNETKFSSPTEELDYRNSYEIEYMEK 2530
Query: 1212 DGSTMPGTLEAPMEKA 1259
GS++P +AP ++A
Sbjct: 2531 IGSSLPQDDDAPKKQA 2546
>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
sapiens].
Length = 1094
Score = 212 bits (539), Expect = 1e-54
Identities = 105/160 (65%), Positives = 130/160 (81%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 945 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 1004
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 1005 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 1044
Score = 97.4 bits (241), Expect = 4e-20
Identities = 110/376 (29%), Positives = 153/376 (40%), Gaps = 68/376 (18%)
Frame = +3
Query: 336 GSDPAL-EGTHL-----PRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER------P 479
G PAL E T L P+ +C E AE P G R+Q PP ++ P
Sbjct: 328 GPSPALLEETPLEPAVGPKAACPLD-SESAEGVVPPASGGGRVQNSPPVGRKTLPLTTAP 386
Query: 480 GVPSSDTNDSGFEVLEEARGSPLRLQLDFAEDVEDAESRESLP---QKLGRKLGNRL--- 641
+DSG + A+G +RL+ D++ED ++++ P +K+G+K ++
Sbjct: 387 EAGEVTPSDSGGQEDSPAKGLSVRLEFDYSEDKSSWDNQQENPPPTKKIGKKPVAKMPLR 446
Query: 642 ------TPEVRKDCSGEPVGAKDLELLPGLAAE--DAPGLRDSPPLDPHPWESPGLGPFG 797
TPE + P P AE D P + + D W+ P PF
Sbjct: 447 RPKMKKTPEKLDNTPASP---------PRSPAEPNDIPIAKGTYTFDIDKWDDPNFNPFS 497
Query: 798 SPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI---------- 947
S S +Q P LP Q SY FD D DES+DPFK + S SPA I
Sbjct: 498 STSKMQESPKLPQQ-SYNFDPDTCDESVDPFKTSSKTPSSPSKSPASFEIPASAMEANGV 556
Query: 948 -SEILESP-KKPKSRLITSGCKVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATD 1118
+ L P KK K+ L T +VKK +S D SQD A + + + HATD
Sbjct: 557 DGDGLNKPAKKKKTPLKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISAVVHATD 616
Query: 1119 EEKLAST----TCGQKPTGAEGKGMEKEMSLK-------------------------MEK 1211
EEKLA T TC A+ + + L MEK
Sbjct: 617 EEKLAVTNQKWTCMTVDLEADKQDYPQPSDLSTFVNETKFSSPTEELDYRNSYEIEYMEK 676
Query: 1212 DGSTMPGTLEAPMEKA 1259
GS++P +AP ++A
Sbjct: 677 IGSSLPQDDDAPKKQA 692
>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
sapiens].
Length = 996
Score = 212 bits (539), Expect = 1e-54
Identities = 105/160 (65%), Positives = 130/160 (81%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 847 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 906
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 907 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 946
Score = 97.4 bits (241), Expect = 4e-20
Identities = 110/376 (29%), Positives = 153/376 (40%), Gaps = 68/376 (18%)
Frame = +3
Query: 336 GSDPAL-EGTHL-----PRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER------P 479
G PAL E T L P+ +C E AE P G R+Q PP ++ P
Sbjct: 260 GPSPALLEETPLEPAVGPKAACPLD-SESAEGVVPPASGGGRVQNSPPVGRKTLPLTTAP 318
Query: 480 GVPSSDTNDSGFEVLEEARGSPLRLQLDFAEDVEDAESRESLP---QKLGRKLGNRL--- 641
+DSG + A+G +RL+ D++ED ++++ P +K+G+K ++
Sbjct: 319 EAGEVTPSDSGGQEDSPAKGLSVRLEFDYSEDKSSWDNQQENPPPTKKIGKKPVAKMPLR 378
Query: 642 ------TPEVRKDCSGEPVGAKDLELLPGLAAE--DAPGLRDSPPLDPHPWESPGLGPFG 797
TPE + P P AE D P + + D W+ P PF
Sbjct: 379 RPKMKKTPEKLDNTPASP---------PRSPAEPNDIPIAKGTYTFDIDKWDDPNFNPFS 429
Query: 798 SPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI---------- 947
S S +Q P LP Q SY FD D DES+DPFK + S SPA I
Sbjct: 430 STSKMQESPKLPQQ-SYNFDPDTCDESVDPFKTSSKTPSSPSKSPASFEIPASAMEANGV 488
Query: 948 -SEILESP-KKPKSRLITSGCKVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATD 1118
+ L P KK K+ L T +VKK +S D SQD A + + + HATD
Sbjct: 489 DGDGLNKPAKKKKTPLKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISAVVHATD 548
Query: 1119 EEKLAST----TCGQKPTGAEGKGMEKEMSLK-------------------------MEK 1211
EEKLA T TC A+ + + L MEK
Sbjct: 549 EEKLAVTNQKWTCMTVDLEADKQDYPQPSDLSTFVNETKFSSPTEELDYRNSYEIEYMEK 608
Query: 1212 DGSTMPGTLEAPMEKA 1259
GS++P +AP ++A
Sbjct: 609 IGSSLPQDDDAPKKQA 624
>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
sapiens].
Length = 1026
Score = 212 bits (539), Expect = 1e-54
Identities = 105/160 (65%), Positives = 130/160 (81%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LK+
Sbjct: 877 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKR 936
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 937 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 976
Score = 97.4 bits (241), Expect = 4e-20
Identities = 110/376 (29%), Positives = 153/376 (40%), Gaps = 68/376 (18%)
Frame = +3
Query: 336 GSDPAL-EGTHL-----PRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER------P 479
G PAL E T L P+ +C E AE P G R+Q PP ++ P
Sbjct: 260 GPSPALLEETPLEPAVGPKAACPLD-SESAEGVVPPASGGGRVQNSPPVGRKTLPLTTAP 318
Query: 480 GVPSSDTNDSGFEVLEEARGSPLRLQLDFAEDVEDAESRESLP---QKLGRKLGNRL--- 641
+DSG + A+G +RL+ D++ED ++++ P +K+G+K ++
Sbjct: 319 EAGEVTPSDSGGQEDSPAKGLSVRLEFDYSEDKSSWDNQQENPPPTKKIGKKPVAKMPLR 378
Query: 642 ------TPEVRKDCSGEPVGAKDLELLPGLAAE--DAPGLRDSPPLDPHPWESPGLGPFG 797
TPE + P P AE D P + + D W+ P PF
Sbjct: 379 RPKMKKTPEKLDNTPASP---------PRSPAEPNDIPIAKGTYTFDIDKWDDPNFNPFS 429
Query: 798 SPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI---------- 947
S S +Q P LP Q SY FD D DES+DPFK + S SPA I
Sbjct: 430 STSKMQESPKLPQQ-SYNFDPDTCDESVDPFKTSSKTPSSPSKSPASFEIPASAMEANGV 488
Query: 948 -SEILESP-KKPKSRLITSGCKVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATD 1118
+ L P KK K+ L T +VKK +S D SQD A + + + HATD
Sbjct: 489 DGDGLNKPAKKKKTPLKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISAVVHATD 548
Query: 1119 EEKLAST----TCGQKPTGAEGKGMEKEMSLK-------------------------MEK 1211
EEKLA T TC A+ + + L MEK
Sbjct: 549 EEKLAVTNQKWTCMTVDLEADKQDYPQPSDLSTFVNETKFSSPTEELDYRNSYEIEYMEK 608
Query: 1212 DGSTMPGTLEAPMEKA 1259
GS++P +AP ++A
Sbjct: 609 IGSSLPQDDDAPKKQA 624
>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
Length = 838
Score = 134 bits (338), Expect = 2e-31
Identities = 76/189 (40%), Positives = 111/189 (58%), Gaps = 6/189 (3%)
Frame = +3
Query: 1230 GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 1391
G L+ P+ P V G PL D + S+ D AV+ +EE E +
Sbjct: 607 GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659
Query: 1392 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVE 1571
+ EE + LE+ KI+ +E+ + Q +E+ Q+ S+ Q++ EK+Q DLNS+E
Sbjct: 660 SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719
Query: 1572 RSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNKPM 1751
+S SDLF+R+E K V+EG++KNEE+LKKC +DYLAR+ QE QRYQALK HAEEKL
Sbjct: 720 KSFSDLFKRFEKQKEVIEGYRKNEESLKKCVEDYLARITQEGQRYQALKAHAEEKLQLAN 779
Query: 1752 KKLLRFEQK 1778
+++ + K
Sbjct: 780 EEIAQVRSK 788
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 74,515,230
Number of extensions: 2200113
Number of successful extensions: 10991
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 10867
Number of HSP's successfully gapped: 15
Length of query: 604
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 496
Effective length of database: 14,737,052
Effective search space: 7309577792
Effective search space used: 7309577792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001894
(1812 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_796063.3| transforming acidic coiled-coil-containing prot... 652 0.0
Alignment gi|NP_955355.1| transforming acidic coiled-coil-containing prot... 422 e-119
Alignment gi|NP_996738.2| transforming acidic coiled-coil-containing prot... 208 1e-53
Alignment gi|NP_067289.2| transforming acidic coiled-coil-containing prot... 208 1e-53
Alignment gi|NP_001004468.1| transforming acidic coiled-coil-containing p... 208 1e-53
Alignment gi|NP_001035525.1| transforming acidic coiled-coil-containing p... 118 1e-26
>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
[Mus musculus].
Length = 776
Score = 652 bits (1682), Expect(2) = 0.0
Identities = 366/592 (61%), Positives = 429/592 (72%), Gaps = 3/592 (0%)
Frame = +3
Query: 12 EHDVSKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEAAAPRSVGGTQDEAMTED 191
EHDVSKIS+VRPFSIET+ TD AALGT AAHG P + G A + TQDE + +
Sbjct: 141 EHDVSKISVVRPFSIETRNCTDDPAALGTAAAHGCVPVLPGMALPSTTPEATQDEPVMDR 200
Query: 192 NVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXXAIGSEFLGSDPALEGTHLP 371
+GVTL A TE LKTG PEP V + E + +EG+ LP
Sbjct: 201 GMGVTLEAFTEASLKTGGPCPEP-VASRSKLRKPKPVSLRKKMAPE---PEMLMEGSPLP 256
Query: 372 RPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGSPLR 551
+ S + PD + +N++PS L S Q+ P +KE GV S+DT+DSG E+ +R PL+
Sbjct: 257 KASSPWLPDGLDQNANPSVLRGSGAQRSPLNLKETAGVLSNDTSDSGVELQGGSRDPPLQ 316
Query: 552 LQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAEDAP 731
L+ DF ED E+ + R +LP++ GRK N+L P +RKD +PVG +E +DA
Sbjct: 317 LEDDFTEDGENVKIRSALPKQSGRKPSNKLAPSIRKDGVSKPVG---VEQPSDPTVQDAL 373
Query: 732 GLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDI--DESLDPFKPTLT 905
+ SP LDP P FGS ILQ+ PPL S+ S+ FD ++I D+S DP KPT
Sbjct: 374 LDQMSPKLDPSKRSHPPANFFGSGPILQNSPPLSSKCSHHFDPNNINTDDSGDPCKPTPA 433
Query: 906 LTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQIS 1085
LT S F GNH++EIL+SPKK KSRLITSGCKVKKYEAQ L LD CSQDEGAVIS+IS
Sbjct: 434 LTSSGFCPATGNHVNEILDSPKKAKSRLITSGCKVKKYEAQPLDLDACSQDEGAVISKIS 493
Query: 1086 DISNRDGHATDEEKLASTT-CGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAP 1262
+I NRDGHATDEEKLAST+ C QK GA KG+EKE KMEK+ + G LE+ EKAP
Sbjct: 494 EIPNRDGHATDEEKLASTSSCAQKSAGAGVKGIEKETCQKMEKEELAVHGLLESSSEKAP 553
Query: 1263 VSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIV 1442
VSVACGGESPLDGICLSE+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EVLEMRKIV
Sbjct: 554 VSVACGGESPLDGICLSEADKTAVLTLIREEIITKEIEANEWKKKYEETREEVLEMRKIV 613
Query: 1443 AEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVL 1622
AEYEKTIAQMIEDEQR SM+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVL
Sbjct: 614 AEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVL 673
Query: 1623 EGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
EGFKKNEEALKKCAQDYLARVKQEEQRYQALK+HAEEKL++ +++ + K
Sbjct: 674 EGFKKNEEALKKCAQDYLARVKQEEQRYQALKVHAEEKLDRANEEIAQVRSK 725
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +1
Query: 1771 NKSQAESAALHAGL 1812
+K++AESAALHAGL
Sbjct: 724 SKAKAESAALHAGL 737
>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
[Mus musculus].
Length = 368
Score = 422 bits (1086), Expect(2) = e-119
Identities = 220/274 (80%), Positives = 240/274 (87%), Gaps = 1/274 (0%)
Frame = +3
Query: 960 ESPKKPKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST 1139
+S + KS SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST
Sbjct: 44 DSQAETKSLSFRSGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLAST 103
Query: 1140 T-CGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSE 1316
+ C QK GA KG+EKE KMEK+ + G LE+ EKAPVSVACGGESPLDGICLSE
Sbjct: 104 SSCAQKSAGAGVKGIEKETCQKMEKEELAVHGLLESSSEKAPVSVACGGESPLDGICLSE 163
Query: 1317 SDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRAS 1496
+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EVLEMRKIVAEYEKTIAQMIEDEQR S
Sbjct: 164 ADKTAVLTLIREEIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKTIAQMIEDEQRTS 223
Query: 1497 MTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYL 1676
M+SQKSFQQL+MEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYL
Sbjct: 224 MSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYL 283
Query: 1677 ARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
ARVKQEEQRYQALK+HAEEKL++ +++ + K
Sbjct: 284 ARVKQEEQRYQALKVHAEEKLDRANEEIAQVRSK 317
Score = 25.8 bits (55), Expect(2) = e-119
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +1
Query: 1771 NKSQAESAALHAGL 1812
+K++AESAALHAGL
Sbjct: 316 SKAKAESAALHAGL 329
>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
musculus].
Length = 1146
Score = 208 bits (530), Expect = 1e-53
Identities = 103/160 (64%), Positives = 129/160 (80%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 997 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 1056
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 1057 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 1096
Score = 88.6 bits (218), Expect = 1e-17
Identities = 97/304 (31%), Positives = 135/304 (44%), Gaps = 34/304 (11%)
Frame = +3
Query: 333 LGSDPALEGTHLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER-PGVPSSDT--- 500
L D LE +P +C E AE+ SP G R+Q PP ++ P +S+
Sbjct: 376 LSDDTPLESPAVPTATCPLTL-ESAEDVSPLVSGGGRVQNSPPVGRKSVPLTTASEAVEV 434
Query: 501 --NDSGFEVLEEARGSPLRLQLDFAEDVEDAESR-ESLP--QKLGRKLGNRLTPEVRKDC 665
+DSG + A+G +RL+ D++ED ES+ E+ P +K+G+K ++ P R
Sbjct: 435 TLSDSGGQEDLPAKGLSVRLEFDYSEDKGSWESQQENAPPTKKIGKKPVAKM-PLRRPKM 493
Query: 666 SGEPVGAKDLELLPGLAA---EDAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPS 836
P + P + D P + + D W+ P PF S S +Q P L S
Sbjct: 494 KKTPEKLDNTPASPPRSPTEPSDTPIAKGTYTFDIDKWDDPNFNPFSSTSKMQESPKL-S 552
Query: 837 QGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI--------SEILESP-KKPKSRL 989
Q SY FD D +ESLDPFK + S SPA I + L P KK K+ L
Sbjct: 553 QQSYNFDPDACEESLDPFKASSKTPSSPSKSPASFEIPASTTEADGDGLNKPAKKKKTPL 612
Query: 990 ------ITSGC------KVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATDEEKL 1130
+ S C +VKK +S D SQD A + + HATDEEKL
Sbjct: 613 KTMVEDVMSVCSLFDTFRVKKSPKRSPLSDPPSQDPTPAATPEAPSAISTVVHATDEEKL 672
Query: 1131 ASTT 1142
A T+
Sbjct: 673 AVTS 676
>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
musculus].
Length = 1036
Score = 208 bits (530), Expect = 1e-53
Identities = 103/160 (64%), Positives = 129/160 (80%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 887 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 946
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 947 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 986
Score = 88.6 bits (218), Expect = 1e-17
Identities = 97/304 (31%), Positives = 135/304 (44%), Gaps = 34/304 (11%)
Frame = +3
Query: 333 LGSDPALEGTHLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER-PGVPSSDT--- 500
L D LE +P +C E AE+ SP G R+Q PP ++ P +S+
Sbjct: 266 LSDDTPLESPAVPTATCPLTL-ESAEDVSPLVSGGGRVQNSPPVGRKSVPLTTASEAVEV 324
Query: 501 --NDSGFEVLEEARGSPLRLQLDFAEDVEDAESR-ESLP--QKLGRKLGNRLTPEVRKDC 665
+DSG + A+G +RL+ D++ED ES+ E+ P +K+G+K ++ P R
Sbjct: 325 TLSDSGGQEDLPAKGLSVRLEFDYSEDKGSWESQQENAPPTKKIGKKPVAKM-PLRRPKM 383
Query: 666 SGEPVGAKDLELLPGLAA---EDAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPS 836
P + P + D P + + D W+ P PF S S +Q P L S
Sbjct: 384 KKTPEKLDNTPASPPRSPTEPSDTPIAKGTYTFDIDKWDDPNFNPFSSTSKMQESPKL-S 442
Query: 837 QGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI--------SEILESP-KKPKSRL 989
Q SY FD D +ESLDPFK + S SPA I + L P KK K+ L
Sbjct: 443 QQSYNFDPDACEESLDPFKASSKTPSSPSKSPASFEIPASTTEADGDGLNKPAKKKKTPL 502
Query: 990 ------ITSGC------KVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATDEEKL 1130
+ S C +VKK +S D SQD A + + HATDEEKL
Sbjct: 503 KTMVEDVMSVCSLFDTFRVKKSPKRSPLSDPPSQDPTPAATPEAPSAISTVVHATDEEKL 562
Query: 1131 ASTT 1142
A T+
Sbjct: 563 AVTS 566
>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
musculus].
Length = 2879
Score = 208 bits (530), Expect = 1e-53
Identities = 103/160 (64%), Positives = 129/160 (80%)
Frame = +3
Query: 1299 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1478
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729
Query: 1479 DEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKK 1658
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE +K VLEGF+KNEE LKK
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLKK 2789
Query: 1659 CAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRFEQK 1778
CAQ+YL+RVK+EEQRYQALK+HAEEKL++ ++ + K
Sbjct: 2790 CAQEYLSRVKKEEQRYQALKVHAEEKLDRANAEIAQVRGK 2829
Score = 88.6 bits (218), Expect = 1e-17
Identities = 97/304 (31%), Positives = 135/304 (44%), Gaps = 34/304 (11%)
Frame = +3
Query: 333 LGSDPALEGTHLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKER-PGVPSSDT--- 500
L D LE +P +C E AE+ SP G R+Q PP ++ P +S+
Sbjct: 2083 LSDDTPLESPAVPTATCPLTL-ESAEDVSPLVSGGGRVQNSPPVGRKSVPLTTASEAVEV 2141
Query: 501 --NDSGFEVLEEARGSPLRLQLDFAEDVEDAESR-ESLP--QKLGRKLGNRLTPEVRKDC 665
+DSG + A+G +RL+ D++ED ES+ E+ P +K+G+K ++ P R
Sbjct: 2142 TLSDSGGQEDLPAKGLSVRLEFDYSEDKGSWESQQENAPPTKKIGKKPVAKM-PLRRPKM 2200
Query: 666 SGEPVGAKDLELLPGLAA---EDAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPS 836
P + P + D P + + D W+ P PF S S +Q P L S
Sbjct: 2201 KKTPEKLDNTPASPPRSPTEPSDTPIAKGTYTFDIDKWDDPNFNPFSSTSKMQESPKL-S 2259
Query: 837 QGSYCFDQDDIDESLDPFKPTLTLTGSDFVSPAGNHI--------SEILESP-KKPKSRL 989
Q SY FD D +ESLDPFK + S SPA I + L P KK K+ L
Sbjct: 2260 QQSYNFDPDACEESLDPFKASSKTPSSPSKSPASFEIPASTTEADGDGLNKPAKKKKTPL 2319
Query: 990 ------ITSGC------KVKKYEAQSLALDGCSQD-EGAVISQISDISNRDGHATDEEKL 1130
+ S C +VKK +S D SQD A + + HATDEEKL
Sbjct: 2320 KTMVEDVMSVCSLFDTFRVKKSPKRSPLSDPPSQDPTPAATPEAPSAISTVVHATDEEKL 2379
Query: 1131 ASTT 1142
A T+
Sbjct: 2380 AVTS 2383
>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus musculus].
Length = 630
Score = 118 bits (296), Expect = 1e-26
Identities = 69/191 (36%), Positives = 113/191 (59%), Gaps = 8/191 (4%)
Frame = +3
Query: 1230 GTLEAPMEKAPVSVA-----CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKK 1394
G L+ P+ P+ V E +D + S+ D AV+ ++++E + E K
Sbjct: 397 GDLDVPVSAPPLCVLEPRGLLPAEPIVDVLKYSQKDLDAVVNVMQQENL-------ELKS 449
Query: 1395 KYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRA---SMTSQKSFQQLSMEKEQALADLNS 1565
KYE+ + LEM K V E+EK + +E+ ++ ++ Q++ E++Q ADLNS
Sbjct: 450 KYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQRELKEIAEDKIQKVLKERDQLNADLNS 509
Query: 1566 VERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNK 1745
+E+S SDLF+R+E K V+EG++KNEE+LKK + + ++++E QRYQALKIHAEEKL
Sbjct: 510 MEKSFSDLFKRFEKRKEVIEGYQKNEESLKKYVGECIVKIEKEGQRYQALKIHAEEKLRL 569
Query: 1746 PMKKLLRFEQK 1778
+++ + K
Sbjct: 570 ANEEIAQVHSK 580
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,694,243
Number of extensions: 1812508
Number of successful extensions: 8657
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8574
Number of HSP's successfully gapped: 11
Length of query: 604
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 497
Effective length of database: 12,403,707
Effective search space: 6164642379
Effective search space used: 6164642379
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001894
(1812 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-c... 667 0.0
Alignment gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c... 335 6e-93
Alignment gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c... 124 2e-28
>ref|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-containing protein 1 [Sus
scrofa].
Length = 521
Score = 667 bits (1720), Expect = 0.0
Identities = 332/351 (94%), Positives = 333/351 (94%)
Frame = +3
Query: 3 EEPEHDVSKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEAAAPRSVGGTQDEAM 182
EEPEHD SKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGE AAPRSVGGTQDEAM
Sbjct: 138 EEPEHDASKISIVRPFSIETKKPTDVLAALGTKAAHGSTPAVLGEVAAPRSVGGTQDEAM 197
Query: 183 TEDNVGVTLGASTEVDLKTGSTGPEPAVGXXXXXXXXXXXXXXXAIGSEFLGSDPALEGT 362
TEDNVGVTLGASTEVDLKTGSTGPEPAVG AIGSEFLGSD ALEGT
Sbjct: 198 TEDNVGVTLGASTEVDLKTGSTGPEPAVGRSRLRKPKPVPLRKKAIGSEFLGSDLALEGT 257
Query: 363 HLPRPSCRFGPDEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGS 542
HLPRPSCRFGPDEVAENSSPSRLGV+RIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGS
Sbjct: 258 HLPRPSCRFGPDEVAENSSPSRLGVARIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGS 317
Query: 543 PLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAE 722
PLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAE
Sbjct: 318 PLRLQLDFAEDVEDAESRESLPQKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAE 377
Query: 723 DAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTL 902
DAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTL
Sbjct: 378 DAPGLRDSPPLDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTL 437
Query: 903 TLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQ 1055
TLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQ
Sbjct: 438 TLTGSDFVSPAGNHISEILESPKKPKSRLITSGCKVKKYEAQSLALDGCSQ 488
>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein 1-like
[Sus scrofa].
Length = 254
Score = 335 bits (859), Expect(2) = 6e-93
Identities = 175/200 (87%), Positives = 185/200 (92%)
Frame = +3
Query: 1179 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 1358
++K M+ ++ D GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4 VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63
Query: 1359 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 1538
ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK
Sbjct: 64 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123
Query: 1539 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 1718
EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK
Sbjct: 124 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALK 183
Query: 1719 IHAEEKLNKPMKKLLRFEQK 1778
IHAEEKL+K +++ + K
Sbjct: 184 IHAEEKLDKANEEIAQVRTK 203
Score = 25.4 bits (54), Expect(2) = 6e-93
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 1774 KSQAESAALHAGL 1812
K++AESAALHAGL
Sbjct: 203 KAKAESAALHAGL 215
>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein 3-like
[Sus scrofa].
Length = 740
Score = 124 bits (311), Expect = 2e-28
Identities = 133/483 (27%), Positives = 210/483 (43%), Gaps = 22/483 (4%)
Frame = +3
Query: 396 DEVAENSSPSRLGVSRIQKHPPAVKERPGVPSSDTNDSGFEVLEEARGSPLRLQLDFAED 575
D+ E + S R P A P PS +++ + + RG P+RL+ DF++
Sbjct: 235 DQPGEAPAGSEDTAGREDAGPAAAGGAPS-PSPRKHEAAGQTADRPRGGPVRLEFDFSDS 293
Query: 576 VEDAESRESLP-QKLGRKLGNRLTPEVRKDCSGEPVGAKDLELLPGLAAEDAPGLRDSPP 752
A S+ P +K G+ G L P R+ + + G E GL G D
Sbjct: 294 ---ATSKRPPPLRKRGKTPG--LQPPSRRPKAKQ--GTVSGEAGEGLDGNPLGG--DGEA 344
Query: 753 LDPHPWESPGLGPFGSPSILQHCPPLPSQGSYCFDQDDIDESLDPFKPTLTLTGSDFVSP 932
P P S GP + PS+ DD+ L P T TG + +
Sbjct: 345 RTPEPCPSRPAGPAAAEDTS------PSRQVPSASVDDMP-GLQPMAGTPGATGEEGATD 397
Query: 933 A-GNHISEILESPKKPKSRLITSGCKVKKY-----------EAQSLALDGCSQDEGAVIS 1076
A G +P P S +++ E L G S + + +
Sbjct: 398 ASGTPAPTSSPTPPVPCSPGPAPDLSGEQFRDPADVLGTGAEVDYLEQFGASSFKDSALR 457
Query: 1077 QISDISNRDGHATDEEKLASTTCGQKPTGAEGKGMEKEMSLKMEKDGSTMPGTLEAP--- 1247
+ S D D + + T G KP+ A GM+ S + LEAP
Sbjct: 458 KQSLYLKFDPLLQDSPRRPAPT-GPKPSSA--CGMDAPSSGSAPEAALLDLDFLEAPALP 514
Query: 1248 -MEKAPVSVACGGE----SPL-DGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEET 1409
+ AP + GG P+ D + S+ D A + ++E E + + E
Sbjct: 515 ALGPAPSDLGPGGPLLPVGPIVDVLQYSQRDLDAAVEATQKENA-------ELRSRCTEL 567
Query: 1410 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEKEQALADLNSVERSLSDL 1589
+++VLEM KI+ +E+T+ Q +E+ Q+ ++ Q+ E+E DL SVE+S S+L
Sbjct: 568 QEKVLEMGKIMDRFEETVYQAMEEAQKQKELARVEVQKALQEQEHVSGDLRSVEKSFSEL 627
Query: 1590 FRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLNKPMKKLLRF 1769
FRR+E K V+EG++ NE +LKKC ++Y+ R+++E QRYQALK HAEEKL +++ +
Sbjct: 628 FRRFEKQKEVIEGYRTNEASLKKCVEEYMERLEKEGQRYQALKAHAEEKLQLASEEMAQV 687
Query: 1770 EQK 1778
+
Sbjct: 688 RSR 690
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,125,951
Number of extensions: 1414863
Number of successful extensions: 7272
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7216
Number of HSP's successfully gapped: 4
Length of query: 604
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 499
Effective length of database: 8,729,747
Effective search space: 4356143753
Effective search space used: 4356143753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001894
(1812 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1893 0.0
Sscrofa_Chr14 72 1e-09
>Sscrofa_Chr15
|| Length = 157681621
Score = 1893 bits (955), Expect = 0.0
Identities = 985/995 (98%)
Strand = Plus / Plus
Query: 1 gagaagaacctgaacacgatgttagcaaaatctcaatagtgaggccattttccatagaaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 55061202 gagaagaacctgaacacgatgctagcaaaatctcaatagtgaggccattttccatagaaa 55061261
Query: 61 ccaagaagcccacagatgtcctggcggcgcttggaacaaaagcagctcatggcagcaccc 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 55061262 ccaagaagcccacagatgtcctggcagcgcttggaacaaaagcagctcatggcagcaccc 55061321
Query: 121 ctgctgtcttaggcgaggcggcagccccccgatcagtgggtggcacccaggacgaggcga 180
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 55061322 ctgctgtcttaggcgaggtggcagccccccgctcagtgggtggcacccaggacgaggcga 55061381
Query: 181 tgacagaggacaatgtgggggtcacgctgggggcttccacggaggtcgacctgaagacag 240
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 55061382 tgacagaggacaatgtgggggtcacgctgggggcttccacagaggtcgacctgaagacgg 55061441
Query: 241 ggagcacaggcccggagcccgcagttggcagaagcaggctgaggaagcccaagcccatac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 55061442 ggagcacaggcccggagcccgcagttggcagaagcaggctgaggaagcccaagcccgtac 55061501
Query: 301 ccctgaggaagaaggcaattggcagcgagttcttgggttccgacccggctctggagggca 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 55061502 ccctgaggaagaaggcaattggcagcgagttcttgggttccgacctggctctggagggca 55061561
Query: 361 cgcacctccccaggccgtcctgccggttcggtcctgatgaggtggctgagaattccagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061562 cgcacctccccaggccgtcctgccggttcggtcctgatgaggtggctgagaattccagcc 55061621
Query: 421 cttcccgactaggagtttccaggatccagaaacatccccctgcagttaaggagaggccag 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061622 cttcccgactaggagttgccaggatccagaaacatccccctgcagttaaggagaggccag 55061681
Query: 481 gcgtccctagtagtgacaccaacgactcagggtttgaggtgcttgaggaggcaaggggct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061682 gcgtccctagtagtgacaccaacgactcagggtttgaggtgcttgaggaggcaaggggct 55061741
Query: 541 cacctctgaggctccagttggatttcgcagaagacgtggaagatgcagagtccagggaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061742 cacctctgaggctccagttggatttcgcagaagacgtggaagatgcagagtccagggaat 55061801
Query: 601 ccctcccgcaaaaactgggcaggaagctggggaacagactgacccccgaggtcaggaaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061802 ccctcccgcaaaaactgggcaggaagctggggaacagactgacccccgaggtcaggaaag 55061861
Query: 661 actgctctggggagccagtgggtgccaaagatttggagttgcttccaggcctggctgcag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061862 actgctctggggagccagtgggtgccaaagatttggagttgcttccaggcctggctgcag 55061921
Query: 721 aggatgctcccggcctccgagactctccgccgttggacccccatccctgggaaagccctg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061922 aggatgctcccggcctccgagactctccgccgttggacccccatccctgggaaagccctg 55061981
Query: 781 gccttggtccctttggaagcccctccatcctgcagcactgccccccgctcccctctcagg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55061982 gccttggtccctttggaagcccctccatcctgcagcactgccccccgctcccctctcagg 55062041
Query: 841 gctcctactgcttcgaccaggatgacattgacgaatccctggatccctttaaacccactc 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 55062042 gctcctactgcttcgaccaggacgacattgacgaatccctggatccctttaaacccactc 55062101
Query: 901 tgactttaacaggcagtgactttgtgtctcctgccggtaatcatatcagtgaaatcttag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55062102 tgactttaacaggcagtgactttgtgtctcctgccggtaatcatatcagtgaaatcttag 55062161
Query: 961 agtcacccaagaagccaaagtcacgtttaataacg 995
|||||||||||||||||||||||||||||||||||
Sbjct: 55062162 agtcacccaagaagccaaagtcacgtttaataacg 55062196
Score = 313 bits (158), Expect = 2e-82
Identities = 161/162 (99%)
Strand = Plus / Minus
Query: 1476 gaagacgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 1535
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624
Query: 1536 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564
Query: 1596 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 1637
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 54871522
Score = 248 bits (125), Expect = 9e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 1053 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362
Query: 1113 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422
Query: 1173 aaagg 1177
|||||
Sbjct: 55069423 aaagg 55069427
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1230 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055
Query: 1290 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 1346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112
Score = 208 bits (105), Expect = 8e-51
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 1636 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871012 agaatgaagaagccttgaaaaaatgtgctcaggattacttagccagagttaaacaagagg 54870953
Query: 1696 agcagcggtaccaggccctgaaaatccatgcggaagaaaaactaaacaa 1744
|||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54870952 agcagcggtaccaggccctgaaaatccatgcggaagaaaaactagacaa 54870904
Score = 159 bits (80), Expect = 7e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 1354 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298
Query: 1414 aagaagtcttggagatgagg 1433
||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278
Score = 115 bits (58), Expect = 9e-23
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 995 gagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttctca 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 55066576 gagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttcgca 55066635
Query: 1055 gg 1056
||
Sbjct: 55066636 gg 55066637
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 1175 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397
Score = 103 bits (52), Expect = 3e-19
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 1746 ccaatgaagaaattgctcaggttcgaacaaaagccaa-gctgaaagcgctgctctgcatg 1804
|||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 54866933 ccaatgaagagattgctcaggttcgaacaaaagccaaggctgagagcgctgctctgcatg 54866874
Query: 1805 cggggctc 1812
||||||||
Sbjct: 54866873 cggggctc 54866866
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 1431 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 1476
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186
>Sscrofa_Chr14
|| Length = 153851969
Score = 71.9 bits (36), Expect = 1e-09
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1431 aggaaaattgtggccgagtatgagaagaccattgcccaaatgat 1474
|||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565
Score = 63.9 bits (32), Expect = 3e-07
Identities = 92/112 (82%)
Strand = Plus / Plus
Query: 1516 tccagcagctgagcatggagaaggagcaggcgctggccgacctcaactccgtggagaggt 1575
||||||||||| | |||||||||| || || ||||||||||| ||||| ||||||| ||
Sbjct: 143126946 tccagcagctggtcctggagaaggaacaagccctggccgacctgaactcagtggagaagt 143127005
Query: 1576 ccctctccgacctcttcaggcgatatgagaacctgaaaggcgtcctggaggg 1627
| || |||| ||||||||| |||| ||||| |||| | |||||||||||
Sbjct: 143127006 ctctggccgatctcttcaggagatacgagaagatgaaggaggtcctggaggg 143127057
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,910,339
Number of extensions: 452
Number of successful extensions: 452
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 12
Length of query: 1812
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1790
Effective length of database: 2,808,408,574
Effective search space: 5027051347460
Effective search space used: 5027051347460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)