Animal-Genome cDNA 20110601C-001899


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001899
         (1290 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ...   436   e-122
Alignment   gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con...   436   e-122
Alignment   gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ...   154   1e-37
Alignment   gi|NP_001093775.1| transforming, acidic coiled-coil containing ...    70   4e-12

>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
            taurus].
          Length = 742

 Score =  436 bits (1120), Expect = e-122
 Identities = 223/257 (86%), Positives = 236/257 (91%)
 Frame = +2

Query: 518  ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
            + KS    SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+  Q
Sbjct: 394  KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 453

Query: 698  KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
            KPTGAEGKGEPE+DLEYF+CS+VPVSAINH FSSSEAG EK+   KMEKDGST+P  LE+
Sbjct: 454  KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 513

Query: 878  PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
            P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 514  PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 573

Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
            EMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 574  EMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 633

Query: 1238 NLESVLEGVQKNEKPLK 1288
            NL+ VLEG +KNE+ LK
Sbjct: 634  NLKGVLEGFKKNEEALK 650



 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 53/168 (31%), Positives = 68/168 (40%), Gaps = 36/168 (21%)
 Frame = +2

Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
           MAFSPWQILSPVQWA+WTWSAVR                     QAETKSLSF S  +  
Sbjct: 1   MAFSPWQILSPVQWARWTWSAVRGGGAGEDEAGGPEGYPEDEDSQAETKSLSFSSDSEGN 60

Query: 554 ----VKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLA------STTCGQKP 703
                 +   +S   + C    G      S    +D    +EE +A      S+    +P
Sbjct: 61  FETPETETPIRSPLKESCESHLGLA---GSGAKTQDSQEEEEELVAEVVGSCSSAAASRP 117

Query: 704 TGAEG-------------KGEPEED-----------LEYFDCSHVPVS 775
           +G E              + EPE D           +E  +C  VPV+
Sbjct: 118 SGQEAAPPAGGSRPVKDFREEPEHDASKISVVRPFSIESRNCGDVPVA 165


>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
            taurus].
          Length = 666

 Score =  436 bits (1120), Expect = e-122
 Identities = 223/257 (86%), Positives = 236/257 (91%)
 Frame = +2

Query: 518  ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
            + KS    SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+  Q
Sbjct: 318  KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 377

Query: 698  KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
            KPTGAEGKGEPE+DLEYF+CS+VPVSAINH FSSSEAG EK+   KMEKDGST+P  LE+
Sbjct: 378  KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 437

Query: 878  PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
            P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 438  PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 497

Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
            EMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 498  EMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 557

Query: 1238 NLESVLEGVQKNEKPLK 1288
            NL+ VLEG +KNE+ LK
Sbjct: 558  NLKGVLEGFKKNEEALK 574


>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
            taurus].
          Length = 2893

 Score =  154 bits (390), Expect = 1e-37
 Identities = 78/119 (65%), Positives = 95/119 (79%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2802


>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
          Length = 810

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 33/82 (40%), Positives = 56/82 (68%)
 Frame = +2

Query: 1043 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDL 1222
            ++ +LEM KI+  +E T+ Q++E+ Q+    ++   Q++  EK Q  ADL+S+E+S SDL
Sbjct: 638  QERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQKVLKEKAQLTADLHSMEKSFSDL 697

Query: 1223 FRRYENLESVLEGVQKNEKPLK 1288
            F+R+E  + V+EG + NE+ LK
Sbjct: 698  FKRFEKQKEVIEGYRTNEESLK 719


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,657,412
Number of extensions: 1086922
Number of successful extensions: 5469
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5461
Number of HSP's successfully gapped: 5
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001899
         (1290 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil...   494   e-140
Alignment   gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil...   434   e-122
Alignment   gi|XP_856593.1| PREDICTED: similar to transforming acidic coile...   426   e-119
Alignment   gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil...   366   e-101
Alignment   gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil...   154   1e-37
Alignment   gi|XP_536226.2| PREDICTED: similar to transforming acidic coile...    67   3e-11

>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 4 [Canis familiaris].
          Length = 395

 Score =  494 bits (1271), Expect = e-140
 Identities = 255/303 (84%), Positives = 263/303 (86%)
 Frame = +2

Query: 380  MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 559
            MAFSPWQILSPVQWAKWTWSAVR                     QAETKSLSFRSGCKVK
Sbjct: 1    MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60

Query: 560  KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGEPEED 739
            KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK  GAE KGEPEED
Sbjct: 61   KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEED 120

Query: 740  LEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 919
            LEYF+CS+VPVS INH FSSSEAG+EKEM  KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 121  LEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 180

Query: 920  SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 1099
            SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181  SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240

Query: 1100 QMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
            QMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+
Sbjct: 241  QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300

Query: 1280 PLK 1288
             LK
Sbjct: 301  ALK 303


>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 2 [Canis familiaris].
          Length = 800

 Score =  434 bits (1116), Expect = e-122
 Identities = 224/257 (87%), Positives = 233/257 (90%)
 Frame = +2

Query: 518  ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
            + KS    SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452  KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511

Query: 698  KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
            K  GAE KGEPEEDLEYF+CS+VPVS INH FSSSEAG+EKEM  KMEKDGS M G LE+
Sbjct: 512  KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLES 571

Query: 878  PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
             MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 572  SMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 631

Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
            EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 632  EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 691

Query: 1238 NLESVLEGVQKNEKPLK 1288
            NL+ VLEG +KNE+ LK
Sbjct: 692  NLKGVLEGFKKNEEALK 708



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 12/258 (4%)
 Frame = +2

Query: 380  MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
            MAFSPWQILSPVQWAKWTWSAVR                     QAETKSLSF S  +  
Sbjct: 1    MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSSDSEGN 60

Query: 554  VKKYEAQSLALDGCSQDEGAVISQIS-DISNRDGHATDE-------EKLASTTCGQKPTG 709
             +  EA++       +   + +     +   ++    DE       EK +S TC +    
Sbjct: 61   FETPEAETPIRSPLKESRDSSLGLAGPEAKTQESQEVDEQLVAEVVEKCSSETCSR---- 116

Query: 710  AEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEK 889
                 E E   +  D   V          SS   + +  S++  K+ + +P  L      
Sbjct: 117  ---TSENEVAQQAVDSYLVKDFKEEPEHDSSRISVVRPFSIE-AKNSTNIPAALGTRAAY 172

Query: 890  APVSVACGGESP--LDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEM 1063
              V+V  G  SP  +    L ++     + +  E     +++A     +   +R + L  
Sbjct: 173  GCVTVVSGEASPSSIPEAILDKAMTEGTMGVTLETSTESDLKAGSSSPEPVPSRSK-LRK 231

Query: 1064 RKIVAEYEKTIAQMIEDE 1117
             K V   +KTI + +E +
Sbjct: 232  PKPVPLRKKTIGEFLETD 249


>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
            protein 1 short isoform isoform 3 [Canis familiaris].
          Length = 366

 Score =  426 bits (1095), Expect = e-119
 Identities = 230/303 (75%), Positives = 236/303 (77%)
 Frame = +2

Query: 380  MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 559
            MAFSPWQILSPVQWAKWTWSAVR                     QAETKSLSFRSGCKVK
Sbjct: 1    MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60

Query: 560  KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGEPEED 739
            KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK  GAE KG     
Sbjct: 61   KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKG----- 115

Query: 740  LEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 919
                                    +EKEM  KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 116  ------------------------IEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 151

Query: 920  SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 1099
            SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 152  SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 211

Query: 1100 QMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
            QMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+
Sbjct: 212  QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 271

Query: 1280 PLK 1288
             LK
Sbjct: 272  ALK 274


>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 1 isoform 1 [Canis familiaris].
          Length = 771

 Score =  366 bits (940), Expect = e-101
 Identities = 199/257 (77%), Positives = 206/257 (80%)
 Frame = +2

Query: 518  ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
            + KS    SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452  KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511

Query: 698  KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
            K  GAE KG                             +EKEM  KMEKDGS M G LE+
Sbjct: 512  KSAGAEVKG-----------------------------IEKEMCQKMEKDGSAMTGLLES 542

Query: 878  PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
             MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 543  SMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 602

Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
            EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 603  EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 662

Query: 1238 NLESVLEGVQKNEKPLK 1288
            NL+ VLEG +KNE+ LK
Sbjct: 663  NLKGVLEGFKKNEEALK 679



 Score = 66.6 bits (161), Expect = 5e-11
 Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 12/258 (4%)
 Frame = +2

Query: 380  MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
            MAFSPWQILSPVQWAKWTWSAVR                     QAETKSLSF S  +  
Sbjct: 1    MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSSDSEGN 60

Query: 554  VKKYEAQSLALDGCSQDEGAVISQIS-DISNRDGHATDE-------EKLASTTCGQKPTG 709
             +  EA++       +   + +     +   ++    DE       EK +S TC +    
Sbjct: 61   FETPEAETPIRSPLKESRDSSLGLAGPEAKTQESQEVDEQLVAEVVEKCSSETCSR---- 116

Query: 710  AEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEK 889
                 E E   +  D   V          SS   + +  S++  K+ + +P  L      
Sbjct: 117  ---TSENEVAQQAVDSYLVKDFKEEPEHDSSRISVVRPFSIE-AKNSTNIPAALGTRAAY 172

Query: 890  APVSVACGGESP--LDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEM 1063
              V+V  G  SP  +    L ++     + +  E     +++A     +   +R + L  
Sbjct: 173  GCVTVVSGEASPSSIPEAILDKAMTEGTMGVTLETSTESDLKAGSSSPEPVPSRSK-LRK 231

Query: 1064 RKIVAEYEKTIAQMIEDE 1117
             K V   +KTI + +E +
Sbjct: 232  PKPVPLRKKTIGEFLETD 249


>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
            protein 2 isoform a [Canis familiaris].
          Length = 2885

 Score =  154 bits (390), Expect = 1e-37
 Identities = 78/119 (65%), Positives = 95/119 (79%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2794


>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
            familiaris].
          Length = 945

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
 Frame = +2

Query: 863  GTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK 1024
            G  +AP ++  P     GG      S +D +  ++ D  A +  +REE        +  +
Sbjct: 714  GAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE-------NSLLR 766

Query: 1025 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVE 1204
             + +    + LEM KI+  +E  + Q +E+ Q+    ++   Q++  EK+Q  ADL+S+E
Sbjct: 767  SRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAADLSSME 826

Query: 1205 RSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            +S SDLF+R+E  + V+EG   NE+ LK
Sbjct: 827  KSFSDLFKRFEKQKEVIEGYHTNEESLK 854


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,761,862
Number of extensions: 1119351
Number of successful extensions: 6100
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6048
Number of HSP's successfully gapped: 8
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001899
         (1290 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116296.1| transforming acidic coiled-coil-containing p...   487   e-138
Alignment   gi|NP_001139688.1| transforming acidic coiled-coil-containing p...   427   e-120
Alignment   gi|NP_006274.2| transforming acidic coiled-coil-containing prot...   427   e-120
Alignment   gi|NP_996744.2| transforming acidic coiled-coil-containing prot...   154   1e-37
Alignment   gi|NP_996743.1| transforming acidic coiled-coil-containing prot...   154   1e-37
Alignment   gi|NP_996742.1| transforming acidic coiled-coil-containing prot...   154   1e-37
Alignment   gi|NP_008928.1| transforming acidic coiled-coil-containing prot...   154   1e-37
Alignment   gi|NP_006333.1| transforming acidic coiled-coil-containing prot...    83   5e-16

>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2 [Homo
            sapiens].
          Length = 395

 Score =  487 bits (1254), Expect = e-138
 Identities = 250/303 (82%), Positives = 263/303 (86%)
 Frame = +2

Query: 380  MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 559
            MAFSPWQILSPVQWAKWTWSAVR                     QAETKSLSFRSGCKVK
Sbjct: 1    MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFRSGCKVK 60

Query: 560  KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGEPEED 739
            K+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK  GAE KGEPEED
Sbjct: 61   KHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEED 120

Query: 740  LEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 919
            LEYF+CS+VPVS INH FSSSEAG+EKE   KME+DGST+ G LE+  EKAPVSV+CGGE
Sbjct: 121  LEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGE 180

Query: 920  SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 1099
            SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181  SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240

Query: 1100 QMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
            QMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+
Sbjct: 241  QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300

Query: 1280 PLK 1288
             LK
Sbjct: 301  ALK 303


>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
            sapiens].
          Length = 610

 Score =  427 bits (1099), Expect = e-120
 Identities = 219/257 (85%), Positives = 233/257 (90%)
 Frame = +2

Query: 518  ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
            + KS    SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 262  KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 321

Query: 698  KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
            K  GAE KGEPEEDLEYF+CS+VPVS INH FSSSEAG+EKE   KME+DGST+ G LE+
Sbjct: 322  KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 381

Query: 878  PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
              EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 382  SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 441

Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
            EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 442  EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 501

Query: 1238 NLESVLEGVQKNEKPLK 1288
            NL+ VLEG +KNE+ LK
Sbjct: 502  NLKGVLEGFKKNEEALK 518


>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
            sapiens].
          Length = 805

 Score =  427 bits (1099), Expect = e-120
 Identities = 219/257 (85%), Positives = 233/257 (90%)
 Frame = +2

Query: 518  ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
            + KS    SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 457  KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 516

Query: 698  KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
            K  GAE KGEPEEDLEYF+CS+VPVS INH FSSSEAG+EKE   KME+DGST+ G LE+
Sbjct: 517  KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 576

Query: 878  PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
              EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 577  SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 636

Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
            EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 637  EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 696

Query: 1238 NLESVLEGVQKNEKPLK 1288
            NL+ VLEG +KNE+ LK
Sbjct: 697  NLKGVLEGFKKNEEALK 713



 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 76/259 (29%), Positives = 102/259 (39%), Gaps = 10/259 (3%)
 Frame = +2

Query: 380  MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
            MAFSPWQILSPVQWAKWTWSAVR                     QAETKSLSF S  +  
Sbjct: 1    MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFSSDSEGN 60

Query: 554  VKKYEAQ----SLALDGCSQDEG----AVISQISDISNRDGHATDEEKLASTTCGQKPTG 709
             +  EA+    S   + C    G       SQ S  ++    A   EK +S TC  KP+ 
Sbjct: 61   FETPEAETPIRSPFKESCDPSLGLAGPGAKSQESQEADEQLVAEVVEKCSSKTC-SKPSE 119

Query: 710  AEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEK 889
             E    P++ ++     +       H FS         +  K   D S + GT  A    
Sbjct: 120  NE---VPQQAIDSHSVKNFREEP-EHDFSKISIVRPFSIETKDSTDISAVLGTKAAHGCV 175

Query: 890  APVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRK 1069
              VS      SP D +   E+     + +  E     +++A     +   +R+  L   K
Sbjct: 176  TAVSGKALPSSPPDAL-QDEAMTEGSMGVTLEASAEADLKAGNSCPELVPSRRSKLRKPK 234

Query: 1070 IVAEYEKTIAQMIEDEQRA 1126
             V   +K I     D   A
Sbjct: 235  PVPLRKKAIGGEFSDTNAA 253


>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
            sapiens].
          Length = 2948

 Score =  154 bits (390), Expect = 1e-37
 Identities = 78/119 (65%), Positives = 95/119 (79%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2857


>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
            sapiens].
          Length = 1094

 Score =  154 bits (390), Expect = 1e-37
 Identities = 78/119 (65%), Positives = 95/119 (79%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 945  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 1003


>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
            sapiens].
          Length = 996

 Score =  154 bits (390), Expect = 1e-37
 Identities = 78/119 (65%), Positives = 95/119 (79%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 847  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 905


>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
            sapiens].
          Length = 1026

 Score =  154 bits (390), Expect = 1e-37
 Identities = 78/119 (65%), Positives = 95/119 (79%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817  GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 877  DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 935


>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
          Length = 838

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
 Frame = +2

Query: 863  GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 1024
            G L+ P+   P  V   G  PL      D +  S+ D  AV+   +EE         E +
Sbjct: 607  GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659

Query: 1025 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVE 1204
             + EE   + LE+ KI+  +E+ + Q +E+ Q+    S+   Q++  EK+Q   DLNS+E
Sbjct: 660  SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719

Query: 1205 RSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            +S SDLF+R+E  + V+EG +KNE+ LK
Sbjct: 720  KSFSDLFKRFEKQKEVIEGYRKNEESLK 747


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,555,701
Number of extensions: 1077025
Number of successful extensions: 5409
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5388
Number of HSP's successfully gapped: 9
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001899
         (1290 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_955355.1| transforming acidic coiled-coil-containing prot...   391   e-109
Alignment   gi|NP_796063.3| transforming acidic coiled-coil-containing prot...   336   2e-92
Alignment   gi|NP_996738.2| transforming acidic coiled-coil-containing prot...   150   3e-36
Alignment   gi|NP_067289.2| transforming acidic coiled-coil-containing prot...   150   3e-36
Alignment   gi|NP_001004468.1| transforming acidic coiled-coil-containing p...   150   3e-36
Alignment   gi|NP_001035525.1| transforming acidic coiled-coil-containing p...    84   2e-16

>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
            [Mus musculus].
          Length = 368

 Score =  391 bits (1005), Expect = e-109
 Identities = 216/305 (70%), Positives = 229/305 (75%), Gaps = 2/305 (0%)
 Frame = +2

Query: 380  MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXX-QAETKSLSFRSGCKV 556
            MAFSPWQILSPVQWAKWTWSAVR                      QAETKSLSFRSGCKV
Sbjct: 1    MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFRSGCKV 60

Query: 557  KKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGEPE 733
            KKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK  GA  KG   
Sbjct: 61   KKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKG--- 117

Query: 734  EDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACG 913
                                      +EKE   KMEK+   + G LE+  EKAPVSVACG
Sbjct: 118  --------------------------IEKETCQKMEKEELAVHGLLESSSEKAPVSVACG 151

Query: 914  GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKT 1093
            GESPLDGICLSE+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EVLEMRKIVAEYEKT
Sbjct: 152  GESPLDGICLSEADKTAVLTLIREEIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKT 211

Query: 1094 IAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKN 1273
            IAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KN
Sbjct: 212  IAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKN 271

Query: 1274 EKPLK 1288
            E+ LK
Sbjct: 272  EEALK 276


>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
            [Mus musculus].
          Length = 776

 Score =  336 bits (862), Expect = 2e-92
 Identities = 185/258 (71%), Positives = 199/258 (77%), Gaps = 1/258 (0%)
 Frame = +2

Query: 518  ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CG 694
            + KS    SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C 
Sbjct: 456  KAKSRLITSGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCA 515

Query: 695  QKPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLE 874
            QK  GA  KG                             +EKE   KMEK+   + G LE
Sbjct: 516  QKSAGAGVKG-----------------------------IEKETCQKMEKEELAVHGLLE 546

Query: 875  APMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEV 1054
            +  EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EV
Sbjct: 547  SSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIITKEIEANEWKKKYEETREEV 606

Query: 1055 LEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRY 1234
            LEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRY
Sbjct: 607  LEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRY 666

Query: 1235 ENLESVLEGVQKNEKPLK 1288
            ENL+ VLEG +KNE+ LK
Sbjct: 667  ENLKGVLEGFKKNEEALK 684



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 33/56 (58%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 380 MAFSPWQILSPVQWAKWTWSAVR-XXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 544
           MAFSPWQILSPVQWAKWTWSAVR                      QAETKSLSF S
Sbjct: 1   MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFSS 56


>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
            musculus].
          Length = 1146

 Score =  150 bits (378), Expect = 3e-36
 Identities = 75/119 (63%), Positives = 94/119 (78%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937  GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 997  DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 1055


>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
            musculus].
          Length = 1036

 Score =  150 bits (378), Expect = 3e-36
 Identities = 75/119 (63%), Positives = 94/119 (78%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827  GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 887  DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 945


>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
            musculus].
          Length = 2879

 Score =  150 bits (378), Expect = 3e-36
 Identities = 75/119 (63%), Positives = 94/119 (78%)
 Frame = +2

Query: 932  GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
            G+   + D  + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729

Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            DEQR    S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2788


>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus musculus].
          Length = 630

 Score = 84.0 bits (206), Expect = 2e-16
 Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
 Frame = +2

Query: 764  VPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVA-----CGGESPL 928
            +PV+ I ++   +E         + E       G L+ P+   P+ V         E  +
Sbjct: 364  MPVAPITNSTQDTEEESGSGKPTEAELVNLDFLGDLDVPVSAPPLCVLEPRGLLPAEPIV 423

Query: 929  DGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMI 1108
            D +  S+ D  AV+ ++++E +       E K KYE+   + LEM K V E+EK   + +
Sbjct: 424  DVLKYSQKDLDAVVNVMQQENL-------ELKSKYEDLNTKYLEMGKSVDEFEKIAYKSL 476

Query: 1109 EDEQRA---SMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
            E+ ++       ++   Q++  E++Q  ADLNS+E+S SDLF+R+E  + V+EG QKNE+
Sbjct: 477  EEAEKQRELKEIAEDKIQKVLKERDQLNADLNSMEKSFSDLFKRFEKRKEVIEGYQKNEE 536

Query: 1280 PLK 1288
             LK
Sbjct: 537  SLK 539


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,459,739
Number of extensions: 883257
Number of successful extensions: 4142
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4128
Number of HSP's successfully gapped: 7
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001899
         (1290 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c...   263   1e-70
Alignment   gi|XP_003133400.2| PREDICTED: hypothetical protein LOC100520518...   111   1e-24
Alignment   gi|XP_003133410.1| PREDICTED: hypothetical protein LOC100523028...   110   1e-24
Alignment   gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c...    71   1e-12
Alignment   gi|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-c...    65   6e-11

>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein 1-like
            [Sus scrofa].
          Length = 254

 Score =  263 bits (673), Expect = 1e-70
 Identities = 138/159 (86%), Positives = 147/159 (92%)
 Frame = +2

Query: 812  MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 991
            ++K M+ ++  D     GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4    VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63

Query: 992  ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEK 1171
            ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQL+MEK
Sbjct: 64   ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123

Query: 1172 EQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
            EQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+ LK
Sbjct: 124  EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALK 162


>ref|XP_003133400.2| PREDICTED: hypothetical protein LOC100520518 [Sus scrofa].
          Length = 214

 Score =  111 bits (277), Expect = 1e-24
 Identities = 61/96 (63%), Positives = 61/96 (63%)
 Frame = -3

Query: 289 AGRASSGGADVVKXXXXXXXXXXXXXXXXXXXXXXXXXXRTCGSGASAPGDSRWKDTSPG 110
           AGRASSGGADVVK                          RTCGSGASAPGDSRWKDTSPG
Sbjct: 3   AGRASSGGADVVKRAPSGGPGGALPLRRQAAPRSPRPPSRTCGSGASAPGDSRWKDTSPG 62

Query: 109 ASXXXXXXXXXSGSAGQRLRVRASRLPPPGRRGAHQ 2
           AS         SGSAGQRLRVRASRLPPPGRRGAHQ
Sbjct: 63  ASSGPGPAGRLSGSAGQRLRVRASRLPPPGRRGAHQ 98


>ref|XP_003133410.1| PREDICTED: hypothetical protein LOC100523028 [Sus scrofa].
          Length = 103

 Score =  110 bits (276), Expect = 1e-24
 Identities = 59/103 (57%), Positives = 59/103 (57%)
 Frame = +2

Query: 5   MRASPARRREPGRSDPESLTRRAAXXXXXXXXXGGPWRGVFPXXXXXXXXXXXXXXXXXX 184
           MRASPARRREPGRSDPESLTRRAA         GGPWRGVFP                  
Sbjct: 1   MRASPARRREPGRSDPESLTRRAAEPPRGPGPRGGPWRGVFPARVAGCGGAAAARSGRRT 60

Query: 185 XXXXXXLPAEXXXXXXXXXXXSFNHIRASTGSASGACHRFPPF 313
                 LPAE           SFNHIRASTGSASGACHRFPPF
Sbjct: 61  RRTGRCLPAERKRSTRAPRRRSFNHIRASTGSASGACHRFPPF 103


>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein 3-like
            [Sus scrofa].
          Length = 740

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
 Frame = +2

Query: 797  SSEAGMEKEMSLKMEKDGSTMPGTLEAP----MEKAPVSVACGGE----SPL-DGICLSE 949
            SS  GM+   S    +        LEAP    +  AP  +  GG      P+ D +  S+
Sbjct: 484  SSACGMDAPSSGSAPEAALLDLDFLEAPALPALGPAPSDLGPGGPLLPVGPIVDVLQYSQ 543

Query: 950  SDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRAS 1129
             D  A +   ++E         E + +  E +++VLEM KI+  +E+T+ Q +E+ Q+  
Sbjct: 544  RDLDAAVEATQKENA-------ELRSRCTELQEKVLEMGKIMDRFEETVYQAMEEAQKQK 596

Query: 1130 MTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
              ++   Q+   E+E    DL SVE+S S+LFRR+E  + V+EG + NE  LK
Sbjct: 597  ELARVEVQKALQEQEHVSGDLRSVEKSFSELFRRFEKQKEVIEGYRTNEASLK 649


>ref|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-containing protein 1
           [Sus scrofa].
          Length = 521

 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 33/55 (60%), Positives = 33/55 (60%)
 Frame = +2

Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 544
           MAFSPWQILSPVQWAKWTWSAVR                     QAETKSLSF S
Sbjct: 1   MAFSPWQILSPVQWAKWTWSAVRGGGAGGDEAGGSEGDPEEEDSQAETKSLSFSS 55


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,765,492
Number of extensions: 729912
Number of successful extensions: 3465
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3451
Number of HSP's successfully gapped: 5
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001899
         (1290 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         914   0.0  
Sscrofa_Chr14                                                          72   8e-10

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  914 bits (461), Expect = 0.0
 Identities = 516/541 (95%), Gaps = 1/541 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        gctgatgcgcgcctcgccggcccggaggcgggagccgggacgctcggacccggagtcgct 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038466 gctgatgcgcgcctcgccggcccggaggcgggagccgggacgctcggacccggagtcgct 55038525

                                                                            
Query: 61       gacccgccgagccgctgannnnnnnnnnnnnnnnnnnnnnnnaggaggcccctggagagg 120
                ||||||||||||||||||                        ||||||||||||||||||
Sbjct: 55038526 gacccgccgagccgctgagccgccccgcgggcccgggccccgaggaggcccctggagagg 55038585

                                                                            
Query: 121      tgtctttccagcgagagtcgccgggtgcggaggcgccgctgccgcacgttcgggaaggag 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038586 tgtctttccagcgagagtcgccgggtgcggaggcgccgctgccgcacgttcgggaaggag 55038645

                                                                            
Query: 181      gacgaggagaacggggcgctgcctgccggcggagaggaagcgctccacccgggccccccg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038646 gacgaggagaacggggcgctgcctgccggcggagaggaagcgctccacccgggccccccg 55038705

                                                                            
Query: 241      acggcgctcgtttaaccacatccgcgcctccactggaagcgcgtccggcgcctgtcaccg 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038706 acggcgctcgtttaaccacatccgcgcctccactggaagcgcgtccggcgcctgtcaccg 55038765

                                                                            
Query: 301      gttccctccattttgaaagggaaaaaaggctctcccccttcccctcctcctaggagccgg 360
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038766 gttccctccattt-gaaagggaaaaaaggctctcccccttcccctcctcctaggagccgg 55038824

                                                                            
Query: 361      agctggaggagccgcgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtg 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038825 agctggaggagccgcgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtg 55038884

                                                                            
Query: 421      ggcgaaatggacatggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagg 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038885 ggcgaaatggacatggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagg 55038944

                                                                            
Query: 481      gtcggagggcgaccccgaggaggaggactcgcaagccgagaccaaatccttgagtttcag 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038945 gtcggagggcgaccccgaggaggaggactcgcaagccgagaccaaatccttgagtttcag 55039004

                 
Query: 541      g 541
                |
Sbjct: 55039005 g 55039005



 Score =  420 bits (212), Expect = e-115
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                            
Query: 599      caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 658
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362

                                                                            
Query: 659      acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 718
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422

                                                                            
Query: 719      aaaggtgagccagaggaagacctggagtactttgactgttcccatgttcccgtgtctgcc 778
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069423 aaaggtgagccagaggaagacctggagtactttgactgttcccatgttcccgtgtctgcc 55069482

                                                
Query: 779      ataaatcatacgttttcatcctcagaagcagg 810
                ||||||||||||||||||||||||||||||||
Sbjct: 55069483 ataaatcatacgttttcatcctcagaagcagg 55069514



 Score =  266 bits (134), Expect = 3e-68
 Identities = 155/162 (95%)
 Strand = Plus / Minus

                                                                            
Query: 1109     gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgaacatggag 1168
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624

                                                                            
Query: 1169     aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 1228
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564

                                                          
Query: 1229     cgatatgaaaacctggaaagcgtcctggaaggggtccagaag 1270
                |||||||| |||||| || |||||||||| ||| || |||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 54871522



 Score =  232 bits (117), Expect = 4e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 863      ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 922
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055

                                                                         
Query: 923      cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 979
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112



 Score =  159 bits (80), Expect = 5e-36
 Identities = 80/80 (100%)
 Strand = Plus / Minus

                                                                            
Query: 987      agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 1046
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298

                                    
Query: 1047     aagaagtcttggagatgagg 1066
                ||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278



 Score =  121 bits (61), Expect = 1e-24
 Identities = 64/65 (98%)
 Strand = Plus / Plus

                                                                            
Query: 538      caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 597
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55066573 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 55066632

                     
Query: 598      tcagg 602
                 ||||
Sbjct: 55066633 gcagg 55066637



 Score =  111 bits (56), Expect = 1e-21
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                        
Query: 808      aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 863
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397



 Score = 91.7 bits (46), Expect = 9e-16
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                              
Query: 1064     aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 1109
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                             
Query: 1064      aggaaaattgtggccgagtatgagaagaccattgcccaaatgat 1107
                 |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,257,977
Number of extensions: 319
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 10
Length of query: 1290
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1269
Effective length of database: 2,808,413,156
Effective search space: 3563876294964
Effective search space used: 3563876294964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)