Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001899
(1290 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil ... 436 e-122
Alignment gi|XP_583551.3| PREDICTED: transforming, acidic coiled-coil con... 436 e-122
Alignment gi|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil ... 154 1e-37
Alignment gi|NP_001093775.1| transforming, acidic coiled-coil containing ... 70 4e-12
>ref|XP_002698763.1| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 742
Score = 436 bits (1120), Expect = e-122
Identities = 223/257 (86%), Positives = 236/257 (91%)
Frame = +2
Query: 518 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
+ KS SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ Q
Sbjct: 394 KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 453
Query: 698 KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
KPTGAEGKGEPE+DLEYF+CS+VPVSAINH FSSSEAG EK+ KMEKDGST+P LE+
Sbjct: 454 KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 513
Query: 878 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 514 PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 573
Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
EMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 574 EMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 633
Query: 1238 NLESVLEGVQKNEKPLK 1288
NL+ VLEG +KNE+ LK
Sbjct: 634 NLKGVLEGFKKNEEALK 650
Score = 65.5 bits (158), Expect = 1e-10
Identities = 53/168 (31%), Positives = 68/168 (40%), Gaps = 36/168 (21%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
MAFSPWQILSPVQWA+WTWSAVR QAETKSLSF S +
Sbjct: 1 MAFSPWQILSPVQWARWTWSAVRGGGAGEDEAGGPEGYPEDEDSQAETKSLSFSSDSEGN 60
Query: 554 ----VKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLA------STTCGQKP 703
+ +S + C G S +D +EE +A S+ +P
Sbjct: 61 FETPETETPIRSPLKESCESHLGLA---GSGAKTQDSQEEEEELVAEVVGSCSSAAASRP 117
Query: 704 TGAEG-------------KGEPEED-----------LEYFDCSHVPVS 775
+G E + EPE D +E +C VPV+
Sbjct: 118 SGQEAAPPAGGSRPVKDFREEPEHDASKISVVRPFSIESRNCGDVPVA 165
>ref|XP_583551.3| PREDICTED: transforming, acidic coiled-coil containing protein 1 [Bos
taurus].
Length = 666
Score = 436 bits (1120), Expect = e-122
Identities = 223/257 (86%), Positives = 236/257 (91%)
Frame = +2
Query: 518 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
+ KS SGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ Q
Sbjct: 318 KAKSRLITSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSVQ 377
Query: 698 KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
KPTGAEGKGEPE+DLEYF+CS+VPVSAINH FSSSEAG EK+ KMEKDGST+P LE+
Sbjct: 378 KPTGAEGKGEPEDDLEYFECSNVPVSAINHAFSSSEAGSEKDPCQKMEKDGSTVPALLES 437
Query: 878 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
P+EK PVSVACG ESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 438 PVEKTPVSVACGVESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 497
Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
EMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 498 EMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 557
Query: 1238 NLESVLEGVQKNEKPLK 1288
NL+ VLEG +KNE+ LK
Sbjct: 558 NLKGVLEGFKKNEEALK 574
>ref|XP_002703282.1| PREDICTED: transforming, acidic coiled-coil containing protein 2 [Bos
taurus].
Length = 2893
Score = 154 bits (390), Expect = 1e-37
Identities = 78/119 (65%), Positives = 95/119 (79%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2684 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2743
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2744 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2802
>ref|NP_001093775.1| transforming, acidic coiled-coil containing protein 3 [Bos taurus].
Length = 810
Score = 70.1 bits (170), Expect = 4e-12
Identities = 33/82 (40%), Positives = 56/82 (68%)
Frame = +2
Query: 1043 RQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDL 1222
++ +LEM KI+ +E T+ Q++E+ Q+ ++ Q++ EK Q ADL+S+E+S SDL
Sbjct: 638 QERLLEMGKIMDSFEGTVYQVMEESQKQKELTKAEMQKVLKEKAQLTADLHSMEKSFSDL 697
Query: 1223 FRRYENLESVLEGVQKNEKPLK 1288
F+R+E + V+EG + NE+ LK
Sbjct: 698 FKRFEKQKEVIEGYRTNEESLK 719
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,657,412
Number of extensions: 1086922
Number of successful extensions: 5469
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5461
Number of HSP's successfully gapped: 5
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001899
(1290 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856634.1| PREDICTED: similar to transforming, acidic coil... 494 e-140
Alignment gi|XP_848665.1| PREDICTED: similar to transforming, acidic coil... 434 e-122
Alignment gi|XP_856593.1| PREDICTED: similar to transforming acidic coile... 426 e-119
Alignment gi|XP_532800.2| PREDICTED: similar to transforming, acidic coil... 366 e-101
Alignment gi|XP_535042.2| PREDICTED: similar to transforming, acidic coil... 154 1e-37
Alignment gi|XP_536226.2| PREDICTED: similar to transforming acidic coile... 67 3e-11
>ref|XP_856634.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 4 [Canis familiaris].
Length = 395
Score = 494 bits (1271), Expect = e-140
Identities = 255/303 (84%), Positives = 263/303 (86%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 559
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60
Query: 560 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGEPEED 739
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KGEPEED
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKGEPEED 120
Query: 740 LEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 919
LEYF+CS+VPVS INH FSSSEAG+EKEM KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 180
Query: 920 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 1099
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240
Query: 1100 QMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
QMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300
Query: 1280 PLK 1288
LK
Sbjct: 301 ALK 303
>ref|XP_848665.1| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 2 [Canis familiaris].
Length = 800
Score = 434 bits (1116), Expect = e-122
Identities = 224/257 (87%), Positives = 233/257 (90%)
Frame = +2
Query: 518 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
+ KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452 KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511
Query: 698 KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
K GAE KGEPEEDLEYF+CS+VPVS INH FSSSEAG+EKEM KMEKDGS M G LE+
Sbjct: 512 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKEMCQKMEKDGSAMTGLLES 571
Query: 878 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 572 SMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 631
Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 632 EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 691
Query: 1238 NLESVLEGVQKNEKPLK 1288
NL+ VLEG +KNE+ LK
Sbjct: 692 NLKGVLEGFKKNEEALK 708
Score = 66.6 bits (161), Expect = 5e-11
Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 12/258 (4%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S +
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSSDSEGN 60
Query: 554 VKKYEAQSLALDGCSQDEGAVISQIS-DISNRDGHATDE-------EKLASTTCGQKPTG 709
+ EA++ + + + + ++ DE EK +S TC +
Sbjct: 61 FETPEAETPIRSPLKESRDSSLGLAGPEAKTQESQEVDEQLVAEVVEKCSSETCSR---- 116
Query: 710 AEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEK 889
E E + D V SS + + S++ K+ + +P L
Sbjct: 117 ---TSENEVAQQAVDSYLVKDFKEEPEHDSSRISVVRPFSIE-AKNSTNIPAALGTRAAY 172
Query: 890 APVSVACGGESP--LDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEM 1063
V+V G SP + L ++ + + E +++A + +R + L
Sbjct: 173 GCVTVVSGEASPSSIPEAILDKAMTEGTMGVTLETSTESDLKAGSSSPEPVPSRSK-LRK 231
Query: 1064 RKIVAEYEKTIAQMIEDE 1117
K V +KTI + +E +
Sbjct: 232 PKPVPLRKKTIGEFLETD 249
>ref|XP_856593.1| PREDICTED: similar to transforming acidic coiled-coil containing
protein 1 short isoform isoform 3 [Canis familiaris].
Length = 366
Score = 426 bits (1095), Expect = e-119
Identities = 230/303 (75%), Positives = 236/303 (77%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 559
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFRSGCKVK 60
Query: 560 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGEPEED 739
KYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQK GAE KG
Sbjct: 61 KYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQKSAGAEVKG----- 115
Query: 740 LEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 919
+EKEM KMEKDGS M G LE+ MEKAPVSVAC GE
Sbjct: 116 ------------------------IEKEMCQKMEKDGSAMTGLLESSMEKAPVSVACEGE 151
Query: 920 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 1099
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 152 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 211
Query: 1100 QMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
QMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+
Sbjct: 212 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 271
Query: 1280 PLK 1288
LK
Sbjct: 272 ALK 274
>ref|XP_532800.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 1 isoform 1 [Canis familiaris].
Length = 771
Score = 366 bits (940), Expect = e-101
Identities = 199/257 (77%), Positives = 206/257 (80%)
Frame = +2
Query: 518 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
+ KS SGCKVKKYE QSLALDGCSQDEGAVISQISDISNRDGHATDEEKLAST+ GQ
Sbjct: 452 KAKSRLITSGCKVKKYETQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTSSGQ 511
Query: 698 KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
K GAE KG +EKEM KMEKDGS M G LE+
Sbjct: 512 KSAGAEVKG-----------------------------IEKEMCQKMEKDGSAMTGLLES 542
Query: 878 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
MEKAPVSVAC GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 543 SMEKAPVSVACEGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 602
Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 603 EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 662
Query: 1238 NLESVLEGVQKNEKPLK 1288
NL+ VLEG +KNE+ LK
Sbjct: 663 NLKGVLEGFKKNEEALK 679
Score = 66.6 bits (161), Expect = 5e-11
Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 12/258 (4%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S +
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGEEEAGGPEGDPEDEDSQAETKSLSFSSDSEGN 60
Query: 554 VKKYEAQSLALDGCSQDEGAVISQIS-DISNRDGHATDE-------EKLASTTCGQKPTG 709
+ EA++ + + + + ++ DE EK +S TC +
Sbjct: 61 FETPEAETPIRSPLKESRDSSLGLAGPEAKTQESQEVDEQLVAEVVEKCSSETCSR---- 116
Query: 710 AEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEK 889
E E + D V SS + + S++ K+ + +P L
Sbjct: 117 ---TSENEVAQQAVDSYLVKDFKEEPEHDSSRISVVRPFSIE-AKNSTNIPAALGTRAAY 172
Query: 890 APVSVACGGESP--LDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEM 1063
V+V G SP + L ++ + + E +++A + +R + L
Sbjct: 173 GCVTVVSGEASPSSIPEAILDKAMTEGTMGVTLETSTESDLKAGSSSPEPVPSRSK-LRK 231
Query: 1064 RKIVAEYEKTIAQMIEDE 1117
K V +KTI + +E +
Sbjct: 232 PKPVPLRKKTIGEFLETD 249
>ref|XP_535042.2| PREDICTED: similar to transforming, acidic coiled-coil containing
protein 2 isoform a [Canis familiaris].
Length = 2885
Score = 154 bits (390), Expect = 1e-37
Identities = 78/119 (65%), Positives = 95/119 (79%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2676 GLLFQQPDLDSALRIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2735
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2736 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2794
>ref|XP_536226.2| PREDICTED: similar to transforming acidic coiled coil 3 [Canis
familiaris].
Length = 945
Score = 67.4 bits (163), Expect = 3e-11
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Frame = +2
Query: 863 GTLEAP-MEKAPVSVACGGE-----SPLDGICLSESDKTAVLTLIREEIITKEIEANEWK 1024
G +AP ++ P GG S +D + ++ D A + +REE + +
Sbjct: 714 GAPDAPVLDPPPCVFGPGGPLLPLGSIVDVLQYTQKDMDAAVEAMREE-------NSLLR 766
Query: 1025 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVE 1204
+ + + LEM KI+ +E + Q +E+ Q+ ++ Q++ EK+Q ADL+S+E
Sbjct: 767 SRCDTLHAKNLEMGKIMDGFEGIVYQAMEEAQKQKELAKAEIQKILKEKDQLAADLSSME 826
Query: 1205 RSLSDLFRRYENLESVLEGVQKNEKPLK 1288
+S SDLF+R+E + V+EG NE+ LK
Sbjct: 827 KSFSDLFKRFEKQKEVIEGYHTNEESLK 854
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,761,862
Number of extensions: 1119351
Number of successful extensions: 6100
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6048
Number of HSP's successfully gapped: 8
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001899
(1290 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116296.1| transforming acidic coiled-coil-containing p... 487 e-138
Alignment gi|NP_001139688.1| transforming acidic coiled-coil-containing p... 427 e-120
Alignment gi|NP_006274.2| transforming acidic coiled-coil-containing prot... 427 e-120
Alignment gi|NP_996744.2| transforming acidic coiled-coil-containing prot... 154 1e-37
Alignment gi|NP_996743.1| transforming acidic coiled-coil-containing prot... 154 1e-37
Alignment gi|NP_996742.1| transforming acidic coiled-coil-containing prot... 154 1e-37
Alignment gi|NP_008928.1| transforming acidic coiled-coil-containing prot... 154 1e-37
Alignment gi|NP_006333.1| transforming acidic coiled-coil-containing prot... 83 5e-16
>ref|NP_001116296.1| transforming acidic coiled-coil-containing protein 1 isoform 2 [Homo
sapiens].
Length = 395
Score = 487 bits (1254), Expect = e-138
Identities = 250/303 (82%), Positives = 263/303 (86%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCKVK 559
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKVK
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFRSGCKVK 60
Query: 560 KYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQKPTGAEGKGEPEED 739
K+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQK GAE KGEPEED
Sbjct: 61 KHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEED 120
Query: 740 LEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGE 919
LEYF+CS+VPVS INH FSSSEAG+EKE KME+DGST+ G LE+ EKAPVSV+CGGE
Sbjct: 121 LEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGE 180
Query: 920 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 1099
SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA
Sbjct: 181 SPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIA 240
Query: 1100 QMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
QMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+
Sbjct: 241 QMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEE 300
Query: 1280 PLK 1288
LK
Sbjct: 301 ALK 303
>ref|NP_001139688.1| transforming acidic coiled-coil-containing protein 1 isoform 3 [Homo
sapiens].
Length = 610
Score = 427 bits (1099), Expect = e-120
Identities = 219/257 (85%), Positives = 233/257 (90%)
Frame = +2
Query: 518 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
+ KS SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 262 KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 321
Query: 698 KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
K GAE KGEPEEDLEYF+CS+VPVS INH FSSSEAG+EKE KME+DGST+ G LE+
Sbjct: 322 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 381
Query: 878 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 382 SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 441
Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 442 EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 501
Query: 1238 NLESVLEGVQKNEKPLK 1288
NL+ VLEG +KNE+ LK
Sbjct: 502 NLKGVLEGFKKNEEALK 518
>ref|NP_006274.2| transforming acidic coiled-coil-containing protein 1 isoform 1 [Homo
sapiens].
Length = 805
Score = 427 bits (1099), Expect = e-120
Identities = 219/257 (85%), Positives = 233/257 (90%)
Frame = +2
Query: 518 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTTCGQ 697
+ KS SGCKVKK+E QSLALD CS+DEGAVISQISDISNRDGHATDEEKLAST+CGQ
Sbjct: 457 KAKSRLITSGCKVKKHETQSLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQ 516
Query: 698 KPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEA 877
K GAE KGEPEEDLEYF+CS+VPVS INH FSSSEAG+EKE KME+DGST+ G LE+
Sbjct: 517 KSAGAEVKGEPEEDLEYFECSNVPVSTINHAFSSSEAGIEKETCQKMEEDGSTVLGLLES 576
Query: 878 PMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 1057
EKAPVSV+CGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL
Sbjct: 577 SAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVL 636
Query: 1058 EMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYE 1237
EMRKIVAEYEKTIAQMIEDEQR SMTSQKSFQQL MEKEQALADLNSVERSLSDLFRRYE
Sbjct: 637 EMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYE 696
Query: 1238 NLESVLEGVQKNEKPLK 1288
NL+ VLEG +KNE+ LK
Sbjct: 697 NLKGVLEGFKKNEEALK 713
Score = 65.9 bits (159), Expect = 8e-11
Identities = 76/259 (29%), Positives = 102/259 (39%), Gaps = 10/259 (3%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRSGCK-- 553
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S +
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGAAGEDEAGGPEGDPEEEDSQAETKSLSFSSDSEGN 60
Query: 554 VKKYEAQ----SLALDGCSQDEG----AVISQISDISNRDGHATDEEKLASTTCGQKPTG 709
+ EA+ S + C G SQ S ++ A EK +S TC KP+
Sbjct: 61 FETPEAETPIRSPFKESCDPSLGLAGPGAKSQESQEADEQLVAEVVEKCSSKTC-SKPSE 119
Query: 710 AEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEK 889
E P++ ++ + H FS + K D S + GT A
Sbjct: 120 NE---VPQQAIDSHSVKNFREEP-EHDFSKISIVRPFSIETKDSTDISAVLGTKAAHGCV 175
Query: 890 APVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRK 1069
VS SP D + E+ + + E +++A + +R+ L K
Sbjct: 176 TAVSGKALPSSPPDAL-QDEAMTEGSMGVTLEASAEADLKAGNSCPELVPSRRSKLRKPK 234
Query: 1070 IVAEYEKTIAQMIEDEQRA 1126
V +K I D A
Sbjct: 235 PVPLRKKAIGGEFSDTNAA 253
>ref|NP_996744.2| transforming acidic coiled-coil-containing protein 2 isoform a [Homo
sapiens].
Length = 2948
Score = 154 bits (390), Expect = 1e-37
Identities = 78/119 (65%), Positives = 95/119 (79%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2739 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 2798
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2799 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2857
>ref|NP_996743.1| transforming acidic coiled-coil-containing protein 2 isoform b [Homo
sapiens].
Length = 1094
Score = 154 bits (390), Expect = 1e-37
Identities = 78/119 (65%), Positives = 95/119 (79%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 885 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 944
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 945 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 1003
>ref|NP_996742.1| transforming acidic coiled-coil-containing protein 2 isoform c [Homo
sapiens].
Length = 996
Score = 154 bits (390), Expect = 1e-37
Identities = 78/119 (65%), Positives = 95/119 (79%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 787 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 846
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 847 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 905
>ref|NP_008928.1| transforming acidic coiled-coil-containing protein 2 isoform d [Homo
sapiens].
Length = 1026
Score = 154 bits (390), Expect = 1e-37
Identities = 78/119 (65%), Positives = 95/119 (79%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R EIITKE E +EWK KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 817 GLLFQQPDLDSALQIARAEIITKEREVSEWKDKYEESRREVMEMRKIVAEYEKTIAQMIE 876
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 877 DEQREKSVSHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 935
>ref|NP_006333.1| transforming acidic coiled-coil-containing protein 3 [Homo sapiens].
Length = 838
Score = 83.2 bits (204), Expect = 5e-16
Identities = 51/148 (34%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Frame = +2
Query: 863 GTLEAPMEKAPVSVACGGESPL------DGICLSESDKTAVLTLIREEIITKEIEANEWK 1024
G L+ P+ P V G PL D + S+ D AV+ +EE E +
Sbjct: 607 GALDIPVPGPPPGVPAPGGPPLSTGPIVDLLQYSQKDLDAVVKATQEE-------NRELR 659
Query: 1025 KKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVE 1204
+ EE + LE+ KI+ +E+ + Q +E+ Q+ S+ Q++ EK+Q DLNS+E
Sbjct: 660 SRCEELHGKNLELGKIMDRFEEVVYQAMEEVQKQKELSKAEIQKVLKEKDQLTTDLNSME 719
Query: 1205 RSLSDLFRRYENLESVLEGVQKNEKPLK 1288
+S SDLF+R+E + V+EG +KNE+ LK
Sbjct: 720 KSFSDLFKRFEKQKEVIEGYRKNEESLK 747
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,555,701
Number of extensions: 1077025
Number of successful extensions: 5409
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5388
Number of HSP's successfully gapped: 9
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001899
(1290 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_955355.1| transforming acidic coiled-coil-containing prot... 391 e-109
Alignment gi|NP_796063.3| transforming acidic coiled-coil-containing prot... 336 2e-92
Alignment gi|NP_996738.2| transforming acidic coiled-coil-containing prot... 150 3e-36
Alignment gi|NP_067289.2| transforming acidic coiled-coil-containing prot... 150 3e-36
Alignment gi|NP_001004468.1| transforming acidic coiled-coil-containing p... 150 3e-36
Alignment gi|NP_001035525.1| transforming acidic coiled-coil-containing p... 84 2e-16
>ref|NP_955355.1| transforming acidic coiled-coil-containing protein 1 short isoform
[Mus musculus].
Length = 368
Score = 391 bits (1005), Expect = e-109
Identities = 216/305 (70%), Positives = 229/305 (75%), Gaps = 2/305 (0%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXX-QAETKSLSFRSGCKV 556
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSFRSGCKV
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFRSGCKV 60
Query: 557 KKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CGQKPTGAEGKGEPE 733
KKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C QK GA KG
Sbjct: 61 KKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCAQKSAGAGVKG--- 117
Query: 734 EDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACG 913
+EKE KMEK+ + G LE+ EKAPVSVACG
Sbjct: 118 --------------------------IEKETCQKMEKEELAVHGLLESSSEKAPVSVACG 151
Query: 914 GESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKT 1093
GESPLDGICLSE+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EVLEMRKIVAEYEKT
Sbjct: 152 GESPLDGICLSEADKTAVLTLIREEIITKEIEANEWKKKYEETREEVLEMRKIVAEYEKT 211
Query: 1094 IAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKN 1273
IAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRYENL+ VLEG +KN
Sbjct: 212 IAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRYENLKGVLEGFKKN 271
Query: 1274 EKPLK 1288
E+ LK
Sbjct: 272 EEALK 276
>ref|NP_796063.3| transforming acidic coiled-coil-containing protein 1 long isoform
[Mus musculus].
Length = 776
Score = 336 bits (862), Expect = 2e-92
Identities = 185/258 (71%), Positives = 199/258 (77%), Gaps = 1/258 (0%)
Frame = +2
Query: 518 ETKSLSFRSGCKVKKYEAQSLALDGCSQDEGAVISQISDISNRDGHATDEEKLASTT-CG 694
+ KS SGCKVKKYEAQ L LD CSQDEGAVIS+IS+I NRDGHATDEEKLAST+ C
Sbjct: 456 KAKSRLITSGCKVKKYEAQPLDLDACSQDEGAVISKISEIPNRDGHATDEEKLASTSSCA 515
Query: 695 QKPTGAEGKGEPEEDLEYFDCSHVPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLE 874
QK GA KG +EKE KMEK+ + G LE
Sbjct: 516 QKSAGAGVKG-----------------------------IEKETCQKMEKEELAVHGLLE 546
Query: 875 APMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEV 1054
+ EKAPVSVACGGESPLDGICLSE+DKTAVLTLIREEIITKEIEANEWKKKYEETR+EV
Sbjct: 547 SSSEKAPVSVACGGESPLDGICLSEADKTAVLTLIREEIITKEIEANEWKKKYEETREEV 606
Query: 1055 LEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRY 1234
LEMRKIVAEYEKTIAQMIEDEQR SM+SQKSFQQL MEKEQALADLNSVERSLSDLFRRY
Sbjct: 607 LEMRKIVAEYEKTIAQMIEDEQRTSMSSQKSFQQLTMEKEQALADLNSVERSLSDLFRRY 666
Query: 1235 ENLESVLEGVQKNEKPLK 1288
ENL+ VLEG +KNE+ LK
Sbjct: 667 ENLKGVLEGFKKNEEALK 684
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/56 (58%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVR-XXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 544
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGSGAGEDEAGGPEGDPEEEEDSQAETKSLSFSS 56
>ref|NP_996738.2| transforming acidic coiled-coil-containing protein 2 isoform a [Mus
musculus].
Length = 1146
Score = 150 bits (378), Expect = 3e-36
Identities = 75/119 (63%), Positives = 94/119 (78%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 937 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 996
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 997 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 1055
>ref|NP_067289.2| transforming acidic coiled-coil-containing protein 2 isoform b [Mus
musculus].
Length = 1036
Score = 150 bits (378), Expect = 3e-36
Identities = 75/119 (63%), Positives = 94/119 (78%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 827 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 886
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 887 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 945
>ref|NP_001004468.1| transforming acidic coiled-coil-containing protein 2 isoform c [Mus
musculus].
Length = 2879
Score = 150 bits (378), Expect = 3e-36
Identities = 75/119 (63%), Positives = 94/119 (78%)
Frame = +2
Query: 932 GICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIE 1111
G+ + D + L + R E+I KE E +EW+ KYEE+R+EV+EMRKIVAEYEKTIAQMIE
Sbjct: 2670 GLLFQQPDLDSALQVARAEVIAKEREVSEWRDKYEESRREVVEMRKIVAEYEKTIAQMIE 2729
Query: 1112 DEQRASMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
DEQR S ++ QQL +EKEQALADLNSVE+SL+DLFRRYE ++ VLEG +KNE+ LK
Sbjct: 2730 DEQREKSISHQTVQQLVLEKEQALADLNSVEKSLADLFRRYEKMKEVLEGFRKNEEVLK 2788
>ref|NP_001035525.1| transforming acidic coiled-coil-containing protein 3 [Mus musculus].
Length = 630
Score = 84.0 bits (206), Expect = 2e-16
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Frame = +2
Query: 764 VPVSAINHTFSSSEAGMEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVA-----CGGESPL 928
+PV+ I ++ +E + E G L+ P+ P+ V E +
Sbjct: 364 MPVAPITNSTQDTEEESGSGKPTEAELVNLDFLGDLDVPVSAPPLCVLEPRGLLPAEPIV 423
Query: 929 DGICLSESDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMI 1108
D + S+ D AV+ ++++E + E K KYE+ + LEM K V E+EK + +
Sbjct: 424 DVLKYSQKDLDAVVNVMQQENL-------ELKSKYEDLNTKYLEMGKSVDEFEKIAYKSL 476
Query: 1109 EDEQRA---SMTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEK 1279
E+ ++ ++ Q++ E++Q ADLNS+E+S SDLF+R+E + V+EG QKNE+
Sbjct: 477 EEAEKQRELKEIAEDKIQKVLKERDQLNADLNSMEKSFSDLFKRFEKRKEVIEGYQKNEE 536
Query: 1280 PLK 1288
LK
Sbjct: 537 SLK 539
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,459,739
Number of extensions: 883257
Number of successful extensions: 4142
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4128
Number of HSP's successfully gapped: 7
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001899
(1290 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-c... 263 1e-70
Alignment gi|XP_003133400.2| PREDICTED: hypothetical protein LOC100520518... 111 1e-24
Alignment gi|XP_003133410.1| PREDICTED: hypothetical protein LOC100523028... 110 1e-24
Alignment gi|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-c... 71 1e-12
Alignment gi|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-c... 65 6e-11
>ref|XP_003359527.1| PREDICTED: transforming acidic coiled-coil-containing protein 1-like
[Sus scrofa].
Length = 254
Score = 263 bits (673), Expect = 1e-70
Identities = 138/159 (86%), Positives = 147/159 (92%)
Frame = +2
Query: 812 MEKEMSLKMEKDGSTMPGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 991
++K M+ ++ D GTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI
Sbjct: 4 VKKLMTRRVTCDLFRPQGTLEAPMEKAPVSVACGGESPLDGICLSESDKTAVLTLIREEI 63
Query: 992 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLNMEK 1171
ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQL+MEK
Sbjct: 64 ITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRASMTSQKSFQQLSMEK 123
Query: 1172 EQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
EQALADLNSVERSLSDLFRRYENL+ VLEG +KNE+ LK
Sbjct: 124 EQALADLNSVERSLSDLFRRYENLKGVLEGFKKNEEALK 162
>ref|XP_003133400.2| PREDICTED: hypothetical protein LOC100520518 [Sus scrofa].
Length = 214
Score = 111 bits (277), Expect = 1e-24
Identities = 61/96 (63%), Positives = 61/96 (63%)
Frame = -3
Query: 289 AGRASSGGADVVKXXXXXXXXXXXXXXXXXXXXXXXXXXRTCGSGASAPGDSRWKDTSPG 110
AGRASSGGADVVK RTCGSGASAPGDSRWKDTSPG
Sbjct: 3 AGRASSGGADVVKRAPSGGPGGALPLRRQAAPRSPRPPSRTCGSGASAPGDSRWKDTSPG 62
Query: 109 ASXXXXXXXXXSGSAGQRLRVRASRLPPPGRRGAHQ 2
AS SGSAGQRLRVRASRLPPPGRRGAHQ
Sbjct: 63 ASSGPGPAGRLSGSAGQRLRVRASRLPPPGRRGAHQ 98
>ref|XP_003133410.1| PREDICTED: hypothetical protein LOC100523028 [Sus scrofa].
Length = 103
Score = 110 bits (276), Expect = 1e-24
Identities = 59/103 (57%), Positives = 59/103 (57%)
Frame = +2
Query: 5 MRASPARRREPGRSDPESLTRRAAXXXXXXXXXGGPWRGVFPXXXXXXXXXXXXXXXXXX 184
MRASPARRREPGRSDPESLTRRAA GGPWRGVFP
Sbjct: 1 MRASPARRREPGRSDPESLTRRAAEPPRGPGPRGGPWRGVFPARVAGCGGAAAARSGRRT 60
Query: 185 XXXXXXLPAEXXXXXXXXXXXSFNHIRASTGSASGACHRFPPF 313
LPAE SFNHIRASTGSASGACHRFPPF
Sbjct: 61 RRTGRCLPAERKRSTRAPRRRSFNHIRASTGSASGACHRFPPF 103
>ref|XP_003128852.1| PREDICTED: transforming acidic coiled-coil-containing protein 3-like
[Sus scrofa].
Length = 740
Score = 71.2 bits (173), Expect = 1e-12
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Frame = +2
Query: 797 SSEAGMEKEMSLKMEKDGSTMPGTLEAP----MEKAPVSVACGGE----SPL-DGICLSE 949
SS GM+ S + LEAP + AP + GG P+ D + S+
Sbjct: 484 SSACGMDAPSSGSAPEAALLDLDFLEAPALPALGPAPSDLGPGGPLLPVGPIVDVLQYSQ 543
Query: 950 SDKTAVLTLIREEIITKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRAS 1129
D A + ++E E + + E +++VLEM KI+ +E+T+ Q +E+ Q+
Sbjct: 544 RDLDAAVEATQKENA-------ELRSRCTELQEKVLEMGKIMDRFEETVYQAMEEAQKQK 596
Query: 1130 MTSQKSFQQLNMEKEQALADLNSVERSLSDLFRRYENLESVLEGVQKNEKPLK 1288
++ Q+ E+E DL SVE+S S+LFRR+E + V+EG + NE LK
Sbjct: 597 ELARVEVQKALQEQEHVSGDLRSVEKSFSELFRRFEKQKEVIEGYRTNEASLK 649
>ref|XP_003359532.1| PREDICTED: transforming acidic coiled-coil-containing protein 1
[Sus scrofa].
Length = 521
Score = 65.5 bits (158), Expect = 6e-11
Identities = 33/55 (60%), Positives = 33/55 (60%)
Frame = +2
Query: 380 MAFSPWQILSPVQWAKWTWSAVRXXXXXXXXXXXXXXXXXXXXXQAETKSLSFRS 544
MAFSPWQILSPVQWAKWTWSAVR QAETKSLSF S
Sbjct: 1 MAFSPWQILSPVQWAKWTWSAVRGGGAGGDEAGGSEGDPEEEDSQAETKSLSFSS 55
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,765,492
Number of extensions: 729912
Number of successful extensions: 3465
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3451
Number of HSP's successfully gapped: 5
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001899
(1290 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 914 0.0
Sscrofa_Chr14 72 8e-10
>Sscrofa_Chr15
|| Length = 157681621
Score = 914 bits (461), Expect = 0.0
Identities = 516/541 (95%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 1 gctgatgcgcgcctcgccggcccggaggcgggagccgggacgctcggacccggagtcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038466 gctgatgcgcgcctcgccggcccggaggcgggagccgggacgctcggacccggagtcgct 55038525
Query: 61 gacccgccgagccgctgannnnnnnnnnnnnnnnnnnnnnnnaggaggcccctggagagg 120
|||||||||||||||||| ||||||||||||||||||
Sbjct: 55038526 gacccgccgagccgctgagccgccccgcgggcccgggccccgaggaggcccctggagagg 55038585
Query: 121 tgtctttccagcgagagtcgccgggtgcggaggcgccgctgccgcacgttcgggaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038586 tgtctttccagcgagagtcgccgggtgcggaggcgccgctgccgcacgttcgggaaggag 55038645
Query: 181 gacgaggagaacggggcgctgcctgccggcggagaggaagcgctccacccgggccccccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038646 gacgaggagaacggggcgctgcctgccggcggagaggaagcgctccacccgggccccccg 55038705
Query: 241 acggcgctcgtttaaccacatccgcgcctccactggaagcgcgtccggcgcctgtcaccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038706 acggcgctcgtttaaccacatccgcgcctccactggaagcgcgtccggcgcctgtcaccg 55038765
Query: 301 gttccctccattttgaaagggaaaaaaggctctcccccttcccctcctcctaggagccgg 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038766 gttccctccattt-gaaagggaaaaaaggctctcccccttcccctcctcctaggagccgg 55038824
Query: 361 agctggaggagccgcgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038825 agctggaggagccgcgctcatggcgttcagcccctggcagatcctgtcccccgtgcagtg 55038884
Query: 421 ggcgaaatggacatggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038885 ggcgaaatggacatggtccgcggtgcgcggcgggggcgccggaggggacgaggccggagg 55038944
Query: 481 gtcggagggcgaccccgaggaggaggactcgcaagccgagaccaaatccttgagtttcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55038945 gtcggagggcgaccccgaggaggaggactcgcaagccgagaccaaatccttgagtttcag 55039004
Query: 541 g 541
|
Sbjct: 55039005 g 55039005
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 599 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069303 caggatgaaggagcagtgatctcccagatttctgacatttccaacagggatggccacgca 55069362
Query: 659 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069363 acagatgaggagaagctggcgtccacgacctgcggtcagaaacccaccggggccgagggg 55069422
Query: 719 aaaggtgagccagaggaagacctggagtactttgactgttcccatgttcccgtgtctgcc 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55069423 aaaggtgagccagaggaagacctggagtactttgactgttcccatgttcccgtgtctgcc 55069482
Query: 779 ataaatcatacgttttcatcctcagaagcagg 810
||||||||||||||||||||||||||||||||
Sbjct: 55069483 ataaatcatacgttttcatcctcagaagcagg 55069514
Score = 266 bits (134), Expect = 3e-68
Identities = 155/162 (95%)
Strand = Plus / Minus
Query: 1109 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgaacatggag 1168
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 54871683 gaagatgaacagagggcgagtatgacctcccagaagagcttccagcagctgagcatggag 54871624
Query: 1169 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54871623 aaggagcaggcgctggccgacctcaactccgtggagaggtccctctccgacctcttcagg 54871564
Query: 1229 cgatatgaaaacctggaaagcgtcctggaaggggtccagaag 1270
|||||||| |||||| || |||||||||| ||| || |||||
Sbjct: 54871563 cgatatgagaacctgaaaggcgtcctggaggggttcaagaag 54871522
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 863 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55079996 ggaaccttggaggccccgatggagaaggctcctgtgtccgtggcctgcggaggggagagc 55080055
Query: 923 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 979
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55080056 cccctggacggcatctgcctcagtgaatcagacaagaccgccgtgctcaccctgatc 55080112
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 987 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54875357 agataatcactaaagagattgaagcaaatgaatggaagaaaaaatatgaagaaacccgac 54875298
Query: 1047 aagaagtcttggagatgagg 1066
||||||||||||||||||||
Sbjct: 54875297 aagaagtcttggagatgagg 54875278
Score = 121 bits (61), Expect = 1e-24
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 538 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55066573 caggagtggctgtaaggtgaagaaatatgaagcccagtctcttgctttggatgggtgttc 55066632
Query: 598 tcagg 602
||||
Sbjct: 55066633 gcagg 55066637
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 808 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55072342 aggcatggagaaagagatgagcctgaagatggagaaggatggatccaccatgcccg 55072397
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 1064 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 1109
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54873231 aggaaaattgtggccgagtatgagaagaccattgcccaaatgatcg 54873186
>Sscrofa_Chr14
|| Length = 153851969
Score = 71.9 bits (36), Expect = 8e-10
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1064 aggaaaattgtggccgagtatgagaagaccattgcccaaatgat 1107
|||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 143120522 aggaaaatagtggccgagtatgagaagaccatcgcccaaatgat 143120565
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,257,977
Number of extensions: 319
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 10
Length of query: 1290
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1269
Effective length of database: 2,808,413,156
Effective search space: 3563876294964
Effective search space used: 3563876294964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)